Citrus Sinensis ID: 039406

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240---
Protein Sequence
DPYGGRQQHWQQNVPPPAAHVVTQPPRSSPPPLVASSPPHSPVYTPSPPLPPPPFMSNSGGSGSNYSGSEAPILPQSPGLSLGFSKSTFTYEELARATDGFSDANLLRQDGFGYVHRGVLPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHDDLANILLDFKFEAKVADFGLAKIASDVNTHVSTRVMGTFG
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccEEEEEEccccccHHHHHHHHHHHHHHccccccccEEEEEccccEEEEEEEEcccccHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccEEEcccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccEcccccccHHHHHHHHHHHHHcccccccccccccccEEcccccEEcHHHHHHHHcccccccccccccccEEEEcEccccccccHHHEHEEEEHHHHHcHcHHHEEEEEEccccEEEEEEEcccccHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHEcccccccHHHHccHHEEcccccccEEEEEEEccc
Coil and Loop (DISEMBL)
dpyggrqqhwqqnvpppaahvvtqpprssppplvasspphspvytpspplppppfmsnsggsgsnysgseapilpqspglslgfskstfTYEELARatdgfsdanllrqdgfgyvhrgvlpngkegerEFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLvfhlhgkgqptmdwpTRIKIALGSAKGLAYLHDDLANILLDFKFEAKVADFGLAKIASDVNTHVSTRVMGTFG
Flexible Loop (DISEMBL)
DPYGGRQQHWQQNVPPPAAHVVTQPPRSSPPPLVASSPPHSPVYTPSPPLPPPPFMSNSGGSGSNYSGSEAPILPQSPGLSLGFSKSTFTYEELARATDGFSDANLLRQDGFGYVHRGVLPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHDDLANILLDFKFEAKVADFGLAKiasdvnthvstrvmgtfg
Low Complexity Region (SEG)
DPYGGRQQHWQQNVPPPAAHVVTQpprssppplvasspphspvytpspplppppfmsnsggsgsnysgsEAPILPQSPGLSLGFSKSTFTYEELARATDGFSDANLLRQDGFGYVHRGVLPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHDDLANILLDFKFEAKVADFGLAKIASDVNTHVSTRVMGTFG
Disordered region (IsUnstruct)
*************************************************************************************KSTFTYEELARATDGFSDANLLRQDGFGYVHRGVLPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHDDLANILLDFKFEAKVADFGLAKIASDVNTHVS********
Disordered Region (DISOPRED)
**************************************************************************************STFTYEELARATDGFSDANLLRQDGFGYVHRGVLPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHDDLANILLDFKFEAKVADFGLAKIASDVNTHVSTRVMGTFG
Disordered Region (DISEMBL)
********************************************TPSPPLPPPPFMSNSGGSGSNYSGSEAPILPQSPGLSLGFSKSTFTYEELARATDGFSDANLLRQDGFGYVHRGVLPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHDDLANILLDFKFEAKVADFGLAKIASDVNTHVSTRVMGTFG
Disordered Region (DISPRO)
*****RQQHWQQNVPPPAAHVVTQPPRSS**********HSPVYTPSPPLPPPPFMSNSGGSGSNYSGSEAPILPQSPGLSLGFSKSTFTYEELARATDGFSDANLLRQDGFGYVHRGVLPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHDDLANILLDFKFEAKVADFGLAKIASDVNTHVSTRVMGTFG
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
DPYGGRQQHWQQNVPPPAAHVVTQPPRSSPPPLVASSPPHSPVYTPSPPLPPPPFMSNSGGSGSNYSGSEAPILPQSPGLSLGFSKSTFTYEELARATDGFSDANLLRQDGFGYVHRGVLPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHDDLANILLDFKFEAKVADFGLAKIASDVNTHVSTRVMGTFG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	243	2.2.26 [Sep-21-2011]
Q9LV48	652	Proline-rich receptor-lik	yes	no	0.707	0.263	0.724	1e-75
Q9ZNQ8	633	Proline-rich receptor-lik	no	no	0.773	0.296	0.650	2e-69
Q9LK03	717	Proline-rich receptor-lik	no	no	0.925	0.313	0.563	1e-68
Q8GX23	670	Proline-rich receptor-lik	no	no	0.732	0.265	0.640	1e-67
Q9XI96	699	Proline-rich receptor-lik	no	no	0.930	0.323	0.594	1e-67
Q1PEM5	513	Proline-rich receptor-lik	no	no	0.893	0.423	0.525	7e-65
Q9LS95	700	Putative proline-rich rec	no	no	0.670	0.232	0.666	8e-64
Q9C821	509	Proline-rich receptor-lik	no	no	0.650	0.310	0.585	4e-56
Q9CAL8	710	Proline-rich receptor-lik	no	no	0.753	0.257	0.542	6e-55
Q9FFW5	681	Proline-rich receptor-lik	no	no	0.843	0.301	0.491	8e-55

>sp|Q9LV48|PERK1_ARATH Proline-rich receptor-like protein kinase PERK1 OS=Arabidopsis thaliana GN=PERK1 PE=1 SV=1

 Score =  283 bits (723), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 142/196 (72%), Positives = 159/196 (81%), Gaps = 24/196 (12%)

Query: 72  PILPQ-SPGLSLGFSKSTFTYEELARATDGFSDANLLRQDGFGYVHRGVLPNGKE----- 125
           P+LP  SPGL LGFSKSTFTYEEL+RAT+GFS+ANLL Q GFGYVH+G+LP+GKE     
Sbjct: 250 PVLPPPSPGLVLGFSKSTFTYEELSRATNGFSEANLLGQGGFGYVHKGILPSGKEVAVKQ 309

Query: 126 -------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKG 178
                  GEREFQAEVEIISRVHH+HLVSL+GY  AG QR+LVYEFV NN L FHLHGKG
Sbjct: 310 LKAGSGQGEREFQAEVEIISRVHHRHLVSLIGYCMAGVQRLLVYEFVPNNNLEFHLHGKG 369

Query: 179 QPTMDWPTRIKIALGSAKGLAYLHDDL-----------ANILLDFKFEAKVADFGLAKIA 227
           +PTM+W TR+KIALGSAKGL+YLH+D            +NIL+DFKFEAKVADFGLAKIA
Sbjct: 370 RPTMEWSTRLKIALGSAKGLSYLHEDCNPKIIHRDIKASNILIDFKFEAKVADFGLAKIA 429

Query: 228 SDVNTHVSTRVMGTFG 243
           SD NTHVSTRVMGTFG
Sbjct: 430 SDTNTHVSTRVMGTFG 445

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9ZNQ8|PERK4_ARATH Proline-rich receptor-like protein kinase PERK4 OS=Arabidopsis thaliana GN=PERK4 PE=1 SV=1

 Score =  262 bits (669), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 138/212 (65%), Positives = 157/212 (74%), Gaps = 24/212 (11%)

Query: 56  MSNSGGSGSNYSGSEAPILPQ-SPGLSLGFSKSTFTYEELARATDGFSDANLLRQDGFGY 114
           M  SG   S YSG   P+LP  SP L+LGF+KSTFTY+ELA AT GF+DANLL Q GFGY
Sbjct: 238 MPTSGEDSSMYSGPSRPVLPPPSPALALGFNKSTFTYQELAAATGGFTDANLLGQGGFGY 297

Query: 115 VHRGVLPNGKE------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVY 162
           VH+GVLP+GKE            GEREFQAEV+IISRVHH++LVSLVGY  A  QRMLVY
Sbjct: 298 VHKGVLPSGKEVAVKSLKAGSGQGEREFQAEVDIISRVHHRYLVSLVGYCIADGQRMLVY 357

Query: 163 EFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHDDL-----------ANILLD 211
           EFV N TL +HLHGK  P M++ TR++IALG+AKGLAYLH+D            ANILLD
Sbjct: 358 EFVPNKTLEYHLHGKNLPVMEFSTRLRIALGAAKGLAYLHEDCHPRIIHRDIKSANILLD 417

Query: 212 FKFEAKVADFGLAKIASDVNTHVSTRVMGTFG 243
           F F+A VADFGLAK+ SD NTHVSTRVMGTFG
Sbjct: 418 FNFDAMVADFGLAKLTSDNNTHVSTRVMGTFG 449

Required during abscisic acid (ABA)-mediated activation of Ca(2+) channels. Regulates ABA signaling pathways. Modulates the expression of genes related to cell elongation and ABA signaling during root growth.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LK03|PERK2_ARATH Proline-rich receptor-like protein kinase PERK2 OS=Arabidopsis thaliana GN=PERK2 PE=2 SV=3

 Score =  259 bits (662), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 151/268 (56%), Positives = 179/268 (66%), Gaps = 43/268 (16%)

Query: 2   PYGGRQQHWQQNVPPPAAHVVTQPPRSSPPPLVASSPPHSPVYTPSPPLPPPPFMSNSGG 61
           PYGG+QQ   QN    + HVV   P    P      PPH              FMS+   
Sbjct: 269 PYGGQQQ---QNASRRSDHVVMSVPPPKSPSSAPPRPPH--------------FMSSGSS 311

Query: 62  SGSNYSGSEAPILPQ-SPGLSLGFS--KSTFTYEELARATDGFSDANLLRQDGFGYVHRG 118
              + + S+  +LP  SPGL+LG    + TF YEEL+RAT+GFS+ANLL Q GFGYV +G
Sbjct: 312 GDYDSNYSDQSVLPPPSPGLALGLGIYQGTFNYEELSRATNGFSEANLLGQGGFGYVFKG 371

Query: 119 VLPNGKE------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVL 166
           +L NGKE            GEREFQAEV IISRVHH+HLV+LVGY  A +QR+LVYEFV 
Sbjct: 372 MLRNGKEVAVKQLKEGSSQGEREFQAEVGIISRVHHRHLVALVGYCIADAQRLLVYEFVP 431

Query: 167 NNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHDDL-----------ANILLDFKFE 215
           NNTL FHLHGKG+PTM+W +R+KIA+GSAKGL+YLH++            +NIL+DFKFE
Sbjct: 432 NNTLEFHLHGKGRPTMEWSSRLKIAVGSAKGLSYLHENCNPKIIHRDIKASNILIDFKFE 491

Query: 216 AKVADFGLAKIASDVNTHVSTRVMGTFG 243
           AKVADFGLAKIASD NTHVSTRVMGTFG
Sbjct: 492 AKVADFGLAKIASDTNTHVSTRVMGTFG 519

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8GX23|PERK5_ARATH Proline-rich receptor-like protein kinase PERK5 OS=Arabidopsis thaliana GN=PERK5 PE=2 SV=1

 Score =  256 bits (653), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 130/203 (64%), Positives = 154/203 (75%), Gaps = 25/203 (12%)

Query: 64  SNYSGSEAPILPQSPGLSLGFSKSTFTYEELARATDGFSDANLLRQDGFGYVHRGVLPNG 123
           SN +G  A   PQ+   +LG ++STFTY+EL+ AT+GF+ +NLL Q GFGYVH+GVLP+G
Sbjct: 277 SNLTGRTAIPSPQA--ATLGHNQSTFTYDELSIATEGFAQSNLLGQGGFGYVHKGVLPSG 334

Query: 124 KE------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLV 171
           KE            GEREFQAEV+IISRVHH+HLVSLVGY  +G QR+LVYEF+ NNTL 
Sbjct: 335 KEVAVKSLKLGSGQGEREFQAEVDIISRVHHRHLVSLVGYCISGGQRLLVYEFIPNNTLE 394

Query: 172 FHLHGKGQPTMDWPTRIKIALGSAKGLAYLHDDL-----------ANILLDFKFEAKVAD 220
           FHLHGKG+P +DWPTR+KIALGSA+GLAYLH+D            ANILLDF FE KVAD
Sbjct: 395 FHLHGKGRPVLDWPTRVKIALGSARGLAYLHEDCHPRIIHRDIKAANILLDFSFETKVAD 454

Query: 221 FGLAKIASDVNTHVSTRVMGTFG 243
           FGLAK++ D  THVSTRVMGTFG
Sbjct: 455 FGLAKLSQDNYTHVSTRVMGTFG 477

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9XI96|PERK7_ARATH Proline-rich receptor-like protein kinase PERK7 OS=Arabidopsis thaliana GN=PERK7 PE=2 SV=1

 Score =  256 bits (653), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 154/259 (59%), Positives = 174/259 (67%), Gaps = 33/259 (12%)

Query: 13  NVPPPAAHVVTQPPRSSPPPLVASSPPHSPVYTPSPPLPPP--PFMSNSGGSGSNYS-GS 69
           N+PPP   + T    S PPP   +  P      PSPP P      +  SG   SN+S G 
Sbjct: 249 NLPPPPGSMGTNWVSSPPPPPPGNWQP-----MPSPPAPVSGGANVIQSGEMSSNFSSGP 303

Query: 70  EAPILPQ-SPGLSLGFSKSTFTYEELARATDGFSDANLLRQDGFGYVHRGVLPNGKE--- 125
            AP LP   P ++LGF+ STFTYEELA AT GFS   LL Q GFGYVH+G+LPNGKE   
Sbjct: 304 YAPSLPPPHPSVALGFNNSTFTYEELASATQGFSKDRLLGQGGFGYVHKGILPNGKEIAV 363

Query: 126 ---------GEREFQAEVEIISRVHHKHLVSLVGYYT-AGSQRMLVYEFVLNNTLVFHLH 175
                    GEREFQAEVEIISRVHH+HLVSLVGY + AG QR+LVYEF+ N+TL FHLH
Sbjct: 364 KSLKAGSGQGEREFQAEVEIISRVHHRHLVSLVGYCSNAGGQRLLVYEFLPNDTLEFHLH 423

Query: 176 GKGQPTMDWPTRIKIALGSAKGLAYLHDDL-----------ANILLDFKFEAKVADFGLA 224
           GK    MDWPTR+KIALGSAKGLAYLH+D            +NILLD  FEAKVADFGLA
Sbjct: 424 GKSGTVMDWPTRLKIALGSAKGLAYLHEDCHPKIIHRDIKASNILLDHNFEAKVADFGLA 483

Query: 225 KIASDVNTHVSTRVMGTFG 243
           K++ D NTHVSTRVMGTFG
Sbjct: 484 KLSQDNNTHVSTRVMGTFG 502

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q1PEM5|PERK3_ARATH Proline-rich receptor-like protein kinase PERK3 OS=Arabidopsis thaliana GN=PERK3 PE=2 SV=2

 Score =  247 bits (630), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 136/259 (52%), Positives = 169/259 (65%), Gaps = 42/259 (16%)

Query: 25  PPRSSPPPLVASSPPHSPVYTPSPPLPPPPFMSNSGGSGSNYSG---------------- 68
           PP +SP     ++P  +P ++ SPP   P  +S     G +  G                
Sbjct: 92  PPPASPSGQEPTTPTMTPGFSLSPP--SPSRLSTGAVVGISIGGGVFVLTLIFFLCKKKR 149

Query: 69  -SEAPILPQSPGLSLGFSKSTFTYEELARATDGFSDANLLRQDGFGYVHRGVLPNGKE-- 125
             +   LP   GL LG  +STFTY ELARAT+ FS+ANLL + GFG+V++G+L NG E  
Sbjct: 150 PRDDKALPAPIGLVLGIHQSTFTYGELARATNKFSEANLLGEGGFGFVYKGILNNGNEVA 209

Query: 126 ----------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLH 175
                     GE+EFQAEV IIS++HH++LVSLVGY  AG+QR+LVYEFV NNTL FHLH
Sbjct: 210 VKQLKVGSAQGEKEFQAEVNIISQIHHRNLVSLVGYCIAGAQRLLVYEFVPNNTLEFHLH 269

Query: 176 GKGQPTMDWPTRIKIALGSAKGLAYLHDDL-----------ANILLDFKFEAKVADFGLA 224
           GKG+PTM+W  R+KIA+ S+KGL+YLH++            ANIL+DFKFEAKVADFGLA
Sbjct: 270 GKGRPTMEWSLRLKIAVSSSKGLSYLHENCNPKIIHRDIKAANILIDFKFEAKVADFGLA 329

Query: 225 KIASDVNTHVSTRVMGTFG 243
           KIA D NTHVSTRVMGTFG
Sbjct: 330 KIALDTNTHVSTRVMGTFG 348

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LS95|PERK6_ARATH Putative proline-rich receptor-like protein kinase PERK6 OS=Arabidopsis thaliana GN=PERK6 PE=2 SV=2

 Score =  243 bits (620), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 124/186 (66%), Positives = 141/186 (75%), Gaps = 23/186 (12%)

Query: 81  SLGFSKSTFTYEELARATDGFSDANLLRQDGFGYVHRGVLPNGKE------------GER 128
           +LGF+KSTFTY+ELA AT GFS + LL Q GFGYVH+G+LPNGKE            GER
Sbjct: 317 ALGFNKSTFTYDELAAATQGFSQSRLLGQGGFGYVHKGILPNGKEIAVKSLKAGSGQGER 376

Query: 129 EFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRI 188
           EFQAEV+IISRVHH+ LVSLVGY  AG QRMLVYEF+ N+TL FHLHGK    +DWPTR+
Sbjct: 377 EFQAEVDIISRVHHRFLVSLVGYCIAGGQRMLVYEFLPNDTLEFHLHGKSGKVLDWPTRL 436

Query: 189 KIALGSAKGLAYLHDDL-----------ANILLDFKFEAKVADFGLAKIASDVNTHVSTR 237
           KIALGSAKGLAYLH+D            +NILLD  FEAKVADFGLAK++ D  THVSTR
Sbjct: 437 KIALGSAKGLAYLHEDCHPRIIHRDIKASNILLDESFEAKVADFGLAKLSQDNVTHVSTR 496

Query: 238 VMGTFG 243
           +MGTFG
Sbjct: 497 IMGTFG 502

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9C821|PEK15_ARATH Proline-rich receptor-like protein kinase PERK15 OS=Arabidopsis thaliana GN=PERK15 PE=1 SV=1

 Score =  218 bits (554), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 106/181 (58%), Positives = 132/181 (72%), Gaps = 23/181 (12%)

Query: 86  KSTFTYEELARATDGFSDANLLRQDGFGYVHRGVLPNGK------------EGEREFQAE 133
           ++ FTYE+L++AT  FS+ NLL Q GFGYVHRGVL +G             +GEREFQAE
Sbjct: 128 QNLFTYEDLSKATSNFSNTNLLGQGGFGYVHRGVLVDGTLVAIKQLKSGSGQGEREFQAE 187

Query: 134 VEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALG 193
           ++ ISRVHH+HLVSL+GY   G+QR+LVYEFV N TL FHLH K +P M+W  R+KIALG
Sbjct: 188 IQTISRVHHRHLVSLLGYCITGAQRLLVYEFVPNKTLEFHLHEKERPVMEWSKRMKIALG 247

Query: 194 SAKGLAYLHDDL-----------ANILLDFKFEAKVADFGLAKIASDVNTHVSTRVMGTF 242
           +AKGLAYLH+D            ANIL+D  +EAK+ADFGLA+ + D +THVSTR+MGTF
Sbjct: 248 AAKGLAYLHEDCNPKTIHRDVKAANILIDDSYEAKLADFGLARSSLDTDTHVSTRIMGTF 307

Query: 243 G 243
           G
Sbjct: 308 G 308

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9CAL8|PEK13_ARATH Proline-rich receptor-like protein kinase PERK13 OS=Arabidopsis thaliana GN=PERK13 PE=2 SV=1

 Score =  214 bits (544), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 115/212 (54%), Positives = 142/212 (66%), Gaps = 29/212 (13%)

Query: 55  FMSNSGGSGSNYSGSEAPILPQSPGLSLGFSKSTFTYEELARATDGFSDANLLRQDGFGY 114
           F S  GG G   SGS     P S    +G  ++ FTYEEL   T+GFS  N+L + GFG 
Sbjct: 313 FGSQRGGGGYTRSGS----APDSA--VMGSGQTHFTYEELTDITEGFSKHNILGEGGFGC 366

Query: 115 VHRGVLPNGK------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVY 162
           V++G L +GK            +G+REF+AEVEIISRVHH+HLVSLVGY  A S+R+L+Y
Sbjct: 367 VYKGKLNDGKLVAVKQLKVGSGQGDREFKAEVEIISRVHHRHLVSLVGYCIADSERLLIY 426

Query: 163 EFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHDDL-----------ANILLD 211
           E+V N TL  HLHGKG+P ++W  R++IA+GSAKGLAYLH+D            ANILLD
Sbjct: 427 EYVPNQTLEHHLHGKGRPVLEWARRVRIAIGSAKGLAYLHEDCHPKIIHRDIKSANILLD 486

Query: 212 FKFEAKVADFGLAKIASDVNTHVSTRVMGTFG 243
            +FEA+VADFGLAK+     THVSTRVMGTFG
Sbjct: 487 DEFEAQVADFGLAKLNDSTQTHVSTRVMGTFG 518

Regulates negatively root hairs elongation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FFW5|PERK8_ARATH Proline-rich receptor-like protein kinase PERK8 OS=Arabidopsis thaliana GN=PERK8 PE=1 SV=1

 Score =  213 bits (543), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 117/238 (49%), Positives = 153/238 (64%), Gaps = 33/238 (13%)

Query: 31  PPLVASSPPHSPVYTPSPPLPPPPFMSNSGGSGSNYSGSEAPILPQSPGLSLGFSKSTFT 90
           PP   SSP  S V   +     PP M +  GS   Y+ S++ ++           +S F+
Sbjct: 277 PPSAYSSPQGSDVVLFNSRSSAPPKMRSHSGSDYMYASSDSGMVSNQ--------RSWFS 328

Query: 91  YEELARATDGFSDANLLRQDGFGYVHRGVLPNGKE------------GEREFQAEVEIIS 138
           Y+EL++ T GFS+ NLL + GFG V++GVL +G+E            GEREF+AEVEIIS
Sbjct: 329 YDELSQVTSGFSEKNLLGEGGFGCVYKGVLSDGREVAVKQLKIGGSQGEREFKAEVEIIS 388

Query: 139 RVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGL 198
           RVHH+HLV+LVGY  +   R+LVY++V NNTL +HLH  G+P M W TR+++A G+A+G+
Sbjct: 389 RVHHRHLVTLVGYCISEQHRLLVYDYVPNNTLHYHLHAPGRPVMTWETRVRVAAGAARGI 448

Query: 199 AYLHDDL-----------ANILLDFKFEAKVADFGLAKIAS--DVNTHVSTRVMGTFG 243
           AYLH+D            +NILLD  FEA VADFGLAKIA   D+NTHVSTRVMGTFG
Sbjct: 449 AYLHEDCHPRIIHRDIKSSNILLDNSFEALVADFGLAKIAQELDLNTHVSTRVMGTFG 506

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	243
359484580	650	PREDICTED: proline-rich receptor-like pr	1.0	0.373	0.722	2e-86
121308607	665	PERK1-like protein kinase [Nicotiana tab	0.995	0.363	0.699	2e-83
356520519	671	PREDICTED: proline-rich receptor-like pr	0.971	0.351	0.706	4e-81
356520517	672	PREDICTED: proline-rich receptor-like pr	0.971	0.351	0.706	4e-81
449443147	672	PREDICTED: proline-rich receptor-like pr	0.991	0.358	0.666	1e-80
225442587	551	PREDICTED: proline-rich receptor-like pr	0.921	0.406	0.625	1e-79
357134253	652	PREDICTED: proline-rich receptor-like pr	0.962	0.358	0.644	2e-79
351725713	443	putative receptor protein kinase PERK1 [	0.695	0.381	0.786	2e-79
147828268	603	hypothetical protein VITISV_010509 [Viti	0.921	0.371	0.625	3e-79
53982302	471	putative protein kinase [Oryza sativa Ja	0.958	0.494	0.660	9e-79

>gi|359484580|ref|XP_002284430.2| PREDICTED: proline-rich receptor-like protein kinase PERK1-like isoform 2 [Vitis vinifera] gi|297738823|emb|CBI28068.3| unnamed protein product [Vitis vinifera]

 Score =  324 bits (830), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 193/267 (72%), Positives = 208/267 (77%), Gaps = 24/267 (8%)

Query: 1   DPYGGRQQHWQQNVPPPAAHVVTQPPRSSPPPLVASSPPHSPVYTPSPPLPPPP-FMSNS 59
           DPYGG  Q WQ NVPPPA H VT  P+ SPPP  AS PPHSPV  P+PP PP P F+S+S
Sbjct: 177 DPYGGPPQQWQHNVPPPADHAVTVFPKPSPPPGTASRPPHSPVQVPTPPPPPQPPFVSSS 236

Query: 60  GGSGSNYSGSEAPILPQSPGLSLGFSKSTFTYEELARATDGFSDANLLRQDGFGYVHRGV 119
           GGSGSNYSGS+ P+ P SP ++LGFSKSTFTYEEL  ATDGFS+ANLL Q GFGYVHRGV
Sbjct: 237 GGSGSNYSGSDNPLPPPSPSIALGFSKSTFTYEELVMATDGFSNANLLGQGGFGYVHRGV 296

Query: 120 LPNGKE------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLN 167
           LPNGKE            GEREFQAEVEIISRVHHKHLV+L GY   GS R+LVYEFV N
Sbjct: 297 LPNGKEVAVKQLKAGSGQGEREFQAEVEIISRVHHKHLVTLAGYCITGSHRLLVYEFVPN 356

Query: 168 NTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHDDL-----------ANILLDFKFEA 216
           NTL FHLHGKG+PTMDW TR+KIALGSAKGLAYLH+D            ANILLDFKFEA
Sbjct: 357 NTLEFHLHGKGRPTMDWSTRLKIALGSAKGLAYLHEDCHPKIIHRDIKAANILLDFKFEA 416

Query: 217 KVADFGLAKIASDVNTHVSTRVMGTFG 243
           KVADFGLAK +SD NTHVSTRVMGTFG
Sbjct: 417 KVADFGLAKFSSDANTHVSTRVMGTFG 443

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|121308607|dbj|BAF43699.1| PERK1-like protein kinase [Nicotiana tabacum]

 Score =  314 bits (805), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 186/266 (69%), Positives = 201/266 (75%), Gaps = 24/266 (9%)

Query: 1   DPYGGRQQHWQQNVPPPAAHVVTQPPRSSPPPLVASSPPHSPVYTPSPPLPPPPFMSNSG 60
           DPYG    HWQ N P PA HVV+ PP+ SPPP  AS PPHSPV   S   PPPP   +S 
Sbjct: 190 DPYGDPVHHWQHNAPSPADHVVSIPPKPSPPPAGASRPPHSPVTASSLQPPPPPPYMSSS 249

Query: 61  GSGSNYSGSEAPILPQSPGLSLGFSKSTFTYEELARATDGFSDANLLRQDGFGYVHRGVL 120
           G+ SNYSG + P+ P SPG+ LGFSKSTFTYEEL RATDGFS+ANLL Q GFGYVHRGVL
Sbjct: 250 GASSNYSGFD-PLPPPSPGMVLGFSKSTFTYEELVRATDGFSNANLLGQGGFGYVHRGVL 308

Query: 121 PNGKE------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNN 168
           PNGKE            GEREFQAEVEIISRVHHKHLVSLVGY   GSQR+LVYEFV NN
Sbjct: 309 PNGKEVAVKQLKAGSGQGEREFQAEVEIISRVHHKHLVSLVGYCITGSQRLLVYEFVPNN 368

Query: 169 TLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHDDL-----------ANILLDFKFEAK 217
           TL FHLHGKG+P +DWP R+KIALGSAKGLAYLH+D            ANIL+DF FEAK
Sbjct: 369 TLEFHLHGKGRPPLDWPIRLKIALGSAKGLAYLHEDCQPKIIHRDIKAANILVDFNFEAK 428

Query: 218 VADFGLAKIASDVNTHVSTRVMGTFG 243
           VADFGLAK+ SDVNTHVSTRVMGTFG
Sbjct: 429 VADFGLAKLTSDVNTHVSTRVMGTFG 454

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520519|ref|XP_003528909.1| PREDICTED: proline-rich receptor-like protein kinase PERK15-like isoform 2 [Glycine max]

 Score =  306 bits (785), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 188/266 (70%), Positives = 202/266 (75%), Gaps = 30/266 (11%)

Query: 1   DPYGGRQQHWQQNVPPPAAHVVTQPPRSSPPPLVASSPPHSPVYTPSPPLPPPPFMSNSG 60
           D YGG  + WQ NVPPP  HVV      S  P   S PP  P Y   PP PPPPF+ +SG
Sbjct: 206 DAYGGPPRQWQHNVPPPQDHVV------SMMPPKPSPPPAPPAYAAQPPPPPPPFIISSG 259

Query: 61  GSGSNYSGSEAPILPQSPGLSLGFSKSTFTYEELARATDGFSDANLLRQDGFGYVHRGVL 120
           GSGSNYSG E  + P SPG++LGFSKSTFTYEELARATDGFSDANLL Q GFGYVHRG+L
Sbjct: 260 GSGSNYSGGEF-LPPPSPGIALGFSKSTFTYEELARATDGFSDANLLGQGGFGYVHRGIL 318

Query: 121 PNGKE------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNN 168
           PNGKE            GEREFQAEVEIISRVHHKHLVSLVGY   GSQR+LVYEFV NN
Sbjct: 319 PNGKEVAVKQLKAGSGQGEREFQAEVEIISRVHHKHLVSLVGYCITGSQRLLVYEFVPNN 378

Query: 169 TLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHDDL-----------ANILLDFKFEAK 217
           TL FHLHG+G+PTMDWPTR++IALGSAKGLAYLH+D            ANILLDFKFEAK
Sbjct: 379 TLEFHLHGRGRPTMDWPTRLRIALGSAKGLAYLHEDCHPKIIHRDIKAANILLDFKFEAK 438

Query: 218 VADFGLAKIASDVNTHVSTRVMGTFG 243
           VADFGLAK +SDVNTHVSTRVMGTFG
Sbjct: 439 VADFGLAKFSSDVNTHVSTRVMGTFG 464

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520517|ref|XP_003528908.1| PREDICTED: proline-rich receptor-like protein kinase PERK15-like isoform 1 [Glycine max]

 Score =  306 bits (785), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 188/266 (70%), Positives = 202/266 (75%), Gaps = 30/266 (11%)

Query: 1   DPYGGRQQHWQQNVPPPAAHVVTQPPRSSPPPLVASSPPHSPVYTPSPPLPPPPFMSNSG 60
           D YGG  + WQ NVPPP  HVV      S  P   S PP  P Y   PP PPPPF+ +SG
Sbjct: 207 DAYGGPPRQWQHNVPPPQDHVV------SMMPPKPSPPPAPPAYAAQPPPPPPPFIISSG 260

Query: 61  GSGSNYSGSEAPILPQSPGLSLGFSKSTFTYEELARATDGFSDANLLRQDGFGYVHRGVL 120
           GSGSNYSG E  + P SPG++LGFSKSTFTYEELARATDGFSDANLL Q GFGYVHRG+L
Sbjct: 261 GSGSNYSGGEF-LPPPSPGIALGFSKSTFTYEELARATDGFSDANLLGQGGFGYVHRGIL 319

Query: 121 PNGKE------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNN 168
           PNGKE            GEREFQAEVEIISRVHHKHLVSLVGY   GSQR+LVYEFV NN
Sbjct: 320 PNGKEVAVKQLKAGSGQGEREFQAEVEIISRVHHKHLVSLVGYCITGSQRLLVYEFVPNN 379

Query: 169 TLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHDDL-----------ANILLDFKFEAK 217
           TL FHLHG+G+PTMDWPTR++IALGSAKGLAYLH+D            ANILLDFKFEAK
Sbjct: 380 TLEFHLHGRGRPTMDWPTRLRIALGSAKGLAYLHEDCHPKIIHRDIKAANILLDFKFEAK 439

Query: 218 VADFGLAKIASDVNTHVSTRVMGTFG 243
           VADFGLAK +SDVNTHVSTRVMGTFG
Sbjct: 440 VADFGLAKFSSDVNTHVSTRVMGTFG 465

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443147|ref|XP_004139342.1| PREDICTED: proline-rich receptor-like protein kinase PERK1-like [Cucumis sativus] gi|449516294|ref|XP_004165182.1| PREDICTED: proline-rich receptor-like protein kinase PERK1-like [Cucumis sativus]

 Score =  305 bits (780), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 178/267 (66%), Positives = 191/267 (71%), Gaps = 26/267 (9%)

Query: 1   DPYGGRQQHWQQNVPPPAAHVVTQPPRSSPPPLVASSPPHSPVYTPSPPLPPP-PFMSNS 59
           DPY G+QQ WQ N P P   +V   P+ SPPP+VAS PPHSP     PPLPPP    S+ 
Sbjct: 203 DPYAGQQQ-WQNNAPLPPDPLVGMVPKPSPPPVVASRPPHSPTGI-RPPLPPPLYMSSSG 260

Query: 60  GGSGSNYSGSEAPILPQSPGLSLGFSKSTFTYEELARATDGFSDANLLRQDGFGYVHRGV 119
           G              P  P ++ GFSKSTFTYEELA ATDGFSDANLL Q GFGYVHRGV
Sbjct: 261 GSGSMYSGPETPLPPPPPPHMAYGFSKSTFTYEELAMATDGFSDANLLGQGGFGYVHRGV 320

Query: 120 LPNGKE------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLN 167
           LPNGKE            GEREFQAEV+IISRVHHKHLVSLVGY   GSQR+LVYEFV N
Sbjct: 321 LPNGKEVAVKQLKAGSGQGEREFQAEVDIISRVHHKHLVSLVGYCITGSQRLLVYEFVAN 380

Query: 168 NTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHDDL-----------ANILLDFKFEA 216
           NTL FHLHGKG+PTMDW TR+KIALGSAKGLAY+H+D            ANILLDFKFEA
Sbjct: 381 NTLEFHLHGKGRPTMDWQTRLKIALGSAKGLAYIHEDCHPKIIHRDIKAANILLDFKFEA 440

Query: 217 KVADFGLAKIASDVNTHVSTRVMGTFG 243
           KVADFGLAK  SDVNTHVSTRVMGTFG
Sbjct: 441 KVADFGLAKFTSDVNTHVSTRVMGTFG 467

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442587|ref|XP_002279197.1| PREDICTED: proline-rich receptor-like protein kinase PERK1 [Vitis vinifera] gi|297743250|emb|CBI36117.3| unnamed protein product [Vitis vinifera]

 Score =  301 bits (771), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 162/259 (62%), Positives = 180/259 (69%), Gaps = 35/259 (13%)

Query: 8   QHWQQNVPPPAAHVVTQPPRSSPPPLVASSPPHSPVYTPSPPLPPPPFMSNSGGSGSNYS 67
           QHWQQN   P  +     P+ +P   + S P  SPV+ P+ P PP   +           
Sbjct: 103 QHWQQNAHQPTNNTDPMLPKHAPLLSIGSKPQLSPVHIPASP-PPMGIL----------- 150

Query: 68  GSEAPILPQSPGLSLGFSKSTFTYEELARATDGFSDANLLRQDGFGYVHRGVLPNGKE-- 125
           G+E P+ P SPG+SLGFSKS FTYEELA ATDGFS+ NLL Q GFGYVH+GVLPNG+E  
Sbjct: 151 GTEKPLAPPSPGISLGFSKSAFTYEELAIATDGFSNINLLGQGGFGYVHKGVLPNGREVA 210

Query: 126 ----------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLH 175
                     GEREFQAEVEIISRVHHKHLVSLVGY T G+QRMLVYEFV N TL  HLH
Sbjct: 211 IKHLKAGSGQGEREFQAEVEIISRVHHKHLVSLVGYCTTGAQRMLVYEFVPNGTLQHHLH 270

Query: 176 GKGQPTMDWPTRIKIALGSAKGLAYLHDDL-----------ANILLDFKFEAKVADFGLA 224
           G G+PTM+W TRIKIALGSAKGLAYLH+D            ANILLD  FEAKVADFGLA
Sbjct: 271 GTGRPTMNWATRIKIALGSAKGLAYLHEDCHPKIIHRDIKAANILLDHNFEAKVADFGLA 330

Query: 225 KIASDVNTHVSTRVMGTFG 243
           K ASD +THVSTRVMGTFG
Sbjct: 331 KFASDTDTHVSTRVMGTFG 349

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357134253|ref|XP_003568732.1| PREDICTED: proline-rich receptor-like protein kinase PERK1-like [Brachypodium distachyon]

 Score =  301 bits (770), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 172/267 (64%), Positives = 189/267 (70%), Gaps = 33/267 (12%)

Query: 1   DPYGGRQQHWQQNVPPPA-AHVVTQPPRSSPPPLVASSPPHSPVYTPSPPLPPPPFMSNS 59
           DPYGG  Q WQQN PPP   HVV   P  SPPP  A+ PP +P   P P       M NS
Sbjct: 186 DPYGGTYQSWQQNAPPPPPDHVVKMHP--SPPPAYANRPPQAPPPPPPP-------MINS 236

Query: 60  GGSGSNYSGSEAPILPQSPGLSLGFSKSTFTYEELARATDGFSDANLLRQDGFGYVHRGV 119
            G   +       + P SPG +LGFSKSTFTYEEL RATDGFSDANLL Q GFGYVH+GV
Sbjct: 237 SGGSGSNYSGGEILPPPSPGTALGFSKSTFTYEELVRATDGFSDANLLGQGGFGYVHKGV 296

Query: 120 LPNGKE------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLN 167
           LPNGKE            GEREFQAEVEIISRVHHKHLVSLVGY  +G +R+LVYEFV N
Sbjct: 297 LPNGKEIAVKQLKLGSGQGEREFQAEVEIISRVHHKHLVSLVGYCISGGKRLLVYEFVTN 356

Query: 168 NTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHDDL-----------ANILLDFKFEA 216
           NTL FHLHGKG+P M+WPTR++IALG+AKGLAY+H+D            +NILLDFKFEA
Sbjct: 357 NTLEFHLHGKGRPVMEWPTRLRIALGAAKGLAYIHEDCHPKIIHRDIKSSNILLDFKFEA 416

Query: 217 KVADFGLAKIASDVNTHVSTRVMGTFG 243
           KVADFGLAK  SD NTHVSTRVMGTFG
Sbjct: 417 KVADFGLAKFTSDNNTHVSTRVMGTFG 443

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725713|ref|NP_001237102.1| putative receptor protein kinase PERK1 [Glycine max] gi|77403742|dbj|BAE46451.1| putative receptor protein kinase PERK1 [Glycine max] gi|223452349|gb|ACM89502.1| PERK1-like protein kinase [Glycine max]

 Score =  301 bits (770), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 151/192 (78%), Positives = 159/192 (82%), Gaps = 23/192 (11%)

Query: 75  PQSPGLSLGFSKSTFTYEELARATDGFSDANLLRQDGFGYVHRGVLPNGKE--------- 125
           P SPG+SLGFSKSTFTYEELARATDGFSDANLL Q GFGYVHRG+LPNGKE         
Sbjct: 45  PPSPGISLGFSKSTFTYEELARATDGFSDANLLGQGGFGYVHRGILPNGKEVAVKQLKAG 104

Query: 126 ---GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTM 182
              GEREFQAEVEIISRVHHKHLVSLVGY   GSQR+LVYEFV NNTL FHLHGKG+PTM
Sbjct: 105 SGQGEREFQAEVEIISRVHHKHLVSLVGYCITGSQRLLVYEFVPNNTLEFHLHGKGRPTM 164

Query: 183 DWPTRIKIALGSAKGLAYLHDDL-----------ANILLDFKFEAKVADFGLAKIASDVN 231
           DWPTR++IALGSAKGLAYLH+D            ANILLDFKFEAKVADFGLAK +SDVN
Sbjct: 165 DWPTRLRIALGSAKGLAYLHEDCHPKIIHRDIKSANILLDFKFEAKVADFGLAKFSSDVN 224

Query: 232 THVSTRVMGTFG 243
           THVSTRVMGTFG
Sbjct: 225 THVSTRVMGTFG 236

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147828268|emb|CAN75405.1| hypothetical protein VITISV_010509 [Vitis vinifera]

 Score =  300 bits (769), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 162/259 (62%), Positives = 180/259 (69%), Gaps = 35/259 (13%)

Query: 8   QHWQQNVPPPAAHVVTQPPRSSPPPLVASSPPHSPVYTPSPPLPPPPFMSNSGGSGSNYS 67
           QHWQQN   P  +     P+ +P   + S P  SPV+ P+ P PP   +           
Sbjct: 155 QHWQQNAHQPTNNTDPMLPKHAPLLSIGSKPQLSPVHIPASP-PPMGIL----------- 202

Query: 68  GSEAPILPQSPGLSLGFSKSTFTYEELARATDGFSDANLLRQDGFGYVHRGVLPNGKE-- 125
           G+E P+ P SPG+SLGFSKS FTYEELA ATDGFS+ NLL Q GFGYVH+GVLPNG+E  
Sbjct: 203 GTEKPLAPPSPGISLGFSKSAFTYEELAIATDGFSNINLLGQGGFGYVHKGVLPNGREVA 262

Query: 126 ----------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLH 175
                     GEREFQAEVEIISRVHHKHLVSLVGY T G+QRMLVYEFV N TL  HLH
Sbjct: 263 IKHLKAGSGQGEREFQAEVEIISRVHHKHLVSLVGYCTTGAQRMLVYEFVPNGTLQHHLH 322

Query: 176 GKGQPTMDWPTRIKIALGSAKGLAYLHDDL-----------ANILLDFKFEAKVADFGLA 224
           G G+PTM+W TRIKIALGSAKGLAYLH+D            ANILLD  FEAKVADFGLA
Sbjct: 323 GTGRPTMNWATRIKIALGSAKGLAYLHEDCHPKIIHRDIKAANILLDHNFEAKVADFGLA 382

Query: 225 KIASDVNTHVSTRVMGTFG 243
           K ASD +THVSTRVMGTFG
Sbjct: 383 KFASDTDTHVSTRVMGTFG 401

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|53982302|gb|AAV25281.1| putative protein kinase [Oryza sativa Japonica Group]

 Score =  299 bits (765), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 177/268 (66%), Positives = 192/268 (71%), Gaps = 35/268 (13%)

Query: 1   DPYGGR-QQHWQQNVPPPA-AHVVTQPPRSSPPPLVASSPPHSPVYTPSPPLPPPPFMSN 58
           D YGG  QQ WQQN PPP   HVV   P  SPPP  A+ PP  P   P+        M N
Sbjct: 5   DAYGGSYQQSWQQNAPPPPPEHVVKMHP--SPPPAYANRPPQPPSTPPAA-------MIN 55

Query: 59  SGGSGSNYSGSEAPILPQSPGLSLGFSKSTFTYEELARATDGFSDANLLRQDGFGYVHRG 118
           S G   +YSG E  + P SPG +LGFSKSTFTYEEL RATDGFSDANLL Q GFGYVHRG
Sbjct: 56  SSGGSGSYSGGEI-LPPPSPGAALGFSKSTFTYEELLRATDGFSDANLLGQGGFGYVHRG 114

Query: 119 VLPNGKE------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVL 166
           VLP GKE            GEREFQAEVEIISRVHHKHLVSLVGY  +G +R+LVYEFV 
Sbjct: 115 VLPTGKEIAVKQLKVGSGQGEREFQAEVEIISRVHHKHLVSLVGYCISGGKRLLVYEFVP 174

Query: 167 NNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHDDL-----------ANILLDFKFE 215
           NNTL FHLHGKG+PTM+WPTR+KIALG+AKGLAYLH+D            +NILLDFKFE
Sbjct: 175 NNTLEFHLHGKGRPTMEWPTRLKIALGAAKGLAYLHEDCHPKIIHRDIKASNILLDFKFE 234

Query: 216 AKVADFGLAKIASDVNTHVSTRVMGTFG 243
           +KVADFGLAK  SD NTHVSTRVMGTFG
Sbjct: 235 SKVADFGLAKFTSDNNTHVSTRVMGTFG 262

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	243
UNIPROTKB|Q9ARH1	647	Q9ARH1 "Receptor protein kinas	0.716	0.268	0.717	6.7e-75
TAIR|locus:2091722	652	PERK1 "proline-rich extensin-l	0.716	0.266	0.717	7.6e-74
TAIR|locus:2010282	699	PERK7 "proline-rich extensin-l	0.711	0.247	0.671	8.8e-63
TAIR|locus:2093999	700	PERK6 "proline-rich extensin-l	0.695	0.241	0.656	6.9e-61
TAIR|locus:2046268	633	PERK4 "proline-rich extensin-l	0.707	0.271	0.668	1.5e-60
TAIR|locus:2139474	670	PERK5 "proline-rich extensin-l	0.699	0.253	0.647	1.9e-60
TAIR|locus:2018209	509	PERK15 "proline-rich extensin-	0.650	0.310	0.585	2.5e-49
TAIR|locus:2026846	710	PERK13 "proline-rich extensin-	0.666	0.228	0.567	4.7e-48
TAIR|locus:2125692	731	PERK14 "proline-rich extensin-	0.670	0.222	0.571	1.2e-47
TAIR|locus:2026925	708	PERK9 "proline-rich extensin-l	0.687	0.235	0.513	4.9e-47

UNIPROTKB|Q9ARH1 Q9ARH1 "Receptor protein kinase PERK1" [Brassica napus (taxid:3708)]

 Score = 686 (246.5 bits), Expect = 6.7e-75, Sum P(2) = 6.7e-75
 Identities = 142/198 (71%), Positives = 160/198 (80%)

Query:    70 EAPILPQ-SPGLSLGFSKSTFTYEELARATDGFSDANLLRQDGFGYVHRGVLPNGKE--- 125
             + P+LP  SPGL LGFSKSTFTYEELARAT+GFS+ANLL Q GFGYVH+GVLP+GKE   
Sbjct:   243 DRPVLPPPSPGLVLGFSKSTFTYEELARATNGFSEANLLGQGGFGYVHKGVLPSGKEVAV 302

Query:   126 ---------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHG 176
                      GEREFQAEVEIISRVHH+HLVSLVGY  AG++R+LVYEFV NN L  HLHG
Sbjct:   303 KQLKVGSGQGEREFQAEVEIISRVHHRHLVSLVGYCIAGAKRLLVYEFVPNNNLELHLHG 362

Query:   177 KGQPTMDWPTRIKIALGSAKGLAYLHDDL-----------ANILLDFKFEAKVADFGLAK 225
             +G+PTM+W TR+KIALGSAKGL+YLH+D            +NIL+DFKFEAKVADFGLAK
Sbjct:   363 EGRPTMEWSTRLKIALGSAKGLSYLHEDCNPKIIHRDIKASNILIDFKFEAKVADFGLAK 422

Query:   226 IASDVNTHVSTRVMGTFG 243
             IASD NTHVSTRVMGTFG
Sbjct:   423 IASDTNTHVSTRVMGTFG 440

GO:0004674 "protein serine/threonine kinase activity" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=IDA

TAIR|locus:2091722 PERK1 "proline-rich extensin-like receptor kinase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 692 (248.7 bits), Expect = 7.6e-74, Sum P(2) = 7.6e-74
 Identities = 142/198 (71%), Positives = 160/198 (80%)

Query:    70 EAPILPQ-SPGLSLGFSKSTFTYEELARATDGFSDANLLRQDGFGYVHRGVLPNGKE--- 125
             + P+LP  SPGL LGFSKSTFTYEEL+RAT+GFS+ANLL Q GFGYVH+G+LP+GKE   
Sbjct:   248 DLPVLPPPSPGLVLGFSKSTFTYEELSRATNGFSEANLLGQGGFGYVHKGILPSGKEVAV 307

Query:   126 ---------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHG 176
                      GEREFQAEVEIISRVHH+HLVSL+GY  AG QR+LVYEFV NN L FHLHG
Sbjct:   308 KQLKAGSGQGEREFQAEVEIISRVHHRHLVSLIGYCMAGVQRLLVYEFVPNNNLEFHLHG 367

Query:   177 KGQPTMDWPTRIKIALGSAKGLAYLHDDL-----------ANILLDFKFEAKVADFGLAK 225
             KG+PTM+W TR+KIALGSAKGL+YLH+D            +NIL+DFKFEAKVADFGLAK
Sbjct:   368 KGRPTMEWSTRLKIALGSAKGLSYLHEDCNPKIIHRDIKASNILIDFKFEAKVADFGLAK 427

Query:   226 IASDVNTHVSTRVMGTFG 243
             IASD NTHVSTRVMGTFG
Sbjct:   428 IASDTNTHVSTRVMGTFG 445

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;IDA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;ISS;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009611 "response to wounding" evidence=ISS

GO:0009620 "response to fungus" evidence=ISS

GO:0046777 "protein autophosphorylation" evidence=IDA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

GO:0052541 "plant-type cell wall cellulose metabolic process" evidence=RCA

GO:0052546 "cell wall pectin metabolic process" evidence=RCA

TAIR|locus:2010282 PERK7 "proline-rich extensin-like receptor kinase 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 621 (223.7 bits), Expect = 8.8e-63, Sum P(2) = 8.8e-63
 Identities = 133/198 (67%), Positives = 148/198 (74%)

Query:    71 APILPQS-PGLSLGFSKSTFTYEELARATDGFSDANLLRQDGFGYVHRGVLPNGKE---- 125
             AP LP   P ++LGF+ STFTYEELA AT GFS   LL Q GFGYVH+G+LPNGKE    
Sbjct:   305 APSLPPPHPSVALGFNNSTFTYEELASATQGFSKDRLLGQGGFGYVHKGILPNGKEIAVK 364

Query:   126 --------GEREFQAEVEIISRVHHKHLVSLVGYYT-AGSQRMLVYEFVLNNTLVFHLHG 176
                     GEREFQAEVEIISRVHH+HLVSLVGY + AG QR+LVYEF+ N+TL FHLHG
Sbjct:   365 SLKAGSGQGEREFQAEVEIISRVHHRHLVSLVGYCSNAGGQRLLVYEFLPNDTLEFHLHG 424

Query:   177 KGQPTMDWPTRIKIALGSAKGLAYLHDDL-----------ANILLDFKFEAKVADFGLAK 225
             K    MDWPTR+KIALGSAKGLAYLH+D            +NILLD  FEAKVADFGLAK
Sbjct:   425 KSGTVMDWPTRLKIALGSAKGLAYLHEDCHPKIIHRDIKASNILLDHNFEAKVADFGLAK 484

Query:   226 IASDVNTHVSTRVMGTFG 243
             ++ D NTHVSTRVMGTFG
Sbjct:   485 LSQDNNTHVSTRVMGTFG 502

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

TAIR|locus:2093999 PERK6 "proline-rich extensin-like receptor kinase 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 606 (218.4 bits), Expect = 6.9e-61, Sum P(2) = 6.9e-61
 Identities = 126/192 (65%), Positives = 144/192 (75%)

Query:    75 PQSPGLSLGFSKSTFTYEELARATDGFSDANLLRQDGFGYVHRGVLPNGKE--------- 125
             P  P ++LGF+KSTFTY+ELA AT GFS + LL Q GFGYVH+G+LPNGKE         
Sbjct:   311 PPHPSVALGFNKSTFTYDELAAATQGFSQSRLLGQGGFGYVHKGILPNGKEIAVKSLKAG 370

Query:   126 ---GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTM 182
                GEREFQAEV+IISRVHH+ LVSLVGY  AG QRMLVYEF+ N+TL FHLHGK    +
Sbjct:   371 SGQGEREFQAEVDIISRVHHRFLVSLVGYCIAGGQRMLVYEFLPNDTLEFHLHGKSGKVL 430

Query:   183 DWPTRIKIALGSAKGLAYLHDDL-----------ANILLDFKFEAKVADFGLAKIASDVN 231
             DWPTR+KIALGSAKGLAYLH+D            +NILLD  FEAKVADFGLAK++ D  
Sbjct:   431 DWPTRLKIALGSAKGLAYLHEDCHPRIIHRDIKASNILLDESFEAKVADFGLAKLSQDNV 490

Query:   232 THVSTRVMGTFG 243
             THVSTR+MGTFG
Sbjct:   491 THVSTRIMGTFG 502

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

TAIR|locus:2046268 PERK4 "proline-rich extensin-like receptor kinase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
 Identities = 131/196 (66%), Positives = 150/196 (76%)

Query:    72 PILPQ-SPGLSLGFSKSTFTYEELARATDGFSDANLLRQDGFGYVHRGVLPNGKE----- 125
             P+LP  SP L+LGF+KSTFTY+ELA AT GF+DANLL Q GFGYVH+GVLP+GKE     
Sbjct:   254 PVLPPPSPALALGFNKSTFTYQELAAATGGFTDANLLGQGGFGYVHKGVLPSGKEVAVKS 313

Query:   126 -------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKG 178
                    GEREFQAEV+IISRVHH++LVSLVGY  A  QRMLVYEFV N TL +HLHGK 
Sbjct:   314 LKAGSGQGEREFQAEVDIISRVHHRYLVSLVGYCIADGQRMLVYEFVPNKTLEYHLHGKN 373

Query:   179 QPTMDWPTRIKIALGSAKGLAYLHDDL-----------ANILLDFKFEAKVADFGLAKIA 227
              P M++ TR++IALG+AKGLAYLH+D            ANILLDF F+A VADFGLAK+ 
Sbjct:   374 LPVMEFSTRLRIALGAAKGLAYLHEDCHPRIIHRDIKSANILLDFNFDAMVADFGLAKLT 433

Query:   228 SDVNTHVSTRVMGTFG 243
             SD NTHVSTRVMGTFG
Sbjct:   434 SDNNTHVSTRVMGTFG 449

GO:0004672 "protein kinase activity" evidence=IEA;ISS;IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=IMP

GO:0009845 "seed germination" evidence=IMP

GO:0019722 "calcium-mediated signaling" evidence=IMP

GO:0048364 "root development" evidence=IMP

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

TAIR|locus:2139474 PERK5 "proline-rich extensin-like receptor kinase 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 619 (223.0 bits), Expect = 1.9e-60, P = 1.9e-60
 Identities = 125/193 (64%), Positives = 148/193 (76%)

Query:    74 LPQSPGLSLGFSKSTFTYEELARATDGFSDANLLRQDGFGYVHRGVLPNGKE-------- 125
             +P     +LG ++STFTY+EL+ AT+GF+ +NLL Q GFGYVH+GVLP+GKE        
Sbjct:   285 IPSPQAATLGHNQSTFTYDELSIATEGFAQSNLLGQGGFGYVHKGVLPSGKEVAVKSLKL 344

Query:   126 ----GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPT 181
                 GEREFQAEV+IISRVHH+HLVSLVGY  +G QR+LVYEF+ NNTL FHLHGKG+P 
Sbjct:   345 GSGQGEREFQAEVDIISRVHHRHLVSLVGYCISGGQRLLVYEFIPNNTLEFHLHGKGRPV 404

Query:   182 MDWPTRIKIALGSAKGLAYLHDDL-----------ANILLDFKFEAKVADFGLAKIASDV 230
             +DWPTR+KIALGSA+GLAYLH+D            ANILLDF FE KVADFGLAK++ D 
Sbjct:   405 LDWPTRVKIALGSARGLAYLHEDCHPRIIHRDIKAANILLDFSFETKVADFGLAKLSQDN 464

Query:   231 NTHVSTRVMGTFG 243
              THVSTRVMGTFG
Sbjct:   465 YTHVSTRVMGTFG 477

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0046777 "protein autophosphorylation" evidence=IDA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0048610 "cellular process involved in reproduction" evidence=RCA

GO:0048868 "pollen tube development" evidence=RCA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

TAIR|locus:2018209 PERK15 "proline-rich extensin-like receptor kinase 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
 Identities = 106/181 (58%), Positives = 132/181 (72%)

Query:    86 KSTFTYEELARATDGFSDANLLRQDGFGYVHRGVLPNGK------------EGEREFQAE 133
             ++ FTYE+L++AT  FS+ NLL Q GFGYVHRGVL +G             +GEREFQAE
Sbjct:   128 QNLFTYEDLSKATSNFSNTNLLGQGGFGYVHRGVLVDGTLVAIKQLKSGSGQGEREFQAE 187

Query:   134 VEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALG 193
             ++ ISRVHH+HLVSL+GY   G+QR+LVYEFV N TL FHLH K +P M+W  R+KIALG
Sbjct:   188 IQTISRVHHRHLVSLLGYCITGAQRLLVYEFVPNKTLEFHLHEKERPVMEWSKRMKIALG 247

Query:   194 SAKGLAYLHDDL-----------ANILLDFKFEAKVADFGLAKIASDVNTHVSTRVMGTF 242
             +AKGLAYLH+D            ANIL+D  +EAK+ADFGLA+ + D +THVSTR+MGTF
Sbjct:   248 AAKGLAYLHEDCNPKTIHRDVKAANILIDDSYEAKLADFGLARSSLDTDTHVSTRIMGTF 307

Query:   243 G 243
             G
Sbjct:   308 G 308

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

TAIR|locus:2026846 PERK13 "proline-rich extensin-like receptor kinase 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
 Identities = 105/185 (56%), Positives = 132/185 (71%)

Query:    82 LGFSKSTFTYEELARATDGFSDANLLRQDGFGYVHRGVLPNGK------------EGERE 129
             +G  ++ FTYEEL   T+GFS  N+L + GFG V++G L +GK            +G+RE
Sbjct:   334 MGSGQTHFTYEELTDITEGFSKHNILGEGGFGCVYKGKLNDGKLVAVKQLKVGSGQGDRE 393

Query:   130 FQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIK 189
             F+AEVEIISRVHH+HLVSLVGY  A S+R+L+YE+V N TL  HLHGKG+P ++W  R++
Sbjct:   394 FKAEVEIISRVHHRHLVSLVGYCIADSERLLIYEYVPNQTLEHHLHGKGRPVLEWARRVR 453

Query:   190 IALGSAKGLAYLHDDL-----------ANILLDFKFEAKVADFGLAKIASDVNTHVSTRV 238
             IA+GSAKGLAYLH+D            ANILLD +FEA+VADFGLAK+     THVSTRV
Sbjct:   454 IAIGSAKGLAYLHEDCHPKIIHRDIKSANILLDDEFEAQVADFGLAKLNDSTQTHVSTRV 513

Query:   239 MGTFG 243
             MGTFG
Sbjct:   514 MGTFG 518

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

TAIR|locus:2125692 PERK14 "proline-rich extensin-like receptor kinase 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 500 (181.1 bits), Expect = 1.2e-47, P = 1.2e-47
 Identities = 108/189 (57%), Positives = 130/189 (68%)

Query:    81 SLGFSKSTFTYEELARATDGFSDANLLRQDGFGYVHRGVLPNGKE------------GER 128
             ++      F+YEEL++AT GFS+ NLL + GFGYVH+GVL NG E            GER
Sbjct:   369 NISMPSGMFSYEELSKATGGFSEENLLGEGGFGYVHKGVLKNGTEVAVKQLKIGSYQGER 428

Query:   129 EFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRI 188
             EFQAEV+ ISRVHHKHLVSLVGY   G +R+LVYEFV  +TL FHLH      ++W  R+
Sbjct:   429 EFQAEVDTISRVHHKHLVSLVGYCVNGDKRLLVYEFVPKDTLEFHLHENRGSVLEWEMRL 488

Query:   189 KIALGSAKGLAYLHDDL-----------ANILLDFKFEAKVADFGLAKIASDVN---THV 234
             +IA+G+AKGLAYLH+D            ANILLD KFEAKV+DFGLAK  SD N   TH+
Sbjct:   489 RIAVGAAKGLAYLHEDCSPTIIHRDIKAANILLDSKFEAKVSDFGLAKFFSDTNSSFTHI 548

Query:   235 STRVMGTFG 243
             STRV+GTFG
Sbjct:   549 STRVVGTFG 557

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2026925 PERK9 "proline-rich extensin-like receptor kinase 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 493 (178.6 bits), Expect = 4.9e-47, P = 4.9e-47
 Identities = 98/191 (51%), Positives = 139/191 (72%)

Query:    76 QSPGLSLGFSKSTFTYEELARATDGFSDANLLRQDGFGYVHRGVLPNGK----------- 124
             QS    LG SK+ F+YEEL +AT+GFS  NLL + GFG V++G+LP+G+           
Sbjct:   352 QSQSGGLGNSKALFSYEELVKATNGFSQENLLGEGGFGCVYKGILPDGRVVAVKQLKIGG 411

Query:   125 -EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMD 183
              +G+REF+AEVE +SR+HH+HLVS+VG+  +G +R+L+Y++V NN L FHLHG+ +  +D
Sbjct:   412 GQGDREFKAEVETLSRIHHRHLVSIVGHCISGDRRLLIYDYVSNNDLYFHLHGE-KSVLD 470

Query:   184 WPTRIKIALGSAKGLAYLHDDL-----------ANILLDFKFEAKVADFGLAKIASDVNT 232
             W TR+KIA G+A+GLAYLH+D            +NILL+  F+A+V+DFGLA++A D NT
Sbjct:   471 WATRVKIAAGAARGLAYLHEDCHPRIIHRDIKSSNILLEDNFDARVSDFGLARLALDCNT 530

Query:   233 HVSTRVMGTFG 243
             H++TRV+GTFG
Sbjct:   531 HITTRVIGTFG 541

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LV48	PERK1_ARATH	2, ., 7, ., 1, 1, ., 1	0.7244	0.7078	0.2638	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.7.11.1	LOW CONFIDENCE prediction!
3rd Layer	2.7.11	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: 4338122 retrotransposon protein, putative, unclassified, expressed (675 aa) (Oryza sativa Japonica)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	243
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	4e-24
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	2e-22
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	1e-21
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	2e-21
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	2e-21
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	2e-17
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	1e-16
cd05039	256	cd05039, PTKc_Csk_like, Catalytic domain of C-term	4e-15
cd05060	257	cd05060, PTKc_Syk_like, Catalytic domain of Spleen	6e-13
cd05148	261	cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro	8e-13
cd05068	261	cd05068, PTKc_Frk_like, Catalytic domain of Fyn-re	1e-12
cd05033	266	cd05033, PTKc_EphR, Catalytic domain of Ephrin Rec	2e-11
cd05038	284	cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai	4e-11
cd05049	280	cd05049, PTKc_Trk, Catalytic domain of the Protein	4e-11
cd05081	284	cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2)	1e-10
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	2e-10
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	7e-10
cd05083	254	cd05083, PTKc_Chk, Catalytic domain of the Protein	9e-10
cd05082	256	cd05082, PTKc_Csk, Catalytic domain of the Protein	1e-09
cd05034	261	cd05034, PTKc_Src_like, Catalytic domain of Src ki	2e-09
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	3e-09
cd05057	279	cd05057, PTKc_EGFR_like, Catalytic domain of Epide	7e-09
cd05052	263	cd05052, PTKc_Abl, Catalytic domain of the Protein	1e-08
cd05112	256	cd05112, PTKc_Itk, Catalytic domain of the Protein	3e-08
cd07841	298	cd07841, STKc_CDK7, Catalytic domain of the Serine	6e-08
cd05066	267	cd05066, PTKc_EphR_A, Catalytic domain of the Prot	1e-07
cd05123	250	cd05123, STKc_AGC, Catalytic domain of AGC family	2e-07
cd05067	260	cd05067, PTKc_Lck_Blk, Catalytic domain of the Pro	3e-07
cd05059	256	cd05059, PTKc_Tec_like, Catalytic domain of Tec-li	3e-07
cd05092	280	cd05092, PTKc_TrkA, Catalytic domain of the Protei	3e-07
cd05071	262	cd05071, PTKc_Src, Catalytic domain of the Protein	5e-07
cd06607	307	cd06607, STKc_TAO, Catalytic domain of the Protein	5e-07
cd05048	283	cd05048, PTKc_Ror, Catalytic Domain of the Protein	5e-07
cd05040	257	cd05040, PTKc_Ack_like, Catalytic domain of the Pr	6e-07
cd05041	251	cd05041, PTKc_Fes_like, Catalytic domain of Fes-li	6e-07
cd05065	269	cd05065, PTKc_EphR_B, Catalytic domain of the Prot	6e-07
cd07832	286	cd07832, STKc_CCRK, Catalytic domain of the Serine	7e-07
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	7e-07
cd05055	302	cd05055, PTKc_PDGFR, Catalytic domain of the Prote	8e-07
cd07840	287	cd07840, STKc_CDK9_like, Catalytic domain of Cycli	1e-06
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	1e-06
cd05063	268	cd05063, PTKc_EphR_A2, Catalytic domain of the Pro	2e-06
cd05032	277	cd05032, PTKc_InsR_like, Catalytic domain of Insul	2e-06
cd05113	256	cd05113, PTKc_Btk_Bmx, Catalytic domain of the Pro	3e-06
cd05070	260	cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Pro	3e-06
cd05088	303	cd05088, PTKc_Tie2, Catalytic domain of the Protei	3e-06
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	4e-06
cd06635	317	cd06635, STKc_TAO1, Catalytic domain of the Protei	5e-06
cd05072	261	cd05072, PTKc_Lyn, Catalytic domain of the Protein	5e-06
cd06612	256	cd06612, STKc_MST1_2, Catalytic domain of the Prot	7e-06
cd07829	282	cd07829, STKc_CDK_like, Catalytic domain of Cyclin	1e-05
cd06623	264	cd06623, PKc_MAPKK_plant_like, Catalytic domain of	1e-05
cd05097	295	cd05097, PTKc_DDR_like, Catalytic domain of Discoi	1e-05
cd06629	272	cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain o	2e-05
cd05093	288	cd05093, PTKc_TrkB, Catalytic domain of the Protei	2e-05
cd05094	291	cd05094, PTKc_TrkC, Catalytic domain of the Protei	2e-05
cd05118	283	cd05118, STKc_CMGC, Catalytic domain of CMGC famil	3e-05
cd08220	256	cd08220, STKc_Nek8, Catalytic domain of the Protei	3e-05
cd05111	279	cd05111, PTK_HER3, Pseudokinase domain of the Prot	3e-05
cd05589	324	cd05589, STKc_PKN, Catalytic domain of the Protein	4e-05
cd05069	260	cd05069, PTKc_Yes, Catalytic domain of the Protein	4e-05
cd06634	308	cd06634, STKc_TAO2, Catalytic domain of the Protei	4e-05
cd06633	313	cd06633, STKc_TAO3, Catalytic domain of the Protei	4e-05
cd05577	277	cd05577, STKc_GRK, Catalytic domain of the Protein	4e-05
cd08529	256	cd08529, STKc_FA2-like, Catalytic domain of the Pr	5e-05
cd05096	304	cd05096, PTKc_DDR1, Catalytic domain of the Protei	5e-05
cd05079	284	cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) doma	6e-05
cd05036	277	cd05036, PTKc_ALK_LTK, Catalytic domain of the Pro	8e-05
cd05050	288	cd05050, PTKc_Musk, Catalytic domain of the Protei	9e-05
cd05062	277	cd05062, PTKc_IGF-1R, Catalytic domain of the Prot	9e-05
cd05085	250	cd05085, PTKc_Fer, Catalytic domain of the Protein	1e-04
cd05058	262	cd05058, PTKc_Met_Ron, Catalytic domain of the Pro	1e-04
cd07833	288	cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dep	1e-04
cd05090	283	cd05090, PTKc_Ror1, Catalytic domain of the Protei	1e-04
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	1e-04
cd05584	323	cd05584, STKc_p70S6K, Catalytic domain of the Prot	1e-04
cd05581	280	cd05581, STKc_PDK1, Catalytic domain of the Protei	2e-04
cd05084	252	cd05084, PTKc_Fes, Catalytic domain of the Protein	2e-04
TIGR03903	1266	TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclas	2e-04
cd05110	303	cd05110, PTKc_HER4, Catalytic domain of the Protei	2e-04
cd05580	290	cd05580, STKc_PKA, Catalytic domain of the Protein	2e-04
cd07835	283	cd07835, STKc_CDK1_like, Catalytic domain of Cycli	2e-04
cd05073	260	cd05073, PTKc_Hck, Catalytic domain of the Protein	3e-04
cd05080	283	cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) doma	3e-04
cd06605	265	cd06605, PKc_MAPKK, Catalytic domain of the dual-s	3e-04
PLN00034	353	PLN00034, PLN00034, mitogen-activated protein kina	4e-04
cd05051	296	cd05051, PTKc_DDR, Catalytic domain of the Protein	4e-04
cd05578	258	cd05578, STKc_Yank1, Catalytic domain of the Prote	4e-04
cd05630	285	cd05630, STKc_GRK6, Catalytic domain of the Protei	5e-04
cd08217	265	cd08217, STKc_Nek2, Catalytic domain of the Protei	6e-04
PTZ00024	335	PTZ00024, PTZ00024, cyclin-dependent protein kinas	6e-04
PLN02983	274	PLN02983, PLN02983, biotin carboxyl carrier protei	0.001
cd08221	256	cd08221, STKc_Nek9, Catalytic domain of the Protei	0.001
cd05095	296	cd05095, PTKc_DDR2, Catalytic domain of the Protei	0.001
cd05099	314	cd05099, PTKc_FGFR4, Catalytic domain of the Prote	0.001
cd06640	277	cd06640, STKc_MST4, Catalytic domain of the Protei	0.001
cd05631	285	cd05631, STKc_GRK4, Catalytic domain of the Protei	0.001
cd07830	283	cd07830, STKc_MAK_like, Catalytic domain of Male g	0.001
cd05061	288	cd05061, PTKc_InsR, Catalytic domain of the Protei	0.001
cd05570	318	cd05570, STKc_PKC, Catalytic domain of the Protein	0.001
cd05044	269	cd05044, PTKc_c-ros, Catalytic domain of the Prote	0.002
cd05632	285	cd05632, STKc_GRK5, Catalytic domain of the Protei	0.002
cd07845	309	cd07845, STKc_CDK10, Catalytic domain of the Serin	0.002
cd06608	275	cd06608, STKc_myosinIII_like, Catalytic domain of	0.002
cd05605	285	cd05605, STKc_GRK4_like, Catalytic domain of G pro	0.002
cd05100	334	cd05100, PTKc_FGFR3, Catalytic domain of the Prote	0.002
cd05064	266	cd05064, PTKc_EphR_A10, Catalytic domain of the Pr	0.003
cd06610	267	cd06610, STKc_OSR1_SPAK, Catalytic domain of the P	0.003
cd05607	277	cd05607, STKc_GRK7, Catalytic domain of the Protei	0.003
cd05101	304	cd05101, PTKc_FGFR2, Catalytic domain of the Prote	0.003
cd05089	297	cd05089, PTKc_Tie1, Catalytic domain of the Protei	0.004
cd05098	307	cd05098, PTKc_FGFR1, Catalytic domain of the Prote	0.004

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score = 96.4 bits (241), Expect = 4e-24
 Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 27/140 (19%)

Query: 112 FGYVHRGVLPNGKEGE------------------REFQAEVEIISRVHHKHLVSLVGYYT 153
           FG V++G L    EG                    EF  E  I+ ++ H ++V L+G  T
Sbjct: 12  FGEVYKGTLKGDGEGTETKVAVKTLKEGASEEEREEFLEEASIMKKLSHPNIVRLLGVCT 71

Query: 154 AGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD------DLA- 206
            G    +V E++    L+  L   G+  +     +++AL  AKG+ YL        DLA 
Sbjct: 72  QGEPLYIVTEYMPGGDLLDFLRKHGEK-LTLKDLLQMALQIAKGMEYLESKNFVHRDLAA 130

Query: 207 -NILLDFKFEAKVADFGLAK 225
            N L+      K++DFGL++
Sbjct: 131 RNCLVTENLVVKISDFGLSR 150

Length = 258

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score = 91.8 bits (229), Expect = 2e-22
 Identities = 35/158 (22%), Positives = 60/158 (37%), Gaps = 32/158 (20%)

Query: 112 FGYVHRGVLPNGKEGER-----------------EFQAEVEIISRVHHKHLVSLVGYYTA 154
           FG V++G L                         +F  E  ++ ++ H ++V L+G  T 
Sbjct: 8   FGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPNVVRLLGVCTE 67

Query: 155 GSQRMLVYEFVLNNTLVFHLHGKGQP-------TMDWPTRIKIALGSAKGLAYLHD---- 203
                LV E++    L+ +L             T+     +  A+  AKG+ YL      
Sbjct: 68  EEPLYLVLEYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLASKKFV 127

Query: 204 --DLA--NILLDFKFEAKVADFGLAKIASDVNTHVSTR 237
             DLA  N L+      K++DFGL++   D + +    
Sbjct: 128 HRDLAARNCLVGEDLVVKISDFGLSRDVYDDDYYRKKT 165

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 89.9 bits (224), Expect = 1e-21
 Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 26/140 (18%)

Query: 112 FGYVHRGVLPNGK------------------EGEREFQAEVEIISRVHHKHLVSLVGYYT 153
           FG V++G L                      +   EF  E  I+ ++ H ++V L+G  T
Sbjct: 12  FGEVYKGTLKGKGDGKEVEVAVKTLKEDASEQQIEEFLREARIMRKLDHPNIVKLLGVCT 71

Query: 154 AGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD------DLA- 206
                M+V E++    L+ +L       +     +  AL  A+G+ YL        DLA 
Sbjct: 72  EEEPLMIVMEYMPGGDLLDYLRKNRPKELSLSDLLSFALQIARGMEYLESKNFIHRDLAA 131

Query: 207 -NILLDFKFEAKVADFGLAK 225
            N L+      K++DFGL++
Sbjct: 132 RNCLVGENLVVKISDFGLSR 151

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score = 88.4 bits (220), Expect = 2e-21
 Identities = 42/156 (26%), Positives = 68/156 (43%), Gaps = 25/156 (16%)

Query: 111 GFGYVHRGV--------------LPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGS 156
           GFG V+                   +      E   E+EI+ +++H ++V L G +   +
Sbjct: 5   GFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVFEDEN 64

Query: 157 QRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD------DL--ANI 208
              LV E+    +L   L  + +  +     ++I L   +GL YLH       DL   NI
Sbjct: 65  HLYLVMEYCEGGSL-KDLLKENEGKLSEDEILRILLQILEGLEYLHSNGIIHRDLKPENI 123

Query: 209 LLDFK-FEAKVADFGLAKIASDVNTHVSTRVMGTFG 243
           LLD    + K+ADFGL+K+ +   + + T V GT  
Sbjct: 124 LLDSDNGKVKLADFGLSKLLTSDKSLLKTIV-GTPA 158

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 89.1 bits (222), Expect = 2e-21
 Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 27/140 (19%)

Query: 112 FGYVHRGVL--PNGKEGE----------------REFQAEVEIISRVHHKHLVSLVGYYT 153
           FG V++G L    GK+                   EF  E  I+ ++ H ++V L+G  T
Sbjct: 12  FGEVYKGKLKGKGGKKKVEVAVKTLKEDASEQQIEEFLREARIMRKLDHPNVVKLLGVCT 71

Query: 154 AGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD------DLA- 206
                 +V E++    L+ +L  K +P +     +  AL  A+G+ YL        DLA 
Sbjct: 72  EEEPLYIVMEYMEGGDLLSYLR-KNRPKLSLSDLLSFALQIARGMEYLESKNFIHRDLAA 130

Query: 207 -NILLDFKFEAKVADFGLAK 225
            N L+      K++DFGL++
Sbjct: 131 RNCLVGENLVVKISDFGLSR 150

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 78.4 bits (194), Expect = 2e-17
 Identities = 40/126 (31%), Positives = 60/126 (47%), Gaps = 11/126 (8%)

Query: 124 KEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMD 183
            + ++  + E+ I+ R+ H ++V L+  +       LV E+     L  +L   G   + 
Sbjct: 39  SKKDQTARREIRILRRLSHPNIVRLIDAFEDKDHLYLVMEYCEGGDLFDYLSRGG--PLS 96

Query: 184 WPTRIKIALGSAKGLAYLHD------DL--ANILLDFKFEAKVADFGLAKIASDVNTHVS 235
                KIAL   +GL YLH       DL   NILLD     K+ADFGLAK     ++ ++
Sbjct: 97  EDEAKKIALQILRGLEYLHSNGIIHRDLKPENILLDENGVVKIADFGLAKKLLKSSSSLT 156

Query: 236 TRVMGT 241
           T V GT
Sbjct: 157 TFV-GT 161

Length = 260

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score = 76.0 bits (188), Expect = 1e-16
 Identities = 38/153 (24%), Positives = 57/153 (37%), Gaps = 26/153 (16%)

Query: 111 GFGYVHRGV--------------LPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGS 156
            FG V+                     K+       E++I+ ++ H ++V L   +    
Sbjct: 11  SFGKVYLARDKKTGKLVAIKVIKKKKIKKDRERILREIKILKKLKHPNIVRLYDVFEDED 70

Query: 157 QRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD------DL--ANI 208
           +  LV E+     L   L  +G+ + D              L YLH       DL   NI
Sbjct: 71  KLYLVMEYCEGGDLFDLLKKRGRLSEDE--ARFYLRQILSALEYLHSKGIVHRDLKPENI 128

Query: 209 LLDFKFEAKVADFGLAKIASDVNTHVSTRVMGT 241
           LLD     K+ADFGLA+        ++T V GT
Sbjct: 129 LLDEDGHVKLADFGLARQLDP-GEKLTTFV-GT 159

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

 Score = 72.0 bits (177), Expect = 4e-15
 Identities = 37/107 (34%), Positives = 59/107 (55%), Gaps = 8/107 (7%)

Query: 130 FQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIK 189
           F AE  +++ + H +LV L+G    G+   +V E++   +LV +L  +G+  +    ++ 
Sbjct: 47  FLAEASVMTTLRHPNLVQLLGVVLQGNPLYIVTEYMAKGSLVDYLRSRGRAVITLAQQLG 106

Query: 190 IALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAKIAS 228
            AL   +G+ YL      H DLA  N+L+     AKV+DFGLAK AS
Sbjct: 107 FALDVCEGMEYLEEKNFVHRDLAARNVLVSEDLVAKVSDFGLAKEAS 153

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256

>gnl|CDD|133191 cd05060, PTKc_Syk_like, Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

 Score = 65.8 bits (161), Expect = 6e-13
 Identities = 42/139 (30%), Positives = 69/139 (49%), Gaps = 28/139 (20%)

Query: 112 FGYVHRGV--LPNGKE---------------GEREFQAEVEIISRVHHKHLVSLVGYYTA 154
           FG V +GV  + +GKE               G++EF  E  +++++ H  +V L+G    
Sbjct: 8   FGSVVKGVYLMKSGKEVEVAVKTLKQEHIAAGKKEFLREASVMAQLDHPCIVRLIG-VCK 66

Query: 155 GSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL------HDDLA-- 206
           G   MLV E      L+ +L  K +  +      ++A   A G+AYL      H DLA  
Sbjct: 67  GEPLMLVMELAPLGPLLKYL--KKRREIPVSDLKELAHQVAMGMAYLESKHFVHRDLAAR 124

Query: 207 NILLDFKFEAKVADFGLAK 225
           N+LL  + +AK++DFG+++
Sbjct: 125 NVLLVNRHQAKISDFGMSR 143

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. Syk is important in B-cell receptor (BCR) signaling, while Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Syk also plays a central role in Fc receptor-mediated phagocytosis in the adaptive immune system. Shark is exclusively expressed in ectodermally derived epithelia, and is localized preferentially to the apical surface of the epithelial cells, it may play a role in a signaling pathway for epithelial cell polarity. Length = 257

>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

 Score = 65.9 bits (161), Expect = 8e-13
 Identities = 37/110 (33%), Positives = 58/110 (52%), Gaps = 8/110 (7%)

Query: 128 REFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTR 187
           ++FQ EV+ + R+ HKHL+SL    + G    ++ E +   +L+  L       +   + 
Sbjct: 47  QDFQKEVQALKRLRHKHLISLFAVCSVGEPVYIITELMEKGSLLAFLRSPEGQVLPVASL 106

Query: 188 IKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAKIASD 229
           I +A   A+G+AYL      H DLA  NIL+      KVADFGLA++  +
Sbjct: 107 IDMACQVAEGMAYLEEQNSIHRDLAARNILVGEDLVCKVADFGLARLIKE 156

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261

>gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

 Score = 65.1 bits (159), Expect = 1e-12
 Identities = 45/143 (31%), Positives = 66/143 (46%), Gaps = 22/143 (15%)

Query: 106 LLRQDG---FGYVHRGV-----------LPNGKEGEREFQAEVEIISRVHHKHLVSLVGY 151
           LLR+ G   FG V  G+           L  G    ++F AE +I+ ++ H  L+ L   
Sbjct: 10  LLRKLGAGQFGEVWEGLWNNTTPVAVKTLKPGTMDPKDFLAEAQIMKKLRHPKLIQLYAV 69

Query: 152 YTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL------HDDL 205
            T      +V E +   +L+ +L G     +  P  I +A   A G+AYL      H DL
Sbjct: 70  CTLEEPIYIVTELMKYGSLLEYLQGGAGRALKLPQLIDMAAQVASGMAYLEAQNYIHRDL 129

Query: 206 A--NILLDFKFEAKVADFGLAKI 226
           A  N+L+      KVADFGLA++
Sbjct: 130 AARNVLVGENNICKVADFGLARV 152

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Frk, also known as Rak, is specifically expressed in liver, lung, kidney, intestine, mammary glands, and the islets of Langerhans. Rodent homologs were previously referred to as GTK (gastrointestinal tyr kinase), BSK (beta-cell Src-like kinase), or IYK (intestinal tyr kinase). Studies in mice reveal that Frk is not essential for viability. It plays a role in the signaling that leads to cytokine-induced beta-cell death in Type I diabetes. It also regulates beta-cell number during embryogenesis and early in life. Length = 261

>gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

 Score = 61.6 bits (150), Expect = 2e-11
 Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 11/119 (9%)

Query: 128 REFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTL-VFHLHGKGQPTMDWPT 186
            +F  E  I+ +  H +++ L G  T     M++ E++ N +L  F     G+ T     
Sbjct: 50  LDFLTEASIMGQFDHPNIIRLEGVVTKSRPVMIITEYMENGSLDKFLRENDGKFT--VGQ 107

Query: 187 RIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAKIASDVNTHVSTR 237
            + +  G A G+ YL      H DLA  NIL++     KV+DFGL++   D     +T+
Sbjct: 108 LVGMLRGIASGMKYLSEMNYVHRDLAARNILVNSNLVCKVSDFGLSRRLEDSEATYTTK 166

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. This allows ephrin/EphR dimers to form, leading to the activation of the intracellular tyr kinase domain. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). The main effect of ephrin/EphR interaction is cell-cell repulsion or adhesion. Ephrin/EphR signaling is important in neural development and plasticity, cell morphogenesis and proliferation, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 61.3 bits (149), Expect = 4e-11
 Identities = 30/111 (27%), Positives = 57/111 (51%), Gaps = 11/111 (9%)

Query: 128 REFQAEVEIISRVHHKHLVSLVGYYTAGSQR--MLVYEFVLNNTLVFHLHGKGQPTMDWP 185
            +F+ E+EI+  + H+++V   G       R   L+ E++ + +L  +L  + +  ++  
Sbjct: 51  SDFEREIEILRTLDHENIVKYKGVCEKPGGRSLRLIMEYLPSGSLRDYLQ-RHRDQINLK 109

Query: 186 TRIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAKIAS 228
             +  +    KG+ YL      H DLA  NIL++ +   K++DFGLAK+  
Sbjct: 110 RLLLFSSQICKGMDYLGSQRYIHRDLAARNILVESEDLVKISDFGLAKVLP 160

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284

>gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

 Score = 60.9 bits (148), Expect = 4e-11
 Identities = 38/137 (27%), Positives = 64/137 (46%), Gaps = 23/137 (16%)

Query: 125 EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFV----LNNTLVFH------L 174
           +  ++F+ E E+++   H+++V   G  T G   ++V+E++    LN  L  H      L
Sbjct: 50  DARKDFEREAELLTNFQHENIVKFYGVCTEGDPPIMVFEYMEHGDLNKFLRSHGPDAAFL 109

Query: 175 HGKGQPT--MDWPTRIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLA 224
                P   +     ++IA+  A G+ YL      H DLA  N L+ +    K+ DFG++
Sbjct: 110 KSPDSPMGELTLSQLLQIAVQIASGMVYLASQHFVHRDLATRNCLVGYDLVVKIGDFGMS 169

Query: 225 KIASDVNTHVSTRVMGT 241
           +   DV T    RV G 
Sbjct: 170 R---DVYTTDYYRVGGH 183

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalytic domain. Trk receptors are mainly expressed in the peripheral and central nervous systems. They play important roles in cell fate determination, neuronal survival and differentiation, as well as in the regulation of synaptic plasticity. Altered expression of Trk receptors is associated with many human diseases. Length = 280

>gnl|CDD|133212 cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

 Score = 59.8 bits (145), Expect = 1e-10
 Identities = 37/116 (31%), Positives = 61/116 (52%), Gaps = 11/116 (9%)

Query: 121 PNGKEGEREFQAEVEIISRVHHKHLVSLVGY-YTAGSQRM-LVYEFVLNNTLVFHLHGKG 178
            +  E  R+F+ E+EI+  + H ++V   G  Y+AG + + LV E++   +L  +L  K 
Sbjct: 43  HSTAEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLRLVMEYLPYGSLRDYLQ-KH 101

Query: 179 QPTMDWPTRIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAKI 226
           +  +D    +  A    KG+ YL      H DLA  NIL++ +   K+ DFGL K+
Sbjct: 102 RERLDHRKLLLYASQICKGMEYLGSKRYVHRDLATRNILVESENRVKIGDFGLTKV 157

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak2 is widely expressed in many tissues while Jak3 is expressed only in hematopoietic cells. Jak2 is essential for the signaling of hormone-like cytokines such as growth hormone, erythropoietin, thrombopoietin, and prolactin, as well as some IFNs and cytokines that signal through the IL-3 and gp130 receptors. Jak3 binds the shared receptor subunit common gamma chain and thus, is essential in the signaling of cytokines that use it such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice results in an embryonic lethal phenotype with multiple defects including erythropoietic and cardiac abnormalities. It is the only Jak gene that results in a lethal phenotype when disrupted in mice. A mutation in the pseudokinase domain of Jak2, V617F, is present in many myeloproliferative diseases, including almost all patients with polycythemia vera, and 50% of patients with essential thrombocytosis and myelofibrosis. Jak3 is important in lymphoid development and myeloid cell differentiation. Inactivating mutations in Jak3 have been reported in humans with severe combined immunodeficiency (SCID). Length = 284

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 59.1 bits (144), Expect = 2e-10
 Identities = 37/126 (29%), Positives = 56/126 (44%), Gaps = 15/126 (11%)

Query: 128 REFQAEVEIISRVHHKHLVSLVGYYTAGSQRML-VY-EFVLNNTLVFHLHGKGQPTMDWP 185
              + E+ I+S + H ++V   G      +  L ++ E+V   +L   L   G+      
Sbjct: 44  EALEREIRILSSLQHPNIVRYYGSERDEEKNTLNIFLEYVSGGSLSSLLKKFGKLP---E 100

Query: 186 TRIKIALGS-AKGLAYLHD------DL--ANILLDFKFEAKVADFGLAKIASDVNTHVST 236
             I+       +GLAYLH       D+  ANIL+D     K+ADFG AK   D+ T   T
Sbjct: 101 PVIRKYTRQILEGLAYLHSNGIVHRDIKGANILVDSDGVVKLADFGCAKRLGDIETGEGT 160

Query: 237 RVM-GT 241
             + GT
Sbjct: 161 GSVRGT 166

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 57.2 bits (139), Expect = 7e-10
 Identities = 44/163 (26%), Positives = 69/163 (42%), Gaps = 26/163 (15%)

Query: 101 FSDANLLRQDGFGYVHRG------------VLP-NGKEGEREFQAEVEIISRVHHKHLVS 147
           F     + + GFG V++             V+    KE + +   E++I+ +  H ++V 
Sbjct: 2   FEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILKKCKHPNIVK 61

Query: 148 LVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRI-KIALGSAKGLAYLHD--- 203
             G Y    +  +V EF    +L   L    Q   +  ++I  +     KGL YLH    
Sbjct: 62  YYGSYLKKDELWIVMEFCSGGSLKDLLKSTNQTLTE--SQIAYVCKELLKGLEYLHSNGI 119

Query: 204 ---DL--ANILLDFKFEAKVADFGLAKIASDVNTHVSTRVMGT 241
              D+  ANILL    E K+ DFGL+   SD  T     ++GT
Sbjct: 120 IHRDIKAANILLTSDGEVKLIDFGLSAQLSD--TKARNTMVGT 160

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

 Score = 56.9 bits (137), Expect = 9e-10
 Identities = 36/107 (33%), Positives = 57/107 (53%), Gaps = 9/107 (8%)

Query: 130 FQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIK 189
           F  E  +++++HHK+LV L+G         +V E +    LV  L  +G+  +     ++
Sbjct: 46  FLEETAVMTKLHHKNLVRLLGVILHNGLY-IVMELMSKGNLVNFLRTRGRALVSVIQLLQ 104

Query: 190 IALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAKIAS 228
            +L  A+G+ YL      H DLA  NIL+     AKV+DFGLA++ S
Sbjct: 105 FSLDVAEGMEYLESKKLVHRDLAARNILVSEDGVAKVSDFGLARVGS 151

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As a negative regulator of Src kinases, Chk may play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Chk is expressed in brain and hematopoietic cells. Studies in mice reveal that Chk is not functionally redundant with Csk and that it plays an important role as a regulator of immune responses. Chk also plays a role in neural differentiation in a manner independent of Src by enhancing Mapk activation via Ras-mediated signaling. Length = 254

>gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

 Score = 56.9 bits (137), Expect = 1e-09
 Identities = 34/108 (31%), Positives = 57/108 (52%), Gaps = 9/108 (8%)

Query: 130 FQAEVEIISRVHHKHLVSLVGYYTAGSQRM-LVYEFVLNNTLVFHLHGKGQPTMDWPTRI 188
           F AE  +++++ H +LV L+G        + +V E++   +LV +L  +G+  +     +
Sbjct: 46  FLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLL 105

Query: 189 KIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAKIAS 228
           K +L   + + YL      H DLA  N+L+     AKV+DFGL K AS
Sbjct: 106 KFSLDVCEAMEYLEANNFVHRDLAARNVLVSEDNVAKVSDFGLTKEAS 153

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Csk is expressed in a wide variety of tissues. As a negative regulator of Src, Csk plays a role in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, Csk also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. Length = 256

>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein Tyrosine Kinases

 Score = 56.2 bits (136), Expect = 2e-09
 Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 8/108 (7%)

Query: 130 FQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIK 189
           F  E +I+ ++ H  LV L    +      +V E++   +L+  L       +  P  + 
Sbjct: 48  FLQEAQIMKKLRHDKLVQLYAVCSEEEPIYIVTEYMSKGSLLDFLKSGEGKKLRLPQLVD 107

Query: 190 IALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAKIASD 229
           +A   A+G+AYL      H DLA  NIL+      K+ADFGLA++  D
Sbjct: 108 MAAQIAEGMAYLESRNYIHRDLAARNILVGENLVCKIADFGLARLIED 155

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, and Lyn show a limited expression pattern. Length = 261

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 56.3 bits (134), Expect = 3e-09
 Identities = 36/153 (23%), Positives = 58/153 (37%), Gaps = 24/153 (15%)

Query: 111 GFGYVHRGV-------------LPNGKEGEREFQAEVEIISRV-HHKHLVSLVGYYTAGS 156
            FG V+                L +  +    F  E++I++ + H  ++V L  ++    
Sbjct: 12  SFGEVYLARDRKLVALKVLAKKLESKSKEVERFLREIQILASLNHPPNIVKLYDFFQDEG 71

Query: 157 QRMLVYEFVLNNTLVFHL-HGKGQPTMDWPTRIKIALGSAKGLAYLHD------DL--AN 207
              LV E+V   +L   L     +  +     + I       L YLH       D+   N
Sbjct: 72  SLYLVMEYVDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLHSKGIIHRDIKPEN 131

Query: 208 ILLDFK-FEAKVADFGLAKIASDVNTHVSTRVM 239
           ILLD      K+ DFGLAK+  D  +  S   +
Sbjct: 132 ILLDRDGRVVKLIDFGLAKLLPDPGSTSSIPAL 164

Length = 384

>gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

 Score = 54.7 bits (132), Expect = 7e-09
 Identities = 40/146 (27%), Positives = 66/146 (45%), Gaps = 38/146 (26%)

Query: 112 FGYVHRGV-LPNGK-----------------EGEREFQAEVEIISRVHHKHLVSLVGYYT 153
           FG V++GV +P G+                 +  +E   E  +++ V H H+V L+G   
Sbjct: 20  FGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILDEAYVMASVDHPHVVRLLGI-C 78

Query: 154 AGSQRMLVYEFVLNNTLVFHLHG-----KGQPTMDWPTRIKIALGSAKGLAYL------H 202
             SQ  L+ + +    L+ ++         Q  ++W  +I      AKG++YL      H
Sbjct: 79  LSSQVQLITQLMPLGCLLDYVRNHKDNIGSQYLLNWCVQI------AKGMSYLEEKRLVH 132

Query: 203 DDLA--NILLDFKFEAKVADFGLAKI 226
            DLA  N+L+      K+ DFGLAK+
Sbjct: 133 RDLAARNVLVKTPQHVKITDFGLAKL 158

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, resulting in the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Collectively, they can recognize a variety of ligands including EGF, TGFalpha, and neuregulins, among others. All four subfamily members can form homo- or heterodimers. HER3 contains an impaired kinase domain and depends on its heterodimerization partner for activation. EGFR subfamily members are involved in signaling pathways leading to a broad range of cellular responses including cell proliferation, differentiation, migration, growth inhibition, and apoptosis. Gain of function alterations, through their overexpression, deletions, or point mutations in their kinase domains, have been implicated in various cancers. These receptors are targets of many small molecule inhibitors and monoclonal antibodies used in cancer therapy. Length = 279

>gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

 Score = 53.7 bits (129), Expect = 1e-08
 Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 8/109 (7%)

Query: 129 EFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRI 188
           EF  E  ++  + H +LV L+G  T      ++ EF+    L+ +L    +  ++    +
Sbjct: 48  EFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLL 107

Query: 189 KIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAKIASD 229
            +A   +  + YL      H DLA  N L+      KVADFGL+++ + 
Sbjct: 108 YMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTG 156

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays a role in cell proliferation and survival. In response to DNA damage or oxidative stress, Abl is transported to the nucleus where it induces apoptosis. In chronic myelogenous leukemia (CML) patients, an aberrant translocation results in the replacement of the first exon of Abl with the BCR (breakpoint cluster region) gene. The resulting BCR-Abl fusion protein is constitutively active and associates into tetramers, resulting in a hyperactive kinase sending a continuous signal. This leads to uncontrolled proliferation, morphological transformation and anti-apoptotic effects. BCR-Abl is the target of selective inhibitors, such as imatinib (Gleevec), used in the treatment of CML. Abl2, also known as ARG (Abelson-related gene), is thought to play a cooperative role with Abl in the proper development of the nervous system. The Tel-ARG fusion protein, resulting from reciprocal translocation between chromosomes 1 and 12, is associated with acute myeloid leukemia (AML). The TEL gene is a frequent fusion partner of other tyr kinase oncogenes, including Tel/Abl, Tel/PDGFRbeta, and Tel/Jak2, found in patients with leukemia and myeloproliferative disorders. Length = 263

>gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

 Score = 52.6 bits (126), Expect = 3e-08
 Identities = 39/137 (28%), Positives = 60/137 (43%), Gaps = 20/137 (14%)

Query: 112 FGYVHRG-----------VLPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRML 160
           FG V  G            +  G   E +F  E +++ ++ H  LV L G  T  S   L
Sbjct: 17  FGLVWLGYWLEKRKVAIKTIREGAMSEEDFIEEAQVMMKLSHPKLVQLYGVCTERSPICL 76

Query: 161 VYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL------HDDLA--NILLDF 212
           V+EF+ +  L  +L  + +      T + + L   +G+AYL      H DLA  N L+  
Sbjct: 77  VFEFMEHGCLSDYLRAQ-RGKFSQETLLGMCLDVCEGMAYLESSNVIHRDLAARNCLVGE 135

Query: 213 KFEAKVADFGLAKIASD 229
               KV+DFG+ +   D
Sbjct: 136 NQVVKVSDFGMTRFVLD 152

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Itk contains the Tec homology (TH) domain containing one proline-rich region and a zinc-binding region. Tec kinases are expressed mainly by haematopoietic cells. Itk is expressed in T-cells and mast cells, and is important in their development and differentiation. Of the three Tec kinases expressed in T-cells, Itk plays the predominant role in T-cell receptor (TCR) signaling. It is activated by phosphorylation upon TCR crosslinking and is involved in the pathway resulting in phospholipase C-gamma1 activation and actin polymerization. It also plays a role in the downstream signaling of the T-cell costimulatory receptor CD28, the T-cell surface receptor CD2, and the chemokine receptor CXCR4. In addition, Itk is crucial for the development of T-helper(Th)2 effector responses. Length = 256

>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

 Score = 51.8 bits (125), Expect = 6e-08
 Identities = 31/123 (25%), Positives = 55/123 (44%), Gaps = 28/123 (22%)

Query: 133 EVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVL--------NNTLVFHLHGKGQPTMDW 184
           E++++  + H +++ L+  +   S   LV+EF+         + ++V             
Sbjct: 52  EIKLLQELKHPNIIGLLDVFGHKSNINLVFEFMETDLEKVIKDKSIVLT----------- 100

Query: 185 PTRIK-IALGSAKGLAYLHD------DL--ANILLDFKFEAKVADFGLAKIASDVNTHVS 235
           P  IK   L + +GL YLH       DL   N+L+      K+ADFGLA+     N  ++
Sbjct: 101 PADIKSYMLMTLRGLEYLHSNWILHRDLKPNNLLIASDGVLKLADFGLARSFGSPNRKMT 160

Query: 236 TRV 238
            +V
Sbjct: 161 HQV 163

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is also a component of the general transcription factor TFIIH, which phosphorylates the C-terminal domain (CTD) of RNA polymerase II when it is bound with unphosphorylated DNA, as present in the pre-initiation complex. Following phosphorylation, the CTD dissociates from the DNA which allows transcription initiation. Length = 298

>gnl|CDD|173639 cd05066, PTKc_EphR_A, Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

 Score = 50.7 bits (121), Expect = 1e-07
 Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 11/111 (9%)

Query: 128 REFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTL-VFHLHGKGQPTMDWPT 186
           R+F +E  I+ +  H +++ L G  T     M+V E++ N +L  F     GQ T+    
Sbjct: 50  RDFLSEASIMGQFDHPNIIHLEGVVTKSKPVMIVTEYMENGSLDAFLRKHDGQFTV--IQ 107

Query: 187 RIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAKIASD 229
            + +  G A G+ YL      H DLA  NIL++     KV+DFGL+++  D
Sbjct: 108 LVGMLRGIASGMKYLSDMGYVHRDLAARNILVNSNLVCKVSDFGLSRVLED 158

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. EphARs and ephrin-A ligands are expressed in multiple areas of the developing brain, especially in the retina and tectum. They are part of a system controlling retinotectal mapping. Length = 267

>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases

 Score = 50.2 bits (121), Expect = 2e-07
 Identities = 40/121 (33%), Positives = 56/121 (46%), Gaps = 17/121 (14%)

Query: 132 AEVEIISRVHHKHLVSLVGYYTAGSQRML--VYEFVLNNTLVFHLHGKGQPTMDWPTRIK 189
            E  I+SR++H  +V L  +Y   ++  L  V E+     L  HL  +G+ + +   R  
Sbjct: 42  TERNILSRINHPFIVKL--HYAFQTEEKLYLVLEYAPGGELFSHLSKEGRFSEER-ARFY 98

Query: 190 IA-LGSAKGLAYLHD------DL--ANILLDFKFEAKVADFGLAKIASDVNTHVSTRVMG 240
            A +  A  L YLH       DL   NILLD     K+ DFGLAK  S   +  +T   G
Sbjct: 99  AAEIVLA--LEYLHSLGIIYRDLKPENILLDADGHIKLTDFGLAKELSSEGSRTNTFC-G 155

Query: 241 T 241
           T
Sbjct: 156 T 156

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250

>gnl|CDD|173640 cd05067, PTKc_Lck_Blk, Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

 Score = 49.5 bits (118), Expect = 3e-07
 Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 12/117 (10%)

Query: 124 KEGERE---FQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQP 180
           K+G      F AE  ++ ++ H  LV L    T      ++ E++ N +LV  L      
Sbjct: 39  KQGSMSPEAFLAEANLMKQLQHPRLVRLYAVVTQ-EPIYIITEYMENGSLVDFLKTPEGI 97

Query: 181 TMDWPTRIKIALGSAKGLAYL------HDDL--ANILLDFKFEAKVADFGLAKIASD 229
            +     I +A   A+G+A++      H DL  ANIL+      K+ADFGLA++  D
Sbjct: 98  KLTINKLIDMAAQIAEGMAFIERKNYIHRDLRAANILVSETLCCKIADFGLARLIED 154

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lck is expressed in T-cells and natural killer (NK) cells. It plays a critical role in T-cell maturation, activation, and T-cell receptor (TCR) signaling. Lck phosphorylates ITAM (immunoreceptor tyr activation motif) sequences on several subunits of TCRs, leading to the activation of different second messenger cascades. Phosphorylated ITAMs serve as binding sites for other signaling factor such as Syk and ZAP-70, leading to their activation and propagation of downstream events. In addition, Lck regulates drug-induced apoptosis by interfering with the mitochondrial death pathway. The apototic role of Lck is independent of its primary function in T-cell signaling. Blk is expressed specifically in B-cells. It is involved in pre-BCR (B-cell receptor) signaling. Length = 260

>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein Tyrosine Kinases

 Score = 49.4 bits (118), Expect = 3e-07
 Identities = 42/151 (27%), Positives = 68/151 (45%), Gaps = 25/151 (16%)

Query: 102 SDANLLRQDG---FGYVHRG-----------VLPNGKEGEREFQAEVEIISRVHHKHLVS 147
           S+   L++ G   FG VH G           ++  G   E +F  E +++ ++ H +LV 
Sbjct: 4   SELTFLKELGSGQFGVVHLGKWRGKIDVAIKMIREGAMSEDDFIEEAKVMMKLSHPNLVQ 63

Query: 148 LVGYYTAGSQRMLVYEFVLNNTLVFHLHG-KGQPTMDWPTRIKIALGSAKGLAYL----- 201
           L G  T      +V E++ N  L+ +L   KG+   +W   + +     + + YL     
Sbjct: 64  LYGVCTKQRPIFIVTEYMANGCLLNYLRERKGKLGTEW--LLDMCSDVCEAMEYLESNGF 121

Query: 202 -HDDLA--NILLDFKFEAKVADFGLAKIASD 229
            H DLA  N L+      KV+DFGLA+   D
Sbjct: 122 IHRDLAARNCLVGEDNVVKVSDFGLARYVLD 152

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases form the second largest subfamily of nRTKs and are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. Mutations in Btk cause the severe B-cell immunodeficiency, X-linked agammaglobulinaemia (XLA). Length = 256

>gnl|CDD|173648 cd05092, PTKc_TrkA, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

 Score = 49.6 bits (118), Expect = 3e-07
 Identities = 45/159 (28%), Positives = 67/159 (42%), Gaps = 23/159 (14%)

Query: 104 ANLLRQDGFGYVHRGVLPNGKEGER-EFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVY 162
            NLL +     V    L    E  R +FQ E E+++ + H+H+V   G  T G   ++V+
Sbjct: 27  HNLLPEQDKMLVAVKALKEASESARQDFQREAELLTVLQHQHIVRFYGVCTEGRPLLMVF 86

Query: 163 EFV----LNNTLVFH-------LHGKGQP--TMDWPTRIKIALGSAKGLAYL------HD 203
           E++    LN  L  H         G+      +     + IA   A G+ YL      H 
Sbjct: 87  EYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIASGMVYLASLHFVHR 146

Query: 204 DLA--NILLDFKFEAKVADFGLAK-IASDVNTHVSTRVM 239
           DLA  N L+      K+ DFG+++ I S     V  R M
Sbjct: 147 DLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTM 185

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory and sympathetic neurons of the peripheral nervous system, and in basal forebrain cholinergic neurons of the central nervous system. It is critical for neuronal growth, differentiation and survival. Alternative TrkA splicing has been implicated as a pivotal regulator of neuroblastoma (NB) behavior. Normal TrkA expression is associated with better NB prognosis, while the hypoxia-regulated TrkAIII splice variant promotes NB pathogenesis and progression. Aberrant TrkA expression has also been demonstrated in non-neural tumors including prostate, breast, lung, and pancreatic cancers. Length = 280

>gnl|CDD|133202 cd05071, PTKc_Src, Catalytic domain of the Protein Tyrosine Kinase, Src

 Score = 49.3 bits (117), Expect = 5e-07
 Identities = 43/144 (29%), Positives = 64/144 (44%), Gaps = 24/144 (16%)

Query: 107 LRQDGFGYVHRGV-----------LPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAG 155
           L Q  FG V  G            L  G      F  E +++ ++ H+ LV L   Y   
Sbjct: 14  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQL---YAVV 70

Query: 156 SQR--MLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL------HDDL-- 205
           S+    +V E++   +L+  L G+    +  P  + +A   A G+AY+      H DL  
Sbjct: 71  SEEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRA 130

Query: 206 ANILLDFKFEAKVADFGLAKIASD 229
           ANIL+      KVADFGLA++  D
Sbjct: 131 ANILVGENLVCKVADFGLARLIED 154

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Src also play a role in regulating cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Elevated levels of Src kinase activity have been reported in a variety of human cancers. Several inhibitors of Src have been developed as anti-cancer drugs. Src is also implicated in acute inflammatory responses and osteoclast function. Length = 262

>gnl|CDD|132938 cd06607, STKc_TAO, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

 Score = 49.0 bits (117), Expect = 5e-07
 Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 15/127 (11%)

Query: 122 NGKEGEREFQ---AEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTL-VFHLHGK 177
           +GK+   ++Q    EV  + ++ H + +   G Y       LV E+ L +   +  +H K
Sbjct: 51  SGKQSNEKWQDIIKEVRFLQQLRHPNTIEYKGCYLREHTAWLVMEYCLGSASDILEVHKK 110

Query: 178 GQPTMDWPTRIKIALGSAKGLAYLHD------DL--ANILLDFKFEAKVADFGLAKIASD 229
               ++      I  G+ +GLAYLH       D+   NILL      K+ADFG A + S 
Sbjct: 111 PLQEVEIAA---ICHGALQGLAYLHSHERIHRDIKAGNILLTEPGTVKLADFGSASLVSP 167

Query: 230 VNTHVST 236
            N+ V T
Sbjct: 168 ANSFVGT 174

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily members, named TAO1, TAO2, and TAO3. Length = 307

>gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

 Score = 49.0 bits (117), Expect = 5e-07
 Identities = 41/175 (23%), Positives = 73/175 (41%), Gaps = 44/175 (25%)

Query: 107 LRQDGFGYVHRG--VLPNGKEG-----------------EREFQAEVEIISRVHHKHLVS 147
           L +  FG V++G    PN +                   ++EF+ E E++S + H ++V 
Sbjct: 13  LGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAELMSDLQHPNIVC 72

Query: 148 LVGYYTAGSQRMLVYEFVLNNTLVFHL--------------HGKGQPTMDWPTRIKIALG 193
           L+G  T      +++E++ +  L   L                  + ++D    + IA+ 
Sbjct: 73  LLGVCTKEQPTCMLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQ 132

Query: 194 SAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAKIASDVNTHVSTRVMG 240
            A G+ YL      H DLA  N L+      K++DFGL++   D+ +    RV  
Sbjct: 133 IAAGMEYLSSHHFVHRDLAARNCLVGEGLTVKISDFGLSR---DIYSADYYRVQS 184

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. They play important roles in bone and heart formation. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Drosophila Ror is expressed only in the developing nervous system during neurite outgrowth and neuronal differentiation, suggesting a role for Drosophila Ror in neural development. More recently, mouse Ror1 and Ror2 have also been found to play an important role in regulating neurite growth in central neurons. Ror1 and Ror2 are believed to have some overlapping and redundant functions. Length = 283

>gnl|CDD|133172 cd05040, PTKc_Ack_like, Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

 Score = 48.9 bits (117), Expect = 6e-07
 Identities = 31/105 (29%), Positives = 45/105 (42%), Gaps = 9/105 (8%)

Query: 129 EFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRI 188
           +F  E  I+  + H++L+ L G        M+V E     +L+  L           T  
Sbjct: 42  DFLKEAAIMHSLDHENLIRLYGVVLTHPL-MMVTELAPLGSLLDRLRKDALGHFLISTLC 100

Query: 189 KIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAK 225
             A+  A G+ YL      H DLA  NILL    + K+ DFGL +
Sbjct: 101 DYAVQIANGMRYLESKRFIHRDLAARNILLASDDKVKIGDFGLMR 145

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with androgen-independent prostate cancer progression. Tnk1 regulates TNFalpha signaling and may play an important role in cell death. Length = 257

>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein Tyrosine Kinases

 Score = 48.6 bits (116), Expect = 6e-07
 Identities = 36/143 (25%), Positives = 63/143 (44%), Gaps = 26/143 (18%)

Query: 106 LLRQDGFGYVHRGVLPNG-------------KEGEREFQAEVEIISRVHHKHLVSLVGYY 152
            + +  FG V++GVL                 + +R+F  E EI+ +  H ++V L+G  
Sbjct: 2   KIGKGNFGDVYKGVLKGNTEVAVKTCRSTLPPDLKRKFLQEAEILKQYDHPNIVKLIGVC 61

Query: 153 TAGSQRMLVYEFVLNNTLVFHLHGKGQ--PTMDWPTRIKIALGSAKGLAYL------HDD 204
                  +V E V   +L+  L  K            ++++L +A G+ YL      H D
Sbjct: 62  VQKQPIYIVMELVPGGSLLTFLRKKKNRLTVK---KLLQMSLDAAAGMEYLESKNCIHRD 118

Query: 205 LA--NILLDFKFEAKVADFGLAK 225
           LA  N L+      K++DFG+++
Sbjct: 119 LAARNCLVGENNVLKISDFGMSR 141

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes and Fer kinases play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Fes and Fer show redundancy in their biological functions. Length = 251

>gnl|CDD|173638 cd05065, PTKc_EphR_B, Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

 Score = 48.7 bits (116), Expect = 6e-07
 Identities = 44/144 (30%), Positives = 64/144 (44%), Gaps = 28/144 (19%)

Query: 112 FGYVHRGVL--PNGKE---------------GEREFQAEVEIISRVHHKHLVSLVGYYTA 154
           FG V RG L  P  +E                 R+F +E  I+ +  H +++ L G  T 
Sbjct: 17  FGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTK 76

Query: 155 GSQRMLVYEFVLNNTL-VFHLHGKGQPTMDWPTRIKIALGSAKGLAYL------HDDLA- 206
               M++ EF+ N  L  F     GQ T+     + +  G A G+ YL      H DLA 
Sbjct: 77  SRPVMIITEFMENGALDSFLRQNDGQFTV--IQLVGMLRGIAAGMKYLSEMNYVHRDLAA 134

Query: 207 -NILLDFKFEAKVADFGLAKIASD 229
            NIL++     KV+DFGL++   D
Sbjct: 135 RNILVNSNLVCKVSDFGLSRFLED 158

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion. EphBRs play important roles in synapse formation and plasticity, spine morphogenesis, axon guidance, and angiogenesis. In the intestinal epithelium, EphBRs are Wnt signaling target genes that control cell compartmentalization. They function as suppressors of color cancer progression. Length = 269

>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

 Score = 48.8 bits (117), Expect = 7e-07
 Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 15/118 (12%)

Query: 133 EVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIAL 192
           E++ +    H ++V L+  +  GS  +LV E++ +  L   L  + +P  +   +     
Sbjct: 49  EIKALQACQHPYVVKLLDVFPHGSGFVLVMEYMPS-DLSEVLRDEERPLPEAQVK-SYMR 106

Query: 193 GSAKGLAYLHD------DL--ANILLDFKFEAKVADFGLAKIASD----VNTH-VSTR 237
              KG+AY+H       DL  AN+L+      K+ADFGLA++ S+    + +H V+TR
Sbjct: 107 MLLKGVAYMHANGIMHRDLKPANLLISADGVLKIADFGLARLFSEEEPRLYSHQVATR 164

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of heart failure. Length = 286

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 48.3 bits (116), Expect = 7e-07
 Identities = 35/139 (25%), Positives = 58/139 (41%), Gaps = 24/139 (17%)

Query: 120 LPNGKEGEREF-QAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLH--- 175
           L N  E ERE    EV+I+ +++H +++     +    +  +V E+     L   +    
Sbjct: 35  LSNMSEKEREDALNEVKILKKLNHPNIIKYYESFEEKGKLCIVMEYADGGDLSQKIKKQK 94

Query: 176 GKGQPT-----MDWPTRIKIALGSAKGLAYLHD------DL--ANILLDFKFEAKVADFG 222
            +G+P      +DW  ++         L YLH       D+   NI L      K+ DFG
Sbjct: 95  KEGKPFPEEQILDWFVQL------CLALKYLHSRKILHRDIKPQNIFLTSNGLVKLGDFG 148

Query: 223 LAKIASDVNTHVSTRVMGT 241
           ++K+ S       T V GT
Sbjct: 149 ISKVLSSTVDLAKTVV-GT 166

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|133186 cd05055, PTKc_PDGFR, Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

 Score = 48.6 bits (116), Expect = 8e-07
 Identities = 38/122 (31%), Positives = 64/122 (52%), Gaps = 11/122 (9%)

Query: 121 PNGKEGERE-FQAEVEIISRV-HHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKG 178
           P     ERE   +E++I+S + +H+++V+L+G  T G   +++ E+     L+  L  K 
Sbjct: 75  PTAHSSEREALMSELKIMSHLGNHENIVNLLGACTIGGPILVITEYCCYGDLLNFLRRKR 134

Query: 179 QPTMDWPTRIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAK-IASD 229
           +  +     +  +   AKG+A+L      H DLA  N+LL      K+ DFGLA+ I +D
Sbjct: 135 ESFLTLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNVLLTHGKIVKICDFGLARDIMND 194

Query: 230 VN 231
            N
Sbjct: 195 SN 196

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR subfamily receptors are important in the development of a variety of cells. PDGFRs are expressed in a many cells including fibroblasts, neurons, endometrial cells, mammary epithelial cells, and vascular smooth muscle cells. PDGFR signaling is critical in normal embryonic development, angiogenesis, and wound healing. PDGFRs transduce mitogenic signals for connective tissue cells and are important for cell shape and motility. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem cells, the interstitial cells of Cajal, and the pacemaker cells of the GI tract. CSF-1R signaling is critical in the regulation of macrophages and osteoclasts. Mammalian FLT3 plays an important role in the survival, proliferation, and differentiation of stem cells. Length = 302

>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

 Score = 48.3 bits (116), Expect = 1e-06
 Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 15/118 (12%)

Query: 133 EVEIISRVHHKHLVSLVGYYT--AGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIK- 189
           E++++ ++ H ++V L    T        +V+E++ ++        + + T     +IK 
Sbjct: 48  EIKLLQKLRHPNIVRLKEIVTSKGKGSIYMVFEYMDHDLTGLLDSPEVKFTES---QIKC 104

Query: 190 IALGSAKGLAYLHD------DL--ANILLDFKFEAKVADFGLAKIASDVNTHVST-RV 238
                 +GL YLH       D+  +NIL++     K+ADFGLA+  +  N+   T RV
Sbjct: 105 YMKQLLEGLQYLHSNGILHRDIKGSNILINNDGVLKLADFGLARPYTKRNSADYTNRV 162

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 48.0 bits (115), Expect = 1e-06
 Identities = 39/164 (23%), Positives = 70/164 (42%), Gaps = 34/164 (20%)

Query: 105 NLLRQDGFGYVHRGVLPNGKEGE-----------------REFQAEVEIISRVHHKHLVS 147
           +L+ +  FG V++G+  N + G+                 +    E++++  + H ++V 
Sbjct: 6   DLIGRGAFGVVYKGL--NLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPNIVK 63

Query: 148 LVGYYTAGSQRMLVYEFVLNNTL--VFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD-- 203
            +G         ++ E+  N +L  +    G   P       +   L   +GLAYLH+  
Sbjct: 64  YIGSIETSDSLYIILEYAENGSLRQIIKKFGP-FPESLVAVYVYQVL---QGLAYLHEQG 119

Query: 204 ----DL--ANILLDFKFEAKVADFGLAKIASDVNTHVSTRVMGT 241
               D+  ANIL       K+ADFG+A   +DV +     V+GT
Sbjct: 120 VIHRDIKAANILTTKDGVVKLADFGVATKLNDV-SKDDASVVGT 162

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|133194 cd05063, PTKc_EphR_A2, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

 Score = 47.7 bits (113), Expect = 2e-06
 Identities = 41/143 (28%), Positives = 65/143 (45%), Gaps = 26/143 (18%)

Query: 112 FGYVHRGVL----------------PNGKEGER-EFQAEVEIISRVHHKHLVSLVGYYTA 154
           FG V RG+L                P   E +R +F +E  I+ +  H +++ L G  T 
Sbjct: 18  FGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFLSEASIMGQFSHHNIIRLEGVVTK 77

Query: 155 GSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL------HDDLA-- 206
               M++ E++ N  L  +L         +   + +  G A G+ YL      H DLA  
Sbjct: 78  FKPAMIITEYMENGALDKYLRDHDGEFSSYQL-VGMLRGIAAGMKYLSDMNYVHRDLAAR 136

Query: 207 NILLDFKFEAKVADFGLAKIASD 229
           NIL++   E KV+DFGL+++  D
Sbjct: 137 NILVNSNLECKVSDFGLSRVLED 159

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. The EphA2 receptor is overexpressed in tumor cells and tumor blood vessels in a variety of cancers including breast, prostate, lung, and colon. As a result, it is an attractive target for drug design since its inhibition could affect several aspects of tumor progression. Length = 268

>gnl|CDD|173625 cd05032, PTKc_InsR_like, Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 40/162 (24%), Positives = 62/162 (38%), Gaps = 38/162 (23%)

Query: 107 LRQDGFGYVHRGVLPNGKEGE-------------------REFQAEVEIISRVHHKHLVS 147
           L Q  FG V+ G+     +GE                    EF  E  ++   +  H+V 
Sbjct: 14  LGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEASVMKEFNCHHVVR 73

Query: 148 LVGYYTAGSQRMLVYEFVLNNTLVFHLHGK-----GQPTMDWPTRIKI---ALGSAKGLA 199
           L+G  + G   ++V E +    L  +L  +       P +  PT  K    A   A G+A
Sbjct: 74  LLGVVSTGQPTLVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMA 133

Query: 200 YL------HDDLA--NILLDFKFEAKVADFGLAKIASDVNTH 233
           YL      H DLA  N ++      K+ DFG+ +   D+   
Sbjct: 134 YLAAKKFVHRDLAARNCMVAEDLTVKIGDFGMTR---DIYET 172

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR and IGF-1R, which share 84% sequence identity in their kinase domains, display physiologically distinct yet overlapping functions in cell growth, differentiation, and metabolism. InsR activation leads primarily to metabolic effects while IGF-1R activation stimulates mitogenic pathways. In cells expressing both receptors, InsR/IGF-1R hybrids are found together with classical receptors. Both receptors can interact with common adaptor molecules such as IRS-1 and IRS-2. Length = 277

>gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

 Score = 46.8 bits (111), Expect = 3e-06
 Identities = 39/119 (32%), Positives = 60/119 (50%), Gaps = 16/119 (13%)

Query: 124 KEG---EREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHL--HGKG 178
           KEG   E EF  E +++ ++ H+ LV L G  T      +V E++ N  L+ +L  HGK 
Sbjct: 37  KEGSMSEDEFIEEAKVMMKLSHEKLVQLYGVCTKQRPIYIVTEYMSNGCLLNYLREHGKR 96

Query: 179 QPTMDWPTRIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAKIASD 229
                    +++     +G+AYL      H DLA  N L+D +   KV+DFGL++   D
Sbjct: 97  FQPSQL---LEMCKDVCEGMAYLESKQFIHRDLAARNCLVDDQGCVKVSDFGLSRYVLD 152

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Btk contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Btk is expressed in B-cells, and a variety of myeloid cells including mast cells, platelets, neutrophils, and dendrictic cells. It interacts with a variety of partners, from cytosolic proteins to nuclear transcription factors, suggesting a diversity of functions. Stimulation of a diverse array of cell surface receptors, including antigen engagement of the B-cell receptor (BCR), leads to PH-mediated membrane translocation of Btk and subsequent phosphorylation by Src kinase and activation. Btk plays an important role in the life cycle of B-cells including their development, differentiation, proliferation, survival, and apoptosis. Mutations in Btk cause the primary immunodeficiency disease, X-linked agammaglobulinaemia (XLA) in humans. Bmx is primarily expressed in bone marrow and the arterial endothelium, and plays an important role in ischemia-induced angiogenesis. It facilitates arterial growth, capillary formation, vessel maturation, and bone marrow-derived endothelial progenitor cell mobilization. Length = 256

>gnl|CDD|133201 cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

 Score = 46.5 bits (110), Expect = 3e-06
 Identities = 36/120 (30%), Positives = 55/120 (45%), Gaps = 13/120 (10%)

Query: 120 LPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQR--MLVYEFVLNNTLVFHLHGK 177
           L  G      F  E +I+ ++ H  LV L   Y   S+    +V E++   +L+  L   
Sbjct: 38  LKPGTMSPESFLEEAQIMKKLRHDKLVQL---YAVVSEEPIYIVTEYMSKGSLLDFLKDG 94

Query: 178 GQPTMDWPTRIKIALGSAKGLAYL------HDDL--ANILLDFKFEAKVADFGLAKIASD 229
               +  P  + +A   A G+AY+      H DL  ANIL+      K+ADFGLA++  D
Sbjct: 95  EGRALKLPNLVDMAAQVAAGMAYIERMNYIHRDLRSANILVGDGLVCKIADFGLARLIED 154

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Fyn, together with Lck, plays a critical role in T-cell signal transduction by phosphorylating ITAM (immunoreceptor tyr activation motif) sequences on T-cell receptors, ultimately leading to the proliferation and differentiation of T-cells. In addition, Fyn is involved in the myelination of neurons, and is implicated in Alzheimer's and Parkinson's diseases. Yrk has been detected only in chickens. It is primarily found in neuronal and epithelial cells and in macrophages. It may play a role in inflammation and in response to injury. Length = 260

>gnl|CDD|133219 cd05088, PTKc_Tie2, Catalytic domain of the Protein Tyrosine Kinase, Tie2

 Score = 46.9 bits (111), Expect = 3e-06
 Identities = 34/125 (27%), Positives = 57/125 (45%), Gaps = 23/125 (18%)

Query: 124 KEGEREFQAEVEIISRV-HHKHLVSLVGYYTAGSQRMLVYEF--------------VLNN 168
           K+  R+F  E+E++ ++ HH ++++L+G         L  E+              VL  
Sbjct: 48  KDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLET 107

Query: 169 TLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVAD 220
              F +      T+     +  A   A+G+ YL      H DLA  NIL+   + AK+AD
Sbjct: 108 DPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIAD 167

Query: 221 FGLAK 225
           FGL++
Sbjct: 168 FGLSR 172

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. Tie2 signaling plays key regulatory roles in vascular integrity and quiescence, and in inflammation. Length = 303

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score = 46.3 bits (110), Expect = 4e-06
 Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 16/114 (14%)

Query: 123 GKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKG---Q 179
           G+E  ++ + E+ ++S++ H ++V  +G         +  E V   +L   L   G   +
Sbjct: 42  GQEAVKQLEQEIALLSKLQHPNIVQYLGTEREEDNLYIFLELVPGGSLAKLLKKYGSFPE 101

Query: 180 PTMDWPTRIKIALGSAKGLAYLHD------DL--ANILLDFKFEAKVADFGLAK 225
           P +   TR +I L    GL YLHD      D+  ANIL+D     K+ADFG+AK
Sbjct: 102 PVIRLYTR-QILL----GLEYLHDRNTVHRDIKGANILVDTNGVVKLADFGMAK 150

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|132966 cd06635, STKc_TAO1, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

 Score = 46.2 bits (109), Expect = 5e-06
 Identities = 39/127 (30%), Positives = 60/127 (47%), Gaps = 15/127 (11%)

Query: 122 NGKEGEREFQ---AEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNN-TLVFHLHGK 177
           +GK+   ++Q    EV+ + R+ H + +   G Y       LV E+ L + + +  +H K
Sbjct: 61  SGKQSNEKWQDIIKEVKFLQRIKHPNSIEYKGCYLREHTAWLVMEYCLGSASDLLEVHKK 120

Query: 178 GQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD 229
               ++      I  G+ +GLAYLH            NILL    + K+ADFG A IAS 
Sbjct: 121 PLQEVEIAA---ITHGALQGLAYLHSHNMIHRDIKAGNILLTEPGQVKLADFGSASIASP 177

Query: 230 VNTHVST 236
            N+ V T
Sbjct: 178 ANSFVGT 184

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuronal apoptosis. TAO1 interacts with the checkpoint proteins BubR1 and Mad2, and plays an important role in regulating mitotic progression, which is required for both chromosome congression and checkpoint-induced anaphase delay. TAO1 may play a role in protecting genomic stability. Length = 317

>gnl|CDD|173641 cd05072, PTKc_Lyn, Catalytic domain of the Protein Tyrosine Kinase, Lyn

 Score = 46.2 bits (109), Expect = 5e-06
 Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 8/118 (6%)

Query: 120 LPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQ 179
           L  G    + F  E  ++  + H  LV L    T      ++ E++   +L+  L     
Sbjct: 38  LKPGTMSVQAFLEEANLMKTLQHDKLVRLYAVVTKEEPIYIITEYMAKGSLLDFLKSDEG 97

Query: 180 PTMDWPTRIKIALGSAKGLAYL------HDDL--ANILLDFKFEAKVADFGLAKIASD 229
             +  P  I  +   A+G+AY+      H DL  AN+L+      K+ADFGLA++  D
Sbjct: 98  GKVLLPKLIDFSAQIAEGMAYIERKNYIHRDLRAANVLVSESLMCKIADFGLARVIED 155

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lyn is expressed in B lymphocytes and myeloid cells. It exhibits both positive and negative regulatory roles in B cell receptor (BCR) signaling. Lyn, as well as Fyn and Blk, promotes B cell activation by phosphorylating ITAMs (immunoreceptor tyr activation motifs) in CD19 and in Ig components of BCR. It negatively regulates signaling by its unique ability to phosphorylate ITIMs (immunoreceptor tyr inhibition motifs) in cell surface receptors like CD22 and CD5. Lyn also plays an important role in G-CSF receptor signaling by phosphorylating a variety of adaptor molecules. Length = 261

>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

 Score = 45.7 bits (109), Expect = 7e-06
 Identities = 41/169 (24%), Positives = 69/169 (40%), Gaps = 49/169 (28%)

Query: 106 LLRQDGFGYVHRGV-LPNGK----------EGEREFQAEVEIISRVHHKHLVSLVGYYTA 154
            L +  +G V++ +    G+          E  +E   E+ I+ +    ++V   G Y  
Sbjct: 10  KLGEGSYGSVYKAIHKETGQVVAIKVVPVEEDLQEIIKEISILKQCDSPYIVKYYGSYFK 69

Query: 155 GSQRMLVYEF-----------VLNNTLVFHLHGKGQPTMDWPTRIKIAL---GSAKGLAY 200
            +   +V E+           + N TL               T  +IA     + KGL Y
Sbjct: 70  NTDLWIVMEYCGAGSVSDIMKITNKTL---------------TEEEIAAILYQTLKGLEY 114

Query: 201 LHD------DL--ANILLDFKFEAKVADFGLAKIASDVNTHVSTRVMGT 241
           LH       D+   NILL+ + +AK+ADFG++   +D     +T V+GT
Sbjct: 115 LHSNKKIHRDIKAGNILLNEEGQAKLADFGVSGQLTDTMAKRNT-VIGT 162

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256

>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

 Score = 45.2 bits (108), Expect = 1e-05
 Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 12/102 (11%)

Query: 133 EVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIK-IA 191
           E+ ++  + H ++V L+       +  LV+E+  +  L  +L  +  P +  P  IK I 
Sbjct: 48  EISLLKELKHPNIVKLLDVIHTERKLYLVFEY-CDMDLKKYLDKRPGP-LS-PNLIKSIM 104

Query: 192 LGSAKGLAYLHD------DL--ANILLDFKFEAKVADFGLAK 225
               +GLAY H       DL   NIL++     K+ADFGLA+
Sbjct: 105 YQLLRGLAYCHSHRILHRDLKPQNILINRDGVLKLADFGLAR 146

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH. Length = 282

>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

 Score = 44.9 bits (107), Expect = 1e-05
 Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 17/110 (15%)

Query: 132 AEVEIISRVHHKHLVSLVG-YYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRI-- 188
            E++ +      ++V   G +Y  G    +V E++   +L        +     P  +  
Sbjct: 48  RELKTLRSCESPYVVKCYGAFYKEGEIS-IVLEYMDGGSL----ADLLKKVGKIPEPVLA 102

Query: 189 KIALGSAKGLAYLHDDL---------ANILLDFKFEAKVADFGLAKIASD 229
            IA    KGL YLH            +N+L++ K E K+ADFG++K+  +
Sbjct: 103 YIARQILKGLDYLHTKRHIIHRDIKPSNLLINSKGEVKIADFGISKVLEN 152

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264

>gnl|CDD|133228 cd05097, PTKc_DDR_like, Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

 Score = 45.0 bits (106), Expect = 1e-05
 Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 18/120 (15%)

Query: 124 KEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHL--------- 174
           K    +F  E++I+SR+ + +++ L+G   +     ++ E++ N  L   L         
Sbjct: 58  KTARNDFLKEIKIMSRLKNPNIIRLLGVCVSDDPLCMITEYMENGDLNQFLSQREIESTF 117

Query: 175 -HGKGQPTMDWPTRIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAK 225
            H    P++     + +A+  A G+ YL      H DLA  N L+   +  K+ADFG+++
Sbjct: 118 THANNIPSVSIANLLYMAVQIASGMKYLASLNFVHRDLATRNCLVGNHYTIKIADFGMSR 177

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 295

>gnl|CDD|132960 cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

 Score = 44.4 bits (105), Expect = 2e-05
 Identities = 27/119 (22%), Positives = 55/119 (46%), Gaps = 16/119 (13%)

Query: 132 AEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTL--VFHLHGKGQPTMDWPTRIK 189
           +E+E +  + H ++V  +G+ T      +  E+V   ++      +G+ +  +     ++
Sbjct: 57  SEIETLKDLDHLNIVQYLGFETTEEYLSIFLEYVPGGSIGSCLRTYGRFEEQL-----VR 111

Query: 190 IALGSA-KGLAYLHD------DLA--NILLDFKFEAKVADFGLAKIASDVNTHVSTRVM 239
                  +GLAYLH       DL   N+L+D     K++DFG++K + D+  +     M
Sbjct: 112 FFTEQVLEGLAYLHSKGILHRDLKADNLLVDADGICKISDFGISKKSDDIYDNDQNMSM 170

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell integrity MAPK pathway, which is activated by stresses and aggressions to the cell wall. The MAPKKK Bck1, MAPKKs Mkk1 and Mkk2, and the MAPK Slt2 make up the cascade that is important in the maintenance of cell wall homeostasis. Fission yeast Mkh1 is involved in MAPK cascades regulating cell morphology, cell wall integrity, salt resistance, and filamentous growth in response to stress. Length = 272

>gnl|CDD|173649 cd05093, PTKc_TrkB, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

 Score = 44.3 bits (104), Expect = 2e-05
 Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 19/119 (15%)

Query: 126 GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFV----LNNTLVFH-----LHG 176
             ++F  E E+++ + H+H+V   G    G   ++V+E++    LN  L  H     L  
Sbjct: 50  ARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMA 109

Query: 177 KGQPTMDWPTR--IKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAK 225
           +G    +      + IA   A G+ YL      H DLA  N L+      K+ DFG+++
Sbjct: 110 EGNRPAELTQSQMLHIAQQIAAGMVYLASQHFVHRDLATRNCLVGENLLVKIGDFGMSR 168

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly expressed in the nervous system and in some non-neural tissues. It plays important roles in cell proliferation, differentiation, and survival. BDNF/Trk signaling plays a key role in regulating activity-dependent synaptic plasticity. TrkB also contributes to protection against gp120-induced neuronal cell death. TrkB overexpression is associated with poor prognosis in neuroblastoma (NB) and other human cancers. It acts as a suppressor of anoikis (detachment-induced apoptosis) and contributes to tumor metastasis. Length = 288

>gnl|CDD|173650 cd05094, PTKc_TrkC, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

 Score = 44.2 bits (104), Expect = 2e-05
 Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 22/120 (18%)

Query: 128 REFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTL--VFHLHG-------KG 178
           ++FQ E E+++ + H+H+V   G    G   ++V+E++ +  L      HG        G
Sbjct: 52  KDFQREAELLTNLQHEHIVKFYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDG 111

Query: 179 QP-----TMDWPTRIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAK 225
           QP      +     + IA   A G+ YL      H DLA  N L+      K+ DFG+++
Sbjct: 112 QPRQAKGELGLSQMLHIASQIASGMVYLASQHFVHRDLATRNCLVGANLLVKIGDFGMSR 171

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some non-neural tissues including the developing heart. NT3/TrkC signaling plays an important role in the innervation of the cardiac conducting system and the development of smooth muscle cells. Mice deficient with NT3 and TrkC have multiple heart defects. NT3/TrkC signaling is also critical for the development and maintenance of enteric neurons that are important for the control of gut peristalsis. Length = 291

>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family Serine/Threonine Kinases

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 16/118 (13%)

Query: 133 EVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIK-IA 191
           E++++  ++H +++ L+  +       LV+EF+  +        K +      + IK   
Sbjct: 48  EIKLLKELNHPNIIKLLDVFRHKGDLYLVFEFMDTDLYKLI---KDRQRGLPESLIKSYL 104

Query: 192 LGSAKGLAYLHD------DL--ANILLDFKFEAKVADFGLAKIA---SDVNTH-VSTR 237
               +GLA+ H       DL   N+L++ +   K+ADFGLA+         TH V TR
Sbjct: 105 YQLLQGLAFCHSHGILHRDLKPENLLINTEGVLKLADFGLARSFGSPVRPYTHYVVTR 162

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Length = 283

>gnl|CDD|173760 cd08220, STKc_Nek8, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

 Score = 43.7 bits (103), Expect = 3e-05
 Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 9/114 (7%)

Query: 124 KEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMD 183
           K+     Q E +++  + H +++     +      M+V E+    TL  ++  +    +D
Sbjct: 40  KDERLAAQNECQVLKLLSHPNIIEYYENFLEDKALMIVMEYAPGGTLAEYIQKRCNSLLD 99

Query: 184 WPT------RIKIALGSAKGLAYLHDDLA--NILLD-FKFEAKVADFGLAKIAS 228
             T      +I +AL        LH DL   NILLD  K   K+ DFG++KI S
Sbjct: 100 EDTILHFFVQILLALHHVHTKLILHRDLKTQNILLDKHKMVVKIGDFGISKILS 153

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with a rare form of juvenile renal cystic disease, nephronophthisis type 9. It has been suggested that a defect in the ciliary localization of Nek8 contributes to the development of cysts manifested by these diseases. Length = 256

>gnl|CDD|173656 cd05111, PTK_HER3, Pseudokinase domain of the Protein Tyrosine Kinase, HER3

 Score = 43.8 bits (103), Expect = 3e-05
 Identities = 39/146 (26%), Positives = 64/146 (43%), Gaps = 38/146 (26%)

Query: 112 FGYVHRGV-LPNG--------------KEGEREFQAEVE---IISRVHHKHLVSLVGYYT 153
           FG VH+G+ +P G              + G + FQ   +    +  + H ++V L+G   
Sbjct: 20  FGTVHKGIWIPEGDSIKIPVAIKTIQDRSGRQTFQEITDHMLAMGSLDHAYIVRLLGI-C 78

Query: 154 AGSQRMLVYEFVLNNTLVFHLHGKG-----QPTMDWPTRIKIALGSAKGLAYL------H 202
            G+   LV +     +L+ H+         Q  ++W  +I      AKG+ YL      H
Sbjct: 79  PGASLQLVTQLSPLGSLLDHVRQHRDSLDPQRLLNWCVQI------AKGMYYLEEHRMVH 132

Query: 203 DDLA--NILLDFKFEAKVADFGLAKI 226
            +LA  NILL      ++ADFG+A +
Sbjct: 133 RNLAARNILLKSDSIVQIADFGVADL 158

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER3 binds the neuregulin ligands, NRG1 and NRG2. HER3 contains an impaired tyr kinase domain and relies on its heterodimerization partners for activity following ligand binding. The HER2-HER3 heterodimer constitutes a high affinity co-receptor capable of potent mitogenic signaling. HER3 participates in a signaling pathway involved in the proliferation, survival, adhesion, and motility of tumor cells. Length = 279

>gnl|CDD|173680 cd05589, STKc_PKN, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 11/99 (11%)

Query: 135 EIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGS 194
           E  +   H  LV+L   +        V E+     L+ H+H         P  +  A   
Sbjct: 54  ETANSERHPFLVNLFACFQTEDHVCFVMEYAAGGDLMMHIH---TDVFSEPRAVFYAACV 110

Query: 195 AKGLAYLHDD--------LANILLDFKFEAKVADFGLAK 225
             GL YLH++        L N+LLD +   K+ADFGL K
Sbjct: 111 VLGLQYLHENKIVYRDLKLDNLLLDTEGFVKIADFGLCK 149

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved in many biological processes including cytokeletal regulation, cell adhesion, vesicle transport, glucose transport, regulation of meiotic maturation and embryonic cell cycles, signaling to the nucleus, and tumorigenesis. Length = 324

>gnl|CDD|133200 cd05069, PTKc_Yes, Catalytic domain of the Protein Tyrosine Kinase, Yes

 Score = 43.5 bits (102), Expect = 4e-05
 Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 13/120 (10%)

Query: 120 LPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQR--MLVYEFVLNNTLVFHLHGK 177
           L  G      F  E +I+ ++ H  LV L   Y   S+    +V EF+   +L+  L   
Sbjct: 38  LKPGTMMPEAFLQEAQIMKKLRHDKLVPL---YAVVSEEPIYIVTEFMGKGSLLDFLKEG 94

Query: 178 GQPTMDWPTRIKIALGSAKGLA------YLHDDL--ANILLDFKFEAKVADFGLAKIASD 229
               +  P  + +A   A G+A      Y+H DL  ANIL+      K+ADFGLA++  D
Sbjct: 95  DGKYLKLPQLVDMAAQIADGMAYIERMNYIHRDLRAANILVGDNLVCKIADFGLARLIED 154

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. c-Yes kinase is the cellular homolog of the oncogenic protein (v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma viruses. It displays functional overlap with other Src subfamily members, particularly Src. It also shows some unique functions such as binding to occludins, transmembrane proteins that regulate extracellular interactions in tight junctions. Yes also associates with a number of proteins in different cell types that Src does not interact with, like JAK2 and gp130 in pre-adipocytes, and Pyk2 in treated pulmonary vein endothelial cells. Although the biological function of Yes remains unclear, it appears to have a role in regulating cell-cell interactions and vesicle trafficking in polarized cells. Length = 260

>gnl|CDD|132965 cd06634, STKc_TAO2, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

 Score = 43.5 bits (102), Expect = 4e-05
 Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 15/127 (11%)

Query: 122 NGKEGEREFQ---AEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNN-TLVFHLHGK 177
           +GK+   ++Q    EV  + ++ H + +   G Y       LV E+ L + + +  +H K
Sbjct: 51  SGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEYCLGSASDLLEVHKK 110

Query: 178 GQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD 229
               ++      +  G+ +GLAYLH            NILL      K+ DFG A I + 
Sbjct: 111 PLQEVEIAA---VTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAP 167

Query: 230 VNTHVST 236
            N  V T
Sbjct: 168 ANXFVGT 174

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. TAO2 contains a long C-terminal extension with autoinhibitory segments. It is activated by the release of this inhibition and the phosphorylation of its activation loop serine. TAO2 functions as a regulator of actin cytoskeletal and microtubule organization. In addition, it regulates the transforming growth factor-activated kinase 1 (TAK1), which is a MAPKKK that plays an essential role in the signaling pathways of tumor necrosis factor (TNF), interleukin 1 (IL-1), and Toll-like receptor (TLR). Length = 308

>gnl|CDD|132964 cd06633, STKc_TAO3, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

 Score = 43.5 bits (102), Expect = 4e-05
 Identities = 36/127 (28%), Positives = 59/127 (46%), Gaps = 15/127 (11%)

Query: 122 NGKEGEREFQ---AEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNN-TLVFHLHGK 177
           +GK+   ++Q    EV+ + ++ H + +   G Y       LV E+ L + + +  +H K
Sbjct: 57  SGKQTNEKWQDIIKEVKFLQQLKHPNTIEYKGCYLKEHTAWLVMEYCLGSASDLLEVHKK 116

Query: 178 GQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD 229
               ++      I  G+ +GLAYLH            NILL    + K+ADFG A  +S 
Sbjct: 117 PLQEVEIAA---ITHGALQGLAYLHSHNMIHRDIKAGNILLTEPGQVKLADFGSASKSSP 173

Query: 230 VNTHVST 236
            N+ V T
Sbjct: 174 ANSFVGT 180

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a component of the RAM (regulation of Ace2p activity and cellular morphogenesis) signaling pathway. TAO3 is upregulated in retinal ganglion cells after axotomy, and may play a role in apoptosis. Length = 313

>gnl|CDD|173668 cd05577, STKc_GRK, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

 Score = 43.3 bits (102), Expect = 4e-05
 Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 8/109 (7%)

Query: 124 KEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMD 183
           ++GE+    E +I+ +V  + +VSL   +       LV   +    L +H++  G+P   
Sbjct: 34  RKGEQMALNEKKILEKVSSRFIVSLAYAFETKDDLCLVMTLMNGGDLKYHIYNVGEPGFP 93

Query: 184 WPTRIKIALGSAKGLAYLHD------DL--ANILLDFKFEAKVADFGLA 224
               I  A     GL +LH       DL   N+LLD     +++D GLA
Sbjct: 94  EARAIFYAAQIICGLEHLHQRRIVYRDLKPENVLLDDHGNVRISDLGLA 142

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of G protein signaling) homology (RH) domain and several motifs. The C-terminus diverges among different groups of GRKs. There are seven types of GRKs, named GRK1 to GRK7. They are subdivided into three main groups: visual (GRK1/7); beta-adrenergic receptor kinases (GRK2/3); and GRK4-like (GRK4/5/6). Expression of GRK2/3/5/6 is widespread while GRK1/4/7 show a limited tissue distribution. The substrate spectrum of the widely expressed GRKs partially overlaps. GRKs play important roles in the cardiovascular, immune, respiratory, skeletal, and nervous systems. Length = 277

>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

 Score = 42.9 bits (101), Expect = 5e-05
 Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 17/121 (14%)

Query: 133 EVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHG-KGQPTMD---WPTRI 188
           E  +++++   +++     +    +  +V E+  N  L   L   +G+P  +   W   I
Sbjct: 49  EARVLAKLDSSYIIRYYESFLDKGKLNIVMEYAENGDLHKLLKMQRGRPLPEDQVWRFFI 108

Query: 189 KIALGSAKGLAYLHD------DL--ANILLDFKFEAKVADFGLAKIASDVNTHVSTRVMG 240
           +I LG    LA+LH       D+   N+ LD     K+ D G+AK+ SD NT+ +  ++G
Sbjct: 109 QILLG----LAHLHSKKILHRDIKSLNLFLDAYDNVKIGDLGVAKLLSD-NTNFANTIVG 163

Query: 241 T 241
           T
Sbjct: 164 T 164

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cycle progression. No cellular function has yet been ascribed to CNK4. Length = 256

>gnl|CDD|133227 cd05096, PTKc_DDR1, Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

 Score = 43.0 bits (101), Expect = 5e-05
 Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 25/127 (19%)

Query: 124 KEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFV----LNNTLVFH--LHGK 177
           K    +F  EV+I+SR+   +++ L+G         ++ E++    LN  L  H     +
Sbjct: 60  KNARNDFLKEVKILSRLKDPNIIRLLGVCVDEDPLCMITEYMENGDLNQFLSSHHLDDKE 119

Query: 178 GQ-----------PTMDWPTRIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKV 218
                        P + + + + +AL  A G+ YL      H DLA  N L+      K+
Sbjct: 120 ENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYLSSLNFVHRDLATRNCLVGENLTIKI 179

Query: 219 ADFGLAK 225
           ADFG+++
Sbjct: 180 ADFGMSR 186

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in keratinocytes, colonic mucosa epithelium, lung epithelium, thyroid follicles, and the islets of Langerhans. During embryonic development, it is found in the developing neuroectoderm. DDR1 is a key regulator of cell morphogenesis, differentiation and proliferation. It is important in the development of the mammary gland, the vasculator and the kidney. DDR1 is also found in human leukocytes, where it facilitates cell adhesion, migration, maturation, and cytokine production. Length = 304

>gnl|CDD|173644 cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

 Score = 43.0 bits (101), Expect = 6e-05
 Identities = 32/114 (28%), Positives = 62/114 (54%), Gaps = 11/114 (9%)

Query: 122 NGKEGEREFQAEVEIISRVHHKHLVSLVGYYT--AGSQRMLVYEFVLNNTLVFHLHGKGQ 179
           +G     + + E+EI+  ++H+++V   G  T   G+   L+ EF+ + +L  +L  + +
Sbjct: 45  SGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYL-PRNK 103

Query: 180 PTMDWPTRIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAK 225
             ++   ++K A+   KG+ YL      H DLA  N+L++ + + K+ DFGL K
Sbjct: 104 NKINLKQQLKYAVQICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTK 157

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak1 is widely expressed in many tissues. Many cytokines are dependent on Jak1 for signaling, including those that use the shared receptor subunits common gamma chain (IL-2, IL-4, IL-7, IL-9, IL-15, IL-21) and gp130 (IL-6, IL-11, oncostatin M, G-CSF, and IFNs, among others). The many varied interactions of Jak1 and its ubiquitous expression suggest many biological roles. Jak1 is important in neurological development, as well as in lymphoid development and function. It also plays a role in the pathophysiology of cardiac hypertrophy and heart failure. A mutation in the ATP-binding site of Jak1 was identified in a human uterine leiomyosarcoma cell line, resulting in defective cytokine induction and antigen presentation, thus allowing the tumor to evade the immune system. Length = 284

>gnl|CDD|133168 cd05036, PTKc_ALK_LTK, Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

 Score = 42.4 bits (100), Expect = 8e-05
 Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 18/118 (15%)

Query: 125 EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDW 184
           + E +F  E  I+S+ +H+++V L+G       R ++ E +    L   L  + +P  + 
Sbjct: 51  QDESDFLMEALIMSKFNHQNIVRLIGVSFERLPRFILLELMAGGDLKSFLR-ENRPRPER 109

Query: 185 PTR------IKIALGSAKGLAYL------HDDLA--NILLDFKFE---AKVADFGLAK 225
           P+       +  A   AKG  YL      H D+A  N LL  K     AK+ADFG+A+
Sbjct: 110 PSSLTMKDLLFCARDVAKGCKYLEENHFIHRDIAARNCLLTCKGPGRVAKIADFGMAR 167

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well as visceral muscle differentiation in Drosophila. ALK is aberrantly expressed as fusion proteins, due to chromosomal translocations, in about 60% of anaplastic large cell lymphomas (ALCLs). ALK fusion proteins are also found in rare cases of diffuse large B cell lymphomas (DLBCLs). LTK is mainly expressed in B lymphocytes and neuronal tissues. It is important in cell proliferation and survival. Transgenic mice expressing TLK display retarded growth and high mortality rate. In addition, a polymorphism in mouse and human LTK is implicated in the pathogenesis of systemic lupus erythematosus. Length = 277

>gnl|CDD|133181 cd05050, PTKc_Musk, Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

 Score = 42.5 bits (100), Expect = 9e-05
 Identities = 33/127 (25%), Positives = 53/127 (41%), Gaps = 28/127 (22%)

Query: 127 EREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFV----LNN-------------- 168
           + +FQ E  +++   H ++V L+G    G    L++E++    LN               
Sbjct: 52  QADFQREAALMAEFDHPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRHRSPRAQCSLS 111

Query: 169 --TLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKV 218
             T      G     +    ++ IA   A G+AYL      H DLA  N L+      K+
Sbjct: 112 HSTSSARKCGLNPLPLSCTEQLCIAKQVAAGMAYLSERKFVHRDLATRNCLVGENMVVKI 171

Query: 219 ADFGLAK 225
           ADFGL++
Sbjct: 172 ADFGLSR 178

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates Musk autophosphorylation and activation, leading to the clustering of acetylcholine receptors (AChRs). To date, there is no evidence to suggest that agrin binds directly to Musk. Mutations in AChR, Musk and other partners are responsible for diseases of the NMJ, such as the autoimmune syndrome myasthenia gravis. Length = 288

>gnl|CDD|133193 cd05062, PTKc_IGF-1R, Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

 Score = 42.3 bits (99), Expect = 9e-05
 Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 16/113 (14%)

Query: 129 EFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHG-----KGQPTMD 183
           EF  E  ++   +  H+V L+G  + G   +++ E +    L  +L       +  P   
Sbjct: 55  EFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVQA 114

Query: 184 WPT---RIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAK 225
            P+    I++A   A G+AYL      H DLA  N ++   F  K+ DFG+ +
Sbjct: 115 PPSLKKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTR 167

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, where it is frequently overexpressed, IGF-1R is implicated in proliferation, the suppression of apoptosis, invasion, and metastasis. IGF-1R is being developed as a therapeutic target in cancer treatment. Length = 277

>gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase, Fer

 Score = 42.3 bits (99), Expect = 1e-04
 Identities = 40/145 (27%), Positives = 65/145 (44%), Gaps = 22/145 (15%)

Query: 106 LLRQDGFGYVHRGVLPNG-------------KEGEREFQAEVEIISRVHHKHLVSLVGYY 152
           LL +  FG V +G L +              +E + +F +E  I+ +  H ++V L+G  
Sbjct: 2   LLGKGNFGEVFKGTLKDKTPVAVKTCKEDLPQELKIKFLSEARILKQYDHPNIVKLIGVC 61

Query: 153 TAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL------HDDLA 206
           T      +V E V     +  L  K +  +     +K AL +A G+AYL      H DLA
Sbjct: 62  TQRQPIYIVMELVPGGDFLSFLRKK-KDELKTKQLVKFALDAAAGMAYLESKNCIHRDLA 120

Query: 207 --NILLDFKFEAKVADFGLAKIASD 229
             N L+      K++DFG+++   D
Sbjct: 121 ARNCLVGENNVLKISDFGMSRQEDD 145

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. Length = 250

>gnl|CDD|133189 cd05058, PTKc_Met_Ron, Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

 Score = 42.1 bits (99), Expect = 1e-04
 Identities = 36/112 (32%), Positives = 48/112 (42%), Gaps = 22/112 (19%)

Query: 129 EFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTR- 187
           +F  E  I+    H +++SL+G         L  E      L +  HG  +  +   T  
Sbjct: 42  QFLKEGIIMKDFSHPNVLSLLGI-------CLPSEGSPLVVLPYMKHGDLRNFIRSETHN 94

Query: 188 ------IKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAK 225
                 I   L  AKG+ YL      H DLA  N +LD  F  KVADFGLA+
Sbjct: 95  PTVKDLIGFGLQVAKGMEYLASKKFVHRDLAARNCMLDESFTVKVADFGLAR 146

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also called the HGF receptor. HGF/Met signaling plays a role in growth, transformation, cell motility, invasion, metastasis, angiogenesis, wound healing, and tissue regeneration. Aberrant expression of Met through mutations or gene amplification is associated with many human cancers including hereditary papillary renal and gastric carcinomas. The ligand for Ron is macrophage stimulating protein (MSP). Ron signaling is important in regulating cell motility, adhesion, proliferation, and apoptosis. Aberrant Ron expression is implicated in tumorigenesis and metastasis. Length = 262

>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 15/118 (12%)

Query: 133 EVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIAL 192
           EV+++ ++ H+++V+L   +    +  LV+E+V    L   L       +          
Sbjct: 50  EVKVLRQLRHENIVNLKEAFRRKGRLYLVFEYVERTLL--ELLEASPGGLPPDAVRSYIW 107

Query: 193 GSAKGLAYLHD------DL--ANILLDFKFEAKVADFGLAKI-----ASDVNTHVSTR 237
              + +AY H       D+   NIL+      K+ DFG A+      AS +  +V+TR
Sbjct: 108 QLLQAIAYCHSHNIIHRDIKPENILVSESGVLKLCDFGFARALRARPASPLTDYVATR 165

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning and memory. Length = 288

>gnl|CDD|133221 cd05090, PTKc_Ror1, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

 Score = 41.9 bits (98), Expect = 1e-04
 Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 23/120 (19%)

Query: 129 EFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHL-------------- 174
           EFQ E  +++ +HH ++V L+G  T      +++E++    L   L              
Sbjct: 53  EFQQEASLMAELHHPNIVCLLGVVTQEQPVCMLFEYLNQGDLHEFLIMRSPHSDVGCSSD 112

Query: 175 -HGKGQPTMDWPTRIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAK 225
             G  + ++D    + IA+  A G+ YL      H DLA  NIL+  +   K++D GL++
Sbjct: 113 EDGTVKSSLDHGDFLHIAIQIAAGMEYLSSHFFVHKDLAARNILIGEQLHVKISDLGLSR 172

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. Avian Ror1 was found to be involved in late limb development. Studies in mice reveal that Ror1 is important in the regulation of neurite growth in central neurons, as well as in respiratory development. Loss of Ror1 also enhances the heart and skeletal abnormalities found in Ror2-deficient mice. Length = 283

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 42/160 (26%), Positives = 57/160 (35%), Gaps = 35/160 (21%)

Query: 112 FGYVHRGVLPNGKEGE-----------------REFQAEVEIISRVHHKHLVSLVGYYTA 154
           FG V+  V  N   GE                 +E   E++++  + H +LV    YY  
Sbjct: 13  FGKVYTAV--NLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNLVK---YYGV 67

Query: 155 GSQRMLVY---EFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD------DL 205
              R  VY   E+    TL   L               + L   +GLAYLH       D+
Sbjct: 68  EVHREKVYIFMEYCSGGTLEELLEHGRILDEHVIRVYTLQL--LEGLAYLHSHGIVHRDI 125

Query: 206 --ANILLDFKFEAKVADFGLAKIASDVNTHVSTRVMGTFG 243
             ANI LD     K+ DFG A    +  T +   V    G
Sbjct: 126 KPANIFLDHNGVIKLGDFGCAVKLKNNTTTMGEEVQSLAG 165

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|173675 cd05584, STKc_p70S6K, Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 8/111 (7%)

Query: 131 QAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMD----WPT 186
           +AE  I+  V H  +V L+  +  G +  L+ E++    L  HL  +G    D    + +
Sbjct: 48  KAERNILEAVKHPFIVDLIYAFQTGGKLYLILEYLSGGELFMHLEREGIFMEDTACFYLS 107

Query: 187 RIKIALGSAKGLAYLHDDLA--NILLDFKFEAKVADFGLAK--IASDVNTH 233
            I +AL        ++ DL   NILLD +   K+ DFGL K  I     TH
Sbjct: 108 EISLALEHLHQQGIIYRDLKPENILLDAQGHVKLTDFGLCKESIHEGTVTH 158

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the insulin receptor substrate IRS-1, among others. Mammals contain two isoforms of p70S6K, named S6K1 and S6K2 (or S6K-beta). Length = 323

>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 36/117 (30%), Positives = 53/117 (45%), Gaps = 17/117 (14%)

Query: 133 EVEIISRV-HHKHLVSLVGYYTAGSQRML--VYEFVLNNTLVFHLHGKGQPTMDWPTRIK 189
           E E+++R+  H  ++ L  YYT   +  L  V E+  N  L+ ++   G       TR  
Sbjct: 51  EKEVLTRLNGHPGIIKL--YYTFQDEENLYFVLEYAPNGELLQYIRKYGSLDEKC-TRFY 107

Query: 190 IA-LGSAKGLAYLHD------DLA--NILLDFKFEAKVADFGLAKIASDVNTHVSTR 237
            A +  A  L YLH       DL   NILLD     K+ DFG AK+    ++  S +
Sbjct: 108 AAEILLA--LEYLHSKGIIHRDLKPENILLDKDMHIKITDFGTAKVLDPNSSPESNK 162

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280

>gnl|CDD|173645 cd05084, PTKc_Fes, Catalytic domain of the Protein Tyrosine Kinase, Fes

 Score = 41.5 bits (97), Expect = 2e-04
 Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 11/121 (9%)

Query: 117 RGVLPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHG 176
           R  LP   + + +F  E  I+ +  H ++V L+G  T      +V E V     +  L  
Sbjct: 29  RETLP--PDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDFLTFLRT 86

Query: 177 KGQPTMDWPTRIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAKIAS 228
           +G P +     I++   +A G+ YL      H DLA  N L+  K   K++DFG+++   
Sbjct: 87  EG-PRLKVKELIQMVENAAAGMEYLESKHCIHRDLAARNCLVTEKNVLKISDFGMSREEE 145

Query: 229 D 229
           D
Sbjct: 146 D 146

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells. It plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. A recent study implicates Fes kinase as a tumor suppressor in colorectal cancer. Length = 252

>gnl|CDD|234389 TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclase fusion protein

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 33/130 (25%), Positives = 55/130 (42%), Gaps = 13/130 (10%)

Query: 125 EGERE---FQAEVEIISRVHHKHLVSLVGYYTAGSQRML-VYEFVLNNTLVFHLHGKG-- 178
           E E +   F+ E  + +R++H ++V+L+    A    +  V+E+V   TL   L   G  
Sbjct: 17  EEEHQRARFRRETALCARLYHPNIVALLDSGEAPPGLLFAVFEYVPGRTLREVLAADGAL 76

Query: 179 --QPTMDWPTRIKIALGSAKGLAYLHDDLA--NILL---DFKFEAKVADFGLAKIASDVN 231
               T     ++  AL  A     +H DL   NI++     +  AKV DFG+  +   V 
Sbjct: 77  PAGETGRLMLQVLDALACAHNQGIVHRDLKPQNIMVSQTGVRPHAKVLDFGIGTLLPGVR 136

Query: 232 THVSTRVMGT 241
                 +  T
Sbjct: 137 DADVATLTRT 146

This model represents proteins of 1350 in length, in multiple species of Burkholderia, in Acidovorax avenae subsp. citrulli AAC00-1 and Delftia acidovorans SPH-1, and in multiple copies in Sorangium cellulosum, in genomic neighborhoods that include a cyclodehydratase/docking scaffold fusion protein (TIGR03882) and a member of the thiazole/oxazole modified metabolite (TOMM) precursor family TIGR03795. It has a kinase domain in the N-terminal 300 amino acids, followed by a cyclase homology domain, followed by regions without named domain definitions. It is a probable bacteriocin-like metabolite biosynthesis protein [Cellular processes, Toxin production and resistance]. Length = 1266

>gnl|CDD|173655 cd05110, PTKc_HER4, Catalytic domain of the Protein Tyrosine Kinase, HER4

 Score = 41.6 bits (97), Expect = 2e-04
 Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 20/117 (17%)

Query: 123 GKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGK----- 177
           G +   EF  E  I++ + H HLV L+G   + + + LV + + +  L+ ++H       
Sbjct: 49  GPKANVEFMDEALIMASMDHPHLVRLLGVCLSPTIQ-LVTQLMPHGCLLDYVHEHKDNIG 107

Query: 178 GQPTMDWPTRIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAKI 226
            Q  ++W  +I      AKG+ YL      H DLA  N+L+      K+ DFGLA++
Sbjct: 108 SQLLLNWCVQI------AKGMMYLEERRLVHRDLAARNVLVKSPNHVKITDFGLARL 158

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands that bind HER4 fall into two groups, the neuregulins (or heregulins) and some EGFR (HER1) ligands including betacellulin, HBEGF, and epiregulin. All four neuregulins (NRG1-4) interact with HER4. Upon ligand binding, HER4 forms homo- or heterodimers with other HER proteins. HER4 is essential in embryonic development. It is implicated in mammary gland, cardiac, and neural development. As a postsynaptic receptor of NRG1, HER4 plays an important role in synaptic plasticity and maturation. The impairment of NRG1/HER4 signaling may contribute to schizophrenia. Length = 303

>gnl|CDD|173671 cd05580, STKc_PKA, Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

 Score = 41.0 bits (97), Expect = 2e-04
 Identities = 34/105 (32%), Positives = 44/105 (41%), Gaps = 16/105 (15%)

Query: 132 AEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRI--- 188
            E  I+  + H  LV+L G +   S   LV E+V    L  HL   G+       R    
Sbjct: 50  NEKRILQSIRHPFLVNLYGSFQDDSNLYLVMEYVPGGELFSHLRKSGRFPEPV-ARFYAA 108

Query: 189 KIALGSAKGLAYLHD------DLA--NILLDFKFEAKVADFGLAK 225
           ++ L     L YLH       DL   N+LLD     K+ DFG AK
Sbjct: 109 QVVL----ALEYLHSLDIVYRDLKPENLLLDSDGYIKITDFGFAK 149

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubiquitously in cells and interacts with many different downstream targets. It plays a role in the regulation of diverse processes such as growth, development, memory, metabolism, gene expression, immunity, and lipolysis. Length = 290

>gnl|CDD|173738 cd07835, STKc_CDK1_like, Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 32/103 (31%), Positives = 55/103 (53%), Gaps = 11/103 (10%)

Query: 133 EVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIAL 192
           E+ ++  ++H ++V L+    + ++  LV+EF L+  L  ++       +D P  IK  L
Sbjct: 48  EISLLKELNHPNIVRLLDVVHSENKLYLVFEF-LDLDLKKYMDSSPLTGLD-PPLIKSYL 105

Query: 193 GS-AKGLAY------LHDDLA--NILLDFKFEAKVADFGLAKI 226
               +G+AY      LH DL   N+L+D +   K+ADFGLA+ 
Sbjct: 106 YQLLQGIAYCHSHRVLHRDLKPQNLLIDREGALKLADFGLARA 148

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression while the CDK1/cyclin B complex is critical for G2 to M phase transition. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. Studies in knockout mice revealed that CDK1 can compensate for the loss of the cdk2 gene as it can also bind cyclin E and drive G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 283

>gnl|CDD|133204 cd05073, PTKc_Hck, Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

 Score = 40.8 bits (95), Expect = 3e-04
 Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 9/108 (8%)

Query: 130 FQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIK 189
           F AE  ++  + H  LV L    T      ++ EF+   +L+  L          P  I 
Sbjct: 48  FLAEANVMKTLQHDKLVKLHAVVTK-EPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLID 106

Query: 190 IALGSAKGLAYL------HDDL--ANILLDFKFEAKVADFGLAKIASD 229
            +   A+G+A++      H DL  ANIL+      K+ADFGLA++  D
Sbjct: 107 FSAQIAEGMAFIEQRNYIHRDLRAANILVSASLVCKIADFGLARVIED 154

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Hck is present in myeloid and lymphoid cells that play a role in the development of cancer. It may be important in the oncogenic signaling of the protein Tel-Abl, which induces a chronic myelogenous leukemia (CML)-like disease. Hck also acts as a negative regulator of granulocyte colony-stimulating factor (G-CSF)-induced proliferation of granulocytic precursors, suggesting a possible role in the development of acute myeloid leukemia (AML). In addition, Hck is essential in regulating the degranulation of polymorphonuclear leukocytes (PMNs). Genetic polymorphisms affect the expression level of Hck, which affects PMN mediator release and influences the development of chronic obstructive pulmonary disease (COPD). Length = 260

>gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

 Score = 40.7 bits (95), Expect = 3e-04
 Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 29/122 (23%)

Query: 122 NGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQR--MLVYEFVLNNTLVFHLHGKGQ 179
            G++    ++ E+ I+  ++H+++V   G  +    +   L+ E+V   +L         
Sbjct: 45  CGQQNTSGWKKEINILKTLYHENIVKYKGCCSEQGGKGLQLIMEYVPLGSL--------- 95

Query: 180 PTMDWPTRIKIALGS--------AKGLAYLHD------DLA--NILLDFKFEAKVADFGL 223
              D+  + K+ L           +G+AYLH       DLA  N+LLD     K+ DFGL
Sbjct: 96  --RDYLPKHKLNLAQLLLFAQQICEGMAYLHSQHYIHRDLAARNVLLDNDRLVKIGDFGL 153

Query: 224 AK 225
           AK
Sbjct: 154 AK 155

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Tyk2 is widely expressed in many tissues. It is involved in signaling via the cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell surface urokinase receptor (uPAR) signaling and plays a role in modulating vascular smooth muscle cell (VSMC) functional behavior in response to injury. Tyk2 is also important in dendritic cell function and T helper (Th)1 cell differentiation. A homozygous mutation of Tyk2 was found in a patient with hyper-IgE syndrome (HIES), a primary immunodeficiency characterized by recurrent skin abscesses, pneumonia, and elevated serum IgE. This suggests that Tyk2 may play important roles in multiple cytokine signaling involved in innate and adaptive immunity. Length = 283

>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 13/66 (19%)

Query: 185 PTRI--KIALGSAKGLAYLHDDL---------ANILLDFKFEAKVADFGLAK--IASDVN 231
           P RI  KIA+   KGL YLH+           +NIL++ + + K+ DFG++   + S   
Sbjct: 98  PERILGKIAVAVLKGLTYLHEKHKIIHRDVKPSNILVNSRGQIKLCDFGVSGQLVNSLAK 157

Query: 232 THVSTR 237
           T V T 
Sbjct: 158 TFVGTS 163

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residues. There are three MAPK subfamilies: extracellular signal-regulated kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In mammalian cells, there are seven MAPKKs (named MKK1-7) and 20 MAPKKKs. Each MAPK subfamily can be activated by at least two cognate MAPKKs and by multiple MAPKKKs. Length = 265

>gnl|CDD|215036 PLN00034, PLN00034, mitogen-activated protein kinase kinase; Provisional

 Score = 40.6 bits (95), Expect = 4e-04
 Identities = 57/230 (24%), Positives = 91/230 (39%), Gaps = 37/230 (16%)

Query: 12  QNVPPPAAHVVTQPPRSSPPPLVASSPPHSPVYTPSPPLPPPPFMSNSGGSGSNYSGSEA 71
             +P  A H     PR  P  L    P   P      PLPPP   S+S  S S+ +   A
Sbjct: 10  VPLPSTARHTTKSRPRRRPD-LTLPLPQRDPSLAVPLPLPPPS--SSSSSSSSSSASGSA 66

Query: 72  PILPQSPGLSLGFSKSTFTYEELARATDGFSDAN------LLRQDGFGYVHRGVLPNGKE 125
           P   +S               EL R     S A       + R  G  Y  + +  N ++
Sbjct: 67  PSAAKS-------------LSELERVNRIGSGAGGTVYKVIHRPTGRLYALKVIYGNHED 113

Query: 126 G-EREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDW 184
              R+   E+EI+  V+H ++V     +    +  ++ EF+   +L      +G    D 
Sbjct: 114 TVRRQICREIEILRDVNHPNVVKCHDMFDHNGEIQVLLEFMDGGSL------EGTHIADE 167

Query: 185 PTRIKIALGSAKGLAYLHD------DL--ANILLDFKFEAKVADFGLAKI 226
                +A     G+AYLH       D+  +N+L++     K+ADFG+++I
Sbjct: 168 QFLADVARQILSGIAYLHRRHIVHRDIKPSNLLINSAKNVKIADFGVSRI 217

Length = 353

>gnl|CDD|173632 cd05051, PTKc_DDR, Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 36/156 (23%), Positives = 64/156 (41%), Gaps = 36/156 (23%)

Query: 91  YEELARATDGFSDANLLRQDGFGYVHRGVLPNGKEGER-EFQAEVEIISRVHHKHLVSLV 149
           + E A A +  +DA +L         + + P+  +  R +F  EV+I+SR+   ++  L+
Sbjct: 32  FSEKAFAENDNADAPVL------VAVKVLRPDASDNAREDFLKEVKILSRLSDPNIARLL 85

Query: 150 G-------------YYTAG--SQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGS 194
           G             Y   G  +Q +  +    +             ++ + T + +A   
Sbjct: 86  GVCTVDPPLCMIMEYMENGDLNQFLQKHVAETSGLAC------NSKSLSFSTLLYMATQI 139

Query: 195 AKGLAYL------HDDLA--NILLDFKFEAKVADFG 222
           A G+ YL      H DLA  N L+   +  K+ADFG
Sbjct: 140 ASGMRYLESLNFVHRDLATRNCLVGKNYTIKIADFG 175

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 296

>gnl|CDD|173669 cd05578, STKc_Yank1, Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 23/120 (19%)

Query: 133 EVEIISRVHHKHLVSLVGYYT-AGSQRM-LVYEFVLNNTLVFHLHGKGQPTMDWPTRIKI 190
           E  I+  ++H  LV+L  +Y+    + M LV + +L   L +HL  +     +   +  I
Sbjct: 50  ERRILQELNHPFLVNL--WYSFQDEENMYLVVDLLLGGDLRYHL-SQKVKFSEEQVKFWI 106

Query: 191 A-LGSAKGLAYLHD------DLA--NILLDFKFEAKVADFGLAKIASDVNTHVSTRVMGT 241
             +  A  L YLH       D+   NILLD +    + DF +A       T V+   + T
Sbjct: 107 CEIVLA--LEYLHSKGIIHRDIKPDNILLDEQGHVHITDFNIA-------TKVTPDTLTT 157

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. Length = 258

>gnl|CDD|173719 cd05630, STKc_GRK6, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

 Score = 40.0 bits (93), Expect = 5e-04
 Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 8/109 (7%)

Query: 124 KEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMD 183
           ++GE     E +I+ +V+ + +VSL   Y       LV   +    L FH++  G+   +
Sbjct: 41  RKGESMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTLMNGGDLKFHIYHMGEAGFE 100

Query: 184 WPTRIKIALGSAKGLAYLHD------DLA--NILLDFKFEAKVADFGLA 224
               +  A     GL  LH       DL   NILLD     +++D GLA
Sbjct: 101 EGRAVFYAAEICCGLEDLHQERIVYRDLKPENILLDDHGHIRISDLGLA 149

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as multiple splice variants with different domain architectures. It is post-translationally palmitoylated and localized in the membrane. GRK6 plays important roles in the regulation of dopamine, M3 muscarinic, opioid, and chemokine receptor signaling. It also plays maladaptive roles in addiction and Parkinson's disease. GRK6-deficient mice exhibit altered dopamine receptor regulation, decreased lymphocyte chemotaxis, and increased acute inflammation and neutrophil chemotaxis. Length = 285

>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

 Score = 39.5 bits (93), Expect = 6e-04
 Identities = 26/62 (41%), Positives = 32/62 (51%), Gaps = 11/62 (17%)

Query: 186 TRIKIAL-----GSAKGLAYLHDDL--ANILLDFKFEAKVADFGLAKI----ASDVNTHV 234
           T++ +AL      S  G   LH DL  ANI LD     K+ DFGLAKI    +S   T+V
Sbjct: 112 TQLLLALYECHNRSDPGNTVLHRDLKPANIFLDANNNVKLGDFGLAKILGHDSSFAKTYV 171

Query: 235 ST 236
            T
Sbjct: 172 GT 173

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exit. NIMA is involved in nuclear membrane fission. Vertebrate Nek2 is a cell cycle-regulated STK, localized in centrosomes and kinetochores, that regulates centrosome splitting at the G2/M phase. It also interacts with other mitotic kinases such as Polo-like kinase 1 and may play a role in spindle checkpoint. An increase in the expression of the human NEK2 gene is strongly associated with the progression of non-Hodgkin lymphoma. Length = 265

>gnl|CDD|240233 PTZ00024, PTZ00024, cyclin-dependent protein kinase; Provisional

 Score = 39.7 bits (93), Expect = 6e-04
 Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 23/107 (21%)

Query: 133 EVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIK--- 189
           E++I++ + H++++ LV  Y  G    LV +          +    +  +D   R+    
Sbjct: 70  ELKIMNEIKHENIMGLVDVYVEGDFINLVMDI---------MASDLKKVVDRKIRLTESQ 120

Query: 190 ---IALGSAKGLAYLHD------DL--ANILLDFKFEAKVADFGLAK 225
              I L    GL  LH       DL  ANI ++ K   K+ADFGLA+
Sbjct: 121 VKCILLQILNGLNVLHKWYFMHRDLSPANIFINSKGICKIADFGLAR 167

Length = 335

>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA carboxylase

 Score = 39.1 bits (91), Expect = 0.001
 Identities = 16/52 (30%), Positives = 19/52 (36%), Gaps = 7/52 (13%)

Query: 15  PPPAAHVVTQPPRS-------SPPPLVASSPPHSPVYTPSPPLPPPPFMSNS 59
           PPP A VV   P         SPP    +    +    P+P  PPP     S
Sbjct: 144 PPPPAPVVMMQPPPPHAMPPASPPAAQPAPSAPASSPPPTPASPPPAKAPKS 195

Length = 274

>gnl|CDD|173761 cd08221, STKc_Nek9, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

 Score = 39.0 bits (91), Expect = 0.001
 Identities = 25/124 (20%), Positives = 51/124 (41%), Gaps = 9/124 (7%)

Query: 126 GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWP 185
             R+   E+ I+S + H ++++   ++   +  ++  E+    TL   +  +     +  
Sbjct: 42  ERRDALNEIVILSLLQHPNIIAYYNHFMDDNTLLIEMEYANGGTLYDKIVRQKGQLFEEE 101

Query: 186 TRIKIALGSAKGLAY------LHDDL--ANILLDFKFEAKVADFGLAKIASDVNTHVSTR 237
             +         ++Y      LH D+   NI L      K+ DFG++KI     +   T 
Sbjct: 102 MVLWYLFQIVSAVSYIHKAGILHRDIKTLNIFLTKAGLIKLGDFGISKILGSEYSMAET- 160

Query: 238 VMGT 241
           V+GT
Sbjct: 161 VVGT 164

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associates with FACT (FAcilitates Chromatin Transcription) and modulates interphase progression. It also interacts with Nek6, and Nek7, during mitosis, resulting in their activation. Length = 256

>gnl|CDD|173651 cd05095, PTKc_DDR2, Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

 Score = 39.1 bits (91), Expect = 0.001
 Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 17/119 (14%)

Query: 124 KEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFV----LNNTLVFH-----L 174
           K    +F  E++I+SR+   +++ L+          ++ E++    LN  L  H      
Sbjct: 60  KNARNDFLKEIKIMSRLKDPNIIRLLAVCITSDPLCMITEYMENGDLNQFLSRHEPQEAA 119

Query: 175 HGKGQPTMDWPTRIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAK 225
                 T+ + T I +A   A G+ YL      H DLA  N L+   +  K+ADFG+++
Sbjct: 120 EKADVVTISYSTLIFMATQIASGMKYLSSLNFVHRDLATRNCLVGKNYTIKIADFGMSR 178

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues with the highest levels found in skeletal muscle, skin, kidney and lung. It is important in cell proliferation and development. Mice, with a deletion of DDR2, suffer from dwarfism and delayed healing of epidermal wounds. DDR2 also contributes to collagen (type I) regulation by inhibiting fibrillogenesis and altering the morphology of collagen fibers. It is also expressed in immature dendritic cells (DCs), where it plays a role in DC activation and function. Length = 296

>gnl|CDD|133230 cd05099, PTKc_FGFR4, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

 Score = 39.2 bits (91), Expect = 0.001
 Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 23/128 (17%)

Query: 132 AEVEIISRV-HHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMD------- 183
           +E+E++  +  HK++++L+G  T      ++ E+     L   L  +  P  D       
Sbjct: 66  SEMELMKLIGKHKNIINLLGVCTQEGPLYVIVEYAAKGNLREFLRARRPPGPDYTFDITK 125

Query: 184 -------WPTRIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAKIAS 228
                  +   +  A   A+G+ YL      H DLA  N+L+      K+ADFGLA+   
Sbjct: 126 VPEEQLSFKDLVSCAYQVARGMEYLESRRCIHRDLAARNVLVTEDNVMKIADFGLARGVH 185

Query: 229 DVNTHVST 236
           D++ +  T
Sbjct: 186 DIDYYKKT 193

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Unlike other FGFRs, there is only one splice form of FGFR4. It binds FGF1, FGF2, FGF6, FGF19, and FGF23. FGF19 is a selective ligand for FGFR4. Although disruption of FGFR4 in mice causes no obvious phenotype, in vivo inhibition of FGFR4 in cultured skeletal muscle cells resulted in an arrest of muscle progenitor differentiation. FGF6 and FGFR4 are uniquely expressed in myofibers and satellite cells. FGF6/FGFR4 signaling appears to play a key role in the regulation of muscle regeneration. A polymorphism in FGFR4 is found in head and neck squamous cell carcinoma. Length = 314

>gnl|CDD|132971 cd06640, STKc_MST4, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

 Score = 38.9 bits (90), Expect = 0.001
 Identities = 37/164 (22%), Positives = 68/164 (41%), Gaps = 25/164 (15%)

Query: 101 FSDANLLRQDGFGYVHRGV--------------LPNGKEGEREFQAEVEIISRVHHKHLV 146
           F+    + +  FG V +G+              L   ++   + Q E+ ++S+    ++ 
Sbjct: 6   FTKLERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVT 65

Query: 147 SLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHDD-- 204
              G Y  G++  ++ E++   + +  L           T +K  L   KGL YLH +  
Sbjct: 66  KYYGSYLKGTKLWIIMEYLGGGSALDLLRAGPFDEFQIATMLKEIL---KGLDYLHSEKK 122

Query: 205 ------LANILLDFKFEAKVADFGLAKIASDVNTHVSTRVMGTF 242
                  AN+LL  + + K+ADFG+A   +D     +T V   F
Sbjct: 123 IHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFVGTPF 166

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by interacting with the Golgi matrix protein GM130 and may play a role in cell migration. Length = 277

>gnl|CDD|173720 cd05631, STKc_GRK4, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

 Score = 38.8 bits (90), Expect = 0.001
 Identities = 33/109 (30%), Positives = 47/109 (43%), Gaps = 8/109 (7%)

Query: 124 KEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMD 183
           ++GE     E  I+ +V+ + +VSL   Y       LV   +    L FH++  G P  D
Sbjct: 41  RKGEAMALNEKRILEKVNSRFVVSLAYAYETKDALCLVLTIMNGGDLKFHIYNMGNPGFD 100

Query: 184 WPTRIKIALGSAKGLAYLHD------DLA--NILLDFKFEAKVADFGLA 224
               I  A     GL  L        DL   NILLD +   +++D GLA
Sbjct: 101 EQRAIFYAAELCCGLEDLQRERIVYRDLKPENILLDDRGHIRISDLGLA 149

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found in the testis, but is also present in the cerebellum and kidney. It is expressed as multiple splice variants with different domain architectures. It is post-translationally palmitoylated and localized in the membrane. GRK4 polymorphisms are associated with hypertension and salt sensitivity, as they cause hyperphosphorylation, desensitization, and internalization of the dopamine 1 (D1) receptor while increasing the expression of the angiotensin II type 1 receptor. GRK4 plays a crucial role in the D1 receptor regulation of sodium excretion and blood pressure. Length = 285

>gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

 Score = 38.7 bits (91), Expect = 0.001
 Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 15/118 (12%)

Query: 133 EVEIISRV-HHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIK-I 190
           EV+ + ++  H ++V L   +    +   V+E++  N  ++ L    +      + I+ I
Sbjct: 47  EVKSLRKLNEHPNIVKLKEVFRENDELYFVFEYMEGN--LYQLMKDRKGKPFSESVIRSI 104

Query: 191 ALGSAKGLAYLHD------DLA--NILLDFKFEAKVADFGLAK-IAS--DVNTHVSTR 237
                +GLA++H       DL   N+L+      K+ADFGLA+ I S      +VSTR
Sbjct: 105 IYQILQGLAHIHKHGFFHRDLKPENLLVSGPEVVKIADFGLAREIRSRPPYTDYVSTR 162

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertility. It functions as a coactivator of the androgen receptor in prostate cells. MRK, also called Intestinal Cell Kinase (ICK), is expressed ubiquitously, with highest expression in the ovary and uterus. A missense mutation in MRK causes endocrine-cerebro-osteodysplasia (ECO), suggesting that this protein plays an important role in the development of many organs. MAK and MRK may be involved in regulating cell cycle and cell fate. Ime2p is a meiosis-specific kinase that is important during meiotic initiation and during the later stages of meiosis. Mde3 functions downstream of the transcription factor Mei-4 which is essential for meiotic prophase I. Length = 283

>gnl|CDD|133192 cd05061, PTKc_InsR, Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

 Score = 38.8 bits (90), Expect = 0.001
 Identities = 41/159 (25%), Positives = 64/159 (40%), Gaps = 38/159 (23%)

Query: 105 NLLR---QDGFGYVHRGVLPNGKEGER-------------------EFQAEVEIISRVHH 142
            LLR   Q  FG V+ G   +  +GE                    EF  E  ++     
Sbjct: 9   TLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTC 68

Query: 143 KHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHL--------HGKGQPTMDWPTRIKIALGS 194
            H+V L+G  + G   ++V E + +  L  +L        +  G+P       I++A   
Sbjct: 69  HHVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEI 128

Query: 195 AKGLAYL------HDDLA--NILLDFKFEAKVADFGLAK 225
           A G+AYL      H DLA  N ++   F  K+ DFG+ +
Sbjct: 129 ADGMAYLNAKKFVHRDLAARNCMVAHDFTVKIGDFGMTR 167

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein metabolism, ion and amino acid transport, cell cycle and proliferation, cell differentiation, gene transcription, and nitric oxide synthesis. Insulin resistance, caused by abnormalities in InsR signaling, has been described in diabetes, hypertension, cardiovascular disease, metabolic syndrome, heart failure, and female infertility. Length = 288

>gnl|CDD|173661 cd05570, STKc_PKC, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 10/92 (10%)

Query: 142 HKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL 201
           H  L  L   +    +   V E+V    L+FH+   G+   D P     A     GL +L
Sbjct: 55  HPFLTQLHSCFQTKDRLFFVMEYVNGGDLMFHIQRSGR--FDEPRARFYAAEIVLGLQFL 112

Query: 202 HD--------DLANILLDFKFEAKVADFGLAK 225
           H+         L N+LLD +   K+ADFG+ K
Sbjct: 113 HERGIIYRDLKLDNVLLDSEGHIKIADFGMCK 144

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only require PS. PKCs phosphorylate and modify the activities of a wide variety of cellular proteins including receptors, enzymes, cytoskeletal proteins, transcription factors, and other kinases. They play a central role in signal transduction pathways that regulate cell migration and polarity, proliferation, differentiation, and apoptosis. Also included in this subfamily are the PKC-like proteins, called PKNs. Length = 318

>gnl|CDD|173630 cd05044, PTKc_c-ros, Catalytic domain of the Protein Tyrosine Kinase, C-ros

 Score = 38.7 bits (90), Expect = 0.002
 Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 18/115 (15%)

Query: 129 EFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGK-----GQPTMD 183
           EF  E  ++S  +H ++V L+G       + ++ E +    L+ +L        G P + 
Sbjct: 45  EFLKEAHLMSNFNHPNIVKLLGVCLLNEPQYIIMELMEGGDLLSYLRDARVERFGPPLLT 104

Query: 184 WPTRIKIALGSAKGLAYL------HDDLA--NILLDFKFEA-----KVADFGLAK 225
               + I L  AKG  YL      H DLA  N L+  K        K+ DFGLA+
Sbjct: 105 LKELLDICLDVAKGCVYLEQMHFIHRDLAARNCLVSEKGYDADRVVKIGDFGLAR 159

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male mice bearing inactive mutations of c-ros lack the initial segment of the epididymis and are infertile. The Drosophila protein, Sevenless, is required for the specification of the R7 photoreceptor cell during eye development. Length = 269

>gnl|CDD|173721 cd05632, STKc_GRK5, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

 Score = 38.4 bits (89), Expect = 0.002
 Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 8/109 (7%)

Query: 124 KEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMD 183
           ++GE     E +I+ +V+ + +V+L   Y       LV   +    L FH++  G P  +
Sbjct: 41  RKGESMALNEKQILEKVNSQFVVNLAYAYETKDALCLVLTIMNGGDLKFHIYNMGNPGFE 100

Query: 184 WPTRIKIALGSAKGLAYLHD------DLA--NILLDFKFEAKVADFGLA 224
               +  A     GL  LH       DL   NILLD     +++D GLA
Sbjct: 101 EERALFYAAEILCGLEDLHRENTVYRDLKPENILLDDYGHIRISDLGLA 149

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with the membrane though an N-terminal PIP2 binding domain and also binds phospholipids via its C-terminus. GRK5 deficiency is associated with early Alzheimer's disease in humans and mouse models. GRK5 also plays a crucial role in the pathogenesis of sporadic Parkinson's disease. It participates in the regulation and desensitization of PDGFRbeta, a receptor tyrosine kinase involved in a variety of downstream cellular effects including cell growth, chemotaxis, apoptosis, and angiogenesis. GRK5 also regulates Toll-like receptor 4, which is involved in innate and adaptive immunity. Length = 285

>gnl|CDD|173742 cd07845, STKc_CDK10, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

 Score = 38.5 bits (90), Expect = 0.002
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 8/51 (15%)

Query: 196 KGLAYLHDD--------LANILLDFKFEAKVADFGLAKIASDVNTHVSTRV 238
           +GL YLH++        ++N+LL  K   K+ADFGLA+        ++ +V
Sbjct: 119 RGLQYLHENFIIHRDLKVSNLLLTDKGCLKIADFGLARTYGLPAKPMTPKV 169

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing increases the transcription of c-RAF and the activation of the p42/p44 MAPK pathway, which leads to antiestrogen resistance. Patients who express low levels of CDK10 relapse early on tamoxifen. Length = 309

>gnl|CDD|173725 cd06608, STKc_myosinIII_like, Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

 Score = 38.0 bits (89), Expect = 0.002
 Identities = 33/143 (23%), Positives = 58/143 (40%), Gaps = 31/143 (21%)

Query: 112 FGYVHRG------------VLPNGKEGEREFQAEVEIISRV-HHKHLVSLVGYY------ 152
           +G V++             ++   ++ E E + E  I+ +  +H ++ +  G +      
Sbjct: 19  YGKVYKARHKKTGQLVAIKIMDIIEDEEEEIKEEYNILRKYSNHPNIATFYGAFIKKNPP 78

Query: 153 TAGSQRMLVYEFVLNNT---LVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHDDL---- 205
               Q  LV E     +   LV  L  KG+  +       I   + +GLAYLH++     
Sbjct: 79  GNDDQLWLVMELCGGGSVTDLVKGLRKKGKR-LKEEWIAYILRETLRGLAYLHENKVIHR 137

Query: 206 ----ANILLDFKFEAKVADFGLA 224
                NILL    E K+ DFG++
Sbjct: 138 DIKGQNILLTKNAEVKLVDFGVS 160

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin III may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. It may also function as a cargo carrier during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. The Drosophila class III myosin, called NinaC (Neither inactivation nor afterpotential protein C), is critical in normal adaptation and termination of photoresponse. Vertebrates contain two isoforms of class III myosin, IIIA and IIIB. This subfamily also includes mammalian NIK-like embryo-specific kinase (NESK), Traf2- and Nck-interacting kinase (TNIK), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6). MAP4Ks are involved in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Length = 275

>gnl|CDD|173696 cd05605, STKc_GRK4_like, Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

 Score = 38.3 bits (89), Expect = 0.002
 Identities = 33/109 (30%), Positives = 48/109 (44%), Gaps = 8/109 (7%)

Query: 124 KEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMD 183
           ++GE     E +I+ +V+ + +VSL   Y       LV   +    L FH++  G P  D
Sbjct: 41  RKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTLMNGGDLKFHIYNMGNPGFD 100

Query: 184 WPTRIKIALGSAKGLAYLHD------DLA--NILLDFKFEAKVADFGLA 224
               +  A     GL  LH       DL   NILLD     +++D GLA
Sbjct: 101 EERAVFYAAEITCGLEDLHRERIVYRDLKPENILLDDYGHIRISDLGLA 149

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5, GRK6, and similar GRKs. GRKs in this group contain an N-terminal RGS homology (RH) domain and a catalytic domain, but lack a G protein betagamma-subunit binding domain. They are localized to the plasma membrane through post-translational lipid modification or direct binding to PIP2. Length = 285

>gnl|CDD|173652 cd05100, PTKc_FGFR3, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

 Score = 38.1 bits (88), Expect = 0.002
 Identities = 33/128 (25%), Positives = 60/128 (46%), Gaps = 23/128 (17%)

Query: 132 AEVEIISRV-HHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDW------ 184
           +E+E++  +  HK++++L+G  T      ++ E+     L  +L  +  P MD+      
Sbjct: 66  SEMEMMKMIGKHKNIINLLGACTQDGPLYVLVEYASKGNLREYLRARRPPGMDYSFDTCK 125

Query: 185 -PTR-------IKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAKIAS 228
            P         +  A   A+G+ YL      H DLA  N+L+      K+ADFGLA+   
Sbjct: 126 LPEEQLTFKDLVSCAYQVARGMEYLASQKCIHRDLAARNVLVTEDNVMKIADFGLARDVH 185

Query: 229 DVNTHVST 236
           +++ +  T
Sbjct: 186 NIDYYKKT 193

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Many FGFR3 splice variants have been reported with the IIIb and IIIc isoforms being the predominant forms. FGFR3 IIIc is the isoform expressed in chondrocytes, the cells affected in dwarfism, while IIIb is expressed in epithelial cells. FGFR3 ligands include FGF1, FGF2, FGF4, FGF8, FGF9, and FGF23. It is a negative regulator of long bone growth. In the cochlear duct and in the lens, FGFR3 is involved in differentiation while it appears to have a role in cell proliferation in epithelial cells. Germline mutations in FGFR3 are associated with skeletal disorders including several forms of dwarfism. Some missense mutations are associated with multiple myeloma and carcinomas of the bladder and cervix. Overexpression of FGFR3 is found in thyroid carcinoma. Length = 334

>gnl|CDD|133195 cd05064, PTKc_EphR_A10, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

 Score = 38.0 bits (88), Expect = 0.003
 Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 7/103 (6%)

Query: 127 EREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTL-VFHLHGKGQPT---- 181
            R F AE   + +  H ++V L G  T G+  M+V E++ N  L  F    +GQ      
Sbjct: 50  RRGFLAEALTLGQFDHSNIVRLEGVITRGNTMMIVTEYMSNGALDSFLRKHEGQLVAGQL 109

Query: 182 MDWPTRIKIALGSAKGLAYLHDDLA--NILLDFKFEAKVADFG 222
           M     +   +     + Y+H  LA   +L++     K++ F 
Sbjct: 110 MGMLPGLASGMKYLSEMGYVHKGLAAHKVLVNSDLVCKISGFR 152

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). EphA10, which contains an inactive tyr kinase domain, may function to attenuate signals of co-clustered active receptors. EphA10 is mainly expressed in the testis. Ephrin/EphR interaction results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

 Score = 37.7 bits (88), Expect = 0.003
 Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 12/120 (10%)

Query: 133 EVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPT--MDWPTRIKI 190
           EV+ +S+ +H ++V     +  G +  LV  + L+   +  +     P   +D      +
Sbjct: 49  EVQAMSQCNHPNVVKYYTSFVVGDELWLVMPY-LSGGSLLDIMKSSYPRGGLDEAIIATV 107

Query: 191 ALGSAKGLAYLHD------DL--ANILLDFKFEAKVADFGLAKIASDVNTHVSTRVMGTF 242
                KGL YLH       D+   NILL      K+ADFG++   +D     + +V  TF
Sbjct: 108 LKEVLKGLEYLHSNGQIHRDIKAGNILLGEDGSVKIADFGVSASLAD-GGDRTRKVRKTF 166

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 and SPAK contain a conserved C-terminal (CCT) domain, which recognizes a unique motif ([RK]FX[VI]) present in their activating kinases (WNK1/WNK4) and their substrates. Length = 267

>gnl|CDD|173698 cd05607, STKc_GRK7, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

 Score = 38.0 bits (88), Expect = 0.003
 Identities = 27/109 (24%), Positives = 52/109 (47%), Gaps = 8/109 (7%)

Query: 124 KEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMD 183
           K GE+    E EI+ +V+   +V+L   + + +   LV   +    L +H++  G+  ++
Sbjct: 34  KSGEKMALLEKEILEKVNSPFIVNLAYAFESKTHLCLVMSLMNGGDLKYHIYNVGERGLE 93

Query: 184 WPTRIKIALGSAKGLAYLHD------DLA--NILLDFKFEAKVADFGLA 224
               I  +     G+ +LH       D+   N+LLD +   +++D GLA
Sbjct: 94  MERVIHYSAQITCGILHLHSMDIVYRDMKPENVLLDDQGNCRLSDLGLA 142

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual group of GRKs. It is primarily found in the retina and plays a role in the regulation of opsin light receptors. GRK7 is located in retinal cone outer segments and plays an important role in regulating photoresponse of the cones. Length = 277

>gnl|CDD|133232 cd05101, PTKc_FGFR2, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

 Score = 37.7 bits (87), Expect = 0.003
 Identities = 31/128 (24%), Positives = 60/128 (46%), Gaps = 23/128 (17%)

Query: 132 AEVEIISRV-HHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWP---TR 187
           +E+E++  +  HK++++L+G  T      ++ E+     L  +L  +  P M++     R
Sbjct: 69  SEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDIAR 128

Query: 188 -----------IKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAKIAS 228
                      +      A+G+ YL      H DLA  N+L+      K+ADFGLA+  +
Sbjct: 129 VPDEQMTFKDLVSCTYQVARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDVN 188

Query: 229 DVNTHVST 236
           +++ +  T
Sbjct: 189 NIDYYKKT 196

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. There are many splice variants of FGFR2 which show differential expression and binding to FGF ligands. Disruption of either FGFR2 or FGFR2b is lethal in mice, due to defects in the placenta or severe impairment of tissue development including lung, limb, and thyroid, respectively. Disruption of FGFR2c in mice results in defective bone and skull development. Genetic alterations of FGFR2 are associated with many human skeletal disorders including Apert syndrome, Crouzon syndrome, Jackson-Weiss syndrome, and Pfeiffer syndrome. Length = 304

>gnl|CDD|133220 cd05089, PTKc_Tie1, Catalytic domain of the Protein Tyrosine Kinase, Tie1

 Score = 37.7 bits (87), Expect = 0.004
 Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 25/122 (20%)

Query: 128 REFQAEVEIISRV-HHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHL------------ 174
           R+F  E+E++ ++ HH ++++L+G         +  E+     L+  L            
Sbjct: 47  RDFAGELEVLCKLGHHPNIINLLGACENRGYLYIAIEYAPYGNLLDFLRKSRVLETDPAF 106

Query: 175 ---HGKGQPTMDWPTRIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGL 223
              HG    T+     ++ A   A G+ YL      H DLA  N+L+     +K+ADFGL
Sbjct: 107 AKEHGTAS-TLTSQQLLQFASDVATGMQYLSEKQFIHRDLAARNVLVGENLASKIADFGL 165

Query: 224 AK 225
           ++
Sbjct: 166 SR 167

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations. In vivo studies of Tie1 show that it is critical in vascular development. Length = 297

>gnl|CDD|133229 cd05098, PTKc_FGFR1, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

 Score = 37.3 bits (86), Expect = 0.004
 Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 23/117 (19%)

Query: 132 AEVEIISRV-HHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDW---PTR 187
           +E+E++  +  HK++++L+G  T      ++ E+     L  +L  +  P M++   PT+
Sbjct: 72  SEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQ 131

Query: 188 IKIALGS-----------AKGLAYL------HDDLA--NILLDFKFEAKVADFGLAK 225
           +     S           A+G+ YL      H DLA  N+L+      K+ADFGLA+
Sbjct: 132 VPEEQLSFKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLAR 188

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Alternative splicing of FGFR1 transcripts produces a variety of isoforms, which are differentially expressed in cells. FGFR1 binds the ligands, FGF1 and FGF2, with high affinity and has also been reported to bind FGF4, FGF6, and FGF9. FGFR1 signaling is critical in the control of cell migration during embryo development. It promotes cell proliferation in fibroblasts. Nuclear FGFR1 plays a role in the regulation of transcription. Mutations, insertions or deletions of FGFR1 have been identified in patients with Kallman's syndrome (KS), an inherited disorder characterized by hypogonadotropic hypogonadism and loss of olfaction. Aberrant FGFR1 expression has been found in some human cancers including 8P11 myeloproliferative syndrome (EMS), breast cancer, and pancreatic adenocarcinoma. Length = 307

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	243
KOG1187	361	consensus Serine/threonine protein kinase [Signal	99.98
KOG0595	429	consensus Serine/threonine-protein kinase involved	99.98
KOG0575	592	consensus Polo-like serine/threonine protein kinas	99.97
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	99.97
KOG0598	357	consensus Ribosomal protein S6 kinase and related	99.97
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	99.96
KOG0581	364	consensus Mitogen-activated protein kinase kinase	99.96
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	99.96
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	99.96
KOG0611	668	consensus Predicted serine/threonine protein kinas	99.96
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	99.95
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	99.95
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	99.95
KOG0192	362	consensus Tyrosine kinase specific for activated (	99.95
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	99.95
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	99.94
PLN00034	353	mitogen-activated protein kinase kinase; Provision	99.94
KOG0694	694	consensus Serine/threonine protein kinase [Signal	99.94
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	99.94
KOG0583	370	consensus Serine/threonine protein kinase [Signal	99.94
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	99.94
KOG0661	538	consensus MAPK related serine/threonine protein ki	99.93
KOG0589	426	consensus Serine/threonine protein kinase [General	99.93
KOG0198	313	consensus MEKK and related serine/threonine protei	99.93
KOG0605	550	consensus NDR and related serine/threonine kinases	99.93
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	99.93
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	99.92
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	99.92
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	99.92
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	99.92
KOG0578	550	consensus p21-activated serine/threonine protein k	99.92
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	99.92
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	99.92
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	99.92
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	99.92
KOG0610	459	consensus Putative serine/threonine protein kinase	99.92
PTZ00263	329	protein kinase A catalytic subunit; Provisional	99.92
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	99.92
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	99.92
PHA03211	461	serine/threonine kinase US3; Provisional	99.92
KOG0582	516	consensus Ste20-like serine/threonine protein kina	99.91
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	99.91
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	99.91
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	99.91
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	99.91
KOG0690	516	consensus Serine/threonine protein kinase [Signal	99.91
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	99.91
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	99.91
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	99.91
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	99.91
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	99.91
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	99.91
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	99.91
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	99.91
PHA03212	391	serine/threonine kinase US3; Provisional	99.91
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	99.91
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	99.91
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	99.91
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	99.91
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	99.91
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	99.91
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	99.91
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	99.91
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	99.91
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	99.91
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	99.91
PHA03210	501	serine/threonine kinase US3; Provisional	99.9
KOG0584	632	consensus Serine/threonine protein kinase [General	99.9
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	99.9
KOG0586	596	consensus Serine/threonine protein kinase [General	99.9
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	99.9
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	99.9
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	99.9
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	99.9
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	99.9
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	99.9
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	99.9
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	99.9
PTZ00267	478	NIMA-related protein kinase; Provisional	99.9
KOG0577	948	consensus Serine/threonine protein kinase [Signal	99.9
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	99.9
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	99.9
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	99.9
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	99.9
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	99.9
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	99.9
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	99.89
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	99.89
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	99.89
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	99.89
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	99.89
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	99.89
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	99.89
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	99.89
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	99.89
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	99.89
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	99.89
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	99.89
KOG1989	738	consensus ARK protein kinase family [Signal transd	99.89
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	99.89
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	99.89
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	99.89
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	99.89
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	99.89
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	99.89
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	99.89
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	99.89
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	99.88
KOG0201	467	consensus Serine/threonine protein kinase [Signal	99.88
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	99.88
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	99.88
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	99.88
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	99.88
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	99.88
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	99.88
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	99.88
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	99.88
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	99.88
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	99.88
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	99.88
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	99.88
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	99.88
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	99.88
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	99.88
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	99.88
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	99.88
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	99.88
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	99.88
PHA03209	357	serine/threonine kinase US3; Provisional	99.88
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	99.88
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	99.88
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	99.88
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	99.88
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	99.88
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	99.87
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	99.87
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	99.87
PHA03207	392	serine/threonine kinase US3; Provisional	99.87
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	99.87
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	99.87
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	99.87
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	99.87
KOG4721	904	consensus Serine/threonine protein kinase, contain	99.87
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	99.87
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	99.87
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	99.87
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	99.87
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	99.87
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	99.87
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	99.87
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	99.87
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	99.87
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	99.87
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	99.87
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	99.87
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	99.87
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	99.87
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	99.87
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	99.87
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	99.87
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	99.87
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	99.87
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	99.87
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	99.87
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	99.87
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	99.86
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	99.86
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	99.86
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	99.86
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	99.86
PTZ00283	496	serine/threonine protein kinase; Provisional	99.86
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	99.86
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	99.86
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	99.86
PHA02988	283	hypothetical protein; Provisional	99.86
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	99.86
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	99.86
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	99.86
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	99.86
PTZ00284	467	protein kinase; Provisional	99.86
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	99.86
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	99.86
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	99.86
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	99.86
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	99.86
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	99.86
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	99.86
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	99.86
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	99.86
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	99.86
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	99.86
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	99.86
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	99.86
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	99.86
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	99.86
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	99.86
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	99.86
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	99.86
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	99.86
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	99.86
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	99.86
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	99.86
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	99.86
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	99.86
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	99.86
PTZ00266	1021	NIMA-related protein kinase; Provisional	99.86
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	99.86
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	99.85
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	99.85
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	99.85
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	99.85
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	99.85
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	99.85
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	99.85
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	99.85
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	99.85
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	99.85
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	99.85
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	99.85
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	99.85
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	99.85
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	99.85
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	99.85
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	99.85
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	99.85
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	99.85
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	99.85
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	99.85
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	99.85
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	99.85
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	99.85
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	99.85
PTZ00036	440	glycogen synthase kinase; Provisional	99.85
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	99.85
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	99.85
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	99.85
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	99.85
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	99.85
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	99.85
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	99.85
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	99.85
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	99.85
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	99.85
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	99.84
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	99.84
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	99.84
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	99.84
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	99.84
KOG0596	677	consensus Dual specificity; serine/threonine and t	99.84
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	99.84
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	99.84
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	99.84
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	99.84
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	99.84
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	99.84
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	99.84
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	99.84
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	99.84
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	99.84
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	99.84
KOG1152	772	consensus Signal transduction serine/threonine kin	99.84
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	99.84
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	99.84
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	99.84
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	99.84
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	99.84
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	99.84
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	99.84
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	99.84
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	99.84
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	99.84
KOG4717	864	consensus Serine/threonine protein kinase [Signal	99.84
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	99.84
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	99.84
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	99.84
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	99.84
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	99.84
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.84
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	99.84
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	99.84
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	99.84
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	99.84
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	99.84
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	99.84
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	99.84
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	99.84
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	99.84
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	99.83
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	99.83
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	99.83
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	99.83
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	99.83
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	99.83
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	99.83
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	99.83
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	99.83
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	99.83
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	99.83
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	99.83
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	99.83
PLN00009	294	cyclin-dependent kinase A; Provisional	99.83
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	99.83
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	99.83
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	99.83
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	99.83
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	99.83
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	99.83
PRK09188	365	serine/threonine protein kinase; Provisional	99.83
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	99.83
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	99.83
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	99.82
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	99.82
KOG0695	593	consensus Serine/threonine protein kinase [Signal	99.82
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	99.82
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	99.82
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	99.82
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	99.82
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	99.82
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	99.82
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	99.82
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	99.82
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	99.82
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	99.82
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	99.82
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	99.82
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	99.82
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	99.82
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	99.82
KOG3653	534	consensus Transforming growth factor beta/activin	99.82
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	99.82
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	99.82
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	99.82
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	99.82
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	99.81
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	99.81
KOG2052	513	consensus Activin A type IB receptor, serine/threo	99.81
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	99.81
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	99.81
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	99.81
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	99.81
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	99.81
KOG0576	829	consensus Mitogen-activated protein kinase kinase	99.81
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	99.81
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	99.81
KOG0607	463	consensus MAP kinase-interacting kinase and relate	99.81
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	99.81
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	99.8
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	99.8
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	99.8
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	99.8
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	99.8
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	99.8
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	99.8
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	99.8
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	99.8
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	99.8
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	99.8
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	99.8
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	99.79
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	99.79
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	99.79
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	99.79
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	99.79
PTZ00024	335	cyclin-dependent protein kinase; Provisional	99.79
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	99.79
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	99.78
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	99.78
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	99.78
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	99.78
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	99.78
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	99.78
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	99.78
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	99.77
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	99.77
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	99.77
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	99.77
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	99.77
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	99.77
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	99.77
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	99.76
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	99.76
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	99.76
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	99.76
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	99.76
PHA02882	294	putative serine/threonine kinase; Provisional	99.76
PLN03224	507	probable serine/threonine protein kinase; Provisio	99.76
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	99.76
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	99.75
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	99.75
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.74
PRK10345	210	hypothetical protein; Provisional	99.73
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	99.72
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.72
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	99.71
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	99.71
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	99.71
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	99.7
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	99.7
PRK09605	535	bifunctional UGMP family protein/serine/threonine	99.67
KOG1027	903	consensus Serine/threonine protein kinase and endo	99.66
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.66
PRK14879	211	serine/threonine protein kinase; Provisional	99.66
KOG1290	590	consensus Serine/threonine protein kinase [Signal	99.64
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	99.64
PRK12274	218	serine/threonine protein kinase; Provisional	99.63
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.63
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	99.62
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	99.61
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	99.59
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	99.57
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	99.55
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	99.55
smart00090	237	RIO RIO-like kinase.	99.54
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	99.53
KOG1167	418	consensus Serine/threonine protein kinase of the C	99.51
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	99.5
COG0515	384	SPS1 Serine/threonine protein kinase [General func	99.47
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	99.42
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	99.38
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	99.37
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	99.31
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.21
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	99.2
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	99.19
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.15
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	99.12
KOG1023	484	consensus Natriuretic peptide receptor, guanylate	99.1
KOG4158	598	consensus BRPK/PTEN-induced protein kinase [Signal	99.1
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.02
PLN00181	793	protein SPA1-RELATED; Provisional	99.02
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	98.99
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	98.82
KOG3087	229	consensus Serine/threonine protein kinase [General	98.81
KOG1243	690	consensus Protein kinase [General function predict	98.79
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	98.78
COG0478	304	RIO-like serine/threonine protein kinase fused to	98.71
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	98.71
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	98.65
KOG0590	601	consensus Checkpoint kinase and related serine/thr	98.57
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	98.49
COG0661	517	AarF Predicted unusual protein kinase [General fun	98.44
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	98.38
PF01163	188	RIO1: RIO1 family; InterPro: IPR018934 Protein pho	98.35
COG2112	201	Predicted Ser/Thr protein kinase [Signal transduct	98.34
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.28
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	98.24
KOG3741	655	consensus Poly(A) ribonuclease subunit [RNA proces	98.17
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	98.14
TIGR02172	226	Fb_sc_TIGR02172 Fibrobacter succinogenes paralogou	98.11
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	98.06
KOG0606	1205	consensus Microtubule-associated serine/threonine	97.99
KOG1266	458	consensus Protein kinase [Signal transduction mech	97.97
PF06176	229	WaaY: Lipopolysaccharide core biosynthesis protein	97.95
PF06293	206	Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family;	97.94
PF12260	188	PIP49_C: Protein-kinase domain of FAM69; InterPro:	97.93
PRK09902	216	hypothetical protein; Provisional	97.83
KOG1235	538	consensus Predicted unusual protein kinase [Genera	97.82
COG1718	268	RIO1 Serine/threonine protein kinase involved in c	97.79
KOG0576	829	consensus Mitogen-activated protein kinase kinase	97.47
PF01636	239	APH: Phosphotransferase enzyme family This family	97.41
cd05150	244	APH Aminoglycoside 3'-phosphotransferase (APH). Th	97.26
PF10707	199	YrbL-PhoP_reg: PhoP regulatory network protein Yrb	97.14
KOG2268	465	consensus Serine/threonine protein kinase [Signal	97.1
PLN02876	822	acyl-CoA dehydrogenase	96.91
COG5072	488	ALK1 Serine/threonine kinase of the haspin family	96.87
PRK10593	297	hypothetical protein; Provisional	96.65
cd05155	235	APH_ChoK_like_1 Uncharacterized bacterial proteins	96.57
cd05153	296	HomoserineK_II Homoserine Kinase, type II. Homoser	95.91
PF13095	207	FTA2: Kinetochore Sim4 complex subunit FTA2	95.89
TIGR00938	307	thrB_alt homoserine kinase, Neisseria type. Homose	95.85
KOG0606	1205	consensus Microtubule-associated serine/threonine	95.1
TIGR02721	256	ycfN_thiK thiamine kinase. Members of this family	94.77
PRK05231	319	homoserine kinase; Provisional	94.68
KOG2270	520	consensus Serine/threonine protein kinase involved	94.35
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	93.96
PF07387	308	Seadorna_VP7: Seadornavirus VP7; InterPro: IPR0099	93.33
COG3173	321	Predicted aminoglycoside phosphotransferase [Gener	93.07
PLN02236	344	choline kinase	92.51
PHA00451	362	protein kinase	92.51
cd00891	352	PI3Kc Phosphoinositide 3-kinase (PI3K), catalytic	91.72
PF01633	211	Choline_kinase: Choline/ethanolamine kinase; Inter	91.56
cd05165	366	PI3Kc_I Phosphoinositide 3-kinase (PI3K), class I,	91.1
cd05166	353	PI3Kc_II Phosphoinositide 3-kinase (PI3K), class I	91.06
cd05152	276	MPH2' Macrolide 2'-Phosphotransferase (MPH2'). MPH	90.87
cd05177	354	PI3Kc_C2_gamma Phosphoinositide 3-kinase (PI3K), c	90.37
cd05176	353	PI3Kc_C2_alpha Phosphoinositide 3-kinase (PI3K), c	90.12
PRK10271	188	thiK thiamine kinase; Provisional	89.76
cd05167	311	PI4Kc_III_alpha Phosphoinositide 4-kinase (PI4K),	88.94
cd05156	302	ChoK_euk Choline Kinase (ChoK) in eukaryotes. The	88.8
COG4248	637	Uncharacterized protein with protein kinase and he	88.61
PRK09550	401	mtnK methylthioribose kinase; Reviewed	88.33
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	87.8
KOG4720	391	consensus Ethanolamine kinase [Lipid transport and	87.8
cd00892	237	PIKKc_ATR ATR (Ataxia telangiectasia and Rad3-rela	86.68
cd05157	235	ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes.	86.08
cd05164	222	PIKKc Phosphoinositide 3-kinase-related protein ki	85.85
cd00895	354	PI3Kc_C2_beta Phosphoinositide 3-kinase (PI3K), cl	85.72
cd05175	366	PI3Kc_IA_alpha Phosphoinositide 3-kinase (PI3K), c	85.23
PF10140	359	YukC: WXG100 protein secretion system (Wss), prote	85.18
KOG3021	313	consensus Predicted kinase [General function predi	84.84

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.98  E-value=1.8e-31  Score=228.54  Aligned_cols=158  Identities=53%  Similarity=0.914  Sum_probs=135.5

Q ss_pred             CCccccHHHHHHHhCCCCccceeeecCceEEEEEEecCCch-----------h-HHHHHHHHHHHHhcCCCccceEEEEE
Q 039406           85 SKSTFTYEELARATDGFSDANLLRQDGFGYVHRGVLPNGKE-----------G-EREFQAEVEIISRVHHKHLVSLVGYY  152 (243)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~-----------~-~~~~~~E~~~l~~l~hp~iv~~~~~~  152 (243)
                      ....|+++++..+|++|...++||+|+||.||+|.+.++..           . .++|.+|+++|.+++|+|+|+|+|||
T Consensus        61 ~~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~~~~~vAVK~~~~~~~~~~~eF~~Ei~~ls~l~H~Nlv~LlGyC  140 (361)
T KOG1187|consen   61 PLRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLSDGTVVAVKRLSSNSGQGEREFLNEVEILSRLRHPNLVKLLGYC  140 (361)
T ss_pred             CcceeeHHHHHHHHhCCchhcceecCCCeEEEEEEECCCCEEEEEEecCCCCcchhHHHHHHHHHhcCCCcCcccEEEEE
Confidence            45679999999999999999999999999999998777421           2 56799999999999999999999999


Q ss_pred             EeCC-eeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc-----------CCCcEEECCCCcEEEec
Q 039406          153 TAGS-QRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD-----------DLANILLDFKFEAKVAD  220 (243)
Q Consensus       153 ~~~~-~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~-----------~~~NiLl~~~~~~kl~D  220 (243)
                      .+.+ ..+||+|||.+|+|.++++......++|..++.|+.++++||.|||.           |++|||||+++++||+|
T Consensus       141 ~e~~~~~~LVYEym~nGsL~d~L~~~~~~~L~W~~R~kIa~g~A~gL~yLH~~~~~~iiHrDiKssNILLD~~~~aKlsD  220 (361)
T KOG1187|consen  141 LEGGEHRLLVYEYMPNGSLEDHLHGKKGEPLDWETRLKIALGAARGLAYLHEGCPPPIIHRDIKSSNILLDEDFNAKLSD  220 (361)
T ss_pred             ecCCceEEEEEEccCCCCHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHccCCCCCEecCCCCHHHeeECCCCCEEccC
Confidence            9988 59999999999999999987654268999999999999999999987           33799999999999999


Q ss_pred             cCCceecCC-CCceeeeccccccC
Q 039406          221 FGLAKIASD-VNTHVSTRVMGTFG  243 (243)
Q Consensus       221 FG~a~~~~~-~~~~~~~~~~GT~G  243 (243)
                      ||+|+.... .....+. ..||.|
T Consensus       221 FGLa~~~~~~~~~~~~~-~~gt~g  243 (361)
T KOG1187|consen  221 FGLAKLGPEGDTSVSTT-VMGTFG  243 (361)
T ss_pred             ccCcccCCccccceeee-cCCCCc
Confidence            999977665 3322211 177776

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.98  E-value=4.8e-32  Score=225.45  Aligned_cols=141  Identities=21%  Similarity=0.292  Sum_probs=123.3

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCc---------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEE
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGK---------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVY  162 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~---------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  162 (243)
                      .++|...+.||+|+|++||+|+++.+.               +..+.+..|+++|+.++|+|||++++++++++.+||||
T Consensus         9 ~~~y~~~~~iG~GsfavVykg~h~~~~~~VAIK~i~~~~l~~k~~e~L~~Ei~iLkel~H~nIV~l~d~~~~~~~i~lVM   88 (429)
T KOG0595|consen    9 VGDYELSREIGSGSFAVVYKGRHKKSGTEVAIKCIAKKKLNKKLVELLLSEIKILKELKHPNIVRLLDCIEDDDFIYLVM   88 (429)
T ss_pred             cccceehhhccCcceEEEEEeEeccCCceEEeeeehhhccCHHHHHHHHHHHHHHHhcCCcceeeEEEEEecCCeEEEEE
Confidence            378999999999999999999877653               24566789999999999999999999999999999999


Q ss_pred             eccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCC------CcEEEeccCCceecC
Q 039406          163 EFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFK------FEAKVADFGLAKIAS  228 (243)
Q Consensus       163 e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~------~~~kl~DFG~a~~~~  228 (243)
                      |||.||+|.++|+.++  .+++..++.++.|++.||++||.        ||+||||+..      -.+||+|||+|+.+.
T Consensus        89 EyC~gGDLs~yi~~~~--~l~e~t~r~Fm~QLA~alq~L~~~~IiHRDLKPQNiLLs~~~~~~~~~~LKIADFGfAR~L~  166 (429)
T KOG0595|consen   89 EYCNGGDLSDYIRRRG--RLPEATARHFMQQLASALQFLHENNIIHRDLKPQNILLSTTARNDTSPVLKIADFGFARFLQ  166 (429)
T ss_pred             EeCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCeeeccCCcceEEeccCCCCCCCceEEecccchhhhCC
Confidence            9999999999998776  49999999999999999999965        6799999764      458999999999997


Q ss_pred             CCCceeeecccccc
Q 039406          229 DVNTHVSTRVMGTF  242 (243)
Q Consensus       229 ~~~~~~~~~~~GT~  242 (243)
                      ...  ...++||||
T Consensus       167 ~~~--~a~tlcGSp  178 (429)
T KOG0595|consen  167 PGS--MAETLCGSP  178 (429)
T ss_pred             chh--HHHHhhCCc
Confidence            543  344578886

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.97  E-value=1.2e-30  Score=226.35  Aligned_cols=141  Identities=21%  Similarity=0.336  Sum_probs=125.2

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc----------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK----------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVY  162 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~----------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  162 (243)
                      ..|...++||+|+|+.||.++...+.                ...+++.+||+|.+.|+|||||++|++|++.+++|||+
T Consensus        18 ~~Y~~g~~LGkGgFA~cYe~~~~~tge~~A~KvVpk~~l~k~~~reKv~~EIeIHr~L~HpnIV~f~~~FEDs~nVYivL   97 (592)
T KOG0575|consen   18 KRYKRGRFLGKGGFARCYEARDLDTGEVVAVKVVPKKLLKKPKQREKVLNEIEIHRSLKHPNIVQFYHFFEDSNNVYIVL   97 (592)
T ss_pred             ceeeeeeeeccCcceEEEEEEEcCCCcEEEEEEeehHHhcCcchHHHHHHHHHHHHhcCCCcEEeeeeEeecCCceEEEE
Confidence            46999999999999999999874432                25678899999999999999999999999999999999


Q ss_pred             eccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCcee
Q 039406          163 EFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNTHV  234 (243)
Q Consensus       163 e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~~~  234 (243)
                      |+|..++|.+++++++  .+++.+++.++.||+.||.|||+        |+.|+||+++.+|||+|||||..+..+....
T Consensus        98 ELC~~~sL~el~Krrk--~ltEpEary~l~QIv~GlkYLH~~~IiHRDLKLGNlfL~~~~~VKIgDFGLAt~le~~~Erk  175 (592)
T KOG0575|consen   98 ELCHRGSLMELLKRRK--PLTEPEARYFLRQIVEGLKYLHSLGIIHRDLKLGNLFLNENMNVKIGDFGLATQLEYDGERK  175 (592)
T ss_pred             EecCCccHHHHHHhcC--CCCcHHHHHHHHHHHHHHHHHHhcCceecccchhheeecCcCcEEecccceeeeecCccccc
Confidence            9999999999997544  59999999999999999999976        4589999999999999999999998664433


Q ss_pred             eecccccc
Q 039406          235 STRVMGTF  242 (243)
Q Consensus       235 ~~~~~GT~  242 (243)
                      . ++||||
T Consensus       176 ~-TlCGTP  182 (592)
T KOG0575|consen  176 K-TLCGTP  182 (592)
T ss_pred             c-eecCCC
Confidence            3 489997

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=99.97  E-value=9.3e-31  Score=217.93  Aligned_cols=142  Identities=23%  Similarity=0.333  Sum_probs=122.3

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCch--------------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCe
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGKE--------------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQ  157 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~--------------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~  157 (243)
                      .+.|...+.||+|+||.|-+|..+++.+                    ....+.+|+++|++|+|||||+++++|+..+.
T Consensus       171 ~d~yii~~~LGsGafg~Vkla~e~~tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL~HP~IV~~~d~f~~~ds  250 (475)
T KOG0615|consen  171 NDYYIISKTLGSGAFGLVKLAYEKKTGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKLSHPNIVRIKDFFEVPDS  250 (475)
T ss_pred             cceeEeeeeecCCceeEEEEEEEcccCcEEEeeeeehhhcccccccccchhhhHHHHHHHHhcCCCCEEEEeeeeecCCc
Confidence            4668889999999999999998665532                    12335799999999999999999999999999


Q ss_pred             eEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCC---CcEEEeccCCcee
Q 039406          158 RMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFK---FEAKVADFGLAKI  226 (243)
Q Consensus       158 ~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~---~~~kl~DFG~a~~  226 (243)
                      .||||||++||+|.+.+..++  .+.+..-+.++.|++.|+.|||.        ||+|||+..+   ..+||+|||+|+.
T Consensus       251 ~YmVlE~v~GGeLfd~vv~nk--~l~ed~~K~~f~Qll~avkYLH~~GI~HRDiKPeNILl~~~~e~~llKItDFGlAK~  328 (475)
T KOG0615|consen  251 SYMVLEYVEGGELFDKVVANK--YLREDLGKLLFKQLLTAVKYLHSQGIIHRDIKPENILLSNDAEDCLLKITDFGLAKV  328 (475)
T ss_pred             eEEEEEEecCccHHHHHHhcc--ccccchhHHHHHHHHHHHHHHHHcCcccccCCcceEEeccCCcceEEEecccchhhc
Confidence            999999999999999998766  47888889999999999999976        6899999766   7899999999999


Q ss_pred             cCCCCceeeeccccccC
Q 039406          227 ASDVNTHVSTRVMGTFG  243 (243)
Q Consensus       227 ~~~~~~~~~~~~~GT~G  243 (243)
                      .++..  .+.++||||+
T Consensus       329 ~g~~s--fm~TlCGTps  343 (475)
T KOG0615|consen  329 SGEGS--FMKTLCGTPS  343 (475)
T ss_pred             cccce--ehhhhcCCcc
Confidence            98544  3556899985

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=99.97  E-value=5.2e-30  Score=211.15  Aligned_cols=141  Identities=26%  Similarity=0.358  Sum_probs=125.4

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVY  162 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  162 (243)
                      ++|+.+++||+|+||+||.++.+++++                ..+....|..+|.+++||+||+++..|.+...+|||+
T Consensus        25 ~dF~~lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K~~iv~~~e~~~~~~Er~IL~~v~hPFiv~l~ysFQt~~kLylVl  104 (357)
T KOG0598|consen   25 DDFEILKVIGKGSFGKVFQVRKKDTGKIYAMKVLKKKKIVEKKEVRHTKAERNILSKIKHPFIVKLIYSFQTEEKLYLVL  104 (357)
T ss_pred             hheeeeeeeeccCCceEEEEEEcccCceeehhhhhhhHhhhhhhHHHHHHHHHHHHhCCCCcEeeeEEecccCCeEEEEE
Confidence            789999999999999999998876643                3455778999999999999999999999999999999


Q ss_pred             eccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCcee
Q 039406          163 EFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNTHV  234 (243)
Q Consensus       163 e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~~~  234 (243)
                      ||+.||+|..+|.+.+  .+++..++.++.+|+.||.|||.        ||+|||||.+|+++|+|||||+....... .
T Consensus       105 d~~~GGeLf~hL~~eg--~F~E~~arfYlaEi~lAL~~LH~~gIiyRDlKPENILLd~~GHi~LtDFgL~k~~~~~~~-~  181 (357)
T KOG0598|consen  105 DYLNGGELFYHLQREG--RFSEDRARFYLAEIVLALGYLHSKGIIYRDLKPENILLDEQGHIKLTDFGLCKEDLKDGD-A  181 (357)
T ss_pred             eccCCccHHHHHHhcC--CcchhHHHHHHHHHHHHHHHHHhCCeeeccCCHHHeeecCCCcEEEeccccchhcccCCC-c
Confidence            9999999999998665  49999999999999999999997        67999999999999999999997655444 3


Q ss_pred             eecccccc
Q 039406          235 STRVMGTF  242 (243)
Q Consensus       235 ~~~~~GT~  242 (243)
                      +.++|||+
T Consensus       182 t~tfcGT~  189 (357)
T KOG0598|consen  182 TRTFCGTP  189 (357)
T ss_pred             cccccCCc
Confidence            44589996

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=99.96  E-value=1.3e-29  Score=203.24  Aligned_cols=138  Identities=28%  Similarity=0.347  Sum_probs=124.4

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVY  162 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  162 (243)
                      ++|+.++.||.|+||.|.+++.+.+..                ..+...+|..+|+.+.||+++++++.|.+.+++||||
T Consensus        44 ~dfe~~~tlGtGSFGrV~LVr~k~~g~yYAmKvL~k~~vVklKQveH~~nEk~vL~~v~~PFlv~l~~t~~d~~~lymvm  123 (355)
T KOG0616|consen   44 QDFERLKTLGTGSFGRVHLVREKHSGNYYAMKVLDKQKVVKLKQVEHTHNEKRVLKAVSHPFLVKLYGTFKDNSNLYMVM  123 (355)
T ss_pred             hhhhheeeeccCccceEEEEEEccCCceeehhhcCHHHHHHHHHHHHHhhHHHHHhhccCceeEEEEEeeccCCeEEEEE
Confidence            679999999999999999998876642                3455678999999999999999999999999999999


Q ss_pred             eccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCcee
Q 039406          163 EFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNTHV  234 (243)
Q Consensus       163 e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~~~  234 (243)
                      ||++||.|..++++.+  .+++..++.++.+|+.||+|||.        ||+|||||.+|.+||+|||+|+.+...    
T Consensus       124 eyv~GGElFS~Lrk~~--rF~e~~arFYAAeivlAleylH~~~iiYRDLKPENiLlD~~G~iKitDFGFAK~v~~r----  197 (355)
T KOG0616|consen  124 EYVPGGELFSYLRKSG--RFSEPHARFYAAEIVLALEYLHSLDIIYRDLKPENLLLDQNGHIKITDFGFAKRVSGR----  197 (355)
T ss_pred             eccCCccHHHHHHhcC--CCCchhHHHHHHHHHHHHHHHHhcCeeeccCChHHeeeccCCcEEEEeccceEEecCc----
Confidence            9999999999997665  49999999999999999999997        679999999999999999999998654    


Q ss_pred             eecccccc
Q 039406          235 STRVMGTF  242 (243)
Q Consensus       235 ~~~~~GT~  242 (243)
                      +.++||||
T Consensus       198 T~TlCGTP  205 (355)
T KOG0616|consen  198 TWTLCGTP  205 (355)
T ss_pred             EEEecCCc
Confidence            45689997

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=99.96  E-value=1.2e-28  Score=203.16  Aligned_cols=139  Identities=23%  Similarity=0.332  Sum_probs=121.7

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch--------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCe-eEEEEe
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE--------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQ-RMLVYE  163 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~--------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~-~~lv~e  163 (243)
                      ++++.++.||+|..|+||+++++.+.+              ..+++.+|+++|+.++||+||.+|+.|..++. ++|+||
T Consensus        79 ~dle~~~~lG~G~gG~V~kv~Hk~t~~i~AlK~I~~~~~~~~~~Qi~rEl~il~~~~spyIV~~ygaF~~~~~~isI~mE  158 (364)
T KOG0581|consen   79 SDLERLGVLGSGNGGTVYKVRHKPTGKIYALKVILLNIDPALQKQILRELEILRSCQSPYIVGFYGAFYSNGEEISICME  158 (364)
T ss_pred             HHhhhhhhcccCCCcEEEEEEEcCCCeEEEEEeecccCCHHHHHHHHHHHHHHhhCCCCCeeeEeEEEEeCCceEEeehh
Confidence            345556899999999999999887643              56788999999999999999999999999995 999999


Q ss_pred             ccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc---------CCCcEEECCCCcEEEeccCCceecCCCCcee
Q 039406          164 FVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD---------DLANILLDFKFEAKVADFGLAKIASDVNTHV  234 (243)
Q Consensus       164 ~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~---------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~~~  234 (243)
                      ||++|+|++++...+  .+++.....++.++++||.|||.         ||+|||++..|+|||||||.++.+.+.   .
T Consensus       159 YMDgGSLd~~~k~~g--~i~E~~L~~ia~~VL~GL~YLh~~~~IIHRDIKPsNlLvNskGeVKicDFGVS~~lvnS---~  233 (364)
T KOG0581|consen  159 YMDGGSLDDILKRVG--RIPEPVLGKIARAVLRGLSYLHEERKIIHRDIKPSNLLVNSKGEVKICDFGVSGILVNS---I  233 (364)
T ss_pred             hcCCCCHHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHhhccCeeeccCCHHHeeeccCCCEEeccccccHHhhhh---h
Confidence            999999999997654  48999999999999999999974         679999999999999999999988654   3


Q ss_pred             eecccccc
Q 039406          235 STRVMGTF  242 (243)
Q Consensus       235 ~~~~~GT~  242 (243)
                      ..+++||.
T Consensus       234 a~tfvGT~  241 (364)
T KOG0581|consen  234 ANTFVGTS  241 (364)
T ss_pred             cccccccc
Confidence            44577874

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=1.7e-29  Score=214.99  Aligned_cols=138  Identities=25%  Similarity=0.319  Sum_probs=117.0

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCch---------------hHHHHHHHHHHHHhcCCCccceEEEEEEeC--CeeEE
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGKE---------------GEREFQAEVEIISRVHHKHLVSLVGYYTAG--SQRML  160 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~---------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~--~~~~l  160 (243)
                      .+.|+.+++||+|+||.||+|++..+.+               ......+||.||++|+|||||+|.++..+.  ..+||
T Consensus       116 ~~~feki~kIGeGTyg~VYkAr~~~tgkivALKKvr~d~~~~~~~~t~~REI~ILr~l~HpNIikL~eivt~~~~~siYl  195 (560)
T KOG0600|consen  116 ADSFEKIEKIGEGTYGQVYKARDLETGKIVALKKVRFDNEKEGFPITAIREIKILRRLDHPNIIKLEEIVTSKLSGSIYL  195 (560)
T ss_pred             hHHHHHHHHhcCcchhheeEeeecccCcEEEEEEeecccCCCcchHHHHHHHHHHHhcCCCcccceeeEEEecCCceEEE
Confidence            4668889999999999999998765542               345678999999999999999999998766  68999


Q ss_pred             EEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc------CC--CcEEECCCCcEEEeccCCceecCCCCc
Q 039406          161 VYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD------DL--ANILLDFKFEAKVADFGLAKIASDVNT  232 (243)
Q Consensus       161 v~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~------~~--~NiLl~~~~~~kl~DFG~a~~~~~~~~  232 (243)
                      |+|||+. +|.-++...+ ..|++.+++.++.|++.||+|||.      |+  +|||||++|.+||+|||||+++.....
T Consensus       196 VFeYMdh-DL~GLl~~p~-vkft~~qIKc~mkQLl~Gl~~cH~~gvlHRDIK~SNiLidn~G~LKiaDFGLAr~y~~~~~  273 (560)
T KOG0600|consen  196 VFEYMDH-DLSGLLSSPG-VKFTEPQIKCYMKQLLEGLEYCHSRGVLHRDIKGSNILIDNNGVLKIADFGLARFYTPSGS  273 (560)
T ss_pred             EEecccc-hhhhhhcCCC-cccChHHHHHHHHHHHHHHHHHhhcCeeeccccccceEEcCCCCEEeccccceeeccCCCC
Confidence            9999988 8888876543 359999999999999999999965      44  899999999999999999999876654


Q ss_pred             eeeec
Q 039406          233 HVSTR  237 (243)
Q Consensus       233 ~~~~~  237 (243)
                      ...|.
T Consensus       274 ~~~T~  278 (560)
T KOG0600|consen  274 APYTS  278 (560)
T ss_pred             ccccc
Confidence            43333

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=8.1e-31  Score=209.09  Aligned_cols=143  Identities=19%  Similarity=0.239  Sum_probs=121.4

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc---------------hhHHHHHHHHHHHHhcCCCccceEEE-EEEeCCe-eEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK---------------EGEREFQAEVEIISRVHHKHLVSLVG-YYTAGSQ-RMLV  161 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~---------------~~~~~~~~E~~~l~~l~hp~iv~~~~-~~~~~~~-~~lv  161 (243)
                      .+|.++++||+|.||.||++....+.               +..+.+..|+.+|++|+|||||++|+ -|.+++. ++||
T Consensus        19 ~~y~Il~~IG~GsFg~vykv~~~~~g~l~a~K~i~f~~md~k~rq~~v~Ei~lLkQL~HpNIVqYy~~~f~~~~evlniv   98 (375)
T KOG0591|consen   19 ADYQILKKIGRGSFGEVYKVQCLLDGKLVALKKIQFGMMDAKARQDCVKEISLLKQLNHPNIVQYYAHSFIEDNEVLNIV   98 (375)
T ss_pred             HHHHHHHHHcCCcchheEEeeeccCcchhhhhhcchhhccHHHHHHHHHHHHHHHhcCCchHHHHHHHhhhccchhhHHH
Confidence            56888899999999999999765543               35677899999999999999999998 4555555 9999


Q ss_pred             EeccCCCCHHHHhcc--CCCCCCCHHHHHHHHHHHHHhhhHhhc------------CCCcEEECCCCcEEEeccCCceec
Q 039406          162 YEFVLNNTLVFHLHG--KGQPTMDWPTRIKIALGSAKGLAYLHD------------DLANILLDFKFEAKVADFGLAKIA  227 (243)
Q Consensus       162 ~e~~~~g~L~~~l~~--~~~~~l~~~~~~~i~~~i~~~l~~lH~------------~~~NiLl~~~~~~kl~DFG~a~~~  227 (243)
                      ||||.+|+|..+|+.  ..++.+++..++.++.|+|.||..||.            ||+||+|+.+|.+||+|||+++++
T Consensus        99 mE~c~~GDLsqmIk~~K~qkr~ipE~~Vwk~f~QL~~AL~~cH~~~~r~~VmHRDIKPaNIFl~~~gvvKLGDfGL~r~l  178 (375)
T KOG0591|consen   99 MELCDAGDLSQMIKHFKKQKRLIPEKTVWKYFVQLCRALYHCHSKIPRGTVMHRDIKPANIFLTANGVVKLGDFGLGRFL  178 (375)
T ss_pred             HHhhcccCHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHhccccccceeeccCcchheEEcCCCceeeccchhHhHh
Confidence            999999999998864  234468999999999999999999986            568999999999999999999999


Q ss_pred             CCCCceeeecccccc
Q 039406          228 SDVNTHVSTRVMGTF  242 (243)
Q Consensus       228 ~~~~~~~~~~~~GT~  242 (243)
                      ...... ..+.+|||
T Consensus       179 ~s~~tf-A~S~VGTP  192 (375)
T KOG0591|consen  179 SSKTTF-AHSLVGTP  192 (375)
T ss_pred             cchhHH-HHhhcCCC
Confidence            766553 34589997

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=99.96  E-value=2.4e-29  Score=209.62  Aligned_cols=140  Identities=21%  Similarity=0.336  Sum_probs=122.8

Q ss_pred             CCCCccceeeecCceEEEEEEecCC----------------chhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNG----------------KEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVY  162 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~----------------~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  162 (243)
                      .+|++.+.||+|+||+|-++.....                +.....+.+||+||..|+||||+.+|++|+..+.+.|||
T Consensus        53 HRyE~~etLGkGTYGKVk~A~e~~sgR~VAiKsIrKdkIkdeqDlvhIRREIeIMSsLNHPhII~IyEVFENkdKIvivM  132 (668)
T KOG0611|consen   53 HRYEITETLGKGTYGKVKLAYEHKSGREVAIKSIRKDKIKDEQDLVHIRREIEIMSSLNHPHIIQIYEVFENKDKIVIVM  132 (668)
T ss_pred             hHHHHHHHhcCCcccceeehhhccCCcEeehhhhhhhhcccHHHHHHHHHHHHHHhhcCCCceeehhhhhcCCceEEEEE
Confidence            5788899999999999999865322                234566789999999999999999999999999999999


Q ss_pred             eccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCcee
Q 039406          163 EFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNTHV  234 (243)
Q Consensus       163 e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~~~  234 (243)
                      ||..+|+|.+++.+++  .|++.+++.|++||+.|+.|||.        |++|||+|.++++||+||||+..+.+...  
T Consensus       133 EYaS~GeLYDYiSer~--~LsErEaRhfFRQIvSAVhYCHknrVvHRDLKLENILLD~N~NiKIADFGLSNly~~~kf--  208 (668)
T KOG0611|consen  133 EYASGGELYDYISERG--SLSEREARHFFRQIVSAVHYCHKNRVVHRDLKLENILLDQNNNIKIADFGLSNLYADKKF--  208 (668)
T ss_pred             EecCCccHHHHHHHhc--cccHHHHHHHHHHHHHHHHHHhhccceecccchhheeecCCCCeeeeccchhhhhccccH--
Confidence            9999999999998776  49999999999999999999976        56999999999999999999999876654  


Q ss_pred             eecccccc
Q 039406          235 STRVMGTF  242 (243)
Q Consensus       235 ~~~~~GT~  242 (243)
                      -+++||+|
T Consensus       209 LqTFCGSP  216 (668)
T KOG0611|consen  209 LQTFCGSP  216 (668)
T ss_pred             HHHhcCCc
Confidence            34577775

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=99.95  E-value=7.1e-29  Score=199.78  Aligned_cols=131  Identities=18%  Similarity=0.277  Sum_probs=113.7

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch---------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEe
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE---------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYE  163 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~---------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e  163 (243)
                      +.|+.+.++|+|+||+||+|+.+++.+               ..+-.++||++|++|+|+|+|.++++|.....++||+|
T Consensus         2 ekYE~LgkvGEGSYGvV~KCrnk~TgqIVAIKkF~Esedd~~VkKIAlREIrmLKqLkH~NLVnLiEVFrrkrklhLVFE   81 (396)
T KOG0593|consen    2 EKYEKLGKVGEGSYGVVMKCRNKDTGQIVAIKKFVESEDDPVVKKIALREIRMLKQLKHENLVNLIEVFRRKRKLHLVFE   81 (396)
T ss_pred             cHHhhhhccccCcceEEEEeccCCcccEEEEEeeccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHhcceeEEEee
Confidence            568888999999999999998877643               45667899999999999999999999999999999999


Q ss_pred             ccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCC
Q 039406          164 FVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVN  231 (243)
Q Consensus       164 ~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~  231 (243)
                      ||+..-|. -+....+ .++...+..++.|++.|+.|||.        ||+||||+.+|.+||||||+|+.+....
T Consensus        82 ~~dhTvL~-eLe~~p~-G~~~~~vk~~l~Q~l~ai~~cHk~n~IHRDIKPENILit~~gvvKLCDFGFAR~L~~pg  155 (396)
T KOG0593|consen   82 YCDHTVLH-ELERYPN-GVPSELVKKYLYQLLKAIHFCHKNNCIHRDIKPENILITQNGVVKLCDFGFARTLSAPG  155 (396)
T ss_pred             ecchHHHH-HHHhccC-CCCHHHHHHHHHHHHHHhhhhhhcCeecccCChhheEEecCCcEEeccchhhHhhcCCc
Confidence            99885444 4444433 48999999999999999999976        6799999999999999999999987543

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=99.95  E-value=8.7e-28  Score=206.08  Aligned_cols=131  Identities=30%  Similarity=0.463  Sum_probs=116.4

Q ss_pred             CCccceeeecCceEEEEEEecCCch-----------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccCCCC
Q 039406          101 FSDANLLRQDGFGYVHRGVLPNGKE-----------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNT  169 (243)
Q Consensus       101 ~~~~~~lg~G~~g~V~~~~~~~~~~-----------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~g~  169 (243)
                      +...+.||+|.||.||.|.++....           ..+.|.+|+.+|++|+|+|||++++++..++.+|||||||..|+
T Consensus       208 l~l~~~LG~G~FG~V~~g~~~~~~~vavk~ik~~~m~~~~f~~Ea~iMk~L~H~~lV~l~gV~~~~~piyIVtE~m~~Gs  287 (468)
T KOG0197|consen  208 LKLIRELGSGQFGEVWLGKWNGSTKVAVKTIKEGSMSPEAFLREAQIMKKLRHEKLVKLYGVCTKQEPIYIVTEYMPKGS  287 (468)
T ss_pred             HHHHHHhcCCccceEEEEEEcCCCcccceEEeccccChhHHHHHHHHHHhCcccCeEEEEEEEecCCceEEEEEecccCc
Confidence            3446799999999999999876521           34788999999999999999999999999889999999999999


Q ss_pred             HHHHhccCCCCCCCHHHHHHHHHHHHHhhhHh------hcCC--CcEEECCCCcEEEeccCCceecCCCC
Q 039406          170 LVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL------HDDL--ANILLDFKFEAKVADFGLAKIASDVN  231 (243)
Q Consensus       170 L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~l------H~~~--~NiLl~~~~~~kl~DFG~a~~~~~~~  231 (243)
                      |.++|.......+...+.+.++.|||.|++||      |||+  .||||+++..+||+||||||.+.++.
T Consensus       288 Ll~yLr~~~~~~l~~~~Ll~~a~qIaeGM~YLes~~~IHRDLAARNiLV~~~~~vKIsDFGLAr~~~d~~  357 (468)
T KOG0197|consen  288 LLDYLRTREGGLLNLPQLLDFAAQIAEGMAYLESKNYIHRDLAARNILVDEDLVVKISDFGLARLIGDDE  357 (468)
T ss_pred             HHHHhhhcCCCccchHHHHHHHHHHHHHHHHHHhCCccchhhhhhheeeccCceEEEcccccccccCCCc
Confidence            99999875555789999999999999999998      8888  49999999999999999999665544

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=99.95  E-value=6.1e-27  Score=200.99  Aligned_cols=133  Identities=24%  Similarity=0.282  Sum_probs=119.2

Q ss_pred             HHHhCCCCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhc-CCCccceEEEEEEeCCe
Q 039406           95 ARATDGFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRV-HHKHLVSLVGYYTAGSQ  157 (243)
Q Consensus        95 ~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~  157 (243)
                      .+..++|.+++.||+|+|++||+|+.+.+..                ..+.+.+|-.+|.+| .||.|++||-.|.+...
T Consensus        69 kk~~~DF~Fg~~lGeGSYStV~~A~~~~t~keYAiKVl~K~~Iike~KvkYV~~Ek~~l~~L~~hPgivkLy~TFQD~~s  148 (604)
T KOG0592|consen   69 KKTPNDFKFGKILGEGSYSTVVLAREKATGKEYAIKVLDKRYIIKEKKVKYVTREKEALTQLSGHPGIVKLYFTFQDEES  148 (604)
T ss_pred             cCChhhcchhheeccccceeEEEeeecCCCceeeHhhhhHHHHHhhcccchhhHHHHHHHHhhCCCCeEEEEEEeecccc
Confidence            4455899999999999999999998776543                234566788899999 89999999999999999


Q ss_pred             eEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          158 RMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       158 ~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      +|+|+||+++|+|.++|++.+  .|++..++.++.+|+.||+|||+        ||+|||||.+|++||+|||.|+.+..
T Consensus       149 LYFvLe~A~nGdll~~i~K~G--sfde~caR~YAAeIldAleylH~~GIIHRDlKPENILLd~dmhikITDFGsAK~l~~  226 (604)
T KOG0592|consen  149 LYFVLEYAPNGDLLDLIKKYG--SFDETCARFYAAEILDALEYLHSNGIIHRDLKPENILLDKDGHIKITDFGSAKILSP  226 (604)
T ss_pred             eEEEEEecCCCcHHHHHHHhC--cchHHHHHHHHHHHHHHHHHHHhcCceeccCChhheeEcCCCcEEEeeccccccCCh
Confidence            999999999999999998776  59999999999999999999976        67999999999999999999999864

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=99.95  E-value=2e-27  Score=202.64  Aligned_cols=142  Identities=30%  Similarity=0.487  Sum_probs=119.8

Q ss_pred             CCCccceeeecCceEEEEEEecCCc-h-------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCC-eeEEEEec
Q 039406          100 GFSDANLLRQDGFGYVHRGVLPNGK-E-------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGS-QRMLVYEF  164 (243)
Q Consensus       100 ~~~~~~~lg~G~~g~V~~~~~~~~~-~-------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-~~~lv~e~  164 (243)
                      ++...+.||.|+||+||++.++... .             ..+.|.+|+.+|.+++|||||+++|++.... .++|||||
T Consensus        42 ~l~~~~~iG~G~~g~V~~~~~~g~~~vavK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~f~G~~~~~~~~~~iVtEy  121 (362)
T KOG0192|consen   42 ELPIEEVLGSGSFGTVYKGKWRGTDVVAVKIISDPDFDDESRKAFRREASLLSRLRHPNIVQFYGACTSPPGSLCIVTEY  121 (362)
T ss_pred             HhhhhhhcccCCceeEEEEEeCCceeEEEEEecchhcChHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCceEEEEEe
Confidence            3444566999999999999887654 2             2458999999999999999999999999887 79999999


Q ss_pred             cCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc---------CCCcEEECCCC-cEEEeccCCceecCCCCcee
Q 039406          165 VLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD---------DLANILLDFKF-EAKVADFGLAKIASDVNTHV  234 (243)
Q Consensus       165 ~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~---------~~~NiLl~~~~-~~kl~DFG~a~~~~~~~~~~  234 (243)
                      |++|+|.++++...+..+++..++.++.||+.||.|||.         |++|||++.++ ++||+|||+++...... ..
T Consensus       122 ~~~GsL~~~l~~~~~~~l~~~~~l~~aldiArGm~YLH~~~~iIHrDLK~~NiLv~~~~~~~KI~DFGlsr~~~~~~-~~  200 (362)
T KOG0192|consen  122 MPGGSLSVLLHKKRKRKLPLKVRLRIALDIARGMEYLHSEGPIIHRDLKSDNILVDLKGKTLKIADFGLSREKVISK-TS  200 (362)
T ss_pred             CCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcCCCeeecccChhhEEEcCCCCEEEECCCccceeecccc-cc
Confidence            999999999987434469999999999999999999987         34899999998 99999999999876543 22


Q ss_pred             eecccccc
Q 039406          235 STRVMGTF  242 (243)
Q Consensus       235 ~~~~~GT~  242 (243)
                      .+...||+
T Consensus       201 ~~~~~GT~  208 (362)
T KOG0192|consen  201 MTSVAGTY  208 (362)
T ss_pred             ccCCCCCc
Confidence            33367775

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=99.95  E-value=2.8e-27  Score=187.39  Aligned_cols=132  Identities=24%  Similarity=0.372  Sum_probs=117.1

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch---------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEe
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE---------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYE  163 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~---------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e  163 (243)
                      ++|...++||+|+||+||+|++..+.+               .....++||+.|+.++|+||+.++++|...+.+.||+|
T Consensus         2 ~rY~~~~~lGEG~~gvVyka~d~~t~~~VAIKKIkl~~~kdGi~~talREIK~Lqel~h~nIi~LiD~F~~~~~l~lVfE   81 (318)
T KOG0659|consen    2 DRYEKLEKLGEGTYGVVYKARDTETGKRVAIKKIKLGNAKDGINRTALREIKLLQELKHPNIIELIDVFPHKSNLSLVFE   81 (318)
T ss_pred             chhhhhhhhcCcceEEEEEEEecCCCcEEEEEEeeccccccCccHHHHHHHHHHHHccCcchhhhhhhccCCCceEEEEE
Confidence            468888999999999999998766543               23457899999999999999999999999999999999


Q ss_pred             ccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCc
Q 039406          164 FVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNT  232 (243)
Q Consensus       164 ~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~  232 (243)
                      ||+. +|+..|+.+.. .+...+++.++.++++||+|||+        ||.|+||+.+|.+||+|||+|+.+...+.
T Consensus        82 fm~t-dLe~vIkd~~i-~l~pa~iK~y~~m~LkGl~y~H~~~IlHRDlKPnNLLis~~g~lKiADFGLAr~f~~p~~  156 (318)
T KOG0659|consen   82 FMPT-DLEVVIKDKNI-ILSPADIKSYMLMTLKGLAYCHSKWILHRDLKPNNLLISSDGQLKIADFGLARFFGSPNR  156 (318)
T ss_pred             eccc-cHHHHhccccc-ccCHHHHHHHHHHHHHHHHHHHhhhhhcccCCccceEEcCCCcEEeecccchhccCCCCc
Confidence            9966 99999976554 68999999999999999999976        67999999999999999999999976554

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=99.94  E-value=7.6e-28  Score=207.52  Aligned_cols=140  Identities=25%  Similarity=0.381  Sum_probs=124.9

Q ss_pred             CCCCccceeeecCceEEEEEEecCC---------------chhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEe
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNG---------------KEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYE  163 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~---------------~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e  163 (243)
                      ++|.+.+.||+|.||+||||+.+.+               ++..+.+.+|++|++.|+|||||.++++|++..++|+|.|
T Consensus         2 e~yhv~e~iG~Gsfg~VYKgrrK~t~~~vAik~i~K~gr~~k~l~~l~~ev~i~r~lkHpniv~m~esfEt~~~~~vVte   81 (808)
T KOG0597|consen    2 EQYHVYEMIGEGSFGRVYKGRRKYTIQVVAIKFIDKSGRNEKELKNLRQEVRILRSLKHPNIVEMLESFETSAHLWVVTE   81 (808)
T ss_pred             cchhHHHHhcCCccceeeecccccceeEEEEEEehhcCCchHHHHHHHHHHHHHHhcCCcchhhHHHhhcccceEEEEeh
Confidence            5788889999999999999976554               2356778999999999999999999999999999999999


Q ss_pred             ccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCceee
Q 039406          164 FVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNTHVS  235 (243)
Q Consensus       164 ~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~~~~  235 (243)
                      ||.| +|..++...+.  +++..+..|+.+++.||.|||.        ||.|||++..|.+|+||||+|+.+..+.. +.
T Consensus        82 ~a~g-~L~~il~~d~~--lpEe~v~~~a~~LVsaL~yLhs~rilhrd~kPqniLl~~~~~~KlcdFg~Ar~m~~~t~-vl  157 (808)
T KOG0597|consen   82 YAVG-DLFTILEQDGK--LPEEQVRAIAYDLVSALYYLHSNRILHRDMKPQNILLEKGGTLKLCDFGLARAMSTNTS-VL  157 (808)
T ss_pred             hhhh-hHHHHHHhccC--CCHHHHHHHHHHHHHHHHHHHhcCcccccCCcceeeecCCCceeechhhhhhhcccCce-ee
Confidence            9977 99999987664  9999999999999999999987        67899999999999999999999887544 55


Q ss_pred             ecccccc
Q 039406          236 TRVMGTF  242 (243)
Q Consensus       236 ~~~~GT~  242 (243)
                      +.+.|||
T Consensus       158 tsikGtP  164 (808)
T KOG0597|consen  158 TSIKGTP  164 (808)
T ss_pred             eeccCcc
Confidence            6688886

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=99.94  E-value=5e-26  Score=195.45  Aligned_cols=125  Identities=22%  Similarity=0.311  Sum_probs=106.8

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc--------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEec
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK--------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEF  164 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~--------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  164 (243)
                      ++|+..+.||+|+||.||++++..+.              .....+.+|+++|++++|+||+++++++...+.+|+||||
T Consensus        74 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~  153 (353)
T PLN00034         74 SELERVNRIGSGAGGTVYKVIHRPTGRLYALKVIYGNHEDTVRRQICREIEILRDVNHPNVVKCHDMFDHNGEIQVLLEF  153 (353)
T ss_pred             HHHhhhhhccCCCCeEEEEEEECCCCCEEEEEEEecCCcHHHHHHHHHHHHHHHhCCCCCcceeeeEeccCCeEEEEEec
Confidence            45666789999999999999865432              2346788999999999999999999999999999999999


Q ss_pred             cCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          165 VLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       165 ~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      |++++|.+..      ...+..+..++.||+.||.|||.        +++|||++.++.+||+|||+++.+..
T Consensus       154 ~~~~~L~~~~------~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~kL~DfG~~~~~~~  220 (353)
T PLN00034        154 MDGGSLEGTH------IADEQFLADVARQILSGIAYLHRRHIVHRDIKPSNLLINSAKNVKIADFGVSRILAQ  220 (353)
T ss_pred             CCCCcccccc------cCCHHHHHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEcCCCCEEEcccccceeccc
Confidence            9999986532      25667788899999999999976        45899999999999999999987653

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.94  E-value=2.9e-26  Score=201.56  Aligned_cols=141  Identities=28%  Similarity=0.403  Sum_probs=121.4

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhc-CCCccceEEEEEEeCCeeEE
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRV-HHKHLVSLVGYYTAGSQRML  160 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~~~l  160 (243)
                      .++|..+++||+|.||+|+++.++.+.+                ..+..+.|.+|+.-+ +||+++.++..|.+.+++|+
T Consensus       367 l~~F~~l~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~~Il~~d~Ve~~~~EkrI~~la~~HPFL~~L~~~fQT~~~l~f  446 (694)
T KOG0694|consen  367 LDDFRLLAVLGRGSFGKVLLAELKGTNEYYAIKVLKKGDILQRDEVESLMCEKRIFELANRHPFLVNLFSCFQTKEHLFF  446 (694)
T ss_pred             ccceEEEEEeccCcCceEEEEEEcCCCcEEEEEEeeccceeccccHHHHHHHHHHHHHhccCCeEeecccccccCCeEEE
Confidence            4889999999999999999998877643                466778888888877 59999999999999999999


Q ss_pred             EEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCc
Q 039406          161 VYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNT  232 (243)
Q Consensus       161 v~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~  232 (243)
                      ||||+.||++..+++..   .+++.+++.|+..|+.||.|||.        |++|||||.+|++||+|||+|+.---...
T Consensus       447 vmey~~Ggdm~~~~~~~---~F~e~rarfyaAev~l~L~fLH~~~IIYRDlKLdNiLLD~eGh~kiADFGlcKe~m~~g~  523 (694)
T KOG0694|consen  447 VMEYVAGGDLMHHIHTD---VFSEPRARFYAAEVVLGLQFLHENGIIYRDLKLDNLLLDTEGHVKIADFGLCKEGMGQGD  523 (694)
T ss_pred             EEEecCCCcEEEEEecc---cccHHHHHHHHHHHHHHHHHHHhcCceeeecchhheEEcccCcEEecccccccccCCCCC
Confidence            99999999965554422   49999999999999999999998        56999999999999999999997543333


Q ss_pred             eeeecccccc
Q 039406          233 HVSTRVMGTF  242 (243)
Q Consensus       233 ~~~~~~~GT~  242 (243)
                       .++++||||
T Consensus       524 -~TsTfCGTp  532 (694)
T KOG0694|consen  524 -RTSTFCGTP  532 (694)
T ss_pred             -ccccccCCh
Confidence             466799997

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=99.94  E-value=3.1e-27  Score=192.54  Aligned_cols=132  Identities=24%  Similarity=0.266  Sum_probs=114.5

Q ss_pred             CCCCccceeeecCceEEEEEEecCCchh---------------HHHHHHHHHHHHhcCCCccceEEEEEE--eCCeeEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKEG---------------EREFQAEVEIISRVHHKHLVSLVGYYT--AGSQRMLV  161 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~---------------~~~~~~E~~~l~~l~hp~iv~~~~~~~--~~~~~~lv  161 (243)
                      +.|+.+++|++|+||.||+|+++.+.+.               --..++||.+|.+++|||||.+-++..  .-+.+|||
T Consensus        76 ~efe~lnrI~EGtyGiVYRakdk~t~eIVALKr~kmekek~GFPItsLREIniLl~~~H~NIV~vkEVVvG~~~d~iy~V  155 (419)
T KOG0663|consen   76 EEFEKLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINILLKARHPNIVEVKEVVVGSNMDKIYIV  155 (419)
T ss_pred             HHHHHHhhcccCcceeEEEeccCCcceeEEeeecccccccCCCcchhHHHHHHHHhcCCCCeeeeEEEEeccccceeeee
Confidence            5678889999999999999998877541               123579999999999999999999876  34579999


Q ss_pred             EeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCc
Q 039406          162 YEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNT  232 (243)
Q Consensus       162 ~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~  232 (243)
                      ||||+. +|..++...+. .+...+++.++.|++.|++|||.        |++|+|++..|.+||+|||+||.+++.-.
T Consensus       156 Me~~Eh-DLksl~d~m~q-~F~~~evK~L~~QlL~glk~lH~~wilHRDLK~SNLLm~~~G~lKiaDFGLAR~ygsp~k  232 (419)
T KOG0663|consen  156 MEYVEH-DLKSLMETMKQ-PFLPGEVKTLMLQLLRGLKHLHDNWILHRDLKTSNLLLSHKGILKIADFGLAREYGSPLK  232 (419)
T ss_pred             HHHHHh-hHHHHHHhccC-CCchHHHHHHHHHHHHHHHHHhhceeEecccchhheeeccCCcEEecccchhhhhcCCcc
Confidence            999987 99999987664 59999999999999999999976        56999999999999999999999987643

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.94  E-value=2.2e-26  Score=197.67  Aligned_cols=142  Identities=21%  Similarity=0.293  Sum_probs=121.8

Q ss_pred             HhCCCCccceeeecCceEEEEEEecCCc------------------hhHHHHHHHHHHHHhcC-CCccceEEEEEEeCCe
Q 039406           97 ATDGFSDANLLRQDGFGYVHRGVLPNGK------------------EGEREFQAEVEIISRVH-HKHLVSLVGYYTAGSQ  157 (243)
Q Consensus        97 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~------------------~~~~~~~~E~~~l~~l~-hp~iv~~~~~~~~~~~  157 (243)
                      ..++|...+.||+|+||.|+.|....+.                  ...+.+.+|+.+|++++ ||||+++++++.....
T Consensus        15 ~~g~y~~~~~lG~GsfgkV~~a~~~~t~~~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~~~~HpnI~~l~ev~~t~~~   94 (370)
T KOG0583|consen   15 SIGKYELGRTLGSGSFGKVKLAKHRLTGEKVAIKIIDRKKVSSKSQKLDELIKREISILRRLRSHPNIIRLLEVFATPTK   94 (370)
T ss_pred             ccCceeeeeeecCCCCeeEEEeeeccCCCeEEEEEechhcccccccccchhhHHHHHHHHHhccCCCEeEEEEEEecCCe
Confidence            3478999999999999999999764431                  23445668999999998 9999999999999999


Q ss_pred             eEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCC-CcEEEeccCCceecC
Q 039406          158 RMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFK-FEAKVADFGLAKIAS  228 (243)
Q Consensus       158 ~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~-~~~kl~DFG~a~~~~  228 (243)
                      +|+|||||.||+|.+++...+  .+.+..++.++.|++.|+.|||+        |++|||+|.+ +++||+|||++....
T Consensus        95 ~~ivmEy~~gGdL~~~i~~~g--~l~E~~ar~~F~Qlisav~y~H~~gi~HRDLK~ENilld~~~~~~Kl~DFG~s~~~~  172 (370)
T KOG0583|consen   95 IYIVMEYCSGGDLFDYIVNKG--RLKEDEARKYFRQLISAVAYCHSRGIVHRDLKPENILLDGNEGNLKLSDFGLSAISP  172 (370)
T ss_pred             EEEEEEecCCccHHHHHHHcC--CCChHHHHHHHHHHHHHHHHHHhCCEeeCCCCHHHEEecCCCCCEEEeccccccccC
Confidence            999999999999999998744  48899999999999999999987        5699999999 999999999999884


Q ss_pred             -CCCceeeecccccc
Q 039406          229 -DVNTHVSTRVMGTF  242 (243)
Q Consensus       229 -~~~~~~~~~~~GT~  242 (243)
                       ...  ...+.|||+
T Consensus       173 ~~~~--~l~t~cGsp  185 (370)
T KOG0583|consen  173 GEDG--LLKTFCGSP  185 (370)
T ss_pred             CCCC--cccCCCCCc
Confidence             222  234578886

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=3.9e-27  Score=184.04  Aligned_cols=142  Identities=25%  Similarity=0.313  Sum_probs=124.5

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEE
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLV  161 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv  161 (243)
                      .++|++++.||+|.||.||.|+.+.+..                ....+.+|++|-..|+||||+++|++|.+...+||+
T Consensus        21 l~dfeigr~LgkgkFG~vYlarekks~~IvalKVlfKsqi~~~~v~~qlrREiEIqs~L~hpnilrlY~~fhd~~riyLi  100 (281)
T KOG0580|consen   21 LDDFEIGRPLGKGKFGNVYLAREKKSLFIVALKVLFKSQILKTQVEHQLRREIEIQSHLRHPNILRLYGYFHDSKRIYLI  100 (281)
T ss_pred             hhhccccccccCCccccEeEeeeccCCcEEEEeeeeHHHHHHhcchhhhhheeEeecccCCccHHhhhhheeccceeEEE
Confidence            3789999999999999999999877642                356788999999999999999999999999999999


Q ss_pred             EeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCce
Q 039406          162 YEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNTH  233 (243)
Q Consensus       162 ~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~~  233 (243)
                      +||..+|+|...+.......+++.....++.|++.||.|||.        ||+|+|++..+.+||+|||.+.....+.  
T Consensus       101 lEya~~gel~k~L~~~~~~~f~e~~~a~Yi~q~A~Al~y~h~k~VIhRdiKpenlLlg~~~~lkiAdfGwsV~~p~~k--  178 (281)
T KOG0580|consen  101 LEYAPRGELYKDLQEGRMKRFDEQRAATYIKQLANALLYCHLKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSNK--  178 (281)
T ss_pred             EEecCCchHHHHHHhcccccccccchhHHHHHHHHHHHHhccCCcccCCCCHHHhccCCCCCeeccCCCceeecCCCC--
Confidence            999999999999986555569999999999999999999976        5689999999999999999998875322  


Q ss_pred             eeecccccc
Q 039406          234 VSTRVMGTF  242 (243)
Q Consensus       234 ~~~~~~GT~  242 (243)
                       ..++|||.
T Consensus       179 -R~tlcgt~  186 (281)
T KOG0580|consen  179 -RKTLCGTL  186 (281)
T ss_pred             -ceeeeccc
Confidence             34578885

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.93  E-value=7.5e-27  Score=197.69  Aligned_cols=132  Identities=22%  Similarity=0.241  Sum_probs=114.9

Q ss_pred             HhCCCCccceeeecCceEEEEEEecCCch------hH--------HHHHHHHHHHHhcC-CCccceEEEEEEeCC-eeEE
Q 039406           97 ATDGFSDANLLRQDGFGYVHRGVLPNGKE------GE--------REFQAEVEIISRVH-HKHLVSLVGYYTAGS-QRML  160 (243)
Q Consensus        97 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~------~~--------~~~~~E~~~l~~l~-hp~iv~~~~~~~~~~-~~~l  160 (243)
                      ..++|...++||.|+||.||+|+-+...+      ..        -.-+||++.|++|+ |||||+|.+++.+.+ .+|+
T Consensus         8 ~m~RY~~i~klGDGTfGsV~la~~~~~~~~VAIK~MK~Kf~s~ee~~nLREvksL~kln~hpniikL~Evi~d~~~~L~f   87 (538)
T KOG0661|consen    8 FMDRYTVIRKLGDGTFGSVYLAKSKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNPHPNIIKLKEVIRDNDRILYF   87 (538)
T ss_pred             HHHHHHHHHHhcCCcceeEEEeeecCCCceeeHHHHHhhhccHHHHHHHHHHHHHHhcCCCCcchhhHHHhhccCceEee
Confidence            45789999999999999999998766543      11        11268999999998 999999999999888 9999


Q ss_pred             EEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          161 VYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       161 v~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      |||||+. +|.++++.+ +..|++..++.|+.||++||+|+|.        ||+|||+.....+||+|||+||.+...
T Consensus        88 VfE~Md~-NLYqLmK~R-~r~fse~~irnim~QilqGL~hiHk~GfFHRDlKPENiLi~~~~~iKiaDFGLARev~Sk  163 (538)
T KOG0661|consen   88 VFEFMDC-NLYQLMKDR-NRLFSESDIRNIMYQILQGLAHIHKHGFFHRDLKPENILISGNDVIKIADFGLAREVRSK  163 (538)
T ss_pred             eHHhhhh-hHHHHHhhc-CCcCCHHHHHHHHHHHHHHHHHHHhcCcccccCChhheEecccceeEecccccccccccC
Confidence            9999966 999999987 4579999999999999999999976        679999999999999999999987543

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.93  E-value=1.8e-26  Score=197.13  Aligned_cols=144  Identities=22%  Similarity=0.304  Sum_probs=125.6

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCch---------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCe-eEEE
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGKE---------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQ-RMLV  161 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~---------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~-~~lv  161 (243)
                      .++|..+++||+|+||.++.++++....               ..+..++|+.++++++|||||.+++.|+.++. ++||
T Consensus         3 m~~Ye~~~~iG~GafG~a~lvrhk~~~~~~vlK~I~l~~~t~~~r~~A~~E~~lis~~~hP~iv~y~ds~~~~~~~l~Iv   82 (426)
T KOG0589|consen    3 MDNYEVLRQVGRGAFGSALLVRHKSDDKLYVLKKINLEKLTEPERRSAIQEMDLLSKLLHPNIVEYKDSFEEDGQLLCIV   82 (426)
T ss_pred             cchhhhhhhcCccccchhhhhhhccCCceEEEEEEeccccCchhhHHHHHHHHHHHhccCCCeeeeccchhcCCceEEEE
Confidence            3689999999999999999887655432               45577899999999999999999999998887 9999


Q ss_pred             EeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCce
Q 039406          162 YEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNTH  233 (243)
Q Consensus       162 ~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~~  233 (243)
                      |+||+||+|.+.|.+.+...+++..++.++.|++.|+.|||.        |..|||++.++.|||+|||+|+.+..... 
T Consensus        83 m~Y~eGg~l~~~i~~~k~~~f~E~~i~~~~~Q~~~av~ylH~~~iLHRDlK~~Nifltk~~~VkLgDfGlaK~l~~~~~-  161 (426)
T KOG0589|consen   83 MEYCEGGDLAQLIKEQKGVLFPEERILKWFVQILLAVNYLHENRVLHRDLKCANIFLTKDKKVKLGDFGLAKILNPEDS-  161 (426)
T ss_pred             EeecCCCCHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhhhhhcccchhhhhhccccCceeecchhhhhhcCCchh-
Confidence            999999999999987776678999999999999999999975        34899999999999999999999987653 


Q ss_pred             eeecccccc
Q 039406          234 VSTRVMGTF  242 (243)
Q Consensus       234 ~~~~~~GT~  242 (243)
                      ...+++||+
T Consensus       162 ~a~tvvGTp  170 (426)
T KOG0589|consen  162 LASTVVGTP  170 (426)
T ss_pred             hhheecCCC
Confidence            334588886

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.93  E-value=2.5e-25  Score=185.13  Aligned_cols=130  Identities=29%  Similarity=0.410  Sum_probs=113.4

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch---------h----HHHHHHHHHHHHhcCCCccceEEEEEEeCC--eeEEEEe
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE---------G----EREFQAEVEIISRVHHKHLVSLVGYYTAGS--QRMLVYE  163 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~---------~----~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~--~~~lv~e  163 (243)
                      .++...+.||+|+||.||++...++..         .    .+.+.+|+.+|.+++|+|||+++|......  .++|+||
T Consensus        17 ~~~~~~~~lG~Gs~G~V~l~~~~~~g~~~AvK~v~~~~~~~~~~l~~Ei~iL~~l~~p~IV~~~G~~~~~~~~~~~i~mE   96 (313)
T KOG0198|consen   17 SNWSKGKLLGRGSFGSVYLATNKKTGELMAVKSVELEDSPTSESLEREIRILSRLNHPNIVQYYGSSSSRENDEYNIFME   96 (313)
T ss_pred             chhhhhccccCccceEEEEEEecCCCcceeeeeeecccchhHHHHHHHHHHHHhCCCCCEEeeCCccccccCeeeEeeee
Confidence            457778999999999999998776321         1    456899999999999999999999755444  6999999


Q ss_pred             ccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECC-CCcEEEeccCCceecCC
Q 039406          164 FVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDF-KFEAKVADFGLAKIASD  229 (243)
Q Consensus       164 ~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~-~~~~kl~DFG~a~~~~~  229 (243)
                      |+.+|+|.+++.+.+. .+++..++.+..||+.||.|||+        |++|||++. ++.+||+|||+++....
T Consensus        97 y~~~GsL~~~~~~~g~-~l~E~~v~~ytr~iL~GL~ylHs~g~vH~DiK~~NiLl~~~~~~~KlaDFG~a~~~~~  170 (313)
T KOG0198|consen   97 YAPGGSLSDLIKRYGG-KLPEPLVRRYTRQILEGLAYLHSKGIVHCDIKPANILLDPSNGDVKLADFGLAKKLES  170 (313)
T ss_pred             ccCCCcHHHHHHHcCC-CCCHHHHHHHHHHHHHHHHHHHhCCEeccCcccceEEEeCCCCeEEeccCcccccccc
Confidence            9999999999988776 69999999999999999999986        568999999 79999999999998763

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=99.93  E-value=2.6e-25  Score=190.85  Aligned_cols=129  Identities=21%  Similarity=0.250  Sum_probs=113.3

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEE
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLV  161 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv  161 (243)
                      .++|+.++.||+|+||.||+|+-+.+.+                ..+-++.|-.+|...++++||+||..|.+..++|||
T Consensus       140 ~~DFe~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkKS~M~~~~Qv~hV~aERdiL~~~ds~~vVKLyYsFQD~~~LYLi  219 (550)
T KOG0605|consen  140 LDDFELLKVIGKGAFGEVRLARKKDTGEIYAMKILKKSEMLKKNQVEHVRAERDILAEVDSPWVVKLYYSFQDKEYLYLI  219 (550)
T ss_pred             cccchhheeeccccceeEEEEEEccCCcEEeeecccHHHHHhhhhHHHHHHHHHHhhhcCCCcEEEEEEEecCCCeeEEE
Confidence            4789999999999999999998777654                345567788999999999999999999999999999


Q ss_pred             EeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhh------c--CCCcEEECCCCcEEEeccCCceecC
Q 039406          162 YEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLH------D--DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       162 ~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH------~--~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      |||++||++..+|...+  .|++..++.++.+++.|++-||      |  ||+|+|||..|++||+|||||.-+.
T Consensus       220 MEylPGGD~mTLL~~~~--~L~e~~arfYiaE~vlAI~~iH~~gyIHRDIKPdNlLiD~~GHiKLSDFGLs~gl~  292 (550)
T KOG0605|consen  220 MEYLPGGDMMTLLMRKD--TLTEDWARFYIAETVLAIESIHQLGYIHRDIKPDNLLIDAKGHIKLSDFGLSTGLD  292 (550)
T ss_pred             EEecCCccHHHHHHhcC--cCchHHHHHHHHHHHHHHHHHHHcCcccccCChhheeecCCCCEeeccccccchhh
Confidence            99999999999997665  5999999999888888777664      5  6799999999999999999997653

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=99.93  E-value=4.5e-25  Score=190.75  Aligned_cols=142  Identities=18%  Similarity=0.196  Sum_probs=119.5

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEE
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLV  161 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv  161 (243)
                      .++|.+.+.||+|+||.||+++...+.+                ....+.+|+.+++.++|+||+++++++.+++.+|+|
T Consensus        42 ~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~~~~lv  121 (370)
T cd05621          42 AEDYDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFCAFQDDKYLYMV  121 (370)
T ss_pred             HHHCeEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEE
Confidence            4789999999999999999998765432                234577899999999999999999999999999999


Q ss_pred             EeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCce
Q 039406          162 YEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNTH  233 (243)
Q Consensus       162 ~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~~  233 (243)
                      ||||.+|+|.+++...   .+++..++.++.|++.||.|||.        ||+|||++.++.+||+|||+|+.+......
T Consensus       122 ~Ey~~gg~L~~~l~~~---~~~~~~~~~~~~qil~aL~~LH~~~IvHrDLKp~NILl~~~~~~kL~DFG~a~~~~~~~~~  198 (370)
T cd05621         122 MEYMPGGDLVNLMSNY---DVPEKWAKFYTAEVVLALDAIHSMGLIHRDVKPDNMLLDKHGHLKLADFGTCMKMDETGMV  198 (370)
T ss_pred             EcCCCCCcHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHEEECCCCCEEEEecccceecccCCce
Confidence            9999999999998643   37888999999999999999976        568999999999999999999987544332


Q ss_pred             eeecccccc
Q 039406          234 VSTRVMGTF  242 (243)
Q Consensus       234 ~~~~~~GT~  242 (243)
                      .....+||+
T Consensus       199 ~~~~~~gt~  207 (370)
T cd05621         199 RCDTAVGTP  207 (370)
T ss_pred             ecccCCCCc
Confidence            223455665

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=99.92  E-value=1.5e-24  Score=187.75  Aligned_cols=129  Identities=29%  Similarity=0.476  Sum_probs=112.6

Q ss_pred             CCCCccceeeecCceEEEEEEecCC-------------chhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEecc
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNG-------------KEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFV  165 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~-------------~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~  165 (243)
                      +...++++||+|.||+|.+|.....             +.....|.+|+++|.+|+|||||+++++|..++.+++|+|||
T Consensus       538 s~L~~~ekiGeGqFGEVhLCeveg~lkVAVK~Lr~~a~~~~r~~F~kEIkiLsqLkhPNIveLvGVC~~DePicmI~EYm  617 (807)
T KOG1094|consen  538 SRLRFKEKIGEGQFGEVHLCEVEGPLKVAVKILRPDATKNARNDFLKEIKILSRLKHPNIVELLGVCVQDDPLCMITEYM  617 (807)
T ss_pred             hheehhhhhcCcccceeEEEEecCceEEEEeecCcccchhHHHHHHHHHHHHhccCCCCeeEEEeeeecCCchHHHHHHH
Confidence            5567789999999999999975541             235688999999999999999999999999999999999999


Q ss_pred             CCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHh------hcCC--CcEEECCCCcEEEeccCCceec
Q 039406          166 LNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL------HDDL--ANILLDFKFEAKVADFGLAKIA  227 (243)
Q Consensus       166 ~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~l------H~~~--~NiLl~~~~~~kl~DFG~a~~~  227 (243)
                      ++|+|.+++..+....+.-.....|+.||+.|++||      |+|+  .|||+|.++++||+|||++|-+
T Consensus       618 EnGDLnqFl~aheapt~~t~~~vsi~tqiasgmaYLes~nfVHrd~a~rNcLv~~e~~iKiadfgmsR~l  687 (807)
T KOG1094|consen  618 ENGDLNQFLSAHELPTAETAPGVSICTQIASGMAYLESLNFVHRDLATRNCLVDGEFTIKIADFGMSRNL  687 (807)
T ss_pred             hcCcHHHHHHhccCcccccchhHHHHHHHHHHHHHHHhhchhhccccccceeecCcccEEecCccccccc
Confidence            999999999877544445556677999999999998      8887  5999999999999999999954

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.92  E-value=6.1e-25  Score=190.86  Aligned_cols=129  Identities=28%  Similarity=0.426  Sum_probs=113.6

Q ss_pred             CCCCccceeeecCceEEEEEEecCC--------------------chhHHHHHHHHHHHHhcCCCccceEEEEEEeCCee
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNG--------------------KEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQR  158 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~--------------------~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~  158 (243)
                      ++....++||+|+||.||+|.++..                    ++..+.|++|.++|++++|+|||++||+......+
T Consensus       157 ~~v~l~kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~~~~~~~~e~m~EArvMr~l~H~NVVr~yGVa~~~~Pl  236 (474)
T KOG0194|consen  157 SDIELGKKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSSELTKEQIKEFMKEARVMRQLNHPNVVRFYGVAVLEEPL  236 (474)
T ss_pred             cCccccceeecccccEEEEEEEEecCCceeeeeEEEeecccccccHHHHHHHHHHHHHHHhCCCCCEEEEEEEEcCCCcc
Confidence            4555678999999999999975532                    22567899999999999999999999999999999


Q ss_pred             EEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc------CC--CcEEECCCCcEEEeccCCceecC
Q 039406          159 MLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD------DL--ANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       159 ~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~------~~--~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      +||||+|.||+|.+++...+. .++..+.+.++.+.+.||+|||.      |+  .|+|++.++.+||+|||+++.-.
T Consensus       237 ~ivmEl~~gGsL~~~L~k~~~-~v~~~ek~~~~~~AA~Gl~YLh~k~~IHRDIAARNcL~~~~~~vKISDFGLs~~~~  313 (474)
T KOG0194|consen  237 MLVMELCNGGSLDDYLKKNKK-SLPTLEKLRFCYDAARGLEYLHSKNCIHRDIAARNCLYSKKGVVKISDFGLSRAGS  313 (474)
T ss_pred             EEEEEecCCCcHHHHHHhCCC-CCCHHHHHHHHHHHHhHHHHHHHCCCcchhHhHHHheecCCCeEEeCccccccCCc
Confidence            999999999999999987665 59999999999999999999965      55  49999999999999999988653

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.92  E-value=1.2e-24  Score=184.51  Aligned_cols=132  Identities=20%  Similarity=0.289  Sum_probs=111.1

Q ss_pred             HHHHhCCCCccceeeecCceEEEEEEecCCch---------------------------hHHHHHHHHHHHHhcCCCccc
Q 039406           94 LARATDGFSDANLLRQDGFGYVHRGVLPNGKE---------------------------GEREFQAEVEIISRVHHKHLV  146 (243)
Q Consensus        94 ~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~---------------------------~~~~~~~E~~~l~~l~hp~iv  146 (243)
                      -.+..+.|++.+.||+|.||+|-+|+...+++                           ..++..+||.+|++|+|+|||
T Consensus        92 ~~k~lNqy~l~~eiG~G~yGkVkLar~~~~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailKkl~H~nVV  171 (576)
T KOG0585|consen   92 DRKQLNQYELIKEIGSGQYGKVKLARDEVDGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILKKLHHPNVV  171 (576)
T ss_pred             cceehhheehhhhhcCCccceEEEEeecCCCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHHHhcCCcCee
Confidence            34456899999999999999999997554322                           246789999999999999999


Q ss_pred             eEEEEEEe--CCeeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcE
Q 039406          147 SLVGYYTA--GSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEA  216 (243)
Q Consensus       147 ~~~~~~~~--~~~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~  216 (243)
                      +|+++..+  .+.+|||+|||..|.+...-...  ..+.+.+++.|+.+++.||+|||.        ||+|+||+.+|++
T Consensus       172 ~LiEvLDDP~s~~~YlVley~s~G~v~w~p~d~--~els~~~Ar~ylrDvv~GLEYLH~QgiiHRDIKPsNLLl~~~g~V  249 (576)
T KOG0585|consen  172 KLIEVLDDPESDKLYLVLEYCSKGEVKWCPPDK--PELSEQQARKYLRDVVLGLEYLHYQGIIHRDIKPSNLLLSSDGTV  249 (576)
T ss_pred             EEEEeecCcccCceEEEEEeccCCccccCCCCc--ccccHHHHHHHHHHHHHHHHHHHhcCeeccccchhheEEcCCCcE
Confidence            99999875  45799999999998886433222  128999999999999999999975        6799999999999


Q ss_pred             EEeccCCceec
Q 039406          217 KVADFGLAKIA  227 (243)
Q Consensus       217 kl~DFG~a~~~  227 (243)
                      ||+|||.+-.+
T Consensus       250 KIsDFGVs~~~  260 (576)
T KOG0585|consen  250 KISDFGVSNEF  260 (576)
T ss_pred             Eeeccceeeec
Confidence            99999999877

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=99.92  E-value=2.1e-24  Score=186.10  Aligned_cols=128  Identities=20%  Similarity=0.247  Sum_probs=113.2

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVY  162 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  162 (243)
                      ++|+..+.||+|+||.||+|....+.+                ....+.+|+.+|.+++|+||+++++.+.+.+.+||||
T Consensus         1 ~~y~~~~~LG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~~~~~~iv~~~~~~~~~~~~~lv~   80 (363)
T cd05628           1 EDFESLKVIGRGAFGEVRLVQKKDTGHVYAMKILRKADMLEKEQVGHIRAERDILVEADSLWVVKMFYSFQDKLNLYLIM   80 (363)
T ss_pred             CCceEeEEEEeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHhCCCCCcceEEEEEecCCeEEEEE
Confidence            478999999999999999998765421                2345778999999999999999999999999999999


Q ss_pred             eccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          163 EFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       163 e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      |||++|+|.+++...+  .+++..++.++.|++.||.|||.        |++|||++.++.+||+|||+|+.+.
T Consensus        81 E~~~gg~L~~~l~~~~--~l~~~~~~~~~~qi~~aL~~lH~~givHrDlKp~NILi~~~~~vkL~DFGla~~~~  152 (363)
T cd05628          81 EFLPGGDMMTLLMKKD--TLTEEETQFYIAETVLAIDSIHQLGFIHRDIKPDNLLLDSKGHVKLSDFGLCTGLK  152 (363)
T ss_pred             cCCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCCeEecCCCHHHeEECCCCCEEEeeccCccccc
Confidence            9999999999997654  48999999999999999999987        5689999999999999999998654

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.92  E-value=1.9e-25  Score=192.69  Aligned_cols=140  Identities=23%  Similarity=0.327  Sum_probs=122.8

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch-------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEecc
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE-------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFV  165 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~-------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~  165 (243)
                      ..|....+||+|+.|.||.+....+.+             ..+-+++|+.+|+..+|+|||.+++.|..++.+|+|||||
T Consensus       273 ~~y~~~~kigqgaSG~vy~A~~~~~~~~VaiK~m~l~~Q~~keLilnEi~Vm~~~~H~NiVnfl~Sylv~deLWVVMEym  352 (550)
T KOG0578|consen  273 SKYTDFKKIGQGATGGVYVARKISTKQEVAIKRMDLRKQPKKELLLNEILVMRDLHHPNIVNFLDSYLVGDELWVVMEYM  352 (550)
T ss_pred             hhhcchhhhccccccceeeeeeccCCceEEEEEEEeccCCchhhhHHHHHHHHhccchHHHHHHHHhcccceeEEEEeec
Confidence            457888999999999999997554432             4567899999999999999999999999889999999999


Q ss_pred             CCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc------C--CCcEEECCCCcEEEeccCCceecCCCCceeeec
Q 039406          166 LNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD------D--LANILLDFKFEAKVADFGLAKIASDVNTHVSTR  237 (243)
Q Consensus       166 ~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~------~--~~NiLl~~~~~~kl~DFG~a~~~~~~~~~~~~~  237 (243)
                      +||+|.+.+...   .+++.++..+++++|+||+|||.      |  .+|||++.+|.+||+|||||..+..... ..++
T Consensus       353 ~ggsLTDvVt~~---~~~E~qIA~Icre~l~aL~fLH~~gIiHrDIKSDnILL~~~g~vKltDFGFcaqi~~~~~-KR~T  428 (550)
T KOG0578|consen  353 EGGSLTDVVTKT---RMTEGQIAAICREILQGLKFLHARGIIHRDIKSDNILLTMDGSVKLTDFGFCAQISEEQS-KRST  428 (550)
T ss_pred             CCCchhhhhhcc---cccHHHHHHHHHHHHHHHHHHHhcceeeeccccceeEeccCCcEEEeeeeeeeccccccC-cccc
Confidence            999999999654   38999999999999999999976      3  4899999999999999999999987765 3456


Q ss_pred             ccccc
Q 039406          238 VMGTF  242 (243)
Q Consensus       238 ~~GT~  242 (243)
                      ++|||
T Consensus       429 mVGTP  433 (550)
T KOG0578|consen  429 MVGTP  433 (550)
T ss_pred             ccCCC
Confidence            89997

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=99.92  E-value=1.7e-24  Score=187.24  Aligned_cols=148  Identities=18%  Similarity=0.181  Sum_probs=122.4

Q ss_pred             HHHHHHhCCCCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhcCCCccceEEEEEEeC
Q 039406           92 EELARATDGFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRVHHKHLVSLVGYYTAG  155 (243)
Q Consensus        92 ~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~  155 (243)
                      .++....++|.+.+.||+|+||.||+++.+.+.+                ....+.+|+.+++.++|+||+++++++.+.
T Consensus        36 ~~~~~~~~~y~i~~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~  115 (371)
T cd05622          36 RDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDD  115 (371)
T ss_pred             hhcCcchhhcEEEEEEeecCCeEEEEEEECCCCcEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcC
Confidence            3344455889999999999999999998765432                234467899999999999999999999999


Q ss_pred             CeeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceec
Q 039406          156 SQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIA  227 (243)
Q Consensus       156 ~~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~  227 (243)
                      +.+|+|||||.+|+|.+++...   .+++..++.++.|++.||.|||.        |++|||++.++.+||+|||+++.+
T Consensus       116 ~~~~lv~Ey~~gg~L~~~~~~~---~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDLkp~NIll~~~~~ikL~DfG~a~~~  192 (371)
T cd05622         116 RYLYMVMEYMPGGDLVNLMSNY---DVPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKM  192 (371)
T ss_pred             CEEEEEEcCCCCCcHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHHCCEEeCCCCHHHEEECCCCCEEEEeCCceeEc
Confidence            9999999999999999998643   37888899999999999999986        568999999999999999999987


Q ss_pred             CCCCceeeecccccc
Q 039406          228 SDVNTHVSTRVMGTF  242 (243)
Q Consensus       228 ~~~~~~~~~~~~GT~  242 (243)
                      ...........+||+
T Consensus       193 ~~~~~~~~~~~~gt~  207 (371)
T cd05622         193 NKEGMVRCDTAVGTP  207 (371)
T ss_pred             CcCCcccccCcccCc
Confidence            544332233455665

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=99.92  E-value=3.4e-24  Score=182.59  Aligned_cols=143  Identities=17%  Similarity=0.199  Sum_probs=119.0

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVY  162 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  162 (243)
                      ++|.+.+.||+|+||.||+++...+.+                ....+.+|+.++..++|+||+++++++.+.+..|+||
T Consensus         1 d~y~i~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~l~~~~~~~~~~~lv~   80 (331)
T cd05624           1 DDFEIIKVIGRGAFGEVAVVKMKHTERIYAMKILNKWEMLKRAETACFREERNVLVNGDCQWITTLHYAFQDENYLYLVM   80 (331)
T ss_pred             CCceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHHHhhHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEE
Confidence            578999999999999999998765432                2334678899999999999999999999999999999


Q ss_pred             eccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCcee
Q 039406          163 EFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNTHV  234 (243)
Q Consensus       163 e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~~~  234 (243)
                      ||+.+|+|.+++..... .+++..++.++.|++.||.|||.        |++|||++.++.+||+|||+++.+.......
T Consensus        81 Ey~~gg~L~~~l~~~~~-~l~~~~~~~~~~qi~~~L~~lH~~~iiHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~  159 (331)
T cd05624          81 DYYVGGDLLTLLSKFED-RLPEDMARFYIAEMVLAIHSIHQLHYVHRDIKPDNVLLDMNGHIRLADFGSCLKMNQDGTVQ  159 (331)
T ss_pred             eCCCCCcHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHCCeeeccCchHHEEEcCCCCEEEEeccceeeccCCCcee
Confidence            99999999999975433 48899999999999999999986        5689999999999999999998875543322


Q ss_pred             eecccccc
Q 039406          235 STRVMGTF  242 (243)
Q Consensus       235 ~~~~~GT~  242 (243)
                      ....+||+
T Consensus       160 ~~~~~gt~  167 (331)
T cd05624         160 SSVAVGTP  167 (331)
T ss_pred             eccccCCc
Confidence            23345654

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.92  E-value=2.5e-24  Score=185.51  Aligned_cols=128  Identities=20%  Similarity=0.253  Sum_probs=113.4

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVY  162 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  162 (243)
                      ++|...+.||+|+||.||+|+...+..                ....+.+|+.+|+.++|+||+++++++.+.+.+||||
T Consensus         1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~   80 (364)
T cd05599           1 DDFESIKVIGRGAFGEVRLVQKKDTGHIYAMKKLRKSEMLEKEQVAHVRAERDILAEADNPWVVKLYYSFQDENYLYLIM   80 (364)
T ss_pred             CCceEEEEEEecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCeEEEEE
Confidence            478999999999999999998765421                2345678999999999999999999999999999999


Q ss_pred             eccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          163 EFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       163 e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      |||.+|+|.+++...+  .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++.+.
T Consensus        81 E~~~~g~L~~~l~~~~--~l~~~~~~~~~~qi~~aL~~lH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~  152 (364)
T cd05599          81 EYLPGGDMMTLLMKKD--TFTEEETRFYIAETILAIDSIHKLGYIHRDIKPDNLLLDAKGHIKLSDFGLCTGLK  152 (364)
T ss_pred             CCCCCcHHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeEECCCCCEEEeecccceecc
Confidence            9999999999987554  48999999999999999999986        5689999999999999999998753

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=99.92  E-value=3.5e-24  Score=182.49  Aligned_cols=132  Identities=17%  Similarity=0.189  Sum_probs=114.5

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVY  162 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  162 (243)
                      ++|.+.+.||+|+||.||+++...+.+                ..+.+.+|+.+++.++|+||+++++++.+++.+|+||
T Consensus         1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (331)
T cd05597           1 DDFEILKVIGRGAFGEVAVVKMKNTGQVYAMKILNKWEMLKRAETACFREERDVLVNGDRRWITNLHYAFQDENNLYLVM   80 (331)
T ss_pred             CCceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCceEEEEecCCeEEEEE
Confidence            478999999999999999998765431                2345778999999999999999999999999999999


Q ss_pred             eccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCC
Q 039406          163 EFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVN  231 (243)
Q Consensus       163 e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~  231 (243)
                      ||+.+|+|.+++..... .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||++..+....
T Consensus        81 e~~~g~~L~~~l~~~~~-~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~  156 (331)
T cd05597          81 DYYVGGDLLTLLSKFED-RLPEDMARFYLAEMVLAIDSVHQLGYVHRDIKPDNVLLDKNGHIRLADFGSCLRLLADG  156 (331)
T ss_pred             ecCCCCcHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHhCCeEECCCCHHHEEECCCCCEEEEECCceeecCCCC
Confidence            99999999999975333 48899999999999999999986        4589999999999999999998765443

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=99.92  E-value=1.5e-24  Score=181.17  Aligned_cols=129  Identities=22%  Similarity=0.164  Sum_probs=118.3

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc----------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK----------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVY  162 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~----------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  162 (243)
                      ++|++++.||.|..|.||++.++.+.                +...+..-|-+||+.++||.+..||..|+.+...|+||
T Consensus        77 ~~f~llk~LG~GdiG~VyL~~l~~t~~~fAmKVmdK~~l~~rkKl~Ra~tE~eIL~~lDHPFlPTLYa~fet~~~~cl~m  156 (459)
T KOG0610|consen   77 RHFRLLKRLGCGDIGTVYLVELRGTNCLFAMKVMDKESLASRKKLKRAQTEREILSLLDHPFLPTLYASFETDKYSCLVM  156 (459)
T ss_pred             HHHHHHHHcCCCCceeEEEEEecCCCceEEEEEecHHHHhhhhHHHHHHHHHHHHHhcCCCccchhhheeeccceeEEEE
Confidence            56888899999999999999887752                23456677999999999999999999999999999999


Q ss_pred             eccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceec
Q 039406          163 EFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIA  227 (243)
Q Consensus       163 e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~  227 (243)
                      |||.||+|..+++++....+++..++.++.+++.||+|||-        ||+||||.++|+|.|+||.|+...
T Consensus       157 eyCpGGdL~~LrqkQp~~~fse~~aRFYaAEvl~ALEYLHmlGivYRDLKPENILvredGHIMLsDFDLS~~~  229 (459)
T KOG0610|consen  157 EYCPGGDLHSLRQKQPGKRFSESAARFYAAEVLLALEYLHMLGIVYRDLKPENILVREDGHIMLSDFDLSLRC  229 (459)
T ss_pred             ecCCCccHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHhhceeeccCCcceeEEecCCcEEeeeccccccC
Confidence            99999999999988877789999999999999999999997        789999999999999999999876

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=99.92  E-value=2.7e-24  Score=183.01  Aligned_cols=130  Identities=25%  Similarity=0.344  Sum_probs=115.0

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVY  162 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  162 (243)
                      ++|.+.+.||+|+||.||+|+.+.+.+                ..+.+.+|+.+|++++|+||+++++++.+++.+|+||
T Consensus        18 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~   97 (329)
T PTZ00263         18 SDFEMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQVQHVAQEKSILMELSHPFIVNMMCSFQDENRVYFLL   97 (329)
T ss_pred             hheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCcEEEEEEcCCEEEEEE
Confidence            679999999999999999998765432                2346788999999999999999999999999999999


Q ss_pred             eccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          163 EFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       163 e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      ||+.+++|.+++...+  .+++..+..++.|++.||.|||.        +++|||++.++.+||+|||+++...+.
T Consensus        98 e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~~  171 (329)
T PTZ00263         98 EFVVGGELFTHLRKAG--RFPNDVAKFYHAELVLAFEYLHSKDIIYRDLKPENLLLDNKGHVKVTDFGFAKKVPDR  171 (329)
T ss_pred             cCCCCChHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHEEECCCCCEEEeeccCceEcCCC
Confidence            9999999999987654  48888999999999999999986        468999999999999999999987543

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=99.92  E-value=4.4e-24  Score=181.88  Aligned_cols=129  Identities=22%  Similarity=0.252  Sum_probs=113.6

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVY  162 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  162 (243)
                      ++|.+.+.||+|+||.||+|+...+.+                ....+.+|+++|+.++|+||+++++++...+..||||
T Consensus         1 ~~y~~~~~ig~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~   80 (333)
T cd05600           1 KDFQILTQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDILTTTKSEWLVKLLYAFQDDEYLYLAM   80 (333)
T ss_pred             CCcEEEEEEeecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhCCCCCCccEEEEEEcCCEEEEEE
Confidence            468899999999999999998765421                2345778999999999999999999999999999999


Q ss_pred             eccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          163 EFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       163 e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      |||++++|.+++...+  .+.+..++.++.|++.||.|||.        +++|||++.++.+||+|||+++....
T Consensus        81 e~~~g~~L~~~l~~~~--~l~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kL~Dfg~a~~~~~  153 (333)
T cd05600          81 EYVPGGDFRTLLNNLG--VLSEDHARFYMAEMFEAVDALHELGYIHRDLKPENFLIDASGHIKLTDFGLSKGIVT  153 (333)
T ss_pred             eCCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEECCCCCEEEEeCcCCccccc
Confidence            9999999999997544  48899999999999999999986        45899999999999999999987643

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=99.92  E-value=4.2e-24  Score=182.71  Aligned_cols=129  Identities=25%  Similarity=0.300  Sum_probs=113.7

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc-----------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK-----------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLV  161 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~-----------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv  161 (243)
                      ++|.+.+.||+|+||.||+|.+....                 ...+.+.+|+.+|+.++||||+++++++.+.+.+|+|
T Consensus        30 ~~y~~~~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv  109 (340)
T PTZ00426         30 EDFNFIRTLGTGSFGRVILATYKNEDFPPVAIKRFEKSKIIKQKQVDHVFSERKILNYINHPFCVNLYGSFKDESYLYLV  109 (340)
T ss_pred             hhcEEEEEEeecCCeEEEEEEEECCCCeEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCCcceEEEEEeCCEEEEE
Confidence            67999999999999999999765432                 1234577899999999999999999999999999999


Q ss_pred             EeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          162 YEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       162 ~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      ||||.+|+|.+++....  .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++.+..
T Consensus       110 ~Ey~~~g~L~~~i~~~~--~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDLkp~NILl~~~~~ikL~DFG~a~~~~~  183 (340)
T PTZ00426        110 LEFVIGGEFFTFLRRNK--RFPNDVGCFYAAQIVLIFEYLQSLNIVYRDLKPENLLLDKDGFIKMTDFGFAKVVDT  183 (340)
T ss_pred             EeCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCeEccCCCHHHEEECCCCCEEEecCCCCeecCC
Confidence            99999999999997554  48899999999999999999976        46899999999999999999987653

>PHA03211 serine/threonine kinase US3; Provisional

Probab=99.92  E-value=6.5e-23  Score=181.37  Aligned_cols=129  Identities=19%  Similarity=0.226  Sum_probs=112.1

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch-------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccCCCCHH
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE-------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLV  171 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~-------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~g~L~  171 (243)
                      .+|.+.+.||+|+||.||++.+.....       ....+.+|+.+|++|+|+|||++++++...+..++|||++. ++|.
T Consensus       169 ~gy~i~~~Lg~G~~G~Vy~a~~~~~~~~vavK~~~~~~~~~E~~iL~~L~HpnIv~l~~~~~~~~~~~lv~e~~~-~~L~  247 (461)
T PHA03211        169 LGFAIHRALTPGSEGCVFESSHPDYPQRVVVKAGWYASSVHEARLLRRLSHPAVLALLDVRVVGGLTCLVLPKYR-SDLY  247 (461)
T ss_pred             CCeEEEEEEccCCCeEEEEEEECCCCCEEEEecccccCHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEEccC-CCHH
Confidence            469999999999999999998876532       23346789999999999999999999999999999999995 6888


Q ss_pred             HHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          172 FHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       172 ~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      +++..... .+++..++.++.|++.||.|||.        |++||||+.++.+||+|||+++.+..
T Consensus       248 ~~l~~~~~-~l~~~~~~~i~~qi~~aL~yLH~~gIvHrDLKP~NILl~~~~~vkL~DFGla~~~~~  312 (461)
T PHA03211        248 TYLGARLR-PLGLAQVTAVARQLLSAIDYIHGEGIIHRDIKTENVLVNGPEDICLGDFGAACFARG  312 (461)
T ss_pred             HHHHhcCC-CCCHHHHHHHHHHHHHHHHHHHHCCEEECcCCHHHEEECCCCCEEEcccCCceeccc
Confidence            88765433 58999999999999999999987        56899999999999999999987644

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.91  E-value=9.7e-24  Score=177.77  Aligned_cols=144  Identities=20%  Similarity=0.235  Sum_probs=124.2

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch--------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEec
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE--------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEF  164 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~--------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  164 (243)
                      ++|+...+||.|.-+.||+|+.....+              ..+.+.+|+..|..++||||++++..|..+..+|+||.|
T Consensus        26 ~~YeL~e~IG~G~sa~V~~A~c~p~~e~VAIK~inLEkc~~~ld~l~kE~~~msl~~HPNIv~~~~sFvv~~~LWvVmpf  105 (516)
T KOG0582|consen   26 KDYELQEVIGVGASAVVYLARCIPTNEVVAIKIINLEKCNNDLDALRKEVQTMSLIDHPNIVTYHCSFVVDSELWVVMPF  105 (516)
T ss_pred             cceeEEEEEeccceeEeeeeeecccCCEEEEEEeehhhhhhhHHHHHHHHHHhhhcCCCCcceEEEEEEecceeEEeehh
Confidence            789999999999999999998665432              467889999999999999999999999999999999999


Q ss_pred             cCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCceee-
Q 039406          165 VLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNTHVS-  235 (243)
Q Consensus       165 ~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~~~~-  235 (243)
                      |.+|++.++++..-...+++..+..|++++++||.|||+        |..||||+.+|.|||+|||++..+.+...... 
T Consensus       106 Ma~GS~ldIik~~~~~Gl~E~~Ia~iLre~LkaL~YLH~~G~IHRdvKAgnILi~~dG~VkLadFgvsa~l~~~G~R~~~  185 (516)
T KOG0582|consen  106 MAGGSLLDIIKTYYPDGLEEASIATILREVLKALDYLHQNGHIHRDVKAGNILIDSDGTVKLADFGVSASLFDSGDRQVT  185 (516)
T ss_pred             hcCCcHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHhcCceecccccccEEEcCCCcEEEcCceeeeeecccCceeeE
Confidence            999999999987655569999999999999999999976        45899999999999999999887765443322 


Q ss_pred             --ecccccc
Q 039406          236 --TRVMGTF  242 (243)
Q Consensus       236 --~~~~GT~  242 (243)
                        .+++||+
T Consensus       186 rf~tfvgtp  194 (516)
T KOG0582|consen  186 RFNTFVGTP  194 (516)
T ss_pred             eeccccCcc
Confidence              3356664

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=99.91  E-value=5.8e-24  Score=184.08  Aligned_cols=126  Identities=17%  Similarity=0.198  Sum_probs=111.2

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVY  162 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  162 (243)
                      ++|.+.+.||+|+||.||+++...+.+                ....+.+|+++|++++|+||+++++.+.+++.+|+||
T Consensus         1 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~   80 (376)
T cd05598           1 SMFVKIKTIGIGAFGEVCLVRKVDTNALYAMKTLRKADVLMRNQAAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVM   80 (376)
T ss_pred             CCceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEcHHHHHhhhhHHHHHHHHHHHHhCCCCCcceEEEEEEcCCEEEEEE
Confidence            368999999999999999998765432                2345778999999999999999999999999999999


Q ss_pred             eccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCcee
Q 039406          163 EFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKI  226 (243)
Q Consensus       163 e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~  226 (243)
                      |||++|+|.+++...+  .+++..++.++.||+.||.|||.        |++|||++.++.+||+|||+|..
T Consensus        81 E~~~~g~L~~~i~~~~--~~~~~~~~~~~~qi~~al~~lH~~~ivHrDlkp~Nill~~~~~ikL~DFG~a~~  150 (376)
T cd05598          81 DYIPGGDMMSLLIRLG--IFEEDLARFYIAELTCAIESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTG  150 (376)
T ss_pred             eCCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCCHHHEEECCCCCEEEEeCCCCcc
Confidence            9999999999997654  48888999999999999999976        56899999999999999999864

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=99.91  E-value=2.6e-24  Score=186.04  Aligned_cols=142  Identities=19%  Similarity=0.197  Sum_probs=117.7

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEE
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLV  161 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv  161 (243)
                      .++|.+.+.||+|+||.||+++...+..                ....+.+|+.+|+.++|+||+++++++.+.+.+|+|
T Consensus        42 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~h~~iv~~~~~~~~~~~~~lv  121 (370)
T cd05596          42 AEDFDVIKVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFEMIKRSDSAFFWEERDIMAHANSEWIVQLHYAFQDDKYLYMV  121 (370)
T ss_pred             HHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEEEEE
Confidence            4679999999999999999998765432                223467899999999999999999999999999999


Q ss_pred             EeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCce
Q 039406          162 YEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNTH  233 (243)
Q Consensus       162 ~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~~  233 (243)
                      ||||++|+|.+++...   .+++..+..++.|++.||.|||.        +++|||++.++.+||+|||+++.+......
T Consensus       122 ~Ey~~gg~L~~~l~~~---~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDLkp~NILl~~~~~~kL~DfG~~~~~~~~~~~  198 (370)
T cd05596         122 MEYMPGGDLVNLMSNY---DIPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMDANGMV  198 (370)
T ss_pred             EcCCCCCcHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEEcCCCCEEEEeccceeeccCCCcc
Confidence            9999999999998643   37888899999999999999986        568999999999999999999877543322


Q ss_pred             eeecccccc
Q 039406          234 VSTRVMGTF  242 (243)
Q Consensus       234 ~~~~~~GT~  242 (243)
                      .....+||+
T Consensus       199 ~~~~~~gt~  207 (370)
T cd05596         199 RCDTAVGTP  207 (370)
T ss_pred             cCCCCCCCc
Confidence            222345554

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=99.91  E-value=8.9e-24  Score=179.75  Aligned_cols=132  Identities=20%  Similarity=0.176  Sum_probs=115.3

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVY  162 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  162 (243)
                      ++|.+.+.||+|+||.||++....+.+                ..+.+.+|+.+++.++|+||+++++++.+.+.+|+||
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (330)
T cd05601           1 KDFDVKSLVGRGHFGEVQVVREKATGDIYAMKVMKKSVLLAQETVSFFEEERDILSISNSPWIPQLQYAFQDKDNLYLVM   80 (330)
T ss_pred             CCceEEEEEEeccCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceeeEEecCCeEEEEE
Confidence            478899999999999999998664422                3456788999999999999999999999999999999


Q ss_pred             eccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCC
Q 039406          163 EFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVN  231 (243)
Q Consensus       163 e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~  231 (243)
                      ||+++|+|.+++..... .+++..+..++.|++.||.|||.        +++|||++.++.+||+|||+++.+....
T Consensus        81 e~~~~~~L~~~l~~~~~-~l~~~~~~~~~~qi~~aL~~lH~~~i~H~Dlkp~NIll~~~~~~kL~Dfg~a~~~~~~~  156 (330)
T cd05601          81 EYQPGGDLLSLLNRYED-QFDEDMAQFYLAELVLAIHSVHQMGYVHRDIKPENVLIDRTGHIKLADFGSAARLTANK  156 (330)
T ss_pred             CCCCCCCHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHCCeEcccCchHheEECCCCCEEeccCCCCeECCCCC
Confidence            99999999999976533 58999999999999999999986        5689999999999999999998876543

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.91  E-value=5.9e-24  Score=184.12  Aligned_cols=127  Identities=20%  Similarity=0.223  Sum_probs=111.9

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVY  162 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  162 (243)
                      ++|.+.+.||+|+||.||++....+.+                ..+.+.+|+++|++++|+||+++++++.+.+.+||||
T Consensus         1 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~   80 (377)
T cd05629           1 EDFHTVKVIGKGAFGEVRLVQKKDTGKIYAMKTLLKSEMFKKDQLAHVKAERDVLAESDSPWVVSLYYSFQDAQYLYLIM   80 (377)
T ss_pred             CCceEeEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHHHHhHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCeeEEEE
Confidence            478899999999999999997654421                2356788999999999999999999999999999999


Q ss_pred             eccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceec
Q 039406          163 EFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIA  227 (243)
Q Consensus       163 e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~  227 (243)
                      |||++|+|.+++...+  .+++..++.++.|++.||.|||.        ||+|||++.++.+||+|||+++.+
T Consensus        81 E~~~gg~L~~~l~~~~--~~~~~~~~~~~~ql~~aL~~LH~~givHrDlkp~NIll~~~~~~kl~DfGla~~~  151 (377)
T cd05629          81 EFLPGGDLMTMLIKYD--TFSEDVTRFYMAECVLAIEAVHKLGFIHRDIKPDNILIDRGGHIKLSDFGLSTGF  151 (377)
T ss_pred             eCCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEECCCCCEEEeeccccccc
Confidence            9999999999987543  48899999999999999999987        568999999999999999999743

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.91  E-value=2.8e-25  Score=180.85  Aligned_cols=142  Identities=23%  Similarity=0.278  Sum_probs=121.2

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEE
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLV  161 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv  161 (243)
                      .++|..+++||+|+||+|.+|+.+.+.+                ...--+.|-++|+..+||.+..+.-.|...+++|+|
T Consensus       167 m~dFdfLKvLGkGTFGKVIL~rEKat~k~YAiKIlkKeviiakdEVAHTlTE~RVL~~~~HPFLt~LKYsFQt~drlCFV  246 (516)
T KOG0690|consen  167 MEDFDFLKVLGKGTFGKVILCREKATGKLYAIKILKKEVIIAKDEVAHTLTENRVLQNCRHPFLTSLKYSFQTQDRLCFV  246 (516)
T ss_pred             cchhhHHHHhcCCccceEEEEeecccCceeehhhhhhhheeehHHhhhhhhHHHHHHhccCcHHHHhhhhhccCceEEEE
Confidence            4788999999999999999998777654                112234577899999999999998889999999999


Q ss_pred             EeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCce
Q 039406          162 YEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNTH  233 (243)
Q Consensus       162 ~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~~  233 (243)
                      |||+.||.|.-++.+.+  .+++.+.+.+..+|+.||.|||.        |++|+|+|.+|++||+|||+++.-..... 
T Consensus       247 MeyanGGeLf~HLsrer--~FsE~RtRFYGaEIvsAL~YLHs~~ivYRDlKLENLlLDkDGHIKitDFGLCKE~I~~g~-  323 (516)
T KOG0690|consen  247 MEYANGGELFFHLSRER--VFSEDRTRFYGAEIVSALGYLHSRNIVYRDLKLENLLLDKDGHIKITDFGLCKEEIKYGD-  323 (516)
T ss_pred             EEEccCceEeeehhhhh--cccchhhhhhhHHHHHHhhhhhhCCeeeeechhhhheeccCCceEeeecccchhcccccc-
Confidence            99999999998886543  59999999999999999999998        56999999999999999999997554443 


Q ss_pred             eeecccccc
Q 039406          234 VSTRVMGTF  242 (243)
Q Consensus       234 ~~~~~~GT~  242 (243)
                      .+.++||||
T Consensus       324 t~kTFCGTP  332 (516)
T KOG0690|consen  324 TTKTFCGTP  332 (516)
T ss_pred             eeccccCCh
Confidence            345699997

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=99.91  E-value=2.7e-24  Score=186.85  Aligned_cols=138  Identities=28%  Similarity=0.447  Sum_probs=119.6

Q ss_pred             cccHHHHHHHhCCCCccceeeecCceEEEEEEecCC------------chhHHHHHHHHHHHHhcCCCccceEEEEEEeC
Q 039406           88 TFTYEELARATDGFSDANLLRQDGFGYVHRGVLPNG------------KEGEREFQAEVEIISRVHHKHLVSLVGYYTAG  155 (243)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~------------~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~  155 (243)
                      .++.++++...+.+.+...||+|.||+||+|++..+            .+..+.|++|+..|++-+|.||+-+.|+|...
T Consensus       381 s~s~~~WeIp~~ev~l~~rIGsGsFGtV~Rg~whGdVAVK~Lnv~~pt~~qlqaFKnEVa~lkkTRH~NIlLFMG~~~~p  460 (678)
T KOG0193|consen  381 SDSLEEWEIPPEEVLLGERIGSGSFGTVYRGRWHGDVAVKLLNVDDPTPEQLQAFKNEVAVLKKTRHENILLFMGACMNP  460 (678)
T ss_pred             CccccccccCHHHhhccceeccccccceeecccccceEEEEEecCCCCHHHHHHHHHHHHHHhhcchhhheeeehhhcCC
Confidence            344566666667778899999999999999986543            44789999999999999999999999999987


Q ss_pred             CeeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc------CC--CcEEECCCCcEEEeccCCceec
Q 039406          156 SQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD------DL--ANILLDFKFEAKVADFGLAKIA  227 (243)
Q Consensus       156 ~~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~------~~--~NiLl~~~~~~kl~DFG~a~~~  227 (243)
                      .. .||..+|+|-+|+.+++..+. .|.....+.|+.||++|+.|||.      |+  .|||+.+++.|||+||||+..-
T Consensus       461 ~~-AIiTqwCeGsSLY~hlHv~et-kfdm~~~idIAqQiaqGM~YLHAK~IIHrDLKSnNIFl~~~~kVkIgDFGLatvk  538 (678)
T KOG0193|consen  461 PL-AIITQWCEGSSLYTHLHVQET-KFDMNTTIDIAQQIAQGMDYLHAKNIIHRDLKSNNIFLHEDLKVKIGDFGLATVK  538 (678)
T ss_pred             ce-eeeehhccCchhhhhccchhh-hhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccccceEEccCCcEEEecccceeee
Confidence            77 999999999999999986654 48888999999999999999976      33  6999999999999999999764

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=99.91  E-value=2e-24  Score=177.76  Aligned_cols=131  Identities=21%  Similarity=0.257  Sum_probs=112.3

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch---------------hHHHHHHHHHHHHhcCCCc-cceEEEEEEeCC------
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE---------------GEREFQAEVEIISRVHHKH-LVSLVGYYTAGS------  156 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~---------------~~~~~~~E~~~l~~l~hp~-iv~~~~~~~~~~------  156 (243)
                      ..|..+++||+|+||+||+|+.+.+.+               .-....+|+.+|+.|+|+| ||.+++++.+.+      
T Consensus        11 ~~~~~~eklGeGtyg~Vykar~~~~g~~VALKkirl~~~~EG~P~taiREisllk~L~~~~~iv~L~dv~~~~~~~~~~~   90 (323)
T KOG0594|consen   11 FDYEKVEKLGEGTYGVVYKARSKRTGKFVALKKIRLEFEEEGVPSTAIREISLLKRLSHANHIVRLHDVIHTSNNHRGIG   90 (323)
T ss_pred             HHHHHHHHhCCCCceEEEEEEEecCCCEEEEEEEeccccccCCCchhhHHHHHHHHhCCCcceEEEEeeeeecccccccc
Confidence            557777889999999999998766542               2344589999999999999 999999998877      


Q ss_pred             eeEEEEeccCCCCHHHHhccCCC--CCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCcee
Q 039406          157 QRMLVYEFVLNNTLVFHLHGKGQ--PTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKI  226 (243)
Q Consensus       157 ~~~lv~e~~~~g~L~~~l~~~~~--~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~  226 (243)
                      .+++|+||++. +|.+++.....  ..++...++.++.||+.||+|||+        ||+||||+++|.+||+|||+|+.
T Consensus        91 ~l~lvfe~~d~-DL~~ymd~~~~~~~g~~~~~ik~~m~Qll~gl~~~H~~~IlHRDLKPQNlLi~~~G~lKlaDFGlAra  169 (323)
T KOG0594|consen   91 KLYLVFEFLDR-DLKKYMDSLPKKPQGLPPRLIKSFMRQLLRGLAFLHSHGILHRDLKPQNLLISSSGVLKLADFGLARA  169 (323)
T ss_pred             eEEEEEEeecc-cHHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHhCCeecccCCcceEEECCCCcEeeeccchHHH
Confidence            89999999966 99999976553  247778899999999999999976        67999999999999999999998


Q ss_pred             cCCC
Q 039406          227 ASDV  230 (243)
Q Consensus       227 ~~~~  230 (243)
                      +...
T Consensus       170 ~~ip  173 (323)
T KOG0594|consen  170 FSIP  173 (323)
T ss_pred             hcCC
Confidence            7643

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=1.1e-24  Score=195.84  Aligned_cols=130  Identities=25%  Similarity=0.429  Sum_probs=113.5

Q ss_pred             hCCCCccceeeecCceEEEEEEecC-------------------CchhHHHHHHHHHHHHhcCCCccceEEEEEEeCCee
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPN-------------------GKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQR  158 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~-------------------~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~  158 (243)
                      +.+.+..+.||+|+||+||+|+...                   +....++|.+|+++|..|+|+|||+|+|+|..++.+
T Consensus       485 r~~i~~~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a~~~~~~dF~REaeLla~l~H~nIVrLlGVC~~~~P~  564 (774)
T KOG1026|consen  485 RSDIVFKEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKAENQARQDFRREAELLAELQHPNIVRLLGVCREGDPL  564 (774)
T ss_pred             hhheeehhhhcCchhhhhhhhhccCCCCCccceehhHhhhcccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEccCCee
Confidence            3556677899999999999996332                   223678899999999999999999999999999999


Q ss_pred             EEEEeccCCCCHHHHhccCC--------CC----CCCHHHHHHHHHHHHHhhhHh------hcCCC--cEEECCCCcEEE
Q 039406          159 MLVYEFVLNNTLVFHLHGKG--------QP----TMDWPTRIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKV  218 (243)
Q Consensus       159 ~lv~e~~~~g~L~~~l~~~~--------~~----~l~~~~~~~i~~~i~~~l~~l------H~~~~--NiLl~~~~~~kl  218 (243)
                      |||+|||..|||.++|..+.        ..    .|+..+.+.|+.||+.|+.||      |||++  |+||.++..|||
T Consensus       565 ~MvFEYm~~GDL~eFLra~sP~a~~~~~g~~~~~~L~~~q~L~iA~QIAaGM~YLs~~~FVHRDLATRNCLVge~l~VKI  644 (774)
T KOG1026|consen  565 CMVFEYMDHGDLHEFLRARSPKADKLASGQDTPPPLSTSQFLHIATQIAAGMEYLSSHHFVHRDLATRNCLVGENLVVKI  644 (774)
T ss_pred             EEEEEecccccHHHHHHhhCCccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCcccccchhhhhceeccceEEEe
Confidence            99999999999999997532        12    278889999999999999998      89994  999999999999


Q ss_pred             eccCCceec
Q 039406          219 ADFGLAKIA  227 (243)
Q Consensus       219 ~DFG~a~~~  227 (243)
                      +|||++|-+
T Consensus       645 sDfGLsRdi  653 (774)
T KOG1026|consen  645 SDFGLSRDI  653 (774)
T ss_pred             cccccchhh
Confidence            999999864

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=99.91  E-value=3.1e-24  Score=179.57  Aligned_cols=129  Identities=26%  Similarity=0.303  Sum_probs=113.7

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVY  162 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  162 (243)
                      ++|.+.+.||+|+||.||+|....+.+                ..+.+.+|+.+|++++||||+++++++.+.+.+|+||
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~   80 (291)
T cd05612           1 DDLERIKTVGTGTFGRVHLVRDRISEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSHPFIIRLFWTEHDQRFLYMLM   80 (291)
T ss_pred             CCceeeeeeecCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCcHhhhHhhhccCCeEEEEE
Confidence            478899999999999999998764421                2345788999999999999999999999999999999


Q ss_pred             eccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          163 EFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       163 e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      ||+.+++|.+++...+  .+++..++.++.|++.||.|||.        +|+|||++.++.+||+|||+++.+..
T Consensus        81 e~~~~~~L~~~~~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~NIli~~~~~~kl~Dfg~~~~~~~  153 (291)
T cd05612          81 EYVPGGELFSYLRNSG--RFSNSTGLFYASEIVCALEYLHSKEIVYRDLKPENILLDKEGHIKLTDFGFAKKLRD  153 (291)
T ss_pred             eCCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHeEECCCCCEEEEecCcchhccC
Confidence            9999999999997654  48899999999999999999987        56899999999999999999987654

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.91  E-value=5.7e-24  Score=182.92  Aligned_cols=142  Identities=23%  Similarity=0.259  Sum_probs=122.8

Q ss_pred             HhCCCCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhcC-CCccceEEEEEEeCCeeE
Q 039406           97 ATDGFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRVH-HKHLVSLVGYYTAGSQRM  159 (243)
Q Consensus        97 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l~-hp~iv~~~~~~~~~~~~~  159 (243)
                      ..+.|.+.+.||+|.||.||+|+.+.+.+                ....+.+|+.+|+++. |||||.++++|++.+.++
T Consensus        33 ~~~~Y~l~~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~~~~~~~v~~Ev~il~~l~~hpniv~l~~~~e~~~~~~  112 (382)
T KOG0032|consen   33 IKEKYELGRELGRGQFGVVYLCREKSTGKEVACKVIPKRKLRGKEDREDVRREVAILQQLSGHPNIVQLKDAFEDPDSVY  112 (382)
T ss_pred             ccccEEehhhhCCCCceEEEEEEecCCCceeEEEEeehhhccccccHHHHHHHHHHHHhccCCCCEEEEEEEEEcCCeEE
Confidence            34678889999999999999998777432                2357899999999998 999999999999999999


Q ss_pred             EEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCC----CcEEEeccCCceec
Q 039406          160 LVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFK----FEAKVADFGLAKIA  227 (243)
Q Consensus       160 lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~----~~~kl~DFG~a~~~  227 (243)
                      +|||+|.||+|.+.|...   .+++..+..++.|++.++.|||.        ||+|+|+...    +.+|++|||+|...
T Consensus       113 lvmEL~~GGeLfd~i~~~---~~sE~da~~~~~~il~av~~lH~~gvvHrDlKpEN~L~~~~~~~~~~ik~~DFGla~~~  189 (382)
T KOG0032|consen  113 LVMELCEGGELFDRIVKK---HYSERDAAGIIRQILEAVKYLHSLGVVHRDLKPENLLLASKDEGSGRIKLIDFGLAKFI  189 (382)
T ss_pred             EEEEecCCchHHHHHHHc---cCCHHHHHHHHHHHHHHHHHHHhCCceeccCCHHHeeeccccCCCCcEEEeeCCCceEc
Confidence            999999999999999766   29999999999999999999987        6799999533    57999999999998


Q ss_pred             CCCCceeeeccccccC
Q 039406          228 SDVNTHVSTRVMGTFG  243 (243)
Q Consensus       228 ~~~~~~~~~~~~GT~G  243 (243)
                      ...  .....++||++
T Consensus       190 ~~~--~~~~~~~Gtp~  203 (382)
T KOG0032|consen  190 KPG--ERLHTIVGTPE  203 (382)
T ss_pred             cCC--ceEeeecCCcc
Confidence            772  23455889874

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=99.91  E-value=9.9e-24  Score=179.74  Aligned_cols=143  Identities=18%  Similarity=0.217  Sum_probs=118.5

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVY  162 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  162 (243)
                      ++|.+.+.||+|+||.||+++.+.+.+                ....+.+|+.++..++|+||+++++++.+.+.+|+||
T Consensus         1 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (332)
T cd05623           1 EDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDNQWITTLHYAFQDENNLYLVM   80 (332)
T ss_pred             CCceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEeHHHHHHhhHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCEEEEEE
Confidence            478899999999999999998765432                2234778899999999999999999999999999999


Q ss_pred             eccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCcee
Q 039406          163 EFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNTHV  234 (243)
Q Consensus       163 e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~~~  234 (243)
                      ||+.+|+|.+++..... .+++..++.++.|++.||.|||.        |++|||++.++.+||+|||+++.+.......
T Consensus        81 ey~~~g~L~~~l~~~~~-~l~~~~~~~~~~qi~~al~~lH~~~iiHrDlkp~Nili~~~~~~kL~DfG~a~~~~~~~~~~  159 (332)
T cd05623          81 DYYVGGDLLTLLSKFED-RLPEDMARFYLAEMVIAIDSVHQLHYVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGTVQ  159 (332)
T ss_pred             eccCCCcHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHEEECCCCCEEEeecchheecccCCcce
Confidence            99999999999975433 48899999999999999999976        5689999999999999999998765443322


Q ss_pred             eecccccc
Q 039406          235 STRVMGTF  242 (243)
Q Consensus       235 ~~~~~GT~  242 (243)
                      ....+||+
T Consensus       160 ~~~~~gt~  167 (332)
T cd05623         160 SSVAVGTP  167 (332)
T ss_pred             ecccccCc
Confidence            23345664

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=9.6e-25  Score=191.32  Aligned_cols=140  Identities=21%  Similarity=0.278  Sum_probs=121.0

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVY  162 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  162 (243)
                      +-|..++.||.|+.|.|-.|++..+.+                ....+.+||.+|+-|.||||+++|++|+++.++|+|+
T Consensus        12 GpwkLgkTLG~Gstg~vrlakh~~TGqlaaiKii~k~~~~s~s~~~~IerEIviMkLi~HpnVl~LydVwe~~~~lylvl   91 (786)
T KOG0588|consen   12 GPWKLGKTLGKGSTGCVRLAKHAETGQLAAIKIIPKRSELSSSQPAGIEREIVIMKLIEHPNVLRLYDVWENKQHLYLVL   91 (786)
T ss_pred             cceeccccccCCCCceehhhhcccccceeEEEeeccccccccccccchhhhhHHHHHhcCCCeeeeeeeeccCceEEEEE
Confidence            457888999999999999998766543                2456889999999999999999999999999999999


Q ss_pred             eccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCcee
Q 039406          163 EFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNTHV  234 (243)
Q Consensus       163 e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~~~  234 (243)
                      ||+++|.|++++..++  .+.+.++..++.||+.|+.|||.        ||+|+|||.++++||+|||+|.+-..+.-  
T Consensus        92 Eyv~gGELFdylv~kG--~l~e~eaa~ff~QIi~gv~yCH~~~icHRDLKpENlLLd~~~nIKIADFGMAsLe~~gkl--  167 (786)
T KOG0588|consen   92 EYVPGGELFDYLVRKG--PLPEREAAHFFRQILDGVSYCHAFNICHRDLKPENLLLDVKNNIKIADFGMASLEVPGKL--  167 (786)
T ss_pred             EecCCchhHHHHHhhC--CCCCHHHHHHHHHHHHHHHHHhhhcceeccCCchhhhhhcccCEeeeccceeecccCCcc--
Confidence            9999999999998776  48999999999999999999976        67999999999999999999988655432  


Q ss_pred             eecccccc
Q 039406          235 STRVMGTF  242 (243)
Q Consensus       235 ~~~~~GT~  242 (243)
                      -.+.||+|
T Consensus       168 LeTSCGSP  175 (786)
T KOG0588|consen  168 LETSCGSP  175 (786)
T ss_pred             ccccCCCc
Confidence            22356765

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=99.91  E-value=1.1e-23  Score=178.75  Aligned_cols=121  Identities=24%  Similarity=0.303  Sum_probs=106.6

Q ss_pred             ceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccCCC
Q 039406          105 NLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNN  168 (243)
Q Consensus       105 ~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~g  168 (243)
                      +.||+|+||.||+++.+.+.+                ....+.+|+.+|++++|+||+++++++...+.+|+||||+.++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~~~~~   80 (323)
T cd05571           1 KLLGKGTFGKVILVREKATGKYYAMKILKKEVIIAKDEVAHTLTESRVLQNTRHPFLTALKYSFQTHDRLCFVMEYANGG   80 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCCEEEEEEcCCEEEEEEeCCCCC
Confidence            479999999999998765421                2345778999999999999999999999999999999999999


Q ss_pred             CHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceec
Q 039406          169 TLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIA  227 (243)
Q Consensus       169 ~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~  227 (243)
                      +|.+++...+  .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++..
T Consensus        81 ~L~~~l~~~~--~~~~~~~~~~~~qi~~~L~~lH~~~ivHrDlkp~NIll~~~~~~kl~DfG~a~~~  145 (323)
T cd05571          81 ELFFHLSRER--VFSEDRARFYGAEIVSALGYLHSCDVVYRDLKLENLMLDKDGHIKITDFGLCKEG  145 (323)
T ss_pred             cHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHhCCeEeCCCCHHHEEECCCCCEEEeeCCCCccc
Confidence            9999887544  58999999999999999999987        568999999999999999999864

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>PHA03212 serine/threonine kinase US3; Provisional

Probab=99.91  E-value=9.4e-24  Score=183.73  Aligned_cols=142  Identities=20%  Similarity=0.280  Sum_probs=117.5

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCch-------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccCCCCH
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGKE-------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTL  170 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~-------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~g~L  170 (243)
                      .++|.+.+.||+|+||.||+|.+..+.+       ....+.+|+.+|++|+||||++++++|..+...++|||++. ++|
T Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~d~~~~~~vaiK~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~lv~e~~~-~~L  169 (391)
T PHA03212         91 KAGFSILETFTPGAEGFAFACIDNKTCEHVVIKAGQRGGTATEAHILRAINHPSIIQLKGTFTYNKFTCLILPRYK-TDL  169 (391)
T ss_pred             cCCcEEEEEEcCCCCeEEEEEEECCCCCEEEEechhhhhhHHHHHHHHhCCCCCCCCEeEEEEECCeeEEEEecCC-CCH
Confidence            3679999999999999999998766543       24567899999999999999999999999999999999995 688


Q ss_pred             HHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCceeeecccccc
Q 039406          171 VFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNTHVSTRVMGTF  242 (243)
Q Consensus       171 ~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~~~~~~~~GT~  242 (243)
                      ..++....  .+++..++.++.|++.||.|||.        ||+|||++.++.+||+|||+|+.............+||+
T Consensus       170 ~~~l~~~~--~l~~~~~~~i~~qi~~aL~ylH~~~IvHrDiKP~NIll~~~~~vkL~DFG~a~~~~~~~~~~~~~~~gt~  247 (391)
T PHA03212        170 YCYLAAKR--NIAICDILAIERSVLRAIQYLHENRIIHRDIKAENIFINHPGDVCLGDFGAACFPVDINANKYYGWAGTI  247 (391)
T ss_pred             HHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChHhEEEcCCCCEEEEeCCcccccccccccccccccCcc
Confidence            88886544  48899999999999999999976        568999999999999999999865433222222345654

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=99.91  E-value=1e-23  Score=179.55  Aligned_cols=141  Identities=21%  Similarity=0.248  Sum_probs=115.5

Q ss_pred             CCCccceeeecCceEEEEEEecCCc--------------------hhHHHHHHHHHHHHhc-CCCccceEEEEEEeCCee
Q 039406          100 GFSDANLLRQDGFGYVHRGVLPNGK--------------------EGEREFQAEVEIISRV-HHKHLVSLVGYYTAGSQR  158 (243)
Q Consensus       100 ~~~~~~~lg~G~~g~V~~~~~~~~~--------------------~~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~~  158 (243)
                      +|++.+.||+|+||.||+++...+.                    ...+.+.+|+.+|+.+ +|+||+++++++..++.+
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~   80 (332)
T cd05614           1 NFELLKVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQSPFLVTLHYAFQTEAKL   80 (332)
T ss_pred             CceEEEEEeecCCEEEEEEEEcccCCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHHhccCCCCcccEEEEEecCCEE
Confidence            4888999999999999998753211                    1234567899999999 599999999999999999


Q ss_pred             EEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          159 MLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       159 ~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      |+|||||.+|+|.+++..+.  .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++.+...
T Consensus        81 ~lv~e~~~~g~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~ivHrDlkp~Nili~~~~~~kl~DfG~~~~~~~~  158 (332)
T cd05614          81 HLILDYVSGGEMFTHLYQRD--NFSEDEVRFYSGEIILALEHLHKLGIVYRDIKLENILLDSEGHVVLTDFGLSKEFLSE  158 (332)
T ss_pred             EEEEeCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCcEecCCCHHHeEECCCCCEEEeeCcCCcccccc
Confidence            99999999999999986544  48899999999999999999986        468999999999999999999876443


Q ss_pred             Cceeeecccccc
Q 039406          231 NTHVSTRVMGTF  242 (243)
Q Consensus       231 ~~~~~~~~~GT~  242 (243)
                      ........+||+
T Consensus       159 ~~~~~~~~~gt~  170 (332)
T cd05614         159 EKERTYSFCGTI  170 (332)
T ss_pred             CCCccccccCCc
Confidence            332333345654

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=99.91  E-value=6.7e-26  Score=182.86  Aligned_cols=140  Identities=27%  Similarity=0.397  Sum_probs=122.1

Q ss_pred             CCccceeeecCceEEEEEEecCCch-----------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccCCCC
Q 039406          101 FSDANLLRQDGFGYVHRGVLPNGKE-----------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNT  169 (243)
Q Consensus       101 ~~~~~~lg~G~~g~V~~~~~~~~~~-----------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~g~  169 (243)
                      |.++.+||+|+||-||++.++.+..           .++.+.+||.+|++++.+++|++|+.|.....+|||||||..|+
T Consensus        35 FDi~~KLGEGSYGSV~KAIH~EsG~v~AIK~VPV~sDLQEIIKEISIMQQC~S~yVVKYYGSYFK~sDLWIVMEYCGAGS  114 (502)
T KOG0574|consen   35 FDIVGKLGEGSYGSVHKAIHRESGHVLAIKKVPVDTDLQEIIKEISIMQQCKSKYVVKYYGSYFKHSDLWIVMEYCGAGS  114 (502)
T ss_pred             HHHHHHhcCCcchHHHHHHHhccCcEEEEEecCccchHHHHHHHHHHHHHcCCchhhhhhhhhccCCceEeehhhcCCCc
Confidence            5667899999999999998877643           67889999999999999999999999999999999999999999


Q ss_pred             HHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc------CC--CcEEECCCCcEEEeccCCceecCCCCceeeeccccc
Q 039406          170 LVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD------DL--ANILLDFKFEAKVADFGLAKIASDVNTHVSTRVMGT  241 (243)
Q Consensus       170 L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~------~~--~NiLl~~~~~~kl~DFG~a~~~~~~~~~~~~~~~GT  241 (243)
                      +.+++..+.+ .+.+.++..++...++||.|||.      |+  .|||++.+|..||+|||+|-.+.+.-.. ..++.||
T Consensus       115 iSDI~R~R~K-~L~E~EIs~iL~~TLKGL~YLH~~~KIHRDIKAGNILLNT~G~AKLADFGVAGQLTDTMAK-RNTVIGT  192 (502)
T KOG0574|consen  115 ISDIMRARRK-PLSEQEISAVLRDTLKGLQYLHDLKKIHRDIKAGNILLNTDGIAKLADFGVAGQLTDTMAK-RNTVIGT  192 (502)
T ss_pred             HHHHHHHhcC-CccHHHHHHHHHHHHhHHHHHHHHHHHHhhcccccEEEcccchhhhhhccccchhhhhHHh-hCccccC
Confidence            9999986654 69999999999999999999964      44  7999999999999999999988764332 3357888


Q ss_pred             c
Q 039406          242 F  242 (243)
Q Consensus       242 ~  242 (243)
                      |
T Consensus       193 P  193 (502)
T KOG0574|consen  193 P  193 (502)
T ss_pred             c
Confidence            6

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=99.91  E-value=1.1e-23  Score=182.87  Aligned_cols=126  Identities=17%  Similarity=0.191  Sum_probs=111.4

Q ss_pred             CCCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEe
Q 039406          100 GFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYE  163 (243)
Q Consensus       100 ~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e  163 (243)
                      .|..++.||+|+||.||+|+...+.+                ....+.+|+.+|++++|+||+++++++.+.+.+|+|||
T Consensus         2 ~f~~~~~LG~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~l~~~~~~~~~~~lv~E   81 (381)
T cd05626           2 MFVKIKTLGIGAFGEVCLACKVDTHALYAMKTLRKKDVLNRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMD   81 (381)
T ss_pred             CceEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhcCCCCeeeeEEEEecCCEEEEEEe
Confidence            58889999999999999998655432                23457889999999999999999999999999999999


Q ss_pred             ccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceec
Q 039406          164 FVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIA  227 (243)
Q Consensus       164 ~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~  227 (243)
                      ||.+|+|.+++...+  .+++..++.++.|++.||.|||.        ||+||||+.++++||+|||+++.+
T Consensus        82 ~~~gg~L~~~l~~~~--~~~e~~~~~~~~qi~~aL~~LH~~givHrDlKp~Nili~~~~~~kL~DFGl~~~~  151 (381)
T cd05626          82 YIPGGDMMSLLIRME--VFPEVLARFYIAELTLAIESVHKMGFIHRDIKPDNILIDLDGHIKLTDFGLCTGF  151 (381)
T ss_pred             cCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCCeeecCCcHHHEEECCCCCEEEeeCcCCccc
Confidence            999999999987544  48889999999999999999976        568999999999999999998754

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=99.91  E-value=1.8e-23  Score=174.36  Aligned_cols=130  Identities=28%  Similarity=0.362  Sum_probs=112.2

Q ss_pred             CCCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEe
Q 039406          100 GFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYE  163 (243)
Q Consensus       100 ~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e  163 (243)
                      .|...+.||+|+||.||++....+.+                ....+.+|+.+|++++|+||+++++++.+.+.+++|||
T Consensus         1 ~f~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~iv~~~~~~~~~~~~~lv~e   80 (285)
T cd05631           1 TFRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKRILEKVNSRFVVSLAYAYETKDALCLVLT   80 (285)
T ss_pred             CceEEEEEecCCCEEEEEEEEecCCceEEEEEeeHhhhhhhhhHHHHHHHHHHHHhcCCCcEEEEEEEEccCCeEEEEEE
Confidence            37788999999999999998654321                22356789999999999999999999999999999999


Q ss_pred             ccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          164 FVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       164 ~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      ||.+|+|.+++.......+++..++.++.|++.||.|||.        +|+|||++.++.+||+|||+++.+..
T Consensus        81 ~~~~g~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~iiH~dikp~Nill~~~~~~kl~Dfg~~~~~~~  154 (285)
T cd05631          81 IMNGGDLKFHIYNMGNPGFDEQRAIFYAAELCCGLEDLQRERIVYRDLKPENILLDDRGHIRISDLGLAVQIPE  154 (285)
T ss_pred             ecCCCcHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhCCEEeCCCCHHHEEECCCCCEEEeeCCCcEEcCC
Confidence            9999999988765444458999999999999999999987        46899999999999999999988643

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.91  E-value=1.3e-24  Score=163.80  Aligned_cols=131  Identities=21%  Similarity=0.287  Sum_probs=113.0

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch---------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEe
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE---------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYE  163 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~---------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e  163 (243)
                      .+|...++||+|+||+||+++.+++.+               .-...++||.+|+.++|.|||+++++...++.+-+|+|
T Consensus         2 ~~ydkmekigegtygtvfkarn~~t~eivalkrvrlddddegvpssalreicllkelkhknivrl~dvlhsdkkltlvfe   81 (292)
T KOG0662|consen    2 QKYDKMEKIGEGTYGTVFKARNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFE   81 (292)
T ss_pred             cchHHHHhhcCCcceeeEecccCCccceEEEEEEeccCCCCCCcHHHHHHHHHHHHhhhcceeehhhhhccCceeEEeHH
Confidence            356778899999999999998665533               34567899999999999999999999999999999999


Q ss_pred             ccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCC
Q 039406          164 FVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVN  231 (243)
Q Consensus       164 ~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~  231 (243)
                      ||.. +|.++...... .++...++.++.|++.||.|||.        ||.|+||+.+|++||+|||+|+.++-.-
T Consensus        82 ~cdq-dlkkyfdslng-~~d~~~~rsfmlqllrgl~fchshnvlhrdlkpqnllin~ngelkladfglarafgipv  155 (292)
T KOG0662|consen   82 FCDQ-DLKKYFDSLNG-DLDPEIVRSFMLQLLRGLGFCHSHNVLHRDLKPQNLLINRNGELKLADFGLARAFGIPV  155 (292)
T ss_pred             HhhH-HHHHHHHhcCC-cCCHHHHHHHHHHHHhhhhhhhhhhhhhccCCcceEEeccCCcEEecccchhhhcCCce
Confidence            9965 88888765443 48888999999999999999976        6799999999999999999999886543

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=99.91  E-value=1.5e-23  Score=181.99  Aligned_cols=126  Identities=19%  Similarity=0.194  Sum_probs=111.1

Q ss_pred             CCCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEe
Q 039406          100 GFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYE  163 (243)
Q Consensus       100 ~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e  163 (243)
                      .|..++.||+|+||.||+|+...+.+                ....+.+|+.+|++++|+||+++++.+.+++.+|+|||
T Consensus         2 ~f~~~~~LG~G~~g~Vy~a~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~~~h~~iv~~~~~~~~~~~~~lv~E   81 (382)
T cd05625           2 MFVKIKTLGIGAFGEVCLARKVDTKALYAMKTLRKKDVLLRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFVMD   81 (382)
T ss_pred             CcEEEEEEEeCCCEEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhCCCCcCCeEEEEEEeCCEEEEEEe
Confidence            58889999999999999998755432                23467889999999999999999999999999999999


Q ss_pred             ccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceec
Q 039406          164 FVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIA  227 (243)
Q Consensus       164 ~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~  227 (243)
                      ||++|+|.+++...+  .+++..++.++.|++.||.|||.        ||+|||++.++.+||+|||+|+.+
T Consensus        82 ~~~gg~L~~~l~~~~--~~~e~~~~~~~~qi~~al~~lH~~~ivHrDlKp~NILl~~~g~~kL~DFGla~~~  151 (382)
T cd05625          82 YIPGGDMMSLLIRMG--IFPEDLARFYIAELTCAVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGF  151 (382)
T ss_pred             CCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEEeECCCCccc
Confidence            999999999986543  48888999999999999999976        568999999999999999998643

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=99.91  E-value=9.4e-25  Score=174.05  Aligned_cols=144  Identities=24%  Similarity=0.306  Sum_probs=123.6

Q ss_pred             HHhCCCCccceeeecCceEEEEEEecCCc---------------------hhHHHHHHHHHHHHhc-CCCccceEEEEEE
Q 039406           96 RATDGFSDANLLRQDGFGYVHRGVLPNGK---------------------EGEREFQAEVEIISRV-HHKHLVSLVGYYT  153 (243)
Q Consensus        96 ~~~~~~~~~~~lg~G~~g~V~~~~~~~~~---------------------~~~~~~~~E~~~l~~l-~hp~iv~~~~~~~  153 (243)
                      .....|...+.||+|..+.|-+|.++.+.                     +..+.-..|+.||+++ .||+|+++.++|+
T Consensus        14 ~fy~~y~pkeilgrgvss~vrRci~k~t~~e~a~kii~~~at~~~~e~~~~~~EaT~~Ev~ILRqv~GHP~II~l~D~ye   93 (411)
T KOG0599|consen   14 GFYAKYEPKEILGRGVSSVVRRCIHKETGKEFAVKIIDVTATTESGETPYEMREATRQEISILRQVMGHPYIIDLQDVYE   93 (411)
T ss_pred             hHHhhcChHHHhcccchhhhhhhhhcccccceeEEEEEecccccCCccHHHHHHHHHHHHHHHHHhcCCCcEEEeeeecc
Confidence            34467888889999999888888665442                     1456678899999998 6999999999999


Q ss_pred             eCCeeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCce
Q 039406          154 AGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAK  225 (243)
Q Consensus       154 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~  225 (243)
                      .+..+++|+|+|+.|.|+|++...-  .+++...+.|++|++.|+.|||.        ||+|||+|++.++||+|||+|.
T Consensus        94 s~sF~FlVFdl~prGELFDyLts~V--tlSEK~tR~iMrqlfegVeylHa~~IVHRDLKpENILlddn~~i~isDFGFa~  171 (411)
T KOG0599|consen   94 SDAFVFLVFDLMPRGELFDYLTSKV--TLSEKETRRIMRQLFEGVEYLHARNIVHRDLKPENILLDDNMNIKISDFGFAC  171 (411)
T ss_pred             CcchhhhhhhhcccchHHHHhhhhe--eecHHHHHHHHHHHHHHHHHHHHhhhhhcccChhheeeccccceEEeccceee
Confidence            9999999999999999999997644  69999999999999999999975        5799999999999999999999


Q ss_pred             ecCCCCceeeeccccccC
Q 039406          226 IASDVNTHVSTRVMGTFG  243 (243)
Q Consensus       226 ~~~~~~~~~~~~~~GT~G  243 (243)
                      .+.....  -..+|||||
T Consensus       172 ~l~~Gek--LrelCGTPg  187 (411)
T KOG0599|consen  172 QLEPGEK--LRELCGTPG  187 (411)
T ss_pred             ccCCchh--HHHhcCCCc
Confidence            9876654  345899998

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=99.91  E-value=2.1e-23  Score=177.48  Aligned_cols=122  Identities=25%  Similarity=0.315  Sum_probs=107.1

Q ss_pred             ceeeecCceEEEEEEecCCc----------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccCCC
Q 039406          105 NLLRQDGFGYVHRGVLPNGK----------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNN  168 (243)
Q Consensus       105 ~~lg~G~~g~V~~~~~~~~~----------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~g  168 (243)
                      +.||+|+||.||++....+.                .....+.+|+.+|+.++|+||+++++++...+.+|+||||+++|
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~Ey~~~g   80 (328)
T cd05593           1 KLLGKGTFGKVILVREKASGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNTRHPFLTSLKYSFQTKDRLCFVMEYVNGG   80 (328)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCEEEEEEeCCCCC
Confidence            47999999999999865432                13456788999999999999999999999999999999999999


Q ss_pred             CHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          169 TLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       169 ~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      +|.+++....  .+++..++.++.|++.||.|||.        |++|||++.++.+||+|||+++...
T Consensus        81 ~L~~~l~~~~--~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDikp~NIll~~~~~~kL~DfG~~~~~~  146 (328)
T cd05593          81 ELFFHLSRER--VFSEDRTRFYGAEIVSALDYLHSGKIVYRDLKLENLMLDKDGHIKITDFGLCKEGI  146 (328)
T ss_pred             CHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCCeEecccCHHHeEECCCCcEEEecCcCCccCC
Confidence            9998886543  48999999999999999999987        5689999999999999999998643

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=99.91  E-value=5.7e-24  Score=179.48  Aligned_cols=144  Identities=27%  Similarity=0.333  Sum_probs=127.6

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEE
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLV  161 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv  161 (243)
                      .+.|..-++||+|+||.||-|..+.+.+                .....++|-.+|.+++.++||.+--.|++.+.+|+|
T Consensus       184 ~n~F~~~RvlGkGGFGEV~acqvraTGKMYAcKkL~KKRiKkr~ge~maLnEk~iL~kV~s~FiVslaYAfeTkd~LClV  263 (591)
T KOG0986|consen  184 KNTFRVYRVLGKGGFGEVCACQVRATGKMYACKKLDKKRIKKRKGETMALNEKQILEKVSSPFIVSLAYAFETKDALCLV  263 (591)
T ss_pred             ccceeeeEEEecccccceeEEEEecchhhHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhccCcEEEEeeeecCCCceEEE
Confidence            3678999999999999999998877654                123356789999999999999999999999999999


Q ss_pred             EeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCce
Q 039406          162 YEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNTH  233 (243)
Q Consensus       162 ~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~~  233 (243)
                      |..|.||+|.-+|.+.+...+++.+++.++.+|+.||++||+        ||+|||+|+.|+++|+|+|||..+.+....
T Consensus       264 LtlMNGGDLkfHiyn~g~~gF~e~ra~FYAAEi~cGLehlH~~~iVYRDLKPeNILLDd~GhvRISDLGLAvei~~g~~~  343 (591)
T KOG0986|consen  264 LTLMNGGDLKFHIYNHGNPGFDEQRARFYAAEIICGLEHLHRRRIVYRDLKPENILLDDHGHVRISDLGLAVEIPEGKPI  343 (591)
T ss_pred             EEeecCCceeEEeeccCCCCCchHHHHHHHHHHHhhHHHHHhcceeeccCChhheeeccCCCeEeeccceEEecCCCCcc
Confidence            999999999999998888889999999999999999999998        789999999999999999999999776542


Q ss_pred             eeeccccccC
Q 039406          234 VSTRVMGTFG  243 (243)
Q Consensus       234 ~~~~~~GT~G  243 (243)
                        ...+||.|
T Consensus       344 --~~rvGT~G  351 (591)
T KOG0986|consen  344 --RGRVGTVG  351 (591)
T ss_pred             --ccccCccc
Confidence              22488887

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=99.91  E-value=2e-23  Score=179.81  Aligned_cols=128  Identities=20%  Similarity=0.263  Sum_probs=112.9

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVY  162 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  162 (243)
                      ++|...+.||+|+||.||++..+.+.+                ....+.+|+.+|..++|+||+++++.+.+.+.+||||
T Consensus         1 ~~f~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~~~lv~   80 (360)
T cd05627           1 DDFESLKVIGRGAFGEVRLVQKKDTGHIYAMKILRKADMLEKEQVAHIRAERDILVEADGAWVVKMFYSFQDKRNLYLIM   80 (360)
T ss_pred             CCceEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEE
Confidence            478899999999999999998765421                2456778999999999999999999999999999999


Q ss_pred             eccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          163 EFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       163 e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      |||.+|+|.+++...+  .+++..++.++.|++.||.|||.        |++|||++.++.+||+|||+++.+.
T Consensus        81 E~~~gg~L~~~l~~~~--~l~~~~~~~~~~qi~~~L~~lH~~givHrDLkp~NIli~~~~~vkL~DfG~~~~~~  152 (360)
T cd05627          81 EFLPGGDMMTLLMKKD--TLSEEATQFYIAETVLAIDAIHQLGFIHRDIKPDNLLLDAKGHVKLSDFGLCTGLK  152 (360)
T ss_pred             eCCCCccHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCeEccCCCHHHEEECCCCCEEEeeccCCcccc
Confidence            9999999999987554  48999999999999999999976        5689999999999999999998653

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=99.91  E-value=4e-23  Score=175.48  Aligned_cols=122  Identities=24%  Similarity=0.286  Sum_probs=106.4

Q ss_pred             ceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccCCC
Q 039406          105 NLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNN  168 (243)
Q Consensus       105 ~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~g  168 (243)
                      +.||+|+||.||++....+..                ....+.+|+++++.++|+||+++++++...+.+||||||+.+|
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~~   80 (325)
T cd05594           1 KLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFVMEYANGG   80 (325)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCCceEEEEEcCCEEEEEEeCCCCC
Confidence            479999999999998654321                2355678999999999999999999999999999999999999


Q ss_pred             CHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc---------CCCcEEECCCCcEEEeccCCceecC
Q 039406          169 TLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD---------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       169 ~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~---------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      +|.+++....  .+++..++.++.|++.||.|||.         +++|||++.++.+||+|||+++...
T Consensus        81 ~L~~~l~~~~--~l~~~~~~~~~~qi~~aL~~lH~~~~ivHrDikp~NIll~~~~~~kL~Dfg~~~~~~  147 (325)
T cd05594          81 ELFFHLSRER--VFSEDRARFYGAEIVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGI  147 (325)
T ss_pred             cHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhcCCEEecCCCCCeEEECCCCCEEEecCCCCeecC
Confidence            9998886544  48999999999999999999995         4699999999999999999998653

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>PHA03210 serine/threonine kinase US3; Provisional

Probab=99.90  E-value=8.6e-23  Score=182.95  Aligned_cols=146  Identities=16%  Similarity=0.190  Sum_probs=113.5

Q ss_pred             HHhCCCCccceeeecCceEEEEEEecCCc-------------------------------hhHHHHHHHHHHHHhcCCCc
Q 039406           96 RATDGFSDANLLRQDGFGYVHRGVLPNGK-------------------------------EGEREFQAEVEIISRVHHKH  144 (243)
Q Consensus        96 ~~~~~~~~~~~lg~G~~g~V~~~~~~~~~-------------------------------~~~~~~~~E~~~l~~l~hp~  144 (243)
                      ...++|.+.+.||+|+||.||+|.++...                               .....+.+|+.+|++++|+|
T Consensus       145 ~~~~~Y~ii~~LG~G~fG~Vyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~Ei~il~~l~Hpn  224 (501)
T PHA03210        145 EFLAHFRVIDDLPAGAFGKIFICALRASTEEAEARRGVNSTNQGKPKCERLIAKRVKAGSRAAIQLENEILALGRLNHEN  224 (501)
T ss_pred             hhhhccEEEeEecCCCCcceEEEEEeccchhhhhhhccccccccchhhhhhHhHHhhcchHHHHHHHHHHHHHHhCCCCC
Confidence            34578999999999999999998643210                               12345788999999999999


Q ss_pred             cceEEEEEEeCCeeEEEEeccCCCCHHHHhccCC---CCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCC
Q 039406          145 LVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKG---QPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFK  213 (243)
Q Consensus       145 iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~---~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~  213 (243)
                      ||++++++...+..|+|||++. ++|.+++....   .....+..++.++.|++.||.|||.        |++|||++.+
T Consensus       225 Iv~l~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~~i~~ql~~aL~yLH~~gIiHrDLKP~NILl~~~  303 (501)
T PHA03210        225 ILKIEEILRSEANTYMITQKYD-FDLYSFMYDEAFDWKDRPLLKQTRAIMKQLLCAVEYIHDKKLIHRDIKLENIFLNCD  303 (501)
T ss_pred             cCcEeEEEEECCeeEEEEeccc-cCHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCC
Confidence            9999999999999999999995 47777664322   1123456678899999999999976        5689999999


Q ss_pred             CcEEEeccCCceecCCCCceeeecccccc
Q 039406          214 FEAKVADFGLAKIASDVNTHVSTRVMGTF  242 (243)
Q Consensus       214 ~~~kl~DFG~a~~~~~~~~~~~~~~~GT~  242 (243)
                      +.+||+|||+++.+...........+||+
T Consensus       304 ~~vkL~DFGla~~~~~~~~~~~~~~~gt~  332 (501)
T PHA03210        304 GKIVLGDFGTAMPFEKEREAFDYGWVGTV  332 (501)
T ss_pred             CCEEEEeCCCceecCcccccccccccCCc
Confidence            99999999999987654332223345554

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.90  E-value=4.7e-24  Score=186.03  Aligned_cols=135  Identities=20%  Similarity=0.271  Sum_probs=116.1

Q ss_pred             ccceeeecCceEEEEEEecCCc-----------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCe--eEEEEe
Q 039406          103 DANLLRQDGFGYVHRGVLPNGK-----------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQ--RMLVYE  163 (243)
Q Consensus       103 ~~~~lg~G~~g~V~~~~~~~~~-----------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~--~~lv~e  163 (243)
                      ...+||+|+|-+||+|.+..+.                 +..++|..|+.+|+.|+|+|||++|..|.+..+  +.+|.|
T Consensus        44 ~~evLGrGafKtVYka~De~~giEVAWnqvk~~d~~q~~~~leR~~~Ev~lLKsL~H~NIirfy~SW~d~~n~~in~iTE  123 (632)
T KOG0584|consen   44 FDEVLGRGAFKTVYKAFDEEEGIEVAWNQVKIRDVTQSPEELERLYSEVHLLKSLKHPNIIRFYDSWVDTDNKTINFITE  123 (632)
T ss_pred             hhhhcccccceeeeeccccccchhhHHHHHhHHHhhcChHHHHHHHHHHHHHccCCCCceeeeeeheecCCCceeeeeee
Confidence            4568999999999999875442                 256889999999999999999999999987665  889999


Q ss_pred             ccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc----------CCCcEEECCC-CcEEEeccCCceecCCCCc
Q 039406          164 FVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD----------DLANILLDFK-FEAKVADFGLAKIASDVNT  232 (243)
Q Consensus       164 ~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~----------~~~NiLl~~~-~~~kl~DFG~a~~~~~~~~  232 (243)
                      ++..|+|..++++.+.  ++...++.|++||+.||.|||+          |++||+|+.+ |.|||+|+|||..+.....
T Consensus       124 L~TSGtLr~Y~kk~~~--vn~kaik~W~RQILkGL~yLHs~~PPIIHRDLKCDNIFinG~~G~VKIGDLGLAtl~r~s~a  201 (632)
T KOG0584|consen  124 LFTSGTLREYRKKHRR--VNIKAIKSWCRQILKGLVYLHSQDPPIIHRDLKCDNIFVNGNLGEVKIGDLGLATLLRKSHA  201 (632)
T ss_pred             cccCCcHHHHHHHhcc--CCHHHHHHHHHHHHHHhhhhhcCCCCccccccccceEEEcCCcCceeecchhHHHHhhcccc
Confidence            9999999999987664  8889999999999999999987          4589999755 9999999999999865543


Q ss_pred             eeeecccccc
Q 039406          233 HVSTRVMGTF  242 (243)
Q Consensus       233 ~~~~~~~GT~  242 (243)
                         ..++|||
T Consensus       202 ---ksvIGTP  208 (632)
T KOG0584|consen  202 ---KSVIGTP  208 (632)
T ss_pred             ---ceeccCc
Confidence               2378997

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=99.90  E-value=2.3e-23  Score=176.91  Aligned_cols=121  Identities=24%  Similarity=0.298  Sum_probs=106.0

Q ss_pred             ceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccCCC
Q 039406          105 NLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNN  168 (243)
Q Consensus       105 ~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~g  168 (243)
                      +.||+|+||.||++....+..                ....+.+|+.+|++++||||++++++|...+.+||||||+++|
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i~~~~~~~~~~~~~~lv~E~~~~~   80 (323)
T cd05595           1 KLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGG   80 (323)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCcceeeEEecCCEEEEEEeCCCCC
Confidence            479999999999998654321                2345678999999999999999999999999999999999999


Q ss_pred             CHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceec
Q 039406          169 TLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIA  227 (243)
Q Consensus       169 ~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~  227 (243)
                      +|.+++...+  .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++..
T Consensus        81 ~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~  145 (323)
T cd05595          81 ELFFHLSRER--VFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEG  145 (323)
T ss_pred             cHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHEEEcCCCCEEecccHHhccc
Confidence            9998886544  48999999999999999999987        468999999999999999998864

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.90  E-value=9.3e-24  Score=183.84  Aligned_cols=141  Identities=20%  Similarity=0.223  Sum_probs=121.9

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCc---------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEE
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGK---------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVY  162 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~---------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  162 (243)
                      ...|.+.+.||+|.|+.|.++++..+.               ..++.+.+|+++|+.|+|||||+++.+.+....+|+||
T Consensus        55 vg~y~i~~tig~g~f~~V~La~~~~t~~~VaiK~idkt~ln~~~~~k~~rev~imk~l~HPnIvkl~~v~~t~~~lylV~  134 (596)
T KOG0586|consen   55 VGLYVIIKTIGKGNFAKVKLARHILTGTEVAIKIIDKTQLNPSKRQKLGREVDIMKSLNHPNIVKLFSVIETEATLYLVM  134 (596)
T ss_pred             ccceeeeeeeccceeEEEEeeEecCCCceEEEEEehhcccChHHHHHHHHHHHHHHhcCCcceeeeeeeeeecceeEEEE
Confidence            477999999999999999999765442               24456899999999999999999999999999999999


Q ss_pred             eccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhcC--------CCcEEECCCCcEEEeccCCceecCCCCcee
Q 039406          163 EFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHDD--------LANILLDFKFEAKVADFGLAKIASDVNTHV  234 (243)
Q Consensus       163 e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~--------~~NiLl~~~~~~kl~DFG~a~~~~~~~~~~  234 (243)
                      ||+.+|.+++++...+.  +.+..+..++.|++++++|||.|        .+||||+.+.++||+|||++.++.....  
T Consensus       135 eya~~ge~~~yl~~~gr--~~e~~ar~~F~q~vsaveYcH~k~ivHrdLk~eNilL~~~mnikIaDfgfS~~~~~~~~--  210 (596)
T KOG0586|consen  135 EYASGGELFDYLVKHGR--MKEKEARAKFRQIVSAVEYCHSKNIVHRDLKAENILLDENMNIKIADFGFSTFFDYGLM--  210 (596)
T ss_pred             EeccCchhHHHHHhccc--chhhhhhhhhHHHHHHHHHHhhcceeccccchhhcccccccceeeeccccceeeccccc--
Confidence            99999999999987764  66688999999999999999873        3899999999999999999999874432  


Q ss_pred             eecccccc
Q 039406          235 STRVMGTF  242 (243)
Q Consensus       235 ~~~~~GT~  242 (243)
                      ..+.||++
T Consensus       211 lqt~cgsp  218 (596)
T KOG0586|consen  211 LQTFCGSP  218 (596)
T ss_pred             ccccCCCC
Confidence            33467765

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=99.90  E-value=1.6e-23  Score=174.40  Aligned_cols=130  Identities=18%  Similarity=0.253  Sum_probs=111.5

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch---------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEe
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE---------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYE  163 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~---------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e  163 (243)
                      ++|.+.+.||+|+||.||+|+++.+..               ..+.+.+|+.++++++|+||+++++++..++.+|+|||
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   80 (287)
T cd07848           1 NKFEVLGVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQENIVELKEAFRRRGKLYLVFE   80 (287)
T ss_pred             CCceEEEEecccCCEEEEEEEECCCCcEEEEEEEecccccccchhhHHHHHHHHHhCCCccccchhhhEecCCEEEEEEe
Confidence            468899999999999999998765422               34567899999999999999999999999999999999


Q ss_pred             ccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          164 FVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       164 ~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      |++++.+..+....  ..+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++.+...
T Consensus        81 ~~~~~~l~~~~~~~--~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~  153 (287)
T cd07848          81 YVEKNMLELLEEMP--NGVPPEKVRSYIYQLIKAIHWCHKNDIVHRDIKPENLLISHNDVLKLCDFGFARNLSEG  153 (287)
T ss_pred             cCCCCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCcEEEeeccCccccccc
Confidence            99987776554332  248899999999999999999986        468999999999999999999887543

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=99.90  E-value=4.3e-23  Score=175.76  Aligned_cols=129  Identities=20%  Similarity=0.269  Sum_probs=114.5

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc--------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEec
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK--------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEF  164 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~--------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  164 (243)
                      ++|++.+.||+|+||.||+++...+.              .....+.+|+++|++++|+||+++++++..++.+++||||
T Consensus         5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   84 (331)
T cd06649           5 DDFERISELGAGNGGVVTKVQHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEH   84 (331)
T ss_pred             ccceEEEeecCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEeec
Confidence            78999999999999999999876442              2346788999999999999999999999999999999999


Q ss_pred             cCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc---------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          165 VLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD---------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       165 ~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~---------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      +++++|.+++....  .+++..+..++.+++.||.|||.         +++|||++.++.+||+|||+++.+..
T Consensus        85 ~~~~~L~~~l~~~~--~~~~~~~~~~~~~i~~~l~~lH~~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~  156 (331)
T cd06649          85 MDGGSLDQVLKEAK--RIPEEILGKVSIAVLRGLAYLREKHQIMHRDVKPSNILVNSRGEIKLCDFGVSGQLID  156 (331)
T ss_pred             CCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHhhcCCEEcCCCChhhEEEcCCCcEEEccCcccccccc
Confidence            99999999997544  48899999999999999999985         45899999999999999999987643

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=99.90  E-value=3e-23  Score=175.28  Aligned_cols=133  Identities=23%  Similarity=0.310  Sum_probs=110.7

Q ss_pred             eeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccCCCCH
Q 039406          107 LRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTL  170 (243)
Q Consensus       107 lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~g~L  170 (243)
                      ||+|+||.||+++...+.+                ....+.+|+.+|++++|+||+++++++...+.+|+||||+.+|+|
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L   80 (312)
T cd05585           1 IGKGSFGKVMQVRKRDTQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQVNCPFIVPLKFSFQSPEKLYLVLAFINGGEL   80 (312)
T ss_pred             CCcCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCcEeceeeEEecCCeEEEEEcCCCCCcH
Confidence            7999999999998765421                235577899999999999999999999999999999999999999


Q ss_pred             HHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCceeeecccccc
Q 039406          171 VFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNTHVSTRVMGTF  242 (243)
Q Consensus       171 ~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~~~~~~~~GT~  242 (243)
                      .+++...+  .+++..++.++.|++.||.|||.        +|+|||++.++.+||+|||+++....... .....+||+
T Consensus        81 ~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~i~HrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~-~~~~~~gt~  157 (312)
T cd05585          81 FHHLQREG--RFDLSRARFYTAELLCALENLHKFNVIYRDLKPENILLDYQGHIALCDFGLCKLNMKDDD-KTNTFCGTP  157 (312)
T ss_pred             HHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCCeEeCCCCHHHeEECCCCcEEEEECcccccCccCCC-ccccccCCc
Confidence            99987544  48999999999999999999976        46899999999999999999986533322 222345654

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=99.90  E-value=1.8e-23  Score=179.01  Aligned_cols=131  Identities=23%  Similarity=0.240  Sum_probs=115.1

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVY  162 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  162 (243)
                      ++|.+.+.||+|+||.||+|+...+.+                ....+.+|+++|..++|+||+++++++.+++.+|+||
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (350)
T cd05573           1 DDFEVIKVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSDMIKRNQIAHVRAERDILADADSPWIVKLYYSFQDEEHLYLVM   80 (350)
T ss_pred             CCceEEEEEEeCCcEEEEEEEECCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhcCCCCccchhhheecCCeEEEEE
Confidence            478899999999999999998764321                3356788999999999999999999999999999999


Q ss_pred             eccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCC
Q 039406          163 EFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVN  231 (243)
Q Consensus       163 e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~  231 (243)
                      ||+.+++|.+++....  .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++.+....
T Consensus        81 e~~~~~~L~~~l~~~~--~l~~~~~~~i~~qi~~aL~~LH~~giiH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~  155 (350)
T cd05573          81 EYMPGGDLMNLLIRKD--VFPEETARFYIAELVLALDSVHKLGFIHRDIKPDNILIDADGHIKLADFGLCKKMNKAK  155 (350)
T ss_pred             cCCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEeecCCCCccCcccC
Confidence            9999999999997653  58999999999999999999976        4589999999999999999998775443

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=99.90  E-value=3.6e-23  Score=173.95  Aligned_cols=131  Identities=25%  Similarity=0.410  Sum_probs=111.5

Q ss_pred             CCCCccceeeecCceEEEEEEecCC------------------------------chhHHHHHHHHHHHHhcCCCccceE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNG------------------------------KEGEREFQAEVEIISRVHHKHLVSL  148 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~------------------------------~~~~~~~~~E~~~l~~l~hp~iv~~  148 (243)
                      ++|.+.+.||+|+||.||+|.+...                              ......+.+|+++|.+++|+||+++
T Consensus         5 ~~~~~~~~lg~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~   84 (304)
T cd05096           5 GHLLFKEKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDANKNARNDFLKEVKILSRLKDPNIIRL   84 (304)
T ss_pred             hhCeeeeEecccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCCCHHHHHHHHHHHHHHhhcCCCCeeEE
Confidence            5788899999999999999975321                              1134568899999999999999999


Q ss_pred             EEEEEeCCeeEEEEeccCCCCHHHHhccCC-----------------CCCCCHHHHHHHHHHHHHhhhHhhc--------
Q 039406          149 VGYYTAGSQRMLVYEFVLNNTLVFHLHGKG-----------------QPTMDWPTRIKIALGSAKGLAYLHD--------  203 (243)
Q Consensus       149 ~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~-----------------~~~l~~~~~~~i~~~i~~~l~~lH~--------  203 (243)
                      ++++.+.+..++||||+.+++|.+++....                 ...+++..++.++.|++.||.|||.        
T Consensus        85 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~ivH~dl  164 (304)
T cd05096          85 LGVCVDEDPLCMITEYMENGDLNQFLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYLSSLNFVHRDL  164 (304)
T ss_pred             EEEEecCCceEEEEecCCCCcHHHHHHhccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHCCccccCc
Confidence            999999999999999999999999885431                 1236778889999999999999987        


Q ss_pred             CCCcEEECCCCcEEEeccCCceecCC
Q 039406          204 DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       204 ~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      +++|||++.++.+||+|||+++.+..
T Consensus       165 kp~Nill~~~~~~kl~DfG~~~~~~~  190 (304)
T cd05096         165 ATRNCLVGENLTIKIADFGMSRNLYA  190 (304)
T ss_pred             chhheEEcCCccEEECCCccceeccc
Confidence            56899999999999999999987643

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=99.90  E-value=5.4e-23  Score=175.34  Aligned_cols=129  Identities=20%  Similarity=0.278  Sum_probs=113.7

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCc--------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEe
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGK--------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYE  163 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~--------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e  163 (243)
                      .++|+..+.||+|+||.||++.+..+.              .....+.+|+++|++++|+||++++++|.+++.+|+|||
T Consensus         4 ~~~y~~~~~lg~g~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   83 (333)
T cd06650           4 DDDFEKISELGAGNGGVVFKVSHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICME   83 (333)
T ss_pred             hhhhheeccccCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCcccceeEEEEECCEEEEEEe
Confidence            378999999999999999999876432              134568899999999999999999999999999999999


Q ss_pred             ccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc---------CCCcEEECCCCcEEEeccCCceecC
Q 039406          164 FVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD---------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       164 ~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~---------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      |+.+++|.+++...+  .+++..+..++.+++.+|.|||.         +++|||++.++.+||+|||++..+.
T Consensus        84 ~~~~~~L~~~l~~~~--~~~~~~~~~~~~~l~~~l~~lH~~~~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~  155 (333)
T cd06650          84 HMDGGSLDQVLKKAG--RIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLI  155 (333)
T ss_pred             cCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHhcCCEEecCCChhhEEEcCCCCEEEeeCCcchhhh
Confidence            999999999987544  48888999999999999999984         4589999999999999999998654

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=99.90  E-value=5.5e-23  Score=174.50  Aligned_cols=123  Identities=28%  Similarity=0.384  Sum_probs=105.4

Q ss_pred             cceeeecCceEEEEEEecCCc--------------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEe
Q 039406          104 ANLLRQDGFGYVHRGVLPNGK--------------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYE  163 (243)
Q Consensus       104 ~~~lg~G~~g~V~~~~~~~~~--------------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e  163 (243)
                      ++.||+|+||.||+++...+.                    .....+.+|+.+|+.++|+||+++++++..++.+|+|||
T Consensus         1 ~~~lg~G~~g~V~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~e   80 (323)
T cd05584           1 LKVLGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKHPFIVDLIYAFQTGGKLYLILE   80 (323)
T ss_pred             CceeeecCCeEEEEEEEcccCCCCCEEEEEEEEHHHHHhhhhhHHHHHHHHHHHHhCCCCchhceeeEEecCCeEEEEEe
Confidence            368999999999999753211                    122456789999999999999999999999999999999


Q ss_pred             ccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          164 FVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       164 ~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      |+.+++|.+++...+  .+.+..++.++.|++.||.|||.        +++|||++.++.+||+|||+++...
T Consensus        81 ~~~~~~L~~~~~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~  151 (323)
T cd05584          81 YLSGGELFMHLEREG--IFMEDTACFYLSEISLALEHLHQQGIIYRDLKPENILLDAQGHVKLTDFGLCKESI  151 (323)
T ss_pred             CCCCchHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCCEEEeeCcCCeecc
Confidence            999999999987554  47888889999999999999976        4589999999999999999998653

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=99.90  E-value=4.3e-23  Score=176.02  Aligned_cols=131  Identities=24%  Similarity=0.348  Sum_probs=109.0

Q ss_pred             hCCCCccceeeecCceEEEEEEecCC-------------------chhHHHHHHHHHHHHhc-CCCccceEEEEEEeC-C
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNG-------------------KEGEREFQAEVEIISRV-HHKHLVSLVGYYTAG-S  156 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~-------------------~~~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~-~  156 (243)
                      .++|.+.+.||+|+||.||+|.+...                   ....+.+.+|+.+|+++ +|+||+++++++... +
T Consensus         6 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~~   85 (338)
T cd05102           6 RDRLRLGKVLGHGAFGKVVEASAFGIDKKSSCNTVAVKMLKEGATASEHKALMSELKILIHIGNHLNVVNLLGACTKPNG   85 (338)
T ss_pred             hhHceeeeEeccCCcceEEEEEEeccCCcccchhhheeccccccchHHHHHHHHHHHHHHHhccCcceeeEEeEecCCCC
Confidence            36799999999999999999964210                   11245688999999999 899999999988754 4


Q ss_pred             eeEEEEeccCCCCHHHHhccCC----------------------------------------------------------
Q 039406          157 QRMLVYEFVLNNTLVFHLHGKG----------------------------------------------------------  178 (243)
Q Consensus       157 ~~~lv~e~~~~g~L~~~l~~~~----------------------------------------------------------  178 (243)
                      .+++|||||++|+|.+++....                                                          
T Consensus        86 ~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (338)
T cd05102          86 PLMVIVEFCKYGNLSNFLRAKREFFSPYREKSPKQRGRFRAMVEQSRVDRRIEAGQASVLFSRFQPSTSGSTNPPQETDD  165 (338)
T ss_pred             ceEEEEecCCCCcHHHHHHhcchhcccccccchhhhhhhhhhhhhhccccccccccCCccccccccccCcccccchhccc
Confidence            6899999999999999886432                                                          


Q ss_pred             --CCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          179 --QPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       179 --~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                        ...+++..++.++.|++.||.|||.        |++|||++.++.+||+|||+++.+.
T Consensus       166 ~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDiKp~Nil~~~~~~~kl~DfG~a~~~~  225 (338)
T cd05102         166 LWKSPLTMEDLICYSFQVARGMEFLASRKCIHRDLAARNILLSENNVVKICDFGLARDIY  225 (338)
T ss_pred             cccCCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCccceEEEcCCCcEEEeecccccccc
Confidence              1237788889999999999999987        5699999999999999999998764

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=99.90  E-value=5.3e-23  Score=183.42  Aligned_cols=144  Identities=17%  Similarity=0.136  Sum_probs=118.2

Q ss_pred             CCCccceeeecCceEEEEEEecCC-c-------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEecc
Q 039406          100 GFSDANLLRQDGFGYVHRGVLPNG-K-------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFV  165 (243)
Q Consensus       100 ~~~~~~~lg~G~~g~V~~~~~~~~-~-------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~  165 (243)
                      .|.+.+.||+|+||.||++....+ .             .....+.+|+.+|+.++|+|||++++++...+.+||||||+
T Consensus        68 ~y~~~~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~~~~~~~~~~~~~E~~~l~~l~Hpniv~~~~~~~~~~~~~lv~E~~  147 (478)
T PTZ00267         68 MYVLTTLVGRNPTTAAFVATRGSDPKEKVVAKFVMLNDERQAAYARSELHCLAACDHFGIVKHFDDFKSDDKLLLIMEYG  147 (478)
T ss_pred             eEEEEEEEEeCCCcEEEEEEEcCCCCeEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEECCEEEEEEECC
Confidence            488899999999999999975543 1             13356778999999999999999999999999999999999


Q ss_pred             CCCCHHHHhccC--CCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCc-ee
Q 039406          166 LNNTLVFHLHGK--GQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNT-HV  234 (243)
Q Consensus       166 ~~g~L~~~l~~~--~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~-~~  234 (243)
                      ++|+|.+++...  ....+++..+..++.|++.||.|||.        |++|||++.++.+||+|||+++.+..... ..
T Consensus       148 ~gg~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~~ivHrDlkp~NIll~~~~~~kL~DFgla~~~~~~~~~~~  227 (478)
T PTZ00267        148 SGGDLNKQIKQRLKEHLPFQEYEVGLLFYQIVLALDEVHSRKMMHRDLKSANIFLMPTGIIKLGDFGFSKQYSDSVSLDV  227 (478)
T ss_pred             CCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCEEECCcCHHhEEECCCCcEEEEeCcCceecCCcccccc
Confidence            999999887542  22358899999999999999999986        56899999999999999999998754322 12


Q ss_pred             eeccccccC
Q 039406          235 STRVMGTFG  243 (243)
Q Consensus       235 ~~~~~GT~G  243 (243)
                      ....+||++
T Consensus       228 ~~~~~gt~~  236 (478)
T PTZ00267        228 ASSFCGTPY  236 (478)
T ss_pred             ccccCCCcc
Confidence            234567653

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.90  E-value=1.8e-24  Score=187.66  Aligned_cols=135  Identities=30%  Similarity=0.383  Sum_probs=116.2

Q ss_pred             CCccceeeecCceEEEEEEecCCc----------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEec
Q 039406          101 FSDANLLRQDGFGYVHRGVLPNGK----------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEF  164 (243)
Q Consensus       101 ~~~~~~lg~G~~g~V~~~~~~~~~----------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  164 (243)
                      |..++.||.|+||.||.+++..+.                +....+++|+..|.+|+|||+|.+.++|..+...||||||
T Consensus        28 f~dLrEIGHGSFGAVYfArd~~n~evVAIKKMsySGKQs~EKWqDIlKEVrFL~~l~HPntieYkgCyLre~TaWLVMEY  107 (948)
T KOG0577|consen   28 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDILKEVRFLRQLRHPNTIEYKGCYLREHTAWLVMEY  107 (948)
T ss_pred             HHHHHHhcCCccceeEEeeccCccceeeeeeccccccccHHHHHHHHHHHHHHHhccCCCcccccceeeccchHHHHHHH
Confidence            777899999999999999866543                2456789999999999999999999999999999999999


Q ss_pred             cCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc------CC--CcEEECCCCcEEEeccCCceecCCCCceeee
Q 039406          165 VLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD------DL--ANILLDFKFEAKVADFGLAKIASDVNTHVST  236 (243)
Q Consensus       165 ~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~------~~--~NiLl~~~~~~kl~DFG~a~~~~~~~~~~~~  236 (243)
                      |-| +-.|++.-.++ .+.+..+..|+.+.++||.|||.      |+  .|||+++.|.|||+|||.|.+....++    
T Consensus       108 ClG-SAsDlleVhkK-plqEvEIAAi~~gaL~gLaYLHS~~~IHRDiKAGNILLse~g~VKLaDFGSAsi~~PAns----  181 (948)
T KOG0577|consen  108 CLG-SASDLLEVHKK-PLQEVEIAAITHGALQGLAYLHSHNRIHRDIKAGNILLSEPGLVKLADFGSASIMAPANS----  181 (948)
T ss_pred             Hhc-cHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHHHHhhHHhhhccccceEecCCCeeeeccccchhhcCchhc----
Confidence            955 77787765544 58899999999999999999975      44  799999999999999999998876543    


Q ss_pred             cccccc
Q 039406          237 RVMGTF  242 (243)
Q Consensus       237 ~~~GT~  242 (243)
                       ++|||
T Consensus       182 -FvGTP  186 (948)
T KOG0577|consen  182 -FVGTP  186 (948)
T ss_pred             -ccCCc
Confidence             67776

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=99.90  E-value=6.4e-23  Score=171.30  Aligned_cols=128  Identities=24%  Similarity=0.339  Sum_probs=111.1

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch--------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEec
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE--------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEF  164 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~--------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  164 (243)
                      ++|.+.+.||+|+||.||+|+.+.+..              ....+.+|+.+|++++|+||+++++++.+.+..|+||||
T Consensus         5 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~   84 (288)
T cd07871           5 ETYVKLDKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKNLKHANIVTLHDIIHTERCLTLVFEY   84 (288)
T ss_pred             ccceEeeEEecCCCEEEEEEEECCCCCEEEEEEecccccCCcchhHHHHHHHHHhCCCCCEeeEEEEEcCCCeEEEEEeC
Confidence            679999999999999999997654321              234677899999999999999999999999999999999


Q ss_pred             cCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          165 VLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       165 ~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      +.+ +|.+++...+. .+++..++.++.|++.||.|||.        +|+|||++.++.+||+|||+++...
T Consensus        85 ~~~-~l~~~l~~~~~-~~~~~~~~~~~~qi~~aL~~LH~~~ivH~dlkp~Nil~~~~~~~kl~DfG~~~~~~  154 (288)
T cd07871          85 LDS-DLKQYLDNCGN-LMSMHNVKIFMFQLLRGLSYCHKRKILHRDLKPQNLLINEKGELKLADFGLARAKS  154 (288)
T ss_pred             CCc-CHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEECcCcceeecc
Confidence            975 89888865443 47888999999999999999987        5689999999999999999998754

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=99.90  E-value=4.9e-24  Score=195.87  Aligned_cols=148  Identities=21%  Similarity=0.188  Sum_probs=125.7

Q ss_pred             HHHHHhCCCCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCC
Q 039406           93 ELARATDGFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGS  156 (243)
Q Consensus        93 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~  156 (243)
                      ++....++|.++++||+|+||.|..++++.+.+                ....|..|-.+|..-+.+-|+.++-.|.+++
T Consensus        69 ~lrl~~~DfeilKvIGrGaFGEV~lVr~k~t~~VYAMK~lnK~eMlKr~~tA~F~EERDimv~~ns~Wiv~LhyAFQD~~  148 (1317)
T KOG0612|consen   69 ELRLKAEDFEILKVIGRGAFGEVALVRHKSTEKVYAMKILNKWEMLKRAETACFREERDIMVFGNSEWIVQLHYAFQDER  148 (1317)
T ss_pred             HHhCCHHhhHHHHHhcccccceeEEEEeeccccchhHHHhhHHHHhhchhHHHHHHHhHHHHcCCcHHHHHHHHHhcCcc
Confidence            334446899999999999999999999987754                2234677888999999999999999999999


Q ss_pred             eeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhh------Hhhc--CCCcEEECCCCcEEEeccCCceecC
Q 039406          157 QRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLA------YLHD--DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       157 ~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~------~lH~--~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      ++|||||||.||+|..++.+..  .+++..+++|+..|+.||.      |+||  ||+|||||..|++||+|||.|-.+.
T Consensus       149 ~LYlVMdY~pGGDlltLlSk~~--~~pE~~ArFY~aEiVlAldslH~mgyVHRDiKPDNvLld~~GHikLADFGsClkm~  226 (1317)
T KOG0612|consen  149 YLYLVMDYMPGGDLLTLLSKFD--RLPEDWARFYTAEIVLALDSLHSMGYVHRDIKPDNVLLDKSGHIKLADFGSCLKMD  226 (1317)
T ss_pred             ceEEEEecccCchHHHHHhhcC--CChHHHHHHHHHHHHHHHHHHHhccceeccCCcceeEecccCcEeeccchhHHhcC
Confidence            9999999999999999997665  4888888888777665555      5566  6799999999999999999999998


Q ss_pred             CCCceeeecccccc
Q 039406          229 DVNTHVSTRVMGTF  242 (243)
Q Consensus       229 ~~~~~~~~~~~GT~  242 (243)
                      .+.......-+|||
T Consensus       227 ~dG~V~s~~aVGTP  240 (1317)
T KOG0612|consen  227 ADGTVRSSVAVGTP  240 (1317)
T ss_pred             CCCcEEeccccCCC
Confidence            87776666779998

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=99.90  E-value=8.4e-23  Score=172.94  Aligned_cols=124  Identities=26%  Similarity=0.276  Sum_probs=106.4

Q ss_pred             ceeeecCceEEEEEEecCC---c---------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccC
Q 039406          105 NLLRQDGFGYVHRGVLPNG---K---------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVL  166 (243)
Q Consensus       105 ~~lg~G~~g~V~~~~~~~~---~---------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~  166 (243)
                      +.||+|+||.||+++...+   .               .....+.+|+++|++++|+||+++++++.+.+.+|+||||++
T Consensus         2 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~   81 (318)
T cd05582           2 KVLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKATLKVRDRVRTKMERDILAEVNHPFIVKLHYAFQTEGKLYLILDFLR   81 (318)
T ss_pred             ceeeeCCCEEEEEEEEeccCCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhCCCCCcccEEEEEEcCCEEEEEEcCCC
Confidence            6799999999999875321   1               123456789999999999999999999999999999999999


Q ss_pred             CCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          167 NNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       167 ~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      +++|.+++....  .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++.....
T Consensus        82 ~~~L~~~l~~~~--~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~  151 (318)
T cd05582          82 GGDLFTRLSKEV--MFTEEDVKFYLAELALALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKESIDH  151 (318)
T ss_pred             CCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHeEECCCCcEEEeeccCCcccCCC
Confidence            999999986543  48999999999999999999987        458999999999999999999876543

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=99.90  E-value=9.1e-23  Score=170.10  Aligned_cols=130  Identities=28%  Similarity=0.363  Sum_probs=112.3

Q ss_pred             CCCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEe
Q 039406          100 GFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYE  163 (243)
Q Consensus       100 ~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e  163 (243)
                      +|+..++||+|+||.||++....+..                ....+.+|+.+|++++|+||+++++++.+++.+|+|||
T Consensus         1 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   80 (285)
T cd05605           1 TFRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLT   80 (285)
T ss_pred             CceEEEEEecCCCeEEEEEEEcCCCceEEEEEEehhhhhhhhhHHHHHHHHHHHHhcCCCCEeeeeeeecCCCeEEEEEe
Confidence            47888999999999999998654321                12446789999999999999999999999999999999


Q ss_pred             ccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          164 FVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       164 ~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      |+.+++|.+++.......+++..++.++.|++.||.|||.        +++|||+++++.++|+|||+++.+..
T Consensus        81 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~  154 (285)
T cd05605          81 LMNGGDLKFHIYNMGNPGFDEERAVFYAAEITCGLEDLHRERIVYRDLKPENILLDDYGHIRISDLGLAVEIPE  154 (285)
T ss_pred             ccCCCcHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHHCCcEecCCCHHHEEECCCCCEEEeeCCCceecCC
Confidence            9999999988865544458999999999999999999986        45899999999999999999987643

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=99.90  E-value=3.3e-23  Score=170.54  Aligned_cols=130  Identities=18%  Similarity=0.328  Sum_probs=113.0

Q ss_pred             HhCCCCccceeeecCceEEEEEEecCCch---------------hHHHHHHHHHHHHhcCCCccceEEEEEEe-----CC
Q 039406           97 ATDGFSDANLLRQDGFGYVHRGVLPNGKE---------------GEREFQAEVEIISRVHHKHLVSLVGYYTA-----GS  156 (243)
Q Consensus        97 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~---------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-----~~  156 (243)
                      ....|...+.||+|+||.|+.+.++.+++               ..++..+|+++|+.++|+||+.+++++..     -+
T Consensus        20 i~~~y~~~~~iG~GAyGvVcsA~~~~t~~~VAIKKi~~~F~~~~~akRtlRElklLr~~~HeNIi~l~di~~p~~~~~f~   99 (359)
T KOG0660|consen   20 IPRYYVLIEPIGRGAYGVVCSAKDKRTGEKVAIKKILNPFENQIDAKRTLRELKLLRHLRHENIIGLLDIFRPPSRDKFN   99 (359)
T ss_pred             ccceecccccccCcceeeEEEEEEcCCCCEeehhhhhhhhhchHHHHHHHHHHHHHHHhcCCCcceEEeecccccccccc
Confidence            34567778999999999999998876643               45677899999999999999999999875     34


Q ss_pred             eeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          157 QRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       157 ~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      .+|+|+|+| +.+|...++...  .++...+..++.|++.||+|+|+        ||+|+|++.+..+||+|||+|+...
T Consensus       100 DvYiV~elM-etDL~~iik~~~--~L~d~H~q~f~YQiLrgLKyiHSAnViHRDLKPsNll~n~~c~lKI~DFGLAR~~~  176 (359)
T KOG0660|consen  100 DVYLVFELM-ETDLHQIIKSQQ--DLTDDHAQYFLYQILRGLKYIHSANVIHRDLKPSNLLLNADCDLKICDFGLARYLD  176 (359)
T ss_pred             eeEEehhHH-hhHHHHHHHcCc--cccHHHHHHHHHHHHHhcchhhcccccccccchhheeeccCCCEEeccccceeecc
Confidence            799999999 459999997654  49999999999999999999976        6799999999999999999999985


Q ss_pred             C
Q 039406          229 D  229 (243)
Q Consensus       229 ~  229 (243)
                      .
T Consensus       177 ~  177 (359)
T KOG0660|consen  177 K  177 (359)
T ss_pred             c
Confidence            4

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=99.90  E-value=1.1e-22  Score=173.14  Aligned_cols=121  Identities=23%  Similarity=0.354  Sum_probs=105.6

Q ss_pred             ceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhc-CCCccceEEEEEEeCCeeEEEEeccCC
Q 039406          105 NLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRV-HHKHLVSLVGYYTAGSQRMLVYEFVLN  167 (243)
Q Consensus       105 ~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~~~lv~e~~~~  167 (243)
                      ++||+|+||.||++....+.+                ....+.+|+.++.++ +|+||+++++++.+.+.+|||||||++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~il~~~~~hp~Iv~~~~~~~~~~~~~lv~e~~~~   80 (329)
T cd05588           1 RVIGRGSYAKVLLVELKKTRRIYAMKVIKKELVNDDEDIDWVQTEKHVFETASNHPFLVGLHSCFQTESRLFFVIEFVSG   80 (329)
T ss_pred             CeEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCCCCceEEEEEcCCEEEEEEeCCCC
Confidence            479999999999998665421                234577899999998 799999999999999999999999999


Q ss_pred             CCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceec
Q 039406          168 NTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIA  227 (243)
Q Consensus       168 g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~  227 (243)
                      |+|.+++...+  .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++..
T Consensus        81 g~L~~~~~~~~--~l~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~  146 (329)
T cd05588          81 GDLMFHMQRQR--KLPEEHARFYSAEISLALNFLHERGIIYRDLKLDNVLLDAEGHIKLTDYGMCKEG  146 (329)
T ss_pred             CCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEECCCCCEEECcCcccccc
Confidence            99998886543  48999999999999999999987        468999999999999999999753

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=99.89  E-value=9.7e-23  Score=173.03  Aligned_cols=125  Identities=29%  Similarity=0.417  Sum_probs=105.8

Q ss_pred             CCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHH---HhcCCCccceEEEEEEeCCeeEEE
Q 039406          101 FSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEII---SRVHHKHLVSLVGYYTAGSQRMLV  161 (243)
Q Consensus       101 ~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l---~~l~hp~iv~~~~~~~~~~~~~lv  161 (243)
                      |.+.+.||+|+||.||++....+.+                ..+.+.+|++++   +.++|+||+++++++.+.+.+|+|
T Consensus         1 y~i~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~l~~e~~~~~~~~~l~hp~i~~~~~~~~~~~~~~lv   80 (324)
T cd05589           1 FRCLAVLGRGHFGKVLLAEYKKTGELYAIKALKKGDIIARDEVESLMCEKRIFETANSERHPFLVNLFACFQTEDHVCFV   80 (324)
T ss_pred             CeEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccccCCCChhceeeEEEcCCEEEEE
Confidence            6678999999999999998765321                234566666655   566899999999999999999999


Q ss_pred             EeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          162 YEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       162 ~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      |||+.+++|..++...   .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++...
T Consensus        81 ~E~~~~~~L~~~~~~~---~l~~~~~~~~~~qi~~al~~lH~~~ivHrdlkp~Nill~~~~~~kL~Dfg~~~~~~  152 (324)
T cd05589          81 MEYAAGGDLMMHIHTD---VFSEPRAVFYAACVVLGLQYLHENKIVYRDLKLDNLLLDTEGFVKIADFGLCKEGM  152 (324)
T ss_pred             EcCCCCCcHHHHhhcC---CCCHHHHHHHHHHHHHHHHHHHhCCeEecCCCHHHeEECCCCcEEeCcccCCccCC
Confidence            9999999999888542   48999999999999999999986        4689999999999999999987643

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=99.89  E-value=1.6e-22  Score=171.67  Aligned_cols=126  Identities=25%  Similarity=0.357  Sum_probs=108.7

Q ss_pred             CCCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhcCC-CccceEEEEEEeCCeeEEEE
Q 039406          100 GFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRVHH-KHLVSLVGYYTAGSQRMLVY  162 (243)
Q Consensus       100 ~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l~h-p~iv~~~~~~~~~~~~~lv~  162 (243)
                      +|.+.+.||+|+||.||+|....+.+                ..+.+..|++++..++| ++|+++++++...+.+|+||
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (324)
T cd05587           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVM   80 (324)
T ss_pred             CceEEEEEeeccCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcCCCCceeeeEEEEEcCCEEEEEE
Confidence            57889999999999999998765421                23457788999999976 46888999999999999999


Q ss_pred             eccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceec
Q 039406          163 EFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIA  227 (243)
Q Consensus       163 e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~  227 (243)
                      ||+++|+|.+++....  .+++..++.++.|++.||.|||.        +|+|||++.++.+||+|||+++..
T Consensus        81 E~~~~g~L~~~~~~~~--~~~~~~~~~~~~qi~~al~~lH~~~ivH~dlkp~Nill~~~~~~kL~Dfg~~~~~  151 (324)
T cd05587          81 EYVNGGDLMYHIQQVG--KFKEPHAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVMLDAEGHIKIADFGMCKEN  151 (324)
T ss_pred             cCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEEcCCCCEEEeecCcceec
Confidence            9999999999886554  48899999999999999999987        568999999999999999999764

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=99.89  E-value=1.6e-22  Score=170.05  Aligned_cols=128  Identities=22%  Similarity=0.300  Sum_probs=110.3

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch--------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEec
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE--------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEF  164 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~--------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  164 (243)
                      ++|.+.+.||+|+||.||+|....+.+              ....+.+|+.+|+.++|+||+++++++.+....|+||||
T Consensus         5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~   84 (303)
T cd07869           5 DSYEKLEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEEGTPFTAIREASLLKGLKHANIVLLHDIIHTKETLTLVFEY   84 (303)
T ss_pred             ccceEeeeEEecCCEEEEEEEECCCCCEEEEEEeccccccccchhHHHHHHHHhhCCCCCcCeEEEEEecCCeEEEEEEC
Confidence            789999999999999999998764321              234577899999999999999999999999999999999


Q ss_pred             cCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          165 VLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       165 ~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      +. ++|.+++..... .+.+..++.++.|++.||.|||.        ||+|||++.++.+||+|||+++...
T Consensus        85 ~~-~~l~~~~~~~~~-~~~~~~~~~~~~qi~~al~~lH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~  154 (303)
T cd07869          85 VH-TDLCQYMDKHPG-GLHPENVKLFLFQLLRGLSYIHQRYILHRDLKPQNLLISDTGELKLADFGLARAKS  154 (303)
T ss_pred             CC-cCHHHHHHhCCC-CCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEECCCCcceecc
Confidence            95 578777765433 48888999999999999999987        5689999999999999999998654

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=99.89  E-value=1.8e-22  Score=171.83  Aligned_cols=121  Identities=23%  Similarity=0.352  Sum_probs=105.1

Q ss_pred             ceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhc-CCCccceEEEEEEeCCeeEEEEeccCC
Q 039406          105 NLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRV-HHKHLVSLVGYYTAGSQRMLVYEFVLN  167 (243)
Q Consensus       105 ~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~~~lv~e~~~~  167 (243)
                      +.||+|+||.||+++...+..                ..+.+.+|+.++.++ +|+||+++++++...+.+|+||||+.+
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~~~~   80 (329)
T cd05618           1 RVIGRGSYAKVLLVRLKKTERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNG   80 (329)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEhhHhcchhHHHHHHHHHHHHHhcCCCCcCCceeeEEEeCCEEEEEEeCCCC
Confidence            479999999999998765431                234567888888877 899999999999999999999999999


Q ss_pred             CCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceec
Q 039406          168 NTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIA  227 (243)
Q Consensus       168 g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~  227 (243)
                      |+|..++...+  .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++..
T Consensus        81 ~~L~~~~~~~~--~l~~~~~~~i~~qi~~~l~~lH~~~ivH~Dikp~Nili~~~~~~kL~DfG~~~~~  146 (329)
T cd05618          81 GDLMFHMQRQR--KLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEG  146 (329)
T ss_pred             CCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEECCCCCEEEeeCCccccc
Confidence            99998886544  48999999999999999999987        468999999999999999999864

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=99.89  E-value=2.1e-22  Score=172.94  Aligned_cols=137  Identities=23%  Similarity=0.306  Sum_probs=115.2

Q ss_pred             cceeeecCceEEEEEEecCCch---------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccCCC
Q 039406          104 ANLLRQDGFGYVHRGVLPNGKE---------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNN  168 (243)
Q Consensus       104 ~~~lg~G~~g~V~~~~~~~~~~---------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~g  168 (243)
                      .++||.|.||+||-|+++.+.+               ....+.+|+.||++++||.||.+...|++.+.+++|||-+.| 
T Consensus       569 devLGSGQFG~VYgg~hRktGrdVAvKvIdKlrFp~kqesqlR~EVaILq~l~HPGiV~le~M~ET~ervFVVMEKl~G-  647 (888)
T KOG4236|consen  569 DEVLGSGQFGTVYGGKHRKTGRDVAVKVIDKLRFPTKQESQLRNEVAILQNLHHPGIVNLECMFETPERVFVVMEKLHG-  647 (888)
T ss_pred             HhhccCCcceeeecceecccCceeeeeeeecccCCCchHHHHHHHHHHHHhcCCCCeeEEEEeecCCceEEEEehhhcc-
Confidence            4789999999999998776542               456789999999999999999999999999999999999965 


Q ss_pred             CHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCC---CcEEEeccCCceecCCCCceeeec
Q 039406          169 TLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFK---FEAKVADFGLAKIASDVNTHVSTR  237 (243)
Q Consensus       169 ~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~---~~~kl~DFG~a~~~~~~~~~~~~~  237 (243)
                      +..++|.......+++....+++.||+.||.|||.        ||+|||+...   -.+||||||+||++++....  .+
T Consensus       648 DMLEMILSsEkgRL~er~TkFlvtQIL~ALr~LH~knIvHCDLKPENVLLas~~~FPQvKlCDFGfARiIgEksFR--rs  725 (888)
T KOG4236|consen  648 DMLEMILSSEKGRLPERITKFLVTQILVALRYLHFKNIVHCDLKPENVLLASASPFPQVKLCDFGFARIIGEKSFR--RS  725 (888)
T ss_pred             hHHHHHHHhhcccchHHHHHHHHHHHHHHHHHhhhcceeeccCCchheeeccCCCCCceeeccccceeecchhhhh--hh
Confidence            55555544444469999999999999999999987        6799999643   47999999999999887653  35


Q ss_pred             cccccC
Q 039406          238 VMGTFG  243 (243)
Q Consensus       238 ~~GT~G  243 (243)
                      ++|||.
T Consensus       726 VVGTPA  731 (888)
T KOG4236|consen  726 VVGTPA  731 (888)
T ss_pred             hcCCcc
Confidence            889973

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=99.89  E-value=2e-22  Score=170.97  Aligned_cols=122  Identities=28%  Similarity=0.382  Sum_probs=105.1

Q ss_pred             ceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhc-CCCccceEEEEEEeCCeeEEEEeccCC
Q 039406          105 NLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRV-HHKHLVSLVGYYTAGSQRMLVYEFVLN  167 (243)
Q Consensus       105 ~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~~~lv~e~~~~  167 (243)
                      ++||+|+||.||+|+...+.+                ....+..|+++|..+ +|+||+++++++.+.+.+|+||||+++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~   80 (321)
T cd05591           1 KVLGKGSFGKVMLAELKGTDEVYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPFLTALHCCFQTKDRLFFVMEYVNG   80 (321)
T ss_pred             CccccCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCeEEEEEeCCCC
Confidence            469999999999998765421                234466788888876 799999999999999999999999999


Q ss_pred             CCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          168 NTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       168 g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      ++|..++....  .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++...
T Consensus        81 ~~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDikp~Nill~~~~~~kL~Dfg~~~~~~  147 (321)
T cd05591          81 GDLMFQIQRSR--KFDEPRSRFYAAEVTLALMFLHRHGVIYRDLKLDNILLDAEGHCKLADFGMCKEGI  147 (321)
T ss_pred             CcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEEeecccceecc
Confidence            99998886544  48899999999999999999986        5689999999999999999998653

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=99.89  E-value=2.3e-22  Score=170.30  Aligned_cols=135  Identities=26%  Similarity=0.364  Sum_probs=108.2

Q ss_pred             ceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhc-CCCccceEEEEEEeCCeeEEEEeccCC
Q 039406          105 NLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRV-HHKHLVSLVGYYTAGSQRMLVYEFVLN  167 (243)
Q Consensus       105 ~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~~~lv~e~~~~  167 (243)
                      ++||+|+||.||+|....+.+                ..+.+..|..++..+ +|+||+++++++...+.+|+||||+++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~i~~~~~~~~~~~~~~lv~e~~~g   80 (316)
T cd05592           1 KVLGKGSFGKVMLAELKGTNEFFAIKALKKDVVLEDDDVECTMVERRVLALAWEHPFLTHLFCTFQTKEHLFFVMEYLNG   80 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            479999999999998765432                223445677777654 899999999999999999999999999


Q ss_pred             CCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCceeeeccc
Q 039406          168 NTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNTHVSTRVM  239 (243)
Q Consensus       168 g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~~~~~~~~  239 (243)
                      |+|.+++....  .+++..+..++.|++.||.|||.        +++|||++.++.+||+|||+++....... .....+
T Consensus        81 g~L~~~~~~~~--~~~~~~~~~~~~qi~~al~~LH~~~ivH~dlkp~Nill~~~~~~kL~Dfg~a~~~~~~~~-~~~~~~  157 (316)
T cd05592          81 GDLMFHIQSSG--RFDEARARFYAAEIICGLQFLHKKGIIYRDLKLDNVLLDKDGHIKIADFGMCKENMNGEG-KASTFC  157 (316)
T ss_pred             CcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCEEeCCCCHHHeEECCCCCEEEccCcCCeECCCCCC-cccccc
Confidence            99999887544  48899999999999999999987        45899999999999999999987543222 222345


Q ss_pred             ccc
Q 039406          240 GTF  242 (243)
Q Consensus       240 GT~  242 (243)
                      ||+
T Consensus       158 gt~  160 (316)
T cd05592         158 GTP  160 (316)
T ss_pred             CCc
Confidence            554

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=99.89  E-value=2.4e-22  Score=170.66  Aligned_cols=135  Identities=25%  Similarity=0.348  Sum_probs=106.7

Q ss_pred             ceeeecCceEEEEEEecCCch----------------hHHHHHHHH-HHHHhcCCCccceEEEEEEeCCeeEEEEeccCC
Q 039406          105 NLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEV-EIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLN  167 (243)
Q Consensus       105 ~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~-~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~  167 (243)
                      +.||+|+||.||+|+...+..                ....+.+|. .+++.++|+||+++++++...+.+|+||||+.+
T Consensus         1 ~~lg~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~Iv~~~~~~~~~~~~~lv~e~~~~   80 (325)
T cd05602           1 KVIGKGSFGKVLLARHKAEEKFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFVLDYING   80 (325)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCceeEEEEcCCeEEEEEeCCCC
Confidence            479999999999998765432                112334444 356788999999999999999999999999999


Q ss_pred             CCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCceeeeccc
Q 039406          168 NTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNTHVSTRVM  239 (243)
Q Consensus       168 g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~~~~~~~~  239 (243)
                      ++|.+++....  .+.+..++.++.|++.||.|||.        |++|||++.++.+||+|||+++....... .....+
T Consensus        81 ~~L~~~~~~~~--~~~~~~~~~~~~qi~~~L~~lH~~giiHrDlkp~Nili~~~~~~kl~DfG~a~~~~~~~~-~~~~~~  157 (325)
T cd05602          81 GELFYHLQRER--CFLEPRARFYAAEIASALGYLHSLNIVYRDLKPENILLDSQGHIVLTDFGLCKENIEHNG-TTSTFC  157 (325)
T ss_pred             CcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEECCCCCEEEccCCCCcccccCCC-Cccccc
Confidence            99999987544  47888889999999999999986        56899999999999999999986533222 122345


Q ss_pred             ccc
Q 039406          240 GTF  242 (243)
Q Consensus       240 GT~  242 (243)
                      ||+
T Consensus       158 gt~  160 (325)
T cd05602         158 GTP  160 (325)
T ss_pred             CCc
Confidence            654

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=99.89  E-value=2.6e-22  Score=170.29  Aligned_cols=127  Identities=24%  Similarity=0.338  Sum_probs=108.8

Q ss_pred             CCCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhc-CCCccceEEEEEEeCCeeEEEE
Q 039406          100 GFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRV-HHKHLVSLVGYYTAGSQRMLVY  162 (243)
Q Consensus       100 ~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~~~lv~  162 (243)
                      +|.+.+.||+|+||.||+|+...+..                ..+.+..|..++..+ +|++|+++++++.+.+.+|+||
T Consensus         1 df~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (323)
T cd05616           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALSGKPPFLTQLHSCFQTMDRLYFVM   80 (323)
T ss_pred             CceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCeEeeEEEEEecCCEEEEEE
Confidence            57889999999999999998765431                223456678888777 5899999999999999999999


Q ss_pred             eccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          163 EFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       163 e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      ||+.+|+|.+++...+  .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++...
T Consensus        81 E~~~~g~L~~~~~~~~--~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~kL~DfG~~~~~~  152 (323)
T cd05616          81 EYVNGGDLMYQIQQVG--RFKEPHAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENM  152 (323)
T ss_pred             cCCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCEEecCCCHHHeEECCCCcEEEccCCCceecC
Confidence            9999999999886554  48899999999999999999986        5689999999999999999998654

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=99.89  E-value=2.4e-22  Score=170.39  Aligned_cols=121  Identities=26%  Similarity=0.360  Sum_probs=101.9

Q ss_pred             ceeeecCceEEEEEEecCCch----------------hHHHHHHHH-HHHHhcCCCccceEEEEEEeCCeeEEEEeccCC
Q 039406          105 NLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEV-EIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLN  167 (243)
Q Consensus       105 ~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~-~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~  167 (243)
                      ++||+|+||.||+|+...+.+                ....+.+|. .+++.++|+||+++++++.+.+..|+|||||++
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~   80 (321)
T cd05603           1 KVIGKGSFGKVLLAKRKSDGSFYAVKVLQKKTILKKKEQNHIMAERNVLLKNLKHPFLVGLHYSFQTAEKLYFVLDYVNG   80 (321)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHHhCCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            479999999999998765422                123344554 467889999999999999999999999999999


Q ss_pred             CCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceec
Q 039406          168 NTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIA  227 (243)
Q Consensus       168 g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~  227 (243)
                      ++|.+++....  .+.+..+..++.||+.||.|||.        +++|||++.++.+||+|||+++..
T Consensus        81 ~~L~~~l~~~~--~~~~~~~~~~~~qi~~~L~~lH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~  146 (321)
T cd05603          81 GELFFHLQRER--CFLEPRARFYAAEVASAIGYLHSLNIIYRDLKPENILLDSQGHVVLTDFGLCKEG  146 (321)
T ss_pred             CCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeEECCCCCEEEccCCCCccC
Confidence            99998886543  48888999999999999999987        468999999999999999999864

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=99.89  E-value=2.2e-22  Score=170.65  Aligned_cols=122  Identities=29%  Similarity=0.395  Sum_probs=105.3

Q ss_pred             ceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhc-CCCccceEEEEEEeCCeeEEEEeccCC
Q 039406          105 NLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRV-HHKHLVSLVGYYTAGSQRMLVYEFVLN  167 (243)
Q Consensus       105 ~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~~~lv~e~~~~  167 (243)
                      +.||+|+||.||+|+.+.+..                ..+.+.+|+.++..+ +|+||+++++++.+.+.+|+|||||.+
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~~~iv~Ey~~~   80 (320)
T cd05590           1 RVLGKGSFGKVMLARLKESGRLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLYCCFQTPDRLFFVMEFVNG   80 (320)
T ss_pred             CeeeeCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhccCCCchhceeeEEEcCCEEEEEEcCCCC
Confidence            479999999999998765431                234566788888876 699999999999999999999999999


Q ss_pred             CCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          168 NTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       168 g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      |+|.+++....  .+++..++.++.|++.||.|||.        +|+|||++.++.+||+|||+++...
T Consensus        81 g~L~~~i~~~~--~l~~~~~~~~~~ql~~~L~~lH~~~ivH~dlkp~NIli~~~~~~kL~DfG~~~~~~  147 (320)
T cd05590          81 GDLMFHIQKSR--RFDEARARFYAAEITSALMFLHDKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGI  147 (320)
T ss_pred             chHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCCHHHeEECCCCcEEEeeCCCCeecC
Confidence            99999886554  48999999999999999999987        5689999999999999999998653

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=99.89  E-value=2.7e-22  Score=170.29  Aligned_cols=122  Identities=27%  Similarity=0.388  Sum_probs=102.6

Q ss_pred             ceeeecCceEEEEEEecCCch----------------hHHHHHHHHH-HHHhcCCCccceEEEEEEeCCeeEEEEeccCC
Q 039406          105 NLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVE-IISRVHHKHLVSLVGYYTAGSQRMLVYEFVLN  167 (243)
Q Consensus       105 ~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~-~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~  167 (243)
                      +.||+|+||.||+|+...+.+                ..+.+.+|.. +++.++|+||+++++++...+.+|+||||+.+
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~~~~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~   80 (323)
T cd05575           1 KVIGKGSFGKVLLAKHKADGKFYAVKVLQKKAILKKKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTADKLYFVLDYVNG   80 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhhCCCCCCCCeeEEEEeCCEEEEEEcCCCC
Confidence            479999999999998765432                1233444544 56789999999999999999999999999999


Q ss_pred             CCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          168 NTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       168 g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      |+|.+++...+  .+.+..++.++.||+.||.|||.        +++|||++.++.+||+|||+++...
T Consensus        81 g~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~~givH~dikp~NIll~~~~~~kl~Dfg~~~~~~  147 (323)
T cd05575          81 GELFFHLQRER--SFPEPRARFYAAEIASALGYLHSLNIIYRDLKPENILLDSQGHVVLTDFGLCKEGI  147 (323)
T ss_pred             CCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCCHHHeEECCCCcEEEeccCCCcccc
Confidence            99999886544  48899999999999999999987        4589999999999999999998643

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=99.89  E-value=3.4e-23  Score=186.65  Aligned_cols=129  Identities=22%  Similarity=0.318  Sum_probs=110.6

Q ss_pred             CCCCccceeeecCceEEEEEEecCC-------------chhHHHHHHHHHHHHhcC-CCccceEEEE-EE---eC---Ce
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNG-------------KEGEREFQAEVEIISRVH-HKHLVSLVGY-YT---AG---SQ  157 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~-------------~~~~~~~~~E~~~l~~l~-hp~iv~~~~~-~~---~~---~~  157 (243)
                      .++.+.+.|.+|+|+.||.|.+...             +...+.+.+||++|+.|. |+|||.+++. ..   .+   -.
T Consensus        37 ~~v~V~~vLAEGGFa~VYla~~~~~~~~~AlKrm~~~de~~L~~v~~EI~~MK~L~gh~nIV~yidss~~~~~~~~~~~E  116 (738)
T KOG1989|consen   37 HRVTVEKVLAEGGFAQVYLAQDVKGGKKYALKRMYVNDEEALNAVKREIDIMKLLSGHKNIVSYIDSSAINRSSNNGVWE  116 (738)
T ss_pred             EEEEEEEEEccCCcEEEEEEEecCCCceeeeeeeecCCHHHHHHHHHHHHHHHHhcCCCceeeEeccccccccCCCceeE
Confidence            4567889999999999999987655             336778899999999996 9999999993 22   11   25


Q ss_pred             eEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc----------CCCcEEECCCCcEEEeccCCceec
Q 039406          158 RMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD----------DLANILLDFKFEAKVADFGLAKIA  227 (243)
Q Consensus       158 ~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~----------~~~NiLl~~~~~~kl~DFG~a~~~  227 (243)
                      ++|+||||.||.|-|++..+....|++.+++.|+.++|.|+.+||.          |++||||+.+|..||||||.|...
T Consensus       117 vllLmEyC~gg~Lvd~mn~Rlq~~lte~eVLkIf~dv~~AVa~mH~~~pPiIHRDLKiENvLls~~g~~KLCDFGSatt~  196 (738)
T KOG1989|consen  117 VLLLMEYCKGGSLVDFMNTRLQTRLTEDEVLKIFYDVCEAVAAMHYLKPPIIHRDLKIENVLLSADGNYKLCDFGSATTK  196 (738)
T ss_pred             EEeehhhccCCcHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcCCCccchhhhhhhheEEcCCCCEEeCcccccccc
Confidence            7899999999999999987766669999999999999999999965          459999999999999999998753

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=99.89  E-value=1.9e-22  Score=166.37  Aligned_cols=128  Identities=23%  Similarity=0.347  Sum_probs=111.5

Q ss_pred             CCCCccceeeecCceEEEEEEecCC-----------------chhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNG-----------------KEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLV  161 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~-----------------~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv  161 (243)
                      ++|.+.+.||+|+||.||+|.++..                 ......+.+|+.+|++++|+||+++++++..++..++|
T Consensus         5 ~~~~~~~~ig~G~fg~V~~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv   84 (266)
T cd05064           5 KSIKIERILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCSDKQRRGFLAEALTLGQFDHSNIVRLEGVITRGNTMMIV   84 (266)
T ss_pred             HHeEEeeeecccCCCeEEEEEEecCCCceeeEEEEecCCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEecCCCcEEE
Confidence            5688899999999999999975421                 11345688999999999999999999999999999999


Q ss_pred             EeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceec
Q 039406          162 YEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIA  227 (243)
Q Consensus       162 ~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~  227 (243)
                      |||+.+|+|.+++..... .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||++...
T Consensus        85 ~e~~~~~~L~~~l~~~~~-~l~~~~~~~~~~~i~~al~~lH~~~iiH~dikp~nili~~~~~~~l~dfg~~~~~  157 (266)
T cd05064          85 TEYMSNGALDSFLRKHEG-QLVAGQLMGMLPGLASGMKYLSEMGYVHKGLAAHKVLVNSDLVCKISGFRRLQED  157 (266)
T ss_pred             EEeCCCCcHHHHHHhCCC-CCCHHHHHHHHHHHHHHHHHHHHCCEeeccccHhhEEEcCCCcEEECCCcccccc
Confidence            999999999999875433 58999999999999999999987        568999999999999999987654

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=99.89  E-value=1.3e-23  Score=173.23  Aligned_cols=133  Identities=25%  Similarity=0.358  Sum_probs=108.0

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch---------hHHHHHHHHHHHHhcCCCccceEEEEEEeCC-----eeEEEEec
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE---------GEREFQAEVEIISRVHHKHLVSLVGYYTAGS-----QRMLVYEF  164 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~---------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-----~~~lv~e~  164 (243)
                      -.|...+++|.|+||.||+|.....++         ..+.-.+|+.+|+.++|||||++.-+|....     ...+||||
T Consensus        24 i~~~~~~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d~r~knrEl~im~~l~HpNIV~L~~~f~~~~~~d~~~lnlVley  103 (364)
T KOG0658|consen   24 ISYEAVRLIGSGSFGVVYQAKLRETEEEVAIKKVLQDKRYKNRELQIMRKLDHPNIVRLLYFFSSSTESDEVYLNLVLEY  103 (364)
T ss_pred             EEEEeeEEEeecccceEEEEEEcCCCceeEEEEecCCCCcCcHHHHHHHhcCCcCeeeEEEEEEecCCCchhHHHHHHHh
Confidence            347778999999999999999877643         2233467999999999999999988776322     45689999


Q ss_pred             cCCCCHHHHhccC--CCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCC-CcEEEeccCCceecCCCCc
Q 039406          165 VLNNTLVFHLHGK--GQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFK-FEAKVADFGLAKIASDVNT  232 (243)
Q Consensus       165 ~~~g~L~~~l~~~--~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~-~~~kl~DFG~a~~~~~~~~  232 (243)
                      |+. +|.+.++..  .+..++...++.+..||++||.|||.        ||.|+|+|.+ |.+||||||.|+.+..++.
T Consensus       104 mP~-tL~~~~r~~~~~~~~mp~~~iKLYt~Qlfrgl~yLh~~~IcHRDIKPqNlLvD~~tg~LKicDFGSAK~L~~~ep  181 (364)
T KOG0658|consen  104 MPE-TLYRVIRHYTRANQRMPLLEIKLYTYQLFRGLAYLHSHGICHRDIKPQNLLVDPDTGVLKICDFGSAKVLVKGEP  181 (364)
T ss_pred             chH-HHHHHHHHHhhcCCCCceeeeHHHHHHHHHHHHHHHhcCcccCCCChheEEEcCCCCeEEeccCCcceeeccCCC
Confidence            976 999888731  22358888899999999999999965        6799999977 9999999999999865544

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=99.89  E-value=2.3e-22  Score=175.45  Aligned_cols=132  Identities=23%  Similarity=0.365  Sum_probs=111.9

Q ss_pred             hCCCCccceeeecCceEEEEEEecCC-------------------chhHHHHHHHHHHHHhcC-CCccceEEEEEEeCCe
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNG-------------------KEGEREFQAEVEIISRVH-HKHLVSLVGYYTAGSQ  157 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~-------------------~~~~~~~~~E~~~l~~l~-hp~iv~~~~~~~~~~~  157 (243)
                      .++|.+.++||+|+||.||+|.+...                   ....+.+.+|+++|++++ ||||+++++++...+.
T Consensus        36 ~~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~~l~~l~~HpnIv~l~~~~~~~~~  115 (400)
T cd05105          36 RDGLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSELKIMTHLGPHLNIVNLLGACTKSGP  115 (400)
T ss_pred             ccceehhheecCCCCceEEEEEEcccCCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhcCCCCCeeeEEEEEccCCc
Confidence            47899999999999999999875321                   113467889999999996 9999999999999999


Q ss_pred             eEEEEeccCCCCHHHHhccCC-----------------------------------------------------------
Q 039406          158 RMLVYEFVLNNTLVFHLHGKG-----------------------------------------------------------  178 (243)
Q Consensus       158 ~~lv~e~~~~g~L~~~l~~~~-----------------------------------------------------------  178 (243)
                      +|||||||++|+|.+++....                                                           
T Consensus       116 ~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (400)
T cd05105         116 IYIITEYCFYGDLVNYLHKNRDNFLSRHPEKPKKDLDIFGINPADESTRSYVILSFENKGDYMDMKQADTTQYVPMLEIK  195 (400)
T ss_pred             eEEEEEecCCCcHHHHHHHhhhhhhccccccccccccccCCCcccccccchhhhhhcccccccccccccccccchhhhhh
Confidence            999999999999998876421                                                           


Q ss_pred             -----------------------------------CCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCc
Q 039406          179 -----------------------------------QPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFE  215 (243)
Q Consensus       179 -----------------------------------~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~  215 (243)
                                                         ...+++..++.++.|++.||.|||.        +++|||++.++.
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivH~dikp~Nill~~~~~  275 (400)
T cd05105         196 EASKYSDIQRSNYDRPASYKGSNDSEVKNLLSDDGSEGLTTLDLLSFTYQVARGMEFLASKNCVHRDLAARNVLLAQGKI  275 (400)
T ss_pred             hhhhhhhcccCcccccccccCcchhhHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChHhEEEeCCCE
Confidence                                               1237788889999999999999987        468999999999


Q ss_pred             EEEeccCCceecCC
Q 039406          216 AKVADFGLAKIASD  229 (243)
Q Consensus       216 ~kl~DFG~a~~~~~  229 (243)
                      +||+|||+++.+..
T Consensus       276 ~kL~DfGla~~~~~  289 (400)
T cd05105         276 VKICDFGLARDIMH  289 (400)
T ss_pred             EEEEeCCcceeccc
Confidence            99999999987643

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=99.89  E-value=2.9e-22  Score=164.23  Aligned_cols=129  Identities=24%  Similarity=0.346  Sum_probs=113.0

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc-----------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccCC
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK-----------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLN  167 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~-----------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~  167 (243)
                      ++|.+.+.||+|+||.||++.++...           .....+.+|+.+|++++|+||+++++++...+..|+||||+++
T Consensus         4 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~a~K~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~iv~e~~~~   83 (256)
T cd05114           4 SELTFMKELGSGQFGVVHLGKWRAQIKVAIKAINEGAMSEEDFIEEAKVMMKLSHPKLVQLYGVCTQQKPLYIVTEFMEN   83 (256)
T ss_pred             HHcEEeeEecCCcCceEEEEEeccCceEEEEecccCCccHHHHHHHHHHHHHCCCCCceeEEEEEccCCCEEEEEEcCCC
Confidence            56888899999999999999765431           1346788999999999999999999999999999999999999


Q ss_pred             CCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          168 NTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       168 g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      |+|.+++..... .+++..++.++.+++.||.|||.        +++||+++.++.+||+|||+++...
T Consensus        84 ~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~ni~i~~~~~~kl~d~g~~~~~~  151 (256)
T cd05114          84 GCLLNYLRQRQG-KLSKDMLLSMCQDVCEGMEYLERNSFIHRDLAARNCLVSSTGVVKVSDFGMTRYVL  151 (256)
T ss_pred             CcHHHHHHhCcc-CCCHHHHHHHHHHHHHHHHHHHHCCccccccCcceEEEcCCCeEEECCCCCccccC
Confidence            999999875433 48899999999999999999987        4689999999999999999998754

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=99.89  E-value=3.8e-22  Score=168.18  Aligned_cols=128  Identities=20%  Similarity=0.281  Sum_probs=112.4

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc--------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEec
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK--------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEF  164 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~--------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  164 (243)
                      ++|.+.+.||+|+||.||++....+.              .....+.+|+++|++++|+||+++++++.+++.+|+||||
T Consensus         1 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ey   80 (308)
T cd06615           1 DDFEKLGELGAGNGGVVTKVLHRPSGLIMARKLIHLEIKPAIRNQIIRELKVLHECNSPYIVGFYGAFYSDGEISICMEH   80 (308)
T ss_pred             CCceEEeeccCCCCeEEEEEEEcCCCeEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCEEEEEeec
Confidence            46899999999999999999765432              1345688999999999999999999999999999999999


Q ss_pred             cCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc---------CCCcEEECCCCcEEEeccCCceecC
Q 039406          165 VLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD---------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       165 ~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~---------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      +++++|.+++...+  .+++..+..++.|++.||.|||.         +++|||++.++.+||+|||++..+.
T Consensus        81 ~~~~~L~~~l~~~~--~~~~~~~~~~~~~i~~~l~~lH~~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~  151 (308)
T cd06615          81 MDGGSLDQVLKKAG--RIPENILGKISIAVLRGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLI  151 (308)
T ss_pred             cCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhhCCEEECCCChHHEEEecCCcEEEccCCCccccc
Confidence            99999999997553  48899999999999999999995         3589999999999999999987654

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=99.89  E-value=2.4e-22  Score=165.08  Aligned_cols=132  Identities=25%  Similarity=0.391  Sum_probs=115.7

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc-----------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccCC
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK-----------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLN  167 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~-----------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~  167 (243)
                      ++|++.++||+|+||.||+|....+.           ...+.+.+|+.++++++|+||+++++++...+..++||||+.+
T Consensus         6 ~~~~~~~~lg~g~~g~v~~~~~~~~~~v~iK~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~   85 (261)
T cd05072           6 ESIKLVKKLGAGQFGEVWMGYYNNSTKVAVKTLKPGTMSVQAFLEEANLMKTLQHDKLVRLYAVVTKEEPIYIITEYMAK   85 (261)
T ss_pred             HHeEEeeecCCcCCceEEEEEecCCceEEEEEccCCchhHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCcEEEEecCCC
Confidence            67899999999999999999754432           1356788999999999999999999999999999999999999


Q ss_pred             CCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          168 NTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       168 g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      ++|.+++.......+++..++.++.+++.+|.|||.        +++|||++.++.+||+|||+++...+.
T Consensus        86 ~~L~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~LH~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~  156 (261)
T cd05072          86 GSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERKNYIHRDLRAANVLVSESLMCKIADFGLARVIEDN  156 (261)
T ss_pred             CcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccccchhhEEecCCCcEEECCCccceecCCC
Confidence            999999876544458888999999999999999987        468999999999999999999887543

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=99.89  E-value=4.3e-22  Score=169.36  Aligned_cols=121  Identities=23%  Similarity=0.340  Sum_probs=105.6

Q ss_pred             ceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhc-CCCccceEEEEEEeCCeeEEEEeccCC
Q 039406          105 NLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRV-HHKHLVSLVGYYTAGSQRMLVYEFVLN  167 (243)
Q Consensus       105 ~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~~~lv~e~~~~  167 (243)
                      +.||+|+||.||++....+..                ..+.+.+|+.++.++ +|+||+++++++.+.+.+|+|||||.+
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   80 (327)
T cd05617           1 RVIGRGSYAKVLLVRLKKNDQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSNPFLVGLHSCFQTTSRLFLVIEYVNG   80 (327)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhhcCCCCEeeEEEEEEeCCEEEEEEeCCCC
Confidence            479999999999998765432                234577899999888 699999999999999999999999999


Q ss_pred             CCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceec
Q 039406          168 NTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIA  227 (243)
Q Consensus       168 g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~  227 (243)
                      ++|.+++...+  .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++..
T Consensus        81 ~~L~~~~~~~~--~l~~~~~~~~~~qi~~al~~lH~~~ivHrDlkp~Nili~~~~~~kl~Dfg~~~~~  146 (327)
T cd05617          81 GDLMFHMQRQR--KLPEEHARFYAAEICIALNFLHERGIIYRDLKLDNVLLDADGHIKLTDYGMCKEG  146 (327)
T ss_pred             CcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEEeCCCCEEEeccccceec
Confidence            99998886543  48999999999999999999986        468999999999999999999864

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=99.89  E-value=3.6e-22  Score=169.52  Aligned_cols=127  Identities=24%  Similarity=0.345  Sum_probs=108.7

Q ss_pred             CCCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhcC-CCccceEEEEEEeCCeeEEEE
Q 039406          100 GFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRVH-HKHLVSLVGYYTAGSQRMLVY  162 (243)
Q Consensus       100 ~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l~-hp~iv~~~~~~~~~~~~~lv~  162 (243)
                      +|...+.||+|+||.||+|....+.+                ..+.+..|+.+++.+. |++|+++++++.+.+.+|+||
T Consensus         1 ~f~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (323)
T cd05615           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALQDKPPFLTQLHSCFQTVDRLYFVM   80 (323)
T ss_pred             CceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCchhheeeEEecCCEEEEEE
Confidence            47788999999999999998765422                2345677888888885 577888999999999999999


Q ss_pred             eccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          163 EFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       163 e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      ||+++|+|.+++...+  .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++...
T Consensus        81 Ey~~~g~L~~~i~~~~--~l~~~~~~~i~~qi~~al~~lH~~~ivHrDikp~Nill~~~~~ikL~Dfg~~~~~~  152 (323)
T cd05615          81 EYVNGGDLMYHIQQVG--KFKEPQAVFYAAEISVGLFFLHRRGIIYRDLKLDNVMLDSEGHIKIADFGMCKEHM  152 (323)
T ss_pred             cCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEEeccccccccC
Confidence            9999999999986544  48999999999999999999987        4689999999999999999998653

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=99.88  E-value=4.1e-22  Score=169.28  Aligned_cols=121  Identities=28%  Similarity=0.387  Sum_probs=102.2

Q ss_pred             ceeeecCceEEEEEEecCCch----------------hHHHHHHHHH-HHHhcCCCccceEEEEEEeCCeeEEEEeccCC
Q 039406          105 NLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVE-IISRVHHKHLVSLVGYYTAGSQRMLVYEFVLN  167 (243)
Q Consensus       105 ~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~-~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~  167 (243)
                      +.||+|+||.||+++...+.+                ....+.+|.. +++.++|+||+++++++..++.+|+||||+.+
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~hp~iv~~~~~~~~~~~~~lv~e~~~~   80 (325)
T cd05604           1 KVIGKGSFGKVLLAKRKLDGKCYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTTEKLYFVLDFVNG   80 (325)
T ss_pred             CceeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHHhCCCCCCccEEEEEecCCEEEEEEcCCCC
Confidence            479999999999998654421                2234455554 56779999999999999999999999999999


Q ss_pred             CCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceec
Q 039406          168 NTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIA  227 (243)
Q Consensus       168 g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~  227 (243)
                      |+|..++....  .+++..++.++.||+.||.|||.        +++|||++.++.+||+|||+++..
T Consensus        81 ~~L~~~l~~~~--~~~~~~~~~~~~qi~~al~~lH~~givH~Dlkp~NIll~~~~~~kL~DfG~~~~~  146 (325)
T cd05604          81 GELFFHLQRER--SFPEPRARFYAAEIASALGYLHSINIVYRDLKPENILLDSQGHVVLTDFGLCKEG  146 (325)
T ss_pred             CCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHeEECCCCCEEEeecCCcccC
Confidence            99998886544  48999999999999999999987        468999999999999999999864

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.88  E-value=6.1e-24  Score=178.57  Aligned_cols=141  Identities=24%  Similarity=0.344  Sum_probs=123.0

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch--------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEec
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE--------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEF  164 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~--------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  164 (243)
                      ..|...++||+|.||.||+|.+..+++              ..+.+..|+.+|..++++||.++|+.|..+..+|++|||
T Consensus        13 ~~~~~~~~IgrGsfG~Vyk~~d~~t~k~vAiKii~Le~~~deIediqqei~~Ls~~~~~~it~yygsyl~g~~LwiiMey   92 (467)
T KOG0201|consen   13 LLYTKLELIGRGSFGEVYKAIDNKTKKVVAIKIIDLEEAEDEIEDIQQEISVLSQCDSPNITEYYGSYLKGTKLWIIMEY   92 (467)
T ss_pred             cccccchhccccccceeeeeeeccccceEEEEEechhhcchhhHHHHHHHHHHHhcCcchHHhhhhheeecccHHHHHHH
Confidence            457778999999999999998776643              456788899999999999999999999999999999999


Q ss_pred             cCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCceeee
Q 039406          165 VLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNTHVST  236 (243)
Q Consensus       165 ~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~~~~~  236 (243)
                      |.||++.+.++...  .+.+..+..++++++.||.|||.        |..|||+..+|.+||+|||++..+....... .
T Consensus        93 ~~gGsv~~lL~~~~--~~~E~~i~~ilre~l~~l~ylH~~~kiHrDIKaanil~s~~g~vkl~DfgVa~ql~~~~~rr-~  169 (467)
T KOG0201|consen   93 CGGGSVLDLLKSGN--ILDEFEIAVILREVLKGLDYLHSEKKIHRDIKAANILLSESGDVKLADFGVAGQLTNTVKRR-K  169 (467)
T ss_pred             hcCcchhhhhccCC--CCccceeeeehHHHHHHhhhhhhcceecccccccceeEeccCcEEEEecceeeeeechhhcc-c
Confidence            99999999997544  45888888999999999999976        4589999999999999999999987766544 5


Q ss_pred             cccccc
Q 039406          237 RVMGTF  242 (243)
Q Consensus       237 ~~~GT~  242 (243)
                      +++|||
T Consensus       170 tfvGTP  175 (467)
T KOG0201|consen  170 TFVGTP  175 (467)
T ss_pred             cccccc
Confidence            688986

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.88  E-value=9.9e-23  Score=189.02  Aligned_cols=129  Identities=29%  Similarity=0.463  Sum_probs=112.3

Q ss_pred             CCCCccceeeecCceEEEEEEecCC-------------------chhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNG-------------------KEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRM  159 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~-------------------~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~  159 (243)
                      +.....+.||+|.||.||.|.+..-                   .+....|++|..+|++++|||||+++|++.+....+
T Consensus       692 ~~v~l~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~~~~~~~~Fl~Ea~~m~~f~HpNiv~liGv~l~~~~~~  771 (1025)
T KOG1095|consen  692 KNVTLLRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRLSSEQEVSDFLKEALLMSKFDHPNIVSLIGVCLDSGPPL  771 (1025)
T ss_pred             hheEeeeeeccccccceEEEEEecCCCCccceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCcceeeEEEeecCCCCcE
Confidence            3455678999999999999975432                   235678999999999999999999999999999999


Q ss_pred             EEEeccCCCCHHHHhccCC-----CCCCCHHHHHHHHHHHHHhhhHh------hcCC--CcEEECCCCcEEEeccCCcee
Q 039406          160 LVYEFVLNNTLVFHLHGKG-----QPTMDWPTRIKIALGSAKGLAYL------HDDL--ANILLDFKFEAKVADFGLAKI  226 (243)
Q Consensus       160 lv~e~~~~g~L~~~l~~~~-----~~~l~~~~~~~i~~~i~~~l~~l------H~~~--~NiLl~~~~~~kl~DFG~a~~  226 (243)
                      |++|||++|+|..+|++.+     ...+...+.+.++.||++|+.||      |||+  .|+||+....|||+|||+||-
T Consensus       772 i~leyM~gGDL~sflr~~r~~~~~~~~L~~~dLl~~a~dvA~G~~YLe~~~fvHRDLAaRNCLL~~~r~VKIaDFGlArD  851 (1025)
T KOG1095|consen  772 ILLEYMEGGDLLSFLRESRPAPFQPSNLSMRDLLAFALDVAKGMNYLESKHFVHRDLAARNCLLDERRVVKIADFGLARD  851 (1025)
T ss_pred             EEehhcccCcHHHHHHhcccccCCCCCCCHHHHHHHHHHHhhhhHHHHhCCCcCcchhhhheeecccCcEEEcccchhHh
Confidence            9999999999999998651     22478889999999999999998      6777  499999999999999999994


Q ss_pred             c
Q 039406          227 A  227 (243)
Q Consensus       227 ~  227 (243)
                      +
T Consensus       852 i  852 (1025)
T KOG1095|consen  852 I  852 (1025)
T ss_pred             h
Confidence            3

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=99.88  E-value=5.6e-22  Score=164.96  Aligned_cols=124  Identities=26%  Similarity=0.352  Sum_probs=105.3

Q ss_pred             eeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccCCCCH
Q 039406          107 LRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTL  170 (243)
Q Consensus       107 lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~g~L  170 (243)
                      ||+|+||.||++.++.+.+                ..+.+..|+++|+.++|+||+++++++..++.+|+||||+++|+|
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~g~L   80 (280)
T cd05608           1 LGKGGFGEVSACQMRATGKLYACKKLNKKRLKKRKGYEGAMVEKRILAKVHSRFIVSLAYAFQTKTDLCLVMTIMNGGDL   80 (280)
T ss_pred             CCCCCceeEEEEEEccCCcEEEEEeeeHHHHhhhHHHHHHHHHHHHHHhCCCCcEeeeeEEEcCCCeEEEEEeCCCCCCH
Confidence            6999999999998664421                224567899999999999999999999999999999999999999


Q ss_pred             HHHhccC--CCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          171 VFHLHGK--GQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       171 ~~~l~~~--~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      .+++...  ....+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++.+...
T Consensus        81 ~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~  150 (280)
T cd05608          81 RYHIYNVDEENPGFPEPRACFYTAQIISGLEHLHQRRIIYRDLKPENVLLDNDGNVRISDLGLAVELKDG  150 (280)
T ss_pred             HHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEeeCccceecCCC
Confidence            8877432  22358999999999999999999987        458999999999999999999876543

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=99.88  E-value=3.8e-22  Score=184.24  Aligned_cols=129  Identities=25%  Similarity=0.320  Sum_probs=114.1

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVY  162 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  162 (243)
                      ++|.+.+.||+|+||.||+|++.....                ....+.+|+.+++.++|+||+++++++...+.+||||
T Consensus         4 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiKvi~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lVm   83 (669)
T cd05610           4 EEFVIVKPISRGAFGKVYLGRKKNNSKLYAVKVVKKADMINKNMVHQVQAERDALALSKSPFIVHLYYSLQSANNVYLVM   83 (669)
T ss_pred             CCEEEEEEEecCCCeEEEEEEECCCCcEEEEEEEehhhccCHHHHHHHHHHHHHHHhcCCCCcCeEEEEEEECCEEEEEE
Confidence            689999999999999999998764321                2367888999999999999999999999999999999


Q ss_pred             eccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          163 EFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       163 e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      ||+.+++|.+++...+  .+.+..++.|+.||+.||.|||.        +|+||||+.++.+||+|||+++....
T Consensus        84 Ey~~g~~L~~li~~~~--~l~~~~~~~i~~qil~aL~yLH~~gIiHrDLKP~NILl~~~g~vkL~DFGls~~~~~  156 (669)
T cd05610          84 EYLIGGDVKSLLHIYG--YFDEEMAVKYISEVALALDYLHRHGIIHRDLKPDNMLISNEGHIKLTDFGLSKVTLN  156 (669)
T ss_pred             eCCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCCEEeCCccHHHEEEcCCCCEEEEeCCCCccccC
Confidence            9999999999997544  47888999999999999999986        56899999999999999999997654

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=99.88  E-value=6.4e-22  Score=167.53  Aligned_cols=121  Identities=27%  Similarity=0.394  Sum_probs=103.8

Q ss_pred             ceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhc-CCCccceEEEEEEeCCeeEEEEeccCC
Q 039406          105 NLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRV-HHKHLVSLVGYYTAGSQRMLVYEFVLN  167 (243)
Q Consensus       105 ~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~~~lv~e~~~~  167 (243)
                      ++||+|+||.||+|+.+.+.+                ....+..|..++..+ +|+||+++++++.+++.+|+||||+.+
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~~~~   80 (316)
T cd05620           1 KVLGKGSFGKVLLAELKGKGEYFAVKALKKDVVLIDDDVECTMVEKRVLALAWENPFLTHLYCTFQTKEHLFFVMEFLNG   80 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCCccCeeEEEEeCCEEEEEECCCCC
Confidence            479999999999998765432                234456778888764 899999999999999999999999999


Q ss_pred             CCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceec
Q 039406          168 NTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIA  227 (243)
Q Consensus       168 g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~  227 (243)
                      |+|.+++....  .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++..
T Consensus        81 g~L~~~i~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~ivHrDlkp~Nil~~~~~~~kl~Dfg~~~~~  146 (316)
T cd05620          81 GDLMFHIQDKG--RFDLYRATFYAAEIVCGLQFLHSKGIIYRDLKLDNVMLDRDGHIKIADFGMCKEN  146 (316)
T ss_pred             CcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEECCCCCEEeCccCCCeec
Confidence            99999886543  48899999999999999999986        568999999999999999999854

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=99.88  E-value=2.3e-22  Score=174.22  Aligned_cols=132  Identities=24%  Similarity=0.380  Sum_probs=111.5

Q ss_pred             hCCCCccceeeecCceEEEEEEecC-----C--------------chhHHHHHHHHHHHHhc-CCCccceEEEEEEeCCe
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPN-----G--------------KEGEREFQAEVEIISRV-HHKHLVSLVGYYTAGSQ  157 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~-----~--------------~~~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~  157 (243)
                      .++|.+.+.||+|+||.||+|.+..     +              ....+.+.+|+.+|+.+ +||||+++++++...+.
T Consensus        34 ~~~~~~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~il~~l~~HpnIv~l~~~~~~~~~  113 (375)
T cd05104          34 RNRLSFGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHINIVNLLGACTVGGP  113 (375)
T ss_pred             hHHeehhheecCCccceEEEEEEeccccCccceeEEEEeccCCcCcHHHHHHHHHHHHHHHhcCCcceeeeeeeeccCCc
Confidence            3578899999999999999986321     0              11345688999999999 89999999999999999


Q ss_pred             eEEEEeccCCCCHHHHhccCC-----------------------------------------------------------
Q 039406          158 RMLVYEFVLNNTLVFHLHGKG-----------------------------------------------------------  178 (243)
Q Consensus       158 ~~lv~e~~~~g~L~~~l~~~~-----------------------------------------------------------  178 (243)
                      .++|||||.+|+|.+++....                                                           
T Consensus       114 ~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (375)
T cd05104         114 TLVITEYCCYGDLLNFLRRKRDSFICPKHEDHAEAALYKNLLHQREMSCDSLNEYMDMKPGVSYVVPTKADKRRSVRSGS  193 (375)
T ss_pred             ceeeehhccCCcHHHHHHhcccccccccccchhhhHHHHhhhhhhcccchhhhhhhhcCCCcccccccccccccccccce
Confidence            999999999999999886432                                                           


Q ss_pred             --------------CCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          179 --------------QPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       179 --------------~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                                    ...+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++.+..
T Consensus       194 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nill~~~~~~kl~DfG~a~~~~~  266 (375)
T cd05104         194 YIDQDVTSEILEEDELALDTEDLLSFSYQVAKGMSFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIRN  266 (375)
T ss_pred             ecccccHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCchhhEEEECCCcEEEecCccceeccC
Confidence                          1136788899999999999999986        56899999999999999999987654

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=99.88  E-value=6.3e-22  Score=165.31  Aligned_cols=130  Identities=29%  Similarity=0.354  Sum_probs=114.3

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc----------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK----------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVY  162 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~----------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  162 (243)
                      ++|.+.+.||+|+||.||++......                +..+.+.+|+++|++++|+||+++++++...+..|+||
T Consensus         1 ~~y~~~~~ig~g~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   80 (290)
T cd05580           1 DDFEFIKTLGTGSFGRVMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSIRHPFLVNLYGSFQDDSNLYLVM   80 (290)
T ss_pred             CceEEEEEeecCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCccceeeEEEcCCeEEEEE
Confidence            46888999999999999999876532                13456788999999999999999999999999999999


Q ss_pred             eccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          163 EFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       163 e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      ||+.+++|.+++....  .+++..++.++.|++.+|.|||.        ++.|||++.++.+||+|||+++.....
T Consensus        81 e~~~~~~L~~~~~~~~--~l~~~~~~~~~~qil~~l~~lH~~~i~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~  154 (290)
T cd05580          81 EYVPGGELFSHLRKSG--RFPEPVARFYAAQVVLALEYLHSLDIVYRDLKPENLLLDSDGYIKITDFGFAKRVKGR  154 (290)
T ss_pred             ecCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEECCCCCEEEeeCCCccccCCC
Confidence            9999999999987654  48899999999999999999987        458999999999999999999886543

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=99.88  E-value=4.3e-22  Score=172.19  Aligned_cols=127  Identities=18%  Similarity=0.270  Sum_probs=108.7

Q ss_pred             CCCccceeeecCceEEEEEEecCCch---------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCC-----eeE
Q 039406          100 GFSDANLLRQDGFGYVHRGVLPNGKE---------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGS-----QRM  159 (243)
Q Consensus       100 ~~~~~~~lg~G~~g~V~~~~~~~~~~---------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-----~~~  159 (243)
                      +|+..+.||+|+||.||++....+.+               ..+.+.+|+++|+.++|+||+++++++...+     .+|
T Consensus         1 ~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~   80 (372)
T cd07853           1 DVEPDRPIGYGAFGVVWSVTDPRDGKRVALKKMPNVFQNLVSCKRVFRELKMLCFFKHDNVLSALDILQPPHIDPFEEIY   80 (372)
T ss_pred             CCcccceeeeCCCEEEEEEEECCCCCEEEEEeccccccchHHHHHHHHHHHHHHhCCCCCcCCHhheecCCCccccceEE
Confidence            47888999999999999998653321               3456889999999999999999999998776     799


Q ss_pred             EEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          160 LVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       160 lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      +||||+. ++|.+++....  .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++....
T Consensus        81 lv~e~~~-~~l~~~~~~~~--~l~~~~~~~~~~qi~~aL~~LH~~~ivH~dlkp~Nili~~~~~~kL~Dfg~a~~~~~  155 (372)
T cd07853          81 VVTELMQ-SDLHKIIVSPQ--PLSSDHVKVFLYQILRGLKYLHSAGILHRDIKPGNLLVNSNCVLKICDFGLARVEEP  155 (372)
T ss_pred             EEeeccc-cCHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChHHEEECCCCCEEeccccceeeccc
Confidence            9999996 58888775443  48999999999999999999987        56899999999999999999987643

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=99.88  E-value=5.6e-23  Score=182.99  Aligned_cols=131  Identities=27%  Similarity=0.447  Sum_probs=117.3

Q ss_pred             CCccceeeecCceEEEEEEecCC-----------------chhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEe
Q 039406          101 FSDANLLRQDGFGYVHRGVLPNG-----------------KEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYE  163 (243)
Q Consensus       101 ~~~~~~lg~G~~g~V~~~~~~~~-----------------~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e  163 (243)
                      ..+.++||.|.||+||+|+++.-                 ++.+..|+.|..||.+++||||++|.|+......+.||.|
T Consensus       631 i~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~GytekqrrdFL~EAsIMGQFdHPNIIrLEGVVTks~PvMIiTE  710 (996)
T KOG0196|consen  631 VKIEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIRLEGVVTKSKPVMIITE  710 (996)
T ss_pred             eEEEEEEecccccceecccccCCCCcceeEEEeeeccCccHHHHhhhhhhhhhcccCCCCcEEEEEEEEecCceeEEEhh
Confidence            45688999999999999987643                 2367789999999999999999999999999999999999


Q ss_pred             ccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHh------hcCC--CcEEECCCCcEEEeccCCceecCCCCc
Q 039406          164 FVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL------HDDL--ANILLDFKFEAKVADFGLAKIASDVNT  232 (243)
Q Consensus       164 ~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~l------H~~~--~NiLl~~~~~~kl~DFG~a~~~~~~~~  232 (243)
                      ||++|+|..+|+.+..+ +.+.+....++.|+.|++||      |||+  -|||++.+..+|++|||++|.+.++..
T Consensus       711 yMENGsLDsFLR~~DGq-ftviQLVgMLrGIAsGMkYLsdm~YVHRDLAARNILVNsnLvCKVsDFGLSRvledd~~  786 (996)
T KOG0196|consen  711 YMENGSLDSFLRQNDGQ-FTVIQLVGMLRGIASGMKYLSDMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPE  786 (996)
T ss_pred             hhhCCcHHHHHhhcCCc-eEeehHHHHHHHHHHHhHHHhhcCchhhhhhhhheeeccceEEEeccccceeecccCCC
Confidence            99999999999877654 99999999999999999987      9998  499999999999999999999876653

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=99.88  E-value=1.7e-23  Score=176.55  Aligned_cols=142  Identities=27%  Similarity=0.353  Sum_probs=115.8

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc--------------------hhHHHHHHHHHHHHhcCCCccceEEEEEE-eCCe
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK--------------------EGEREFQAEVEIISRVHHKHLVSLVGYYT-AGSQ  157 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~--------------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~-~~~~  157 (243)
                      ++|-.+.+||+|+|+.||++.+....                    ...+-..+|..|.+.|+||.||++|++|. +.+.
T Consensus       463 ~RYLlLhLLGrGGFSEVyKAFDl~EqRYvAvKIHqlNK~WrdEKKeNYhKHAcREyrIHKeLDHpRIVKlYDyfslDtds  542 (775)
T KOG1151|consen  463 DRYLLLHLLGRGGFSEVYKAFDLTEQRYVAVKIHQLNKNWRDEKKENYHKHACREYRIHKELDHPRIVKLYDYFSLDTDS  542 (775)
T ss_pred             HHHHHHHHhccccHHHHHHhcccchhheeeEeeehhccchhhHhhhhHHHHHHHHHhhhhccCcceeeeeeeeeeecccc
Confidence            34667889999999999999643321                    13345678999999999999999999986 5667


Q ss_pred             eEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc----------CCCcEEEC---CCCcEEEeccCCc
Q 039406          158 RMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD----------DLANILLD---FKFEAKVADFGLA  224 (243)
Q Consensus       158 ~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~----------~~~NiLl~---~~~~~kl~DFG~a  224 (243)
                      +|-|+|||+|.+|.-+++..+  .+++.+++.|+.||+.||.||..          ||.|||+.   ..|.+||+||||+
T Consensus       543 FCTVLEYceGNDLDFYLKQhk--lmSEKEARSIiMQiVnAL~YLNEikpPIIHYDLKPgNILLv~GtacGeIKITDFGLS  620 (775)
T KOG1151|consen  543 FCTVLEYCEGNDLDFYLKQHK--LMSEKEARSIIMQIVNALKYLNEIKPPIIHYDLKPGNILLVNGTACGEIKITDFGLS  620 (775)
T ss_pred             ceeeeeecCCCchhHHHHhhh--hhhHHHHHHHHHHHHHHHHHHhccCCCeeeeccCCccEEEecCcccceeEeeecchh
Confidence            999999999999999997655  58999999999999999999954          56899994   3489999999999


Q ss_pred             eecCCCCce------eeecccccc
Q 039406          225 KIASDVNTH------VSTRVMGTF  242 (243)
Q Consensus       225 ~~~~~~~~~------~~~~~~GT~  242 (243)
                      +++.++...      .++..+||+
T Consensus       621 KIMdddSy~~vdGmeLTSQgAGTY  644 (775)
T KOG1151|consen  621 KIMDDDSYNSVDGMELTSQGAGTY  644 (775)
T ss_pred             hhccCCccCcccceeeecccCcee
Confidence            999765432      345567774

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=99.88  E-value=5.9e-22  Score=162.60  Aligned_cols=131  Identities=27%  Similarity=0.375  Sum_probs=113.9

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc-----------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccCC
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK-----------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLN  167 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~-----------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~  167 (243)
                      ++|.+.+.||+|+||.||++.+....           .....+.+|+.++++++|+||+++++++...+.+|+||||+.+
T Consensus         4 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~aik~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~   83 (256)
T cd05113           4 KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMKLSHEKLVQLYGVCTKQRPIYIVTEYMSN   83 (256)
T ss_pred             HHeEEeeEecCcccceEEEEEecCCCcEEEEEcCCCcccHHHHHHHHHHHhcCCCCCeeeEEEEEccCCCcEEEEEcCCC
Confidence            46788899999999999999765432           1245688999999999999999999999999999999999999


Q ss_pred             CCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          168 NTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       168 g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      ++|.+++..... .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++.....
T Consensus        84 ~~l~~~i~~~~~-~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~nili~~~~~~kl~d~g~~~~~~~~  153 (256)
T cd05113          84 GCLLNYLREHGK-RFQPSQLLEMCKDVCEGMAYLESKQFIHRDLAARNCLVDDQGCVKVSDFGLSRYVLDD  153 (256)
T ss_pred             CcHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHHhCCeeccccCcceEEEcCCCCEEECCCccceecCCC
Confidence            999999875443 58999999999999999999986        568999999999999999999876543

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.88  E-value=1.1e-23  Score=184.17  Aligned_cols=142  Identities=22%  Similarity=0.324  Sum_probs=119.1

Q ss_pred             CCCCccceeeecCceEEEEEEecCC-------------chhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEecc
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNG-------------KEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFV  165 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~-------------~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~  165 (243)
                      +.|.++..||.|+||.||+++.+..             .+.++.|+-||+||..++||+||+|++.|...+.+||+.|||
T Consensus        32 d~WeIiGELGDGAFGKVyKA~nket~~lAAaKvIetkseEELEDylVEIeILa~CdHP~ivkLl~ayy~enkLwiliEFC  111 (1187)
T KOG0579|consen   32 DHWEIIGELGDGAFGKVYKAVNKETKLLAAAKVIETKSEEELEDYLVEIEILAECDHPVIVKLLSAYYFENKLWILIEFC  111 (1187)
T ss_pred             HHHHHHhhhcCccchhhhhhhcccchhhhhhhhhcccchhHHhhhhhhhhhhhcCCChHHHHHHHHHhccCceEEEEeec
Confidence            3456677899999999999986643             235778899999999999999999999999999999999999


Q ss_pred             CCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc------C--CCcEEECCCCcEEEeccCCceecCCCCceeeec
Q 039406          166 LNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD------D--LANILLDFKFEAKVADFGLAKIASDVNTHVSTR  237 (243)
Q Consensus       166 ~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~------~--~~NiLl~~~~~~kl~DFG~a~~~~~~~~~~~~~  237 (243)
                      .||.+..++...+. .|.+.++..++.++|.||.|||.      |  ..|||++.+|.++|+|||++........ ...+
T Consensus       112 ~GGAVDaimlEL~r-~LtE~QIqvvc~q~ldALn~LHs~~iIHRDLKAGNiL~TldGdirLADFGVSAKn~~t~q-kRDs  189 (1187)
T KOG0579|consen  112 GGGAVDAIMLELGR-VLTEDQIQVVCYQVLDALNWLHSQNIIHRDLKAGNILLTLDGDIRLADFGVSAKNKSTRQ-KRDS  189 (1187)
T ss_pred             CCchHhHHHHHhcc-ccchHHHHHHHHHHHHHHHHHhhcchhhhhccccceEEEecCcEeeecccccccchhHHh-hhcc
Confidence            99999888876655 59999999999999999999976      3  3799999999999999999876433222 2334


Q ss_pred             ccccc
Q 039406          238 VMGTF  242 (243)
Q Consensus       238 ~~GT~  242 (243)
                      ++|||
T Consensus       190 FIGTP  194 (1187)
T KOG0579|consen  190 FIGTP  194 (1187)
T ss_pred             ccCCc
Confidence            77776

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=99.88  E-value=8e-22  Score=167.05  Aligned_cols=121  Identities=29%  Similarity=0.443  Sum_probs=105.4

Q ss_pred             ceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhc-CCCccceEEEEEEeCCeeEEEEeccCC
Q 039406          105 NLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRV-HHKHLVSLVGYYTAGSQRMLVYEFVLN  167 (243)
Q Consensus       105 ~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~~~lv~e~~~~  167 (243)
                      +.||+|+||.||++.+..+..                ....+.+|+++++.+ +|+||+++++++.+.+.+|+||||+.+
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~   80 (318)
T cd05570           1 KVLGKGSFGKVLLAELKGTDELYAVKVLKKDVILQDDDVECTMTEKRVLALAGKHPFLTQLHSCFQTKDRLFFVMEYVNG   80 (318)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            479999999999998765431                234567888899888 799999999999999999999999999


Q ss_pred             CCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceec
Q 039406          168 NTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIA  227 (243)
Q Consensus       168 g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~  227 (243)
                      ++|..++....  .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++..
T Consensus        81 ~~L~~~~~~~~--~l~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~  146 (318)
T cd05570          81 GDLMFHIQRSG--RFDEPRARFYAAEIVLGLQFLHERGIIYRDLKLDNVLLDSEGHIKIADFGMCKEG  146 (318)
T ss_pred             CCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHhCCeEccCCCHHHeEECCCCcEEecccCCCeec
Confidence            99999886554  48999999999999999999987        468999999999999999999764

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=99.88  E-value=1.2e-21  Score=165.87  Aligned_cols=121  Identities=28%  Similarity=0.410  Sum_probs=103.9

Q ss_pred             ceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhc-CCCccceEEEEEEeCCeeEEEEeccCC
Q 039406          105 NLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRV-HHKHLVSLVGYYTAGSQRMLVYEFVLN  167 (243)
Q Consensus       105 ~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~~~lv~e~~~~  167 (243)
                      +.||+|+||.||+|....+.+                ....+..|..++..+ +||||+++++++.+.+.+|+||||+.+
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~ey~~~   80 (316)
T cd05619           1 KMLGKGSFGKVFLAELKGTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHLYCTFQTKENLFFVMEYLNG   80 (316)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCcCcceEEEEEeCCEEEEEEeCCCC
Confidence            479999999999998765431                233456677888764 899999999999999999999999999


Q ss_pred             CCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceec
Q 039406          168 NTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIA  227 (243)
Q Consensus       168 g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~  227 (243)
                      |+|.+++....  .+++..+..++.|++.||.|||.        +++|||++.++.+||+|||+++..
T Consensus        81 g~L~~~l~~~~--~~~~~~~~~~~~qi~~al~~LH~~~ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~  146 (316)
T cd05619          81 GDLMFHIQSCH--KFDLPRATFYAAEIICGLQFLHSKGIVYRDLKLDNILLDTDGHIKIADFGMCKEN  146 (316)
T ss_pred             CcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHhCCeEeCCCCHHHEEECCCCCEEEccCCcceEC
Confidence            99999986543  48889999999999999999987        468999999999999999999864

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=99.88  E-value=1.2e-21  Score=161.38  Aligned_cols=128  Identities=23%  Similarity=0.290  Sum_probs=112.7

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc-------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEecc
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK-------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFV  165 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~-------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~  165 (243)
                      ++|.+.+.||+|+||.||+|+...+.             .....+.+|+.++++++|+||+++++++...+.+|+||||+
T Consensus         9 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~~e~~~l~~~~h~~ii~~~~~~~~~~~~~iv~e~~   88 (267)
T cd06646           9 HDYELIQRVGSGTYGDVYKARNLHTGELAAVKIIKLEPGDDFSLIQQEIFMVKECKHCNIVAYFGSYLSREKLWICMEYC   88 (267)
T ss_pred             hhcchhheeecCCCeEEEEEEECCCCeEEEEEEEecCccchHHHHHHHHHHHHhcCCCCeeeeeEEEEeCCEEEEEEeCC
Confidence            67999999999999999999865432             13446778999999999999999999999999999999999


Q ss_pred             CCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          166 LNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       166 ~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      .+++|.+++...+  .+++..+..++.|++.+|.|||.        +++|||++.++.+||+|||+++.+.
T Consensus        89 ~~~~L~~~~~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nill~~~~~~~l~dfg~~~~~~  157 (267)
T cd06646          89 GGGSLQDIYHVTG--PLSELQIAYVCRETLQGLAYLHSKGKMHRDIKGANILLTDNGDVKLADFGVAAKIT  157 (267)
T ss_pred             CCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEECCCCCEEECcCccceeec
Confidence            9999999886543  48899999999999999999987        4589999999999999999998764

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=99.88  E-value=3.1e-22  Score=173.27  Aligned_cols=132  Identities=25%  Similarity=0.380  Sum_probs=111.2

Q ss_pred             hCCCCccceeeecCceEEEEEEecCC-------------------chhHHHHHHHHHHHHhc-CCCccceEEEEEEeCCe
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNG-------------------KEGEREFQAEVEIISRV-HHKHLVSLVGYYTAGSQ  157 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~-------------------~~~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~  157 (243)
                      .++|.+.+.||+|+||.||+|+....                   ......+.+|+.+|+.+ +|+|||++++++...+.
T Consensus        37 ~~~~~~~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~~h~nIv~~~~~~~~~~~  116 (374)
T cd05106          37 RDNLQFGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASAHTDEREALMSELKILSHLGQHKNIVNLLGACTHGGP  116 (374)
T ss_pred             HHHceehheecCCCcccEEEEEEecCCcccccceeEEEeccCCCCHHHHHHHHHHHHHHHhhccCCceeeEeeEecCCCC
Confidence            36789999999999999999874221                   11245678999999999 89999999999999999


Q ss_pred             eEEEEeccCCCCHHHHhccCC-----------------------------------------------------------
Q 039406          158 RMLVYEFVLNNTLVFHLHGKG-----------------------------------------------------------  178 (243)
Q Consensus       158 ~~lv~e~~~~g~L~~~l~~~~-----------------------------------------------------------  178 (243)
                      +|+|||||.+|+|.+++....                                                           
T Consensus       117 ~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (374)
T cd05106         117 VLVITEYCCYGDLLNFLRKKAETFLNFVMALPEISETSSDYKNITLEKKYIRSDSGFSSQGSDTYVEMRPVSSSSSQSSD  196 (374)
T ss_pred             eEEeHhhccCCcHHHHHHhhhhhhccccccccccccccccccccchhcccccccccccccccccccccCCcccccccccc
Confidence            999999999999999885321                                                           


Q ss_pred             ---------CCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          179 ---------QPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       179 ---------~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                               ...+++..++.++.|++.||.|||.        +++|||+++++.+||+|||+++.+..
T Consensus       197 ~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~yLH~~giiHrDLkp~Nil~~~~~~~kL~DfGla~~~~~  264 (374)
T cd05106         197 SKDEEDTEDSWPLDLDDLLRFSSQVAQGMDFLASKNCIHRDVAARNVLLTDGRVAKICDFGLARDIMN  264 (374)
T ss_pred             ccchhccCCCCCcCHHHHHHHHHHHHHHHHHHHHCCEEeccCchheEEEeCCCeEEEeeceeeeeccC
Confidence                     1236788899999999999999986        56899999999999999999987643

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=99.88  E-value=8.6e-22  Score=162.43  Aligned_cols=131  Identities=27%  Similarity=0.415  Sum_probs=113.9

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc-----------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK-----------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLV  161 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~-----------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv  161 (243)
                      .+|.+.+.||+|+||.||+|.+....                 ...+.+.+|+.+|++++|+||+++++++..++..|+|
T Consensus         4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   83 (267)
T cd05066           4 SCIKIEKVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSKPVMIV   83 (267)
T ss_pred             HHeEeeeeecccCCCceEEEEEecCCCCceEEEEEECCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCccEEE
Confidence            56888899999999999999764211                 1345788999999999999999999999999999999


Q ss_pred             EeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          162 YEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       162 ~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      |||+++++|.+++..... .+++..++.++.|++.+|.|||.        +++|||++.++.+||+|||+++.+...
T Consensus        84 ~e~~~~~~L~~~~~~~~~-~~~~~~~~~i~~~i~~~l~~lH~~~i~h~dlkp~nili~~~~~~~l~dfg~~~~~~~~  159 (267)
T cd05066          84 TEYMENGSLDAFLRKHDG-QFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDD  159 (267)
T ss_pred             EEcCCCCCHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHHHCCEeehhhchhcEEECCCCeEEeCCCCcccccccc
Confidence            999999999999976543 48999999999999999999987        569999999999999999999877543

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=99.88  E-value=6.3e-22  Score=168.54  Aligned_cols=126  Identities=17%  Similarity=0.305  Sum_probs=106.7

Q ss_pred             CCCccceeeecCceEEEEEEecCCch---------------hHHHHHHHHHHHHhcCCCccceEEEEEEeC-----CeeE
Q 039406          100 GFSDANLLRQDGFGYVHRGVLPNGKE---------------GEREFQAEVEIISRVHHKHLVSLVGYYTAG-----SQRM  159 (243)
Q Consensus       100 ~~~~~~~lg~G~~g~V~~~~~~~~~~---------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~-----~~~~  159 (243)
                      +|.+.+.||+|+||.||+|+...+..               ....+.+|+.+|++++|+||+++++++...     ..+|
T Consensus         1 ry~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~   80 (338)
T cd07859           1 RYKIQEVIGKGSYGVVCSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFKDIY   80 (338)
T ss_pred             CeEEEEEEeecCCeEEEEEEECCCCCEEEEEEechhhccchhHHHHHHHHHHHHhCCCCCEeeecceEeccCCCCCceEE
Confidence            47888999999999999998654321               234578999999999999999999988643     2589


Q ss_pred             EEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          160 LVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       160 lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      +|||||. ++|.+++....  .+++..+..++.|++.||.|||.        +++|||++.++.+||+|||+++...
T Consensus        81 lv~e~~~-~~L~~~l~~~~--~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIll~~~~~~kL~Dfg~~~~~~  154 (338)
T cd07859          81 VVFELME-SDLHQVIKAND--DLTPEHHQFFLYQLLRALKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVAF  154 (338)
T ss_pred             EEEecCC-CCHHHHHHhcc--cCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCcEEEccCccccccc
Confidence            9999995 68998886544  48999999999999999999987        5689999999999999999998653

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=99.88  E-value=7.4e-22  Score=162.48  Aligned_cols=131  Identities=23%  Similarity=0.324  Sum_probs=115.3

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccC
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVL  166 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~  166 (243)
                      .+|.+.+.||+|+||.||+|.+....            .....+.+|+++|++++|+||+++++++...+.+++||||+.
T Consensus         6 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~   85 (263)
T cd05052           6 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMT   85 (263)
T ss_pred             HHeEEeeecCCcccceEEEEEEecCCceEEEEEecCCchHHHHHHHHHHHHHhCCCCChhheEEEEcCCCCcEEEEEeCC
Confidence            45788899999999999999865432            235678899999999999999999999999999999999999


Q ss_pred             CCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          167 NNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       167 ~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      +++|.+++.......+++..++.++.|++.+|.|||.        +++|||+++++.+||+|||+++....
T Consensus        86 ~~~L~~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~dlkp~nil~~~~~~~kl~df~~~~~~~~  156 (263)
T cd05052          86 YGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTG  156 (263)
T ss_pred             CCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhCCEeecccCcceEEEcCCCcEEeCCCcccccccc
Confidence            9999999876554468999999999999999999987        56999999999999999999987654

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=99.88  E-value=1.3e-21  Score=163.08  Aligned_cols=128  Identities=27%  Similarity=0.349  Sum_probs=111.1

Q ss_pred             CCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEec
Q 039406          101 FSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEF  164 (243)
Q Consensus       101 ~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  164 (243)
                      |...+.||+|+||.||++.+..+.+                ....+.+|+.+|++++|+||+.+++++..++..|+||||
T Consensus         2 ~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~   81 (285)
T cd05632           2 FRQYRVLGKGGFGEVCACQVRATGKMYACKRLEKKRIKKRKGESMALNEKQILEKVNSQFVVNLAYAYETKDALCLVLTI   81 (285)
T ss_pred             ceEEEEEecCCCeEEEEEEECCCCcEEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCcCceeEEEEEecCCEEEEEEEe
Confidence            6677899999999999998754321                123467899999999999999999999999999999999


Q ss_pred             cCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          165 VLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       165 ~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      +.+++|.+++...+...+++..++.++.|++.||.|||.        +++|||++.++.+||+|||++....
T Consensus        82 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~~iiH~dikp~Nili~~~~~~kl~Dfg~~~~~~  153 (285)
T cd05632          82 MNGGDLKFHIYNMGNPGFEEERALFYAAEILCGLEDLHRENTVYRDLKPENILLDDYGHIRISDLGLAVKIP  153 (285)
T ss_pred             ccCccHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeecCCCHHHEEECCCCCEEEecCCcceecC
Confidence            999999988875554468999999999999999999986        4589999999999999999997754

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>PHA03209 serine/threonine kinase US3; Provisional

Probab=99.88  E-value=1.6e-21  Score=167.77  Aligned_cols=130  Identities=18%  Similarity=0.264  Sum_probs=111.2

Q ss_pred             HhCCCCccceeeecCceEEEEEEecCCch-------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccCCCC
Q 039406           97 ATDGFSDANLLRQDGFGYVHRGVLPNGKE-------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNT  169 (243)
Q Consensus        97 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~-------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~g~  169 (243)
                      ...+|.+.+.||+|+||.||+|+......       .......|+.+|++++|+||+++++++...+..++||||+. ++
T Consensus        64 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~valK~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~-~~  142 (357)
T PHA03209         64 ASLGYTVIKTLTPGSEGRVFVATKPGQPDPVVLKIGQKGTTLIEAMLLQNVNHPSVIRMKDTLVSGAITCMVLPHYS-SD  142 (357)
T ss_pred             hhcCcEEEEEecCCCCeEEEEEEECCCCceEEEEeCCccccHHHHHHHHhCCCCCCcChhheEEeCCeeEEEEEccC-Cc
Confidence            34679999999999999999998765532       22345679999999999999999999999999999999995 58


Q ss_pred             HHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          170 LVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       170 L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      |.+++..... .+++..++.++.||+.||.|||.        |++|||++.++.+||+|||+++...
T Consensus       143 l~~~l~~~~~-~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~  208 (357)
T PHA03209        143 LYTYLTKRSR-PLPIDQALIIEKQILEGLRYLHAQRIIHRDVKTENIFINDVDQVCIGDLGAAQFPV  208 (357)
T ss_pred             HHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEEecCccccccc
Confidence            8888765433 58999999999999999999976        4689999999999999999998643

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=99.88  E-value=1.4e-21  Score=162.36  Aligned_cols=123  Identities=26%  Similarity=0.374  Sum_probs=106.2

Q ss_pred             eeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccCCCCH
Q 039406          107 LRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTL  170 (243)
Q Consensus       107 lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~g~L  170 (243)
                      ||+|+||.||+++.+.+.+                ....+..|+++|++++|+||+++++++..+..+|+||||+.+++|
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~il~~l~hp~i~~~~~~~~~~~~~~lv~e~~~g~~L   80 (277)
T cd05607           1 LGKGGFGEVCAVQVKNTGKMYACKKLDKKRLKKKSGEKMALLEKEILEKVNSPFIVNLAYAFESKTHLCLVMSLMNGGDL   80 (277)
T ss_pred             CCCCCceEEEEEEEccCCcEEEEEEEcHHHhhcchhhHHHHHHHHHHHhcCCCcEEEEEEEEecCCeEEEEEecCCCCCH
Confidence            7999999999998665321                123456699999999999999999999999999999999999999


Q ss_pred             HHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          171 VFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       171 ~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      .+++.......+++..++.++.|++.||.|||.        +++|||++.++.+||+|||++..+..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dikp~Nili~~~~~~~l~Dfg~~~~~~~  147 (277)
T cd05607          81 KYHIYNVGERGLEMERVIHYSAQITCGILHLHSMDIVYRDMKPENVLLDDQGNCRLSDLGLAVELKD  147 (277)
T ss_pred             HHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHCCEEEccCChHhEEEcCCCCEEEeeceeeeecCC
Confidence            988866554468899999999999999999986        56899999999999999999987654

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=99.88  E-value=1.3e-21  Score=159.96  Aligned_cols=131  Identities=22%  Similarity=0.275  Sum_probs=114.8

Q ss_pred             CCCccceeeecCceEEEEEEecCCc---------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEec
Q 039406          100 GFSDANLLRQDGFGYVHRGVLPNGK---------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEF  164 (243)
Q Consensus       100 ~~~~~~~lg~G~~g~V~~~~~~~~~---------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  164 (243)
                      +|...+.||+|+||.||++....+.               ...+.+.+|++++++++|+||+++++++...+..|+||||
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   80 (256)
T cd08529           1 DFEILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSYIIRYYESFLDKGKLNIVMEY   80 (256)
T ss_pred             CceEeEEecCCCCeEEEEEEEcCCCcEEEEEEeehhhCCHHHHHHHHHHHHHHHhcCCCCeehheeeeccCCEEEEEEEe
Confidence            4778899999999999999765432               2456788999999999999999999999999999999999


Q ss_pred             cCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          165 VLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       165 ~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      +.+++|.+++.......+++..+..++.+++.+|.|||.        +++||+++.++.+||+|||+++.+...
T Consensus        81 ~~~~~L~~~l~~~~~~~~~~~~~~~i~~~l~~al~~lH~~~i~h~dl~~~nili~~~~~~~l~df~~~~~~~~~  154 (256)
T cd08529          81 AENGDLHKLLKMQRGRPLPEDQVWRFFIQILLGLAHLHSKKILHRDIKSLNLFLDAYDNVKIGDLGVAKLLSDN  154 (256)
T ss_pred             CCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCcceEEEeCCCCEEEcccccceeccCc
Confidence            999999999976544468899999999999999999987        468999999999999999999977543

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=99.88  E-value=1.3e-21  Score=161.17  Aligned_cols=129  Identities=25%  Similarity=0.389  Sum_probs=114.0

Q ss_pred             CCCCccceeeecCceEEEEEEecCC-----------------chhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNG-----------------KEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLV  161 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~-----------------~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv  161 (243)
                      ++|...+.||+|+||.||+|.++..                 ......+.+|+.+|++++|+||+++++++...+..++|
T Consensus         4 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~iv   83 (266)
T cd05033           4 SYVTIEKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASIMGQFDHPNIIRLEGVVTKSRPVMII   83 (266)
T ss_pred             HHceeeeEecCCccceEEEEEEccCCCCcceEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCcceEeEEEecCCceEEE
Confidence            5788999999999999999976432                 11345688899999999999999999999999999999


Q ss_pred             EeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          162 YEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       162 ~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      |||+.+++|.+++..... .+++..++.++.+++.||.|||.        +++|||++.++.+||+|||+++.+.
T Consensus        84 ~e~~~~~~L~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~Lh~~~i~H~di~p~nili~~~~~~~l~dfg~~~~~~  157 (266)
T cd05033          84 TEYMENGSLDKFLRENDG-KFTVGQLVGMLRGIASGMKYLSEMNYVHRDLAARNILVNSNLVCKVSDFGLSRRLE  157 (266)
T ss_pred             EEcCCCCCHHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCcceEEEcCCCCEEECccchhhccc
Confidence            999999999999876443 58999999999999999999987        5689999999999999999999875

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=99.88  E-value=9.7e-22  Score=166.25  Aligned_cols=130  Identities=22%  Similarity=0.355  Sum_probs=111.3

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc------------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK------------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRML  160 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~------------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~l  160 (243)
                      .+|...+.||+|+||.||+|++..+.                  ...+.+.+|+.+++.++|+||+++++++... ..++
T Consensus         7 ~~f~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~g~~~~~-~~~~   85 (316)
T cd05108           7 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS-TVQL   85 (316)
T ss_pred             hhceeeeeeecCCCceEEEEEEecCCCccceeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEcCC-Ccee
Confidence            56999999999999999999753221                  2346788899999999999999999998764 5789


Q ss_pred             EEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          161 VYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       161 v~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      |+||+.+|+|.+++..... .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++.+...
T Consensus        86 v~e~~~~g~l~~~l~~~~~-~~~~~~~~~~~~qi~~~L~~LH~~~iiH~dlkp~Nill~~~~~~kl~DfG~a~~~~~~  162 (316)
T cd05108          86 ITQLMPFGCLLDYVREHKD-NIGSQYLLNWCVQIAKGMNYLEERRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAD  162 (316)
T ss_pred             eeecCCCCCHHHHHHhccc-cCCHHHHHHHHHHHHHHHHHHHhcCeeccccchhheEecCCCcEEEccccccccccCC
Confidence            9999999999999876543 48888999999999999999987        568999999999999999999987543

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=99.88  E-value=1.1e-21  Score=165.41  Aligned_cols=129  Identities=23%  Similarity=0.323  Sum_probs=110.8

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch--------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEec
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE--------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEF  164 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~--------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  164 (243)
                      ++|.+.+.||+|+||.||+|+.+.+..              ....+.+|+.++++++|+||+++++++..++..|+||||
T Consensus         6 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   85 (309)
T cd07872           6 ETYIKLEKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIVHTDKSLTLVFEY   85 (309)
T ss_pred             CceEEEEEecccCCEEEEEEEecCCCCeEEEEEeeccccCCcchhHHHHHHHHHhCCCCCcceEEEEEeeCCeEEEEEeC
Confidence            679999999999999999997654321              234577899999999999999999999999999999999


Q ss_pred             cCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          165 VLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       165 ~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      +.+ +|.+++...+. .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++....
T Consensus        86 ~~~-~l~~~~~~~~~-~~~~~~~~~~~~qi~~aL~~lH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~  156 (309)
T cd07872          86 LDK-DLKQYMDDCGN-IMSMHNVKIFLYQILRGLAYCHRRKVLHRDLKPQNLLINERGELKLADFGLARAKSV  156 (309)
T ss_pred             CCC-CHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEECccccceecCC
Confidence            975 88887765443 47888999999999999999987        46899999999999999999987543

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=99.87  E-value=1.4e-21  Score=163.01  Aligned_cols=130  Identities=27%  Similarity=0.350  Sum_probs=112.0

Q ss_pred             CCCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEe
Q 039406          100 GFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYE  163 (243)
Q Consensus       100 ~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e  163 (243)
                      .|+..+.||+|+||.||++....+.+                ....+.+|+.+|++++|+||+.+++.+.+.+.+|+|||
T Consensus         1 ~f~~~~~ig~G~~g~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e   80 (285)
T cd05630           1 TFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLT   80 (285)
T ss_pred             CceeeEEeecCCCeEEEEEEEcCCCceEEEEEEehhhccchHHHHHHHHHHHHHHhCCCCCeeeeeEEEecCCEEEEEEE
Confidence            36778899999999999997664421                23456789999999999999999999999999999999


Q ss_pred             ccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          164 FVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       164 ~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      |+.+++|.+++...+...+++..++.++.|++.||.|||.        +++|||++.++.++|+|||++.....
T Consensus        81 ~~~g~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~iiH~dikp~Nil~~~~~~~~l~Dfg~~~~~~~  154 (285)
T cd05630          81 LMNGGDLKFHIYHMGEAGFEEGRAVFYAAEICCGLEDLHQERIVYRDLKPENILLDDHGHIRISDLGLAVHVPE  154 (285)
T ss_pred             ecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCEEeCCCCHHHEEECCCCCEEEeeccceeecCC
Confidence            9999999998865544458999999999999999999987        45899999999999999999987643

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=99.87  E-value=7.7e-22  Score=165.97  Aligned_cols=128  Identities=24%  Similarity=0.460  Sum_probs=111.0

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc----------------hhHHHHHHHHHHHHhc-CCCccceEEEEEEeCCeeEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK----------------EGEREFQAEVEIISRV-HHKHLVSLVGYYTAGSQRMLV  161 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~----------------~~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~~~lv  161 (243)
                      ++|.+.+.||+|+||.||+|.++.+.                .....+.+|+++|.++ +|+||+++++++..++..|+|
T Consensus         7 ~~~~~~~~lg~G~~g~V~~a~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~Ei~~l~~l~~h~~iv~~~~~~~~~~~~~lv   86 (303)
T cd05088           7 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLA   86 (303)
T ss_pred             hhceeeeeecCCCCceEEEEEEccCCceeeEEEEEecccCCHHHHHHHHHHHHHHHHhcCCCCcceEEEEECCCCCceEE
Confidence            67888999999999999999764321                1234678899999999 899999999999999999999


Q ss_pred             EeccCCCCHHHHhccCC--------------CCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEe
Q 039406          162 YEFVLNNTLVFHLHGKG--------------QPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVA  219 (243)
Q Consensus       162 ~e~~~~g~L~~~l~~~~--------------~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~  219 (243)
                      |||+++++|.+++....              ...+++..++.++.|++.||.|||.        +++|||++.++.+||+
T Consensus        87 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~gi~H~dlkp~Nili~~~~~~kl~  166 (303)
T cd05088          87 IEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIA  166 (303)
T ss_pred             EEeCCCCcHHHHHHhcccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHhCCccccccchheEEecCCCcEEeC
Confidence            99999999999986432              1247889999999999999999987        5699999999999999


Q ss_pred             ccCCcee
Q 039406          220 DFGLAKI  226 (243)
Q Consensus       220 DFG~a~~  226 (243)
                      |||+++.
T Consensus       167 dfg~~~~  173 (303)
T cd05088         167 DFGLSRG  173 (303)
T ss_pred             ccccCcc
Confidence            9999864

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=99.87  E-value=1.3e-21  Score=160.86  Aligned_cols=132  Identities=28%  Similarity=0.416  Sum_probs=115.9

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCc-----------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccC
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGK-----------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVL  166 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~-----------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~  166 (243)
                      .++|.+.+.||+|+||.||+|.+..+.           ...+.+.+|+.+|++++|+||+++++++...+..|+||||+.
T Consensus         5 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~v~iK~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~   84 (261)
T cd05068           5 RTSIQLLRKLGAGQFGEVWEGLWNNTTPVAVKTLKPGTMDPKDFLAEAQIMKKLRHPKLIQLYAVCTLEEPIYIVTELMK   84 (261)
T ss_pred             hhheeeEEEecccCCccEEEEEecCCeEEEEEeeCCCcccHHHHHHHHHHHHHCCCCCccceeEEEecCCCeeeeeeccc
Confidence            367889999999999999999764432           134678899999999999999999999999999999999999


Q ss_pred             CCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          167 NNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       167 ~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      +++|.+++.......+++..+..++.+++.||.|||.        +++|||++.++.+||+|||+++.+..
T Consensus        85 ~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~  155 (261)
T cd05068          85 YGSLLEYLQGGAGRALKLPQLIDMAAQVASGMAYLEAQNYIHRDLAARNVLVGENNICKVADFGLARVIKE  155 (261)
T ss_pred             CCcHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCCcceEEEcCCCCEEECCcceEEEccC
Confidence            9999999976554458999999999999999999987        46899999999999999999987753

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>PHA03207 serine/threonine kinase US3; Provisional

Probab=99.87  E-value=3.1e-21  Score=168.06  Aligned_cols=130  Identities=22%  Similarity=0.256  Sum_probs=110.5

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCch----------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccCC
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGKE----------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLN  167 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~----------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~  167 (243)
                      ..+|.+.+.||+|+||.||+|.......          ..+.+.+|+++|++++|+||+++++++...+.+|+|||++. 
T Consensus        91 ~~~y~i~~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~e~~~-  169 (392)
T PHA03207         91 RMQYNILSSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTGGKTPGREIDILKTISHRAIINLIHAYRWKSTVCMVMPKYK-  169 (392)
T ss_pred             cCceEEEEeecCCCCeEEEEEEEcCCccceeEEEEeccccccHHHHHHHHHhcCCCCccceeeeEeeCCEEEEEehhcC-
Confidence            4679999999999999999997543211          12345789999999999999999999999999999999995 


Q ss_pred             CCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          168 NTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       168 g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      ++|.+++....  .+++..++.++.|++.||.|||.        |++|||++.++.+||+|||+++.+...
T Consensus       170 ~~l~~~l~~~~--~l~~~~~~~i~~ql~~aL~~LH~~givHrDlkp~Nill~~~~~~~l~DfG~a~~~~~~  238 (392)
T PHA03207        170 CDLFTYVDRSG--PLPLEQAITIQRRLLEALAYLHGRGIIHRDVKTENIFLDEPENAVLGDFGAACKLDAH  238 (392)
T ss_pred             CCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEcCCCCEEEccCccccccCcc
Confidence            58888884333  58999999999999999999976        468999999999999999999876543

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=99.87  E-value=9.5e-22  Score=158.60  Aligned_cols=135  Identities=23%  Similarity=0.291  Sum_probs=113.9

Q ss_pred             HhCCCCc-cceeeecCceEEEEEEecCCch--------hHHHHHHHHHHHHhc-CCCccceEEEEEEe----CCeeEEEE
Q 039406           97 ATDGFSD-ANLLRQDGFGYVHRGVLPNGKE--------GEREFQAEVEIISRV-HHKHLVSLVGYYTA----GSQRMLVY  162 (243)
Q Consensus        97 ~~~~~~~-~~~lg~G~~g~V~~~~~~~~~~--------~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~----~~~~~lv~  162 (243)
                      ++++|.+ .++||-|-.|.|..|..+.+++        ...+..+|+++.-.. .|+|||.++++|+.    ...+.|||
T Consensus        59 itedY~is~qvLG~GinGkV~~C~~k~T~ekfALKvL~Ds~KARrEVeLHw~~s~h~~iV~IidVyeNs~~~rkcLLiVm  138 (400)
T KOG0604|consen   59 ITEDYSISWQVLGAGINGKVVQCVHKRTQEKFALKVLLDSPKARREVELHWMASGHPHIVSIIDVYENSYQGRKCLLIVM  138 (400)
T ss_pred             chhhheehhhhhccccCCceEEEEeccchhhhHHHHHhcCHHHHhHhhhhhhhcCCCceEEeehhhhhhccCceeeEeee
Confidence            4567754 4689999999999999888765        234567899887666 69999999999864    34688999


Q ss_pred             eccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECC---CCcEEEeccCCceecCCCC
Q 039406          163 EFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDF---KFEAKVADFGLAKIASDVN  231 (243)
Q Consensus       163 e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~---~~~~kl~DFG~a~~~~~~~  231 (243)
                      |+|+||+|+..|..++...+++.++..|+.||+.|+.|||+        ||+|+|...   +..+||+|||||+.-....
T Consensus       139 E~meGGeLfsriq~~g~~afTErea~eI~~qI~~Av~~lH~~nIAHRDlKpENLLyt~t~~na~lKLtDfGFAK~t~~~~  218 (400)
T KOG0604|consen  139 ECMEGGELFSRIQDRGDQAFTEREASEIMKQIGLAVRYLHSMNIAHRDLKPENLLYTTTSPNAPLKLTDFGFAKETQEPG  218 (400)
T ss_pred             ecccchHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhcchhhccCChhheeeecCCCCcceEecccccccccCCCc
Confidence            99999999999999998889999999999999999999976        679999964   4579999999999876543

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=99.87  E-value=1.2e-21  Score=160.55  Aligned_cols=130  Identities=25%  Similarity=0.346  Sum_probs=113.0

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc-----------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccCC
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK-----------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLN  167 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~-----------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~  167 (243)
                      .+|.+.+.||+|+||.||++.++...           .....+.+|++++++++|+||+++++++...+..|+||||+++
T Consensus         4 ~~~~~~~~lg~G~~~~v~~~~~~~~~~~~iK~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~   83 (256)
T cd05059           4 SELTFLKELGSGQFGVVHLGKWRGKIDVAIKMIREGAMSEDDFIEEAKVMMKLSHPNLVQLYGVCTKQRPIFIVTEYMAN   83 (256)
T ss_pred             HHcchhhhhccCCCceEEEeEecCCccEEEEEeccCCCCHHHHHHHHHHHHhCCCCCEEEEEEEEcCCCceEEEEecCCC
Confidence            45788899999999999999765432           1345688899999999999999999999999999999999999


Q ss_pred             CCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          168 NTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       168 g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      ++|.+++..... .+++..++.++.|++.+|.|||.        +++|||++.++.+||+|||+++...+
T Consensus        84 ~~L~~~l~~~~~-~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dl~p~ni~i~~~~~~kl~dfg~~~~~~~  152 (256)
T cd05059          84 GCLLNYLRERKG-KLGTEWLLDMCSDVCEAMEYLESNGFIHRDLAARNCLVGEDNVVKVSDFGLARYVLD  152 (256)
T ss_pred             CCHHHHHHhccc-CCCHHHHHHHHHHHHHHHHHHHHCCcccccccHhhEEECCCCcEEECCcccceeccc
Confidence            999999875443 58999999999999999999987        46899999999999999999987643

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=99.87  E-value=4.1e-22  Score=163.55  Aligned_cols=132  Identities=30%  Similarity=0.482  Sum_probs=116.2

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCc------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEecc
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGK------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFV  165 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~  165 (243)
                      ..+|...+.||.|+||.||+|....+.            .....+.+|+.+|+.++|+||+++++++...+..++||||+
T Consensus         5 ~~~y~~~~~ig~g~~~~vy~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~   84 (261)
T cd05148           5 REEFTLERKLGSGYFGEVWEGLWKNRVRVAIKILKSDDLLKQQDFQKEVQALKRLRHKHLISLFAVCSVGEPVYIITELM   84 (261)
T ss_pred             HHHHHHhhhhccCCCccEEEeEecCCCcEEEEeccccchhhHHHHHHHHHHHhcCCCcchhheeeeEecCCCeEEEEeec
Confidence            457888999999999999999876532            13567889999999999999999999999999999999999


Q ss_pred             CCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          166 LNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       166 ~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      ++++|.+++.......+++..++.++.+++.||.|||.        +++|||++.++.+||+|||++....+
T Consensus        85 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~h~dl~~~nilv~~~~~~kl~d~g~~~~~~~  156 (261)
T cd05148          85 EKGSLLAFLRSPEGQVLPVASLIDMACQVAEGMAYLEEQNSIHRDLAARNILVGEDLVCKVADFGLARLIKE  156 (261)
T ss_pred             ccCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccccCcceEEEcCCceEEEccccchhhcCC
Confidence            99999999976555568999999999999999999987        46899999999999999999987643

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=99.87  E-value=1.9e-21  Score=159.09  Aligned_cols=132  Identities=17%  Similarity=0.244  Sum_probs=114.6

Q ss_pred             CCCccceeeecCceEEEEEEecCCc---------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEec
Q 039406          100 GFSDANLLRQDGFGYVHRGVLPNGK---------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEF  164 (243)
Q Consensus       100 ~~~~~~~lg~G~~g~V~~~~~~~~~---------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  164 (243)
                      +|+..+.||.|+||.||.++...+.               ...+.+.+|+.+|++++|+||+++++++.+.+..+++|||
T Consensus         1 ~y~~~~~ig~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~~~e~   80 (256)
T cd08221           1 HYIPIRVLGKGAFGEATLYRRTEDDSLVVWKEVNLTRLSEKERRDALNEIVILSLLQHPNIIAYYNHFMDDNTLLIEMEY   80 (256)
T ss_pred             CceEeeEecccCCceEEEEEEcCCCcEEEEEEEeecccchhHHHHHHHHHHHHHhCCCCCeeEEEeEEecCCeEEEEEEe
Confidence            4788999999999999888754432               2346688999999999999999999999999999999999


Q ss_pred             cCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCC
Q 039406          165 VLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVN  231 (243)
Q Consensus       165 ~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~  231 (243)
                      |.+++|.+++.......+++..+..++.+++.+|.|||+        +++||+++.++.+||+|||+++......
T Consensus        81 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~dl~p~ni~~~~~~~~kl~d~~~~~~~~~~~  155 (256)
T cd08221          81 ANGGTLYDKIVRQKGQLFEEEMVLWYLFQIVSAVSYIHKAGILHRDIKTLNIFLTKAGLIKLGDFGISKILGSEY  155 (256)
T ss_pred             cCCCcHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhCCccccCCChHhEEEeCCCCEEECcCcceEEccccc
Confidence            999999999976544468999999999999999999986        4589999999999999999998775433

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=99.87  E-value=1.8e-22  Score=174.70  Aligned_cols=138  Identities=25%  Similarity=0.384  Sum_probs=118.0

Q ss_pred             CCccceeeecCceEEEEEEecCCchhHHHH----HHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccCCCCHHHHhcc
Q 039406          101 FSDANLLRQDGFGYVHRGVLPNGKEGEREF----QAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHG  176 (243)
Q Consensus       101 ~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~----~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~  176 (243)
                      ...++-||.|+.|.||+|++++....++.+    .-+|+.|++|+|+||+.+.|+|.....+|||||||..|-|...|+.
T Consensus       126 IsELeWlGSGaQGAVF~Grl~netVAVKKV~elkETdIKHLRkLkH~NII~FkGVCtqsPcyCIiMEfCa~GqL~~VLka  205 (904)
T KOG4721|consen  126 ISELEWLGSGAQGAVFLGRLHNETVAVKKVRELKETDIKHLRKLKHPNIITFKGVCTQSPCYCIIMEFCAQGQLYEVLKA  205 (904)
T ss_pred             hhhhhhhccCcccceeeeeccCceehhHHHhhhhhhhHHHHHhccCcceeeEeeeecCCceeEEeeeccccccHHHHHhc
Confidence            345678999999999999999887655443    3478899999999999999999999999999999999999999976


Q ss_pred             CCCCCCCHHHHHHHHHHHHHhhhHhhc------CC--CcEEECCCCcEEEeccCCceecCCCCceeeecccccc
Q 039406          177 KGQPTMDWPTRIKIALGSAKGLAYLHD------DL--ANILLDFKFEAKVADFGLAKIASDVNTHVSTRVMGTF  242 (243)
Q Consensus       177 ~~~~~l~~~~~~~i~~~i~~~l~~lH~------~~--~NiLl~~~~~~kl~DFG~a~~~~~~~~~~~~~~~GT~  242 (243)
                      ..  .+.......+..+|+.|+.|||.      |+  -||||..+..|||+|||.++.+.+..+ . -.++||.
T Consensus       206 ~~--~itp~llv~Wsk~IA~GM~YLH~hKIIHRDLKSPNiLIs~~d~VKIsDFGTS~e~~~~ST-k-MSFaGTV  275 (904)
T KOG4721|consen  206 GR--PITPSLLVDWSKGIAGGMNYLHLHKIIHRDLKSPNILISYDDVVKISDFGTSKELSDKST-K-MSFAGTV  275 (904)
T ss_pred             cC--ccCHHHHHHHHHHhhhhhHHHHHhhHhhhccCCCceEeeccceEEeccccchHhhhhhhh-h-hhhhhhH
Confidence            54  47888889999999999999965      44  599999999999999999999887643 2 2478885

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=99.87  E-value=1.5e-22  Score=164.06  Aligned_cols=134  Identities=19%  Similarity=0.287  Sum_probs=111.6

Q ss_pred             HHhCCCCccceeeecCceEEEEEEecCCch-------------------hHHHHHHHHHHHHhcCCCccceEEEEEEe-C
Q 039406           96 RATDGFSDANLLRQDGFGYVHRGVLPNGKE-------------------GEREFQAEVEIISRVHHKHLVSLVGYYTA-G  155 (243)
Q Consensus        96 ~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~-------------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~  155 (243)
                      .....|+....||+|+||.||+|+-+++..                   ......+|+.+++.|+|+||+.+..+|.. +
T Consensus        21 e~l~~ye~ig~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~kd~tGiS~SAcREiaL~REl~h~nvi~Lv~Vfl~~d  100 (438)
T KOG0666|consen   21 EDLFEYEGIGKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGEKDGTGISMSACREIALLRELKHPNVISLVKVFLSHD  100 (438)
T ss_pred             HHHHHhhccceecccccceeeEeeeccCCcccchhhHHHHHhccCCCCCcCHHHHHHHHHHHHhcCCcchhHHHHHhccC
Confidence            344779999999999999999996554432                   12345789999999999999999999887 7


Q ss_pred             CeeEEEEeccCCCCHHHHhccCC---CCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCC----CcEEEec
Q 039406          156 SQRMLVYEFVLNNTLVFHLHGKG---QPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFK----FEAKVAD  220 (243)
Q Consensus       156 ~~~~lv~e~~~~g~L~~~l~~~~---~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~----~~~kl~D  220 (243)
                      ..+||++||++. +|.++|+-..   ...++...++.|+.||+.|+.|||.        ||+|||+..+    |.|||+|
T Consensus       101 ~~v~l~fdYAEh-DL~~II~fHr~~~~~~lp~~mvKsilwQil~Gv~YLH~NWvlHRDLKPaNIlvmgdgperG~VKIaD  179 (438)
T KOG0666|consen  101 KKVWLLFDYAEH-DLWHIIKFHRASKAKQLPRSMVKSILWQILDGVHYLHSNWVLHRDLKPANILVMGDGPERGRVKIAD  179 (438)
T ss_pred             ceEEEEehhhhh-hHHHHHHHhccchhccCCHHHHHHHHHHHHhhhHHHhhhheeeccCCcceEEEeccCCccCeeEeec
Confidence            789999999988 8888886422   2357888899999999999999976        6799999766    9999999


Q ss_pred             cCCceecCCC
Q 039406          221 FGLAKIASDV  230 (243)
Q Consensus       221 FG~a~~~~~~  230 (243)
                      ||+||.+.+.
T Consensus       180 lGlaR~~~~p  189 (438)
T KOG0666|consen  180 LGLARLFNNP  189 (438)
T ss_pred             ccHHHHhhcc
Confidence            9999987643

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=99.87  E-value=2e-21  Score=180.95  Aligned_cols=129  Identities=19%  Similarity=0.220  Sum_probs=111.4

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc----------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK----------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVY  162 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~----------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  162 (243)
                      ++|.+.++||+|+||.||+|+...+.                ...+++.+|++++++++||||+++++++.+++..|+||
T Consensus         2 grYeIi~~LGkGgfG~VYlA~d~~tg~~VAIK~I~~~l~~~e~~~~rflrEi~ILs~L~HPNIVkl~~v~~d~~~lyLVM   81 (932)
T PRK13184          2 QRYDIIRLIGKGGMGEVYLAYDPVCSRRVALKKIREDLSENPLLKKRFLREAKIAADLIHPGIVPVYSICSDGDPVYYTM   81 (932)
T ss_pred             CCeEEEEEEecCCCEEEEEEEECCCCcEEEEEEECcccccCHHHHHHHHHHHHHHHhCCCcCcCeEEEEEeeCCEEEEEE
Confidence            57999999999999999999765432                13467899999999999999999999999999999999


Q ss_pred             eccCCCCHHHHhccCC---------CCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCce
Q 039406          163 EFVLNNTLVFHLHGKG---------QPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAK  225 (243)
Q Consensus       163 e~~~~g~L~~~l~~~~---------~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~  225 (243)
                      ||++|++|.+++....         ...+++..++.++.|++.||.|||.        ||+|||++.++.+||+|||+++
T Consensus        82 EY~eGGSL~~lL~s~~~~~~l~e~~~~~lsv~~iL~I~~QIa~AL~yLHs~GIIHRDLKPeNILLd~dg~vKLiDFGLAk  161 (932)
T PRK13184         82 PYIEGYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFHKICATIEYVHSKGVLHRDLKPDNILLGLFGEVVILDWGAAI  161 (932)
T ss_pred             EcCCCCCHHHHHHHhhhccccchhhhcccCHHHHHHHHHHHHHHHHHHHHCCccccCCchheEEEcCCCCEEEEecCcce
Confidence            9999999999886321         1235567788999999999999987        5799999999999999999998


Q ss_pred             ec
Q 039406          226 IA  227 (243)
Q Consensus       226 ~~  227 (243)
                      ..
T Consensus       162 ~i  163 (932)
T PRK13184        162 FK  163 (932)
T ss_pred             ec
Confidence            76

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=99.87  E-value=1.1e-21  Score=161.33  Aligned_cols=126  Identities=31%  Similarity=0.488  Sum_probs=108.5

Q ss_pred             ccceeeecCceEEEEEEecC-C-----------------chhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEec
Q 039406          103 DANLLRQDGFGYVHRGVLPN-G-----------------KEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEF  164 (243)
Q Consensus       103 ~~~~lg~G~~g~V~~~~~~~-~-----------------~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  164 (243)
                      ..+.||.|.||.||+|.+.. .                 .+..+.+.+|++.|++++|+||+++++++...+..++||||
T Consensus         3 ~~~~ig~G~fg~v~~~~~~~~~~~~~~~V~vk~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~g~~~~~~~~~lv~e~   82 (259)
T PF07714_consen    3 LIKQIGEGSFGKVYRAEWKQKDNDKNQPVAVKILKPSSSEEEEEEFLNEIQILRKLRHPNIVKLYGFCIENEPLFLVMEY   82 (259)
T ss_dssp             EEEEEEEESSEEEEEEEEESTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTHSBTTBE-EEEEEESSSSEEEEEE-
T ss_pred             EeeEEccCCCcEEEEEEEEcccCCCCEEEEEEEeccccccccceeeeecccccccccccccccccccccccccccccccc
Confidence            45789999999999998871 1                 11367899999999999999999999999988889999999


Q ss_pred             cCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhcC--------CCcEEECCCCcEEEeccCCceecC
Q 039406          165 VLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHDD--------LANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       165 ~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~--------~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      |.+|+|.+++.......+++..+..++.|++.||.|||.+        +.|||++.++.+||+|||+++...
T Consensus        83 ~~~g~L~~~L~~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~~iiH~~l~~~nill~~~~~~Kl~~f~~~~~~~  154 (259)
T PF07714_consen   83 CPGGSLDDYLKSKNKEPLSEQQRLSIAIQIAEALSYLHSNNIIHGNLSPSNILLDSNGQVKLSDFGLSRPIS  154 (259)
T ss_dssp             -TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEEESTTTGEETT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999999887444699999999999999999999872        479999999999999999999873

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=99.87  E-value=4.2e-21  Score=157.09  Aligned_cols=130  Identities=16%  Similarity=0.262  Sum_probs=113.5

Q ss_pred             CCCccceeeecCceEEEEEEecCCc--------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEecc
Q 039406          100 GFSDANLLRQDGFGYVHRGVLPNGK--------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFV  165 (243)
Q Consensus       100 ~~~~~~~lg~G~~g~V~~~~~~~~~--------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~  165 (243)
                      +|.+.+.||+|+||.||++....+.              ...+.+.+|+.++++++|+||+++++.+.+++.+|+||||+
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   80 (255)
T cd08219           1 QYNVLRVVGEGSFGRALLVQHVNSDQKYAMKEIRLPKSSSAVEDSRKEAVLLAKMKHPNIVAFKESFEADGHLYIVMEYC   80 (255)
T ss_pred             CceEEEEeeccCCeEEEEEEEcCCCceEEEEEEEcCcchHHHHHHHHHHHHHHhCCCCCcceEEEEEEECCEEEEEEeeC
Confidence            4778899999999999999765432              23467788999999999999999999999999999999999


Q ss_pred             CCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          166 LNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       166 ~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      ++++|.+++.......+++..++.++.+++.||.|||.        +++|||++.++.++|+|||+++.+..
T Consensus        81 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~  152 (255)
T cd08219          81 DGGDLMQKIKLQRGKLFPEDTILQWFVQMCLGVQHIHEKRVLHRDIKSKNIFLTQNGKVKLGDFGSARLLTS  152 (255)
T ss_pred             CCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhhCCcccCCCCcceEEECCCCcEEEcccCcceeecc
Confidence            99999998865444458899999999999999999987        46899999999999999999987654

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=99.87  E-value=2.3e-21  Score=161.69  Aligned_cols=131  Identities=24%  Similarity=0.298  Sum_probs=106.7

Q ss_pred             CCCCccceeeecCceEEEEEEecCC-ch---------------hHHHHHHHHHHHHhc---CCCccceEEEEEE-----e
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNG-KE---------------GEREFQAEVEIISRV---HHKHLVSLVGYYT-----A  154 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~-~~---------------~~~~~~~E~~~l~~l---~hp~iv~~~~~~~-----~  154 (243)
                      ++|.+.+.||+|+||.||+|+.... ..               ....+.+|+.+++.+   +|+||+++++++.     .
T Consensus         1 ~~Y~~~~~lg~G~~g~Vy~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~hpniv~~~~~~~~~~~~~   80 (290)
T cd07862           1 QQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDR   80 (290)
T ss_pred             CCcceeeEeccCCCeEEEEEEEcCCCCeEEEEEEEecccCCCCchHHHHHHHHHHHhhcccCCCCcceEEEEEecccCCC
Confidence            3688899999999999999976422 11               223566788777765   6999999999885     3


Q ss_pred             CCeeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCcee
Q 039406          155 GSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKI  226 (243)
Q Consensus       155 ~~~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~  226 (243)
                      ...+++||||+. ++|.+++.......+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++.
T Consensus        81 ~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~iiH~dlkp~Nil~~~~~~~kl~Dfg~~~~  159 (290)
T cd07862          81 ETKLTLVFEHVD-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLARI  159 (290)
T ss_pred             CCcEEEEEccCC-CCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEEcCCCCEEEccccceEe
Confidence            456899999996 589988876554468999999999999999999986        56899999999999999999987


Q ss_pred             cCCC
Q 039406          227 ASDV  230 (243)
Q Consensus       227 ~~~~  230 (243)
                      ....
T Consensus       160 ~~~~  163 (290)
T cd07862         160 YSFQ  163 (290)
T ss_pred             ccCC
Confidence            6543

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.87  E-value=2.8e-21  Score=158.66  Aligned_cols=129  Identities=22%  Similarity=0.316  Sum_probs=112.2

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch------------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE------------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRML  160 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~------------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~l  160 (243)
                      ++|...+.||+|+||.||++....+..                  ..+.+.+|++++++++|+||+++++++.+++.+|+
T Consensus         2 ~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   81 (263)
T cd06625           2 TNWRRGKLLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIVQYYGCLRDDETLSI   81 (263)
T ss_pred             CcccccceecCCCceEEEEEEEcCCCcEEEEEEEeecccchhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEccCCeEEE
Confidence            578999999999999999997543211                  23567889999999999999999999999999999


Q ss_pred             EEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          161 VYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       161 v~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      ||||+.+++|.+++....  .+++..++.++.+++.||.|||.        +++|||++.++.+||+|||+++.+..
T Consensus        82 v~e~~~~~~l~~~~~~~~--~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dl~p~nilv~~~~~~~l~dfg~~~~~~~  156 (263)
T cd06625          82 FMEYMPGGSVKDQLKAYG--ALTETVTRKYTRQILEGVEYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKRLQT  156 (263)
T ss_pred             EEEECCCCcHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEeecccceeccc
Confidence            999999999999987544  48888999999999999999986        45899999999999999999987643

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=99.87  E-value=1.8e-21  Score=165.58  Aligned_cols=120  Identities=23%  Similarity=0.275  Sum_probs=101.0

Q ss_pred             eeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhc---CCCccceEEEEEEeCCeeEEEEeccCC
Q 039406          107 LRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRV---HHKHLVSLVGYYTAGSQRMLVYEFVLN  167 (243)
Q Consensus       107 lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l---~hp~iv~~~~~~~~~~~~~lv~e~~~~  167 (243)
                      ||+|+||.||+|+...+.+                ....+.+|..++..+   +|+||+++++++.+.+.+|+||||+.+
T Consensus         1 lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~p~i~~~~~~~~~~~~~~lv~e~~~~   80 (330)
T cd05586           1 IGKGTFGQVYQVRKKDTRRIYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLDESPFIVGLKFSFQTDSDLYLVTDYMSG   80 (330)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEEeHHHHhhhhHHHHHHHHHHHHHHhccCCCCcCcceEEEEecCCeEEEEEcCCCC
Confidence            7999999999998765422                122344566666655   699999999999999999999999999


Q ss_pred             CCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          168 NTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       168 g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      |+|.+++...+  .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++...
T Consensus        81 g~L~~~l~~~~--~~~~~~~~~~~~qil~al~~LH~~~ivHrDlkp~Nili~~~~~~kl~Dfg~a~~~~  147 (330)
T cd05586          81 GELFWHLQKEG--RFSEDRAKFYIAELVLALEHLHKYDIVYRDLKPENILLDATGHIALCDFGLSKANL  147 (330)
T ss_pred             ChHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeEECCCCCEEEecCCcCcCCC
Confidence            99999886544  48999999999999999999976        4689999999999999999998643

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=99.87  E-value=1.2e-21  Score=160.40  Aligned_cols=125  Identities=26%  Similarity=0.364  Sum_probs=109.5

Q ss_pred             CCccceeeecCceEEEEEEecCCch---------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEecc
Q 039406          101 FSDANLLRQDGFGYVHRGVLPNGKE---------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFV  165 (243)
Q Consensus       101 ~~~~~~lg~G~~g~V~~~~~~~~~~---------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~  165 (243)
                      |+..+.||+|+||.||+++...+.+               ......+|+.++++++|+||+++++++......++||||+
T Consensus         1 y~~~~~lg~G~~g~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~v~~~~   80 (260)
T PF00069_consen    1 YRLVKKLGSGGFGTVYKAKNKKNGQKVAVKIIDKSEIEEEEREENIREIKILRRLRHPNIVQILDVFQDDNYLYIVMEYC   80 (260)
T ss_dssp             EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTBTTBCHEEEEEEESSEEEEEEEEE
T ss_pred             CEEeEEEEeCCCEEEEEEEECCCCeEEEEEEeccccccccccchhhhhhhcccccccccccccccccccccccccccccc
Confidence            5677899999999999998777642               1223456999999999999999999999999999999999


Q ss_pred             CCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceec
Q 039406          166 LNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIA  227 (243)
Q Consensus       166 ~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~  227 (243)
                      .+++|.+++....  .+++..++.++.|++.+|.|||.        +++|||++.++.++|+|||++..+
T Consensus        81 ~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~L~~Lh~~~i~H~dikp~NIl~~~~~~~~l~Dfg~~~~~  148 (260)
T PF00069_consen   81 PGGSLQDYLQKNK--PLSEEEILKIAYQILEALAYLHSKGIVHRDIKPENILLDENGEVKLIDFGSSVKL  148 (260)
T ss_dssp             TTEBHHHHHHHHS--SBBHHHHHHHHHHHHHHHHHHHHTTEEESSBSGGGEEESTTSEEEESSGTTTEES
T ss_pred             ccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999997333  48999999999999999999987        568999999999999999999875

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=99.87  E-value=1.5e-21  Score=161.23  Aligned_cols=133  Identities=23%  Similarity=0.322  Sum_probs=112.8

Q ss_pred             HhCCCCccceeeecCceEEEEEEecCCch------------hHHHHHHHHHHHHhc-CCCccceEEEEEEeC------Ce
Q 039406           97 ATDGFSDANLLRQDGFGYVHRGVLPNGKE------------GEREFQAEVEIISRV-HHKHLVSLVGYYTAG------SQ  157 (243)
Q Consensus        97 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~------------~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~------~~  157 (243)
                      ..+.|...+.||+|+||.||+|......+            ....+.+|+.+++++ +|+||+++++++...      ..
T Consensus         4 ~~~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~~   83 (272)
T cd06637           4 PAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMDDQ   83 (272)
T ss_pred             hhhhhhHHHheeecCCeEEEEEEEcCCCcEEEEEEEEcCCccHHHHHHHHHHHHHhcCCCCeeeEeeEEeecCCCCCCcE
Confidence            34678888999999999999997654322            345788999999998 799999999998753      46


Q ss_pred             eEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          158 RMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       158 ~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      +|+||||+.+++|.+++.......+.+..++.++.|++.+|.|||.        +++||++++++.+||+|||+++....
T Consensus        84 ~~iv~e~~~~~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~LH~~~ivh~dl~~~nili~~~~~~~l~Dfg~~~~~~~  163 (272)
T cd06637          84 LWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDR  163 (272)
T ss_pred             EEEEEEcCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCCHHHEEECCCCCEEEccCCCceeccc
Confidence            8999999999999999876544468999999999999999999987        35899999999999999999987643

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=99.87  E-value=5.1e-22  Score=173.43  Aligned_cols=131  Identities=26%  Similarity=0.375  Sum_probs=113.8

Q ss_pred             CCCccceeeecCceEEEEEEecCCc------------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEE
Q 039406          100 GFSDANLLRQDGFGYVHRGVLPNGK------------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLV  161 (243)
Q Consensus       100 ~~~~~~~lg~G~~g~V~~~~~~~~~------------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv  161 (243)
                      .....++||+|.||.||+|++...+                  ...+.|+.|..+|++++|||||+++|+|.+ ...|||
T Consensus       390 ~Itl~r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~t~d~tekflqEa~iMrnfdHphIikLIGv~~e-~P~Wiv  468 (974)
T KOG4257|consen  390 LITLKRLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTDCTPDDTEKFLQEASIMRNFDHPHIIKLIGVCVE-QPMWIV  468 (974)
T ss_pred             hccHHHhhcCCcccceeeeEecccccCcceeeeeehhccCCChhhHHHHHHHHHHHHhCCCcchhheeeeeec-cceeEE
Confidence            3455688999999999999865431                  256889999999999999999999999876 578999


Q ss_pred             EeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHh------hcCC--CcEEECCCCcEEEeccCCceecCCCCc
Q 039406          162 YEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL------HDDL--ANILLDFKFEAKVADFGLAKIASDVNT  232 (243)
Q Consensus       162 ~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~l------H~~~--~NiLl~~~~~~kl~DFG~a~~~~~~~~  232 (243)
                      ||++..|.|..++..++. .++......++.||+.+|.||      |||+  -|||+....-|||+|||++|.+.++..
T Consensus       469 mEL~~~GELr~yLq~nk~-sL~l~tL~ly~~Qi~talaYLeSkrfVHRDIAaRNiLVsSp~CVKLaDFGLSR~~ed~~y  546 (974)
T KOG4257|consen  469 MELAPLGELREYLQQNKD-SLPLRTLTLYCYQICTALAYLESKRFVHRDIAARNILVSSPQCVKLADFGLSRYLEDDAY  546 (974)
T ss_pred             EecccchhHHHHHHhccc-cchHHHHHHHHHHHHHHHHHHHhhchhhhhhhhhheeecCcceeeecccchhhhccccch
Confidence            999999999999987665 589999999999999999998      5677  499999999999999999999876543

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=99.87  E-value=1.7e-21  Score=160.82  Aligned_cols=123  Identities=24%  Similarity=0.309  Sum_probs=103.9

Q ss_pred             ceeeecCceEEEEEEecCC----------------chhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccCCC
Q 039406          105 NLLRQDGFGYVHRGVLPNG----------------KEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNN  168 (243)
Q Consensus       105 ~~lg~G~~g~V~~~~~~~~----------------~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~g  168 (243)
                      +.||+|+||.||+|.....                ......+.+|+.+++.++|+||+++++.+...+..|+||||+.+|
T Consensus         1 ~~lg~G~fg~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~nii~~~~~~~~~~~~~lv~e~~~~g   80 (269)
T cd05042           1 DEIGNGWFGKVLLGEAHRGMSKARVVVKELRASATPDEQLLFLQEVQPYRELNHPNVLQCLGQCIESIPYLLVLEFCPLG   80 (269)
T ss_pred             CcCCccCCceEEEEEEecCCCCeEEEEeecCccCChHHHHHHHHHHHHHHhCCCCCcceEEEEECCCCceEEEEEeCCCC
Confidence            3699999999999964321                113456789999999999999999999999999999999999999


Q ss_pred             CHHHHhccCCC---CCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceec
Q 039406          169 TLVFHLHGKGQ---PTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIA  227 (243)
Q Consensus       169 ~L~~~l~~~~~---~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~  227 (243)
                      +|.+++.....   ....+..++.++.|++.||.|||.        +++|||++.++.+||+|||+++..
T Consensus        81 ~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~  150 (269)
T cd05042          81 DLKNYLRSNRGMVAQMAQKDVLQRMACEVASGLLWLHQADFIHSDLALRNCQLTADLSVKIGDYGLALEQ  150 (269)
T ss_pred             cHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHhcCEecccccHhheEecCCCcEEEecccccccc
Confidence            99999865432   234677888999999999999987        568999999999999999998764

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=99.87  E-value=2.4e-21  Score=158.29  Aligned_cols=123  Identities=24%  Similarity=0.405  Sum_probs=107.2

Q ss_pred             ceeeecCceEEEEEEecCCc--------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccCCCCH
Q 039406          105 NLLRQDGFGYVHRGVLPNGK--------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTL  170 (243)
Q Consensus       105 ~~lg~G~~g~V~~~~~~~~~--------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~g~L  170 (243)
                      +.||+|+||.||+|.+..+.              +....+.+|+++|++++|+||+++++++...+..|+||||+.+++|
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (252)
T cd05084           1 ERIGRGNFGEVFSGRLRADNTPVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDF   80 (252)
T ss_pred             CccCcccCccEEEEEEecCCceEEEEecCccCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEcCCCCeEEEEeeccCCcH
Confidence            46999999999999764322              2346688999999999999999999999999999999999999999


Q ss_pred             HHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          171 VFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       171 ~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      .+++..... .+++..++.++.|++.+|.|||.        +++|||++.++.+||+|||+++...
T Consensus        81 ~~~~~~~~~-~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~  145 (252)
T cd05084          81 LTFLRTEGP-RLKVKELIQMVENAAAGMEYLESKHCIHRDLAARNCLVTEKNVLKISDFGMSREEE  145 (252)
T ss_pred             HHHHHhCCC-CCCHHHHHHHHHHHHHHHHHHHhCCccccccchheEEEcCCCcEEECccccCcccc
Confidence            999865432 48899999999999999999986        5689999999999999999988654

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=99.87  E-value=2.7e-21  Score=158.68  Aligned_cols=132  Identities=26%  Similarity=0.411  Sum_probs=116.5

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCc-----------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccC
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGK-----------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVL  166 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~-----------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~  166 (243)
                      .++|.+.+.||+|+||.||++......           ...+.+.+|+.++++++|+||+++++++......++||||++
T Consensus         5 ~~~~~i~~~ig~g~~~~v~~~~~~~~~~~~vK~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~   84 (261)
T cd05034           5 RESLKLERKLGAGQFGEVWMGTWNGTTKVAVKTLKPGTMSPEAFLQEAQIMKKLRHDKLVQLYAVCSEEEPIYIVTEYMS   84 (261)
T ss_pred             hhheeeeeeeccCcceEEEEEEEcCCceEEEEEecCCccCHHHHHHHHHHHhhCCCCCEeeeeeeeecCCceEEEEeccC
Confidence            478999999999999999999765431           235678999999999999999999999999899999999999


Q ss_pred             CCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          167 NNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       167 ~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      +++|.+++.......+++..++.++.+++.||.|||.        +++||+++.++.+||+|||+++.+..
T Consensus        85 ~~~L~~~i~~~~~~~~~~~~~~~~~~~i~~al~~lh~~~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~  155 (261)
T cd05034          85 KGSLLDFLKSGEGKKLRLPQLVDMAAQIAEGMAYLESRNYIHRDLAARNILVGENLVCKIADFGLARLIED  155 (261)
T ss_pred             CCCHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCcchheEEEcCCCCEEECccccceeccc
Confidence            9999999976554468999999999999999999987        46899999999999999999987653

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=99.87  E-value=2.2e-21  Score=159.76  Aligned_cols=130  Identities=28%  Similarity=0.421  Sum_probs=111.7

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc-----------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccCC
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK-----------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLN  167 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~-----------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~  167 (243)
                      ++|.+.++||+|+||.||++.+..+.           ...+.+.+|+.++++++|+||+++++++. .+..|+||||+.+
T Consensus         6 ~~~~~~~~lg~g~~~~v~~~~~~~~~~valK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~~~~-~~~~~lv~e~~~~   84 (262)
T cd05071           6 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVS-EEPIYIVTEYMSK   84 (262)
T ss_pred             HHeeEeeecCCCCCCcEEEEEecCCceEEEEecccCccCHHHHHHHHHHHHhCCCCCcceEEEEEC-CCCcEEEEEcCCC
Confidence            56899999999999999999765431           13457889999999999999999999875 4568999999999


Q ss_pred             CCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          168 NTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       168 g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      ++|.+++.......+++..++.++.+++.+|.|||+        +++|||++.++.+||+|||+++.+..
T Consensus        85 ~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~~~i~H~dl~p~Nill~~~~~~~L~dfg~~~~~~~  154 (262)
T cd05071          85 GSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIED  154 (262)
T ss_pred             CcHHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHHCCccccccCcccEEEcCCCcEEeccCCceeeccc
Confidence            999999976444457899999999999999999987        46899999999999999999987654

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=99.87  E-value=1.9e-21  Score=161.65  Aligned_cols=130  Identities=25%  Similarity=0.391  Sum_probs=110.8

Q ss_pred             CCCCccceeeecCceEEEEEEecCC------------------chhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNG------------------KEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRML  160 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~------------------~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~l  160 (243)
                      ++|++.+.||+|+||.||+|.....                  ......+.+|+++|++++|+||+++++++...+..|+
T Consensus         5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l   84 (283)
T cd05090           5 SAVRFMEELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINNPQQWGEFQQEASLMAELHHPNIVCLLGVVTQEQPVCM   84 (283)
T ss_pred             hhceeeeeccccCCcceEEEEEecCCCCCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCCeeeEEEEEecCCceEE
Confidence            5788889999999999999974211                  1133568899999999999999999999999999999


Q ss_pred             EEeccCCCCHHHHhccCC---------------CCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEE
Q 039406          161 VYEFVLNNTLVFHLHGKG---------------QPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAK  217 (243)
Q Consensus       161 v~e~~~~g~L~~~l~~~~---------------~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~k  217 (243)
                      ||||+.+++|.+++....               ...+++..++.++.+++.+|.|||.        +++|||++.++.+|
T Consensus        85 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~i~H~dlkp~nili~~~~~~k  164 (283)
T cd05090          85 LFEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAIQIAAGMEYLSSHFFVHKDLAARNILIGEQLHVK  164 (283)
T ss_pred             EEEcCCCCcHHHHHHhcCCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHhcCeehhccccceEEEcCCCcEE
Confidence            999999999999885321               1247888899999999999999987        56999999999999


Q ss_pred             EeccCCceecC
Q 039406          218 VADFGLAKIAS  228 (243)
Q Consensus       218 l~DFG~a~~~~  228 (243)
                      |+|||+++.+.
T Consensus       165 l~dfg~~~~~~  175 (283)
T cd05090         165 ISDLGLSREIY  175 (283)
T ss_pred             ecccccccccc
Confidence            99999998764

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=99.87  E-value=1.5e-21  Score=162.03  Aligned_cols=129  Identities=23%  Similarity=0.314  Sum_probs=113.8

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc-------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEecc
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK-------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFV  165 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~-------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~  165 (243)
                      ++|.+.+.||.|+||.||++....+.             ...+.+.+|+++|++++|+||+++++++..++..|+||||+
T Consensus         5 ~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   84 (280)
T cd06611           5 DIWEIIGELGDGAFGKVYKAQHKETGLFAAAKIIQIESEEELEDFMVEIDILSECKHPNIVGLYEAYFYENKLWILIEFC   84 (280)
T ss_pred             hHHHHHHHhcCCCCceEEEEEEcCCCcEEEEEEEeeCCHHHHHHHHHHHHHHHhCCCCceeEEEEEEecCCeEEEEeecc
Confidence            56888999999999999999876432             24467889999999999999999999999999999999999


Q ss_pred             CCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          166 LNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       166 ~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      ++++|.+++...+. .+++..++.++.|++.+|.|||.        +++||+++.++.+||+|||++....
T Consensus        85 ~~~~L~~~~~~~~~-~l~~~~~~~~~~ql~~~l~~lh~~~i~h~dl~p~nili~~~~~~~l~d~g~~~~~~  154 (280)
T cd06611          85 DGGALDSIMLELER-GLTEPQIRYVCRQMLEALNFLHSHKVIHRDLKAGNILLTLDGDVKLADFGVSAKNK  154 (280)
T ss_pred             CCCcHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCChhhEEECCCCCEEEccCccchhhc
Confidence            99999999875443 58999999999999999999986        4689999999999999999987654

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=99.87  E-value=2.4e-21  Score=159.10  Aligned_cols=130  Identities=26%  Similarity=0.418  Sum_probs=112.1

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc-----------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccCC
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK-----------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLN  167 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~-----------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~  167 (243)
                      ++|++.+.||+|+||.||++....+.           ...+.+.+|+.+|++++|+||+++++++. .+..|++|||+.+
T Consensus         6 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~~~~-~~~~~lv~e~~~~   84 (260)
T cd05070           6 ESLQLIKKLGNGQFGEVWMGTWNGNTKVAVKTLKPGTMSPESFLEEAQIMKKLRHDKLVQLYAVVS-EEPIYIVTEYMSK   84 (260)
T ss_pred             HHhhhhheeccccCceEEEEEecCCceeEEEEecCCCCCHHHHHHHHHHHHhcCCCceEEEEeEEC-CCCcEEEEEecCC
Confidence            57888999999999999999765432           13467899999999999999999999875 4568999999999


Q ss_pred             CCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          168 NTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       168 g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      ++|.+++.......+++..++.++.+++.+|.|||.        +++|||+++++.+||+|||++..+..
T Consensus        85 ~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~di~p~Nili~~~~~~~l~dfg~~~~~~~  154 (260)
T cd05070          85 GSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIERMNYIHRDLRSANILVGDGLVCKIADFGLARLIED  154 (260)
T ss_pred             CcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCccceEEEeCCceEEeCCceeeeeccC
Confidence            999999976544458999999999999999999987        46899999999999999999987654

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.87  E-value=9.2e-22  Score=172.12  Aligned_cols=126  Identities=17%  Similarity=0.192  Sum_probs=108.4

Q ss_pred             CCCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEe
Q 039406          100 GFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYE  163 (243)
Q Consensus       100 ~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e  163 (243)
                      -|..++.||-|+||+|.++...++..                ...-+..|-.||...+++-||+||-.|.+++.+|+||+
T Consensus       630 mFvkik~iGvGAFGeV~Lv~KvDT~~lYAmKTLrKaDVl~rnQvaHVKAERDILAEADn~WVVrLyySFQDkdnLYFVMd  709 (1034)
T KOG0608|consen  630 MFVKIKTIGVGAFGEVCLVRKVDTRALYAMKTLRKADVLMRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFVMD  709 (1034)
T ss_pred             ceEEEeeecccccceeEEEeecchhhHHHHhhhHHHHHHhhhhhhhhhhhhhhHhhcCCcceEEEEEEeccCCceEEEEe
Confidence            37788899999999999997555432                12234568889999999999999999999999999999


Q ss_pred             ccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceec
Q 039406          164 FVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIA  227 (243)
Q Consensus       164 ~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~  227 (243)
                      |+.||++..+|.+.+  .|.+..+++++.++.+|++++|.        ||+|||||.+|+|||+|||||.-+
T Consensus       710 YIPGGDmMSLLIrmg--IFeE~LARFYIAEltcAiesVHkmGFIHRDiKPDNILIDrdGHIKLTDFGLCTGf  779 (1034)
T KOG0608|consen  710 YIPGGDMMSLLIRMG--IFEEDLARFYIAELTCAIESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGF  779 (1034)
T ss_pred             ccCCccHHHHHHHhc--cCHHHHHHHHHHHHHHHHHHHHhccceecccCccceEEccCCceeeeeccccccc
Confidence            999999999988776  58999999999999888887754        679999999999999999999854

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=99.87  E-value=1.7e-21  Score=162.05  Aligned_cols=141  Identities=23%  Similarity=0.325  Sum_probs=116.1

Q ss_pred             ccHHHHHHHhCCCCccceeeecCceEEEEEEecCCch------------hHHHHHHHHHHHHhc-CCCccceEEEEEE--
Q 039406           89 FTYEELARATDGFSDANLLRQDGFGYVHRGVLPNGKE------------GEREFQAEVEIISRV-HHKHLVSLVGYYT--  153 (243)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~------------~~~~~~~E~~~l~~l-~hp~iv~~~~~~~--  153 (243)
                      +.++.+....++|++.+.||+|+||.||++....+..            ....+.+|+.+++++ +|+||+++++++.  
T Consensus         8 ~~~~~~~~~~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~   87 (286)
T cd06638           8 IIFDSFPDPSDTWEIIETIGKGTYGKVFKVLNKKNGSKAAVKILDPIHDIDEEIEAEYNILKALSDHPNVVKFYGMYYKK   87 (286)
T ss_pred             EEeecCCCcccceeeeeeeccCCCcEEEEEEECCCCceeEEEeeccccchHHHHHHHHHHHHHHhcCCCeeeeeeeeeec
Confidence            4445666677999999999999999999997655421            235678899999999 6999999999874  


Q ss_pred             ---eCCeeEEEEeccCCCCHHHHhccC--CCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEec
Q 039406          154 ---AGSQRMLVYEFVLNNTLVFHLHGK--GQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVAD  220 (243)
Q Consensus       154 ---~~~~~~lv~e~~~~g~L~~~l~~~--~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~D  220 (243)
                         .++..++||||+++++|.+++...  ....+++..+..++.+++.||.|||.        +++||+++.++.+||+|
T Consensus        88 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nili~~~~~~kl~d  167 (286)
T cd06638          88 DVKNGDQLWLVLELCNGGSVTDLVKGFLKRGERMEEPIIAYILHEALMGLQHLHVNKTIHRDVKGNNILLTTEGGVKLVD  167 (286)
T ss_pred             ccCCCCeEEEEEeecCCCCHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHhCCccccCCCHHhEEECCCCCEEEcc
Confidence               345799999999999999887531  22357888999999999999999986        46899999999999999


Q ss_pred             cCCceecCC
Q 039406          221 FGLAKIASD  229 (243)
Q Consensus       221 FG~a~~~~~  229 (243)
                      ||+++.+..
T Consensus       168 fg~~~~~~~  176 (286)
T cd06638         168 FGVSAQLTS  176 (286)
T ss_pred             CCceeeccc
Confidence            999987643

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=99.87  E-value=9.1e-22  Score=173.91  Aligned_cols=140  Identities=22%  Similarity=0.256  Sum_probs=115.4

Q ss_pred             CCccceeeecCceEEEEEEecCCch--------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCC------eeEE
Q 039406          101 FSDANLLRQDGFGYVHRGVLPNGKE--------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGS------QRML  160 (243)
Q Consensus       101 ~~~~~~lg~G~~g~V~~~~~~~~~~--------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~------~~~l  160 (243)
                      +...+.||+|+||.||+++.+.+.+              ..+++.+|+++|++|+|+|||+++++-++..      ...+
T Consensus        15 W~~~e~LG~Ga~g~V~rgrnketG~~vAvK~~~~~~~~r~~e~~~~EieilkKLnh~NIVk~f~iee~~~~~~~~~~~vl   94 (732)
T KOG4250|consen   15 WEMDERLGKGAFGNVYRGRNKETGRLVAVKTFNKESSLRPRERWCREIEILKKLNHPNIVKLFDIEETKFLGLVTRLPVL   94 (732)
T ss_pred             eeehhhhcCCccceeeeecccccccchhHHhhhhhcccchHHHHHHHHHHHHHcCchhhhhhcccCCccccCcccccceE
Confidence            4456789999999999999776543              4577889999999999999999999866544      4679


Q ss_pred             EEeccCCCCHHHHhccCC-CCCCCHHHHHHHHHHHHHhhhHhh------c--CCCcEEEC--CCC--cEEEeccCCceec
Q 039406          161 VYEFVLNNTLVFHLHGKG-QPTMDWPTRIKIALGSAKGLAYLH------D--DLANILLD--FKF--EAKVADFGLAKIA  227 (243)
Q Consensus       161 v~e~~~~g~L~~~l~~~~-~~~l~~~~~~~i~~~i~~~l~~lH------~--~~~NiLl~--~~~--~~kl~DFG~a~~~  227 (243)
                      |||||.||+|...+.+-. ...|++...+.++.+++.||.|||      |  ||.||++-  .+|  --||+|||.||-+
T Consensus        95 vmEyC~gGsL~~~L~~PEN~~GLpE~e~l~lL~d~~~al~~LrEn~IvHRDlKP~NIvl~~Gedgq~IyKLtDfG~Arel  174 (732)
T KOG4250|consen   95 VMEYCSGGSLRKVLNSPENAYGLPESEFLDLLSDLVSALRHLRENGIVHRDLKPGNIVLQIGEDGQSIYKLTDFGAAREL  174 (732)
T ss_pred             EEeecCCCcHHHHhcCcccccCCCHHHHHHHHHHHHHHHHHHHHcCceeccCCCCcEEEeecCCCceEEeeecccccccC
Confidence            999999999999997533 235999999999999999999995      4  56999983  334  4699999999999


Q ss_pred             CCCCceeeecccccc
Q 039406          228 SDVNTHVSTRVMGTF  242 (243)
Q Consensus       228 ~~~~~~~~~~~~GT~  242 (243)
                      .++.  ..++++||.
T Consensus       175 ~d~s--~~~S~vGT~  187 (732)
T KOG4250|consen  175 DDNS--LFTSLVGTE  187 (732)
T ss_pred             CCCC--eeeeecCch
Confidence            8776  455688985

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=99.87  E-value=1.8e-21  Score=160.30  Aligned_cols=128  Identities=24%  Similarity=0.310  Sum_probs=112.4

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch-------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEecc
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE-------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFV  165 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~-------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~  165 (243)
                      ++|...+.||+|+||.||++....+.+             ....+.+|+.+++.++|+||+++++.+...+..|+||||+
T Consensus         9 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~~~~l~h~~ii~~~~~~~~~~~~~lv~e~~   88 (267)
T cd06645           9 EDFELIQRIGSGTYGDVYKARNVNTGELAAIKVIKLEPGEDFAVVQQEIIMMKDCKHSNIVAYFGSYLRRDKLWICMEFC   88 (267)
T ss_pred             HHHHHHHHhCCCCCeEEEEEEEcCCCcEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCeeeEEEEEEeCCEEEEEEecc
Confidence            578888999999999999997654322             2345788999999999999999999999999999999999


Q ss_pred             CCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          166 LNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       166 ~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      ++++|.+++...+  .+++..++.++.|++.+|.|||.        +++|||++.++.+||+|||++..+.
T Consensus        89 ~~~~L~~~~~~~~--~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nili~~~~~~~l~dfg~~~~~~  157 (267)
T cd06645          89 GGGSLQDIYHVTG--PLSESQIAYVSRETLQGLYYLHSKGKMHRDIKGANILLTDNGHVKLADFGVSAQIT  157 (267)
T ss_pred             CCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEECcceeeeEcc
Confidence            9999999986554  48999999999999999999986        4689999999999999999998664

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=99.87  E-value=1.4e-21  Score=176.06  Aligned_cols=147  Identities=23%  Similarity=0.326  Sum_probs=123.1

Q ss_pred             HHHhCCCCccceeeecCceEEEEEEecCCch------------hHHHHHHHHHHHHhc-CCCccceEEEEEEe-----CC
Q 039406           95 ARATDGFSDANLLRQDGFGYVHRGVLPNGKE------------GEREFQAEVEIISRV-HHKHLVSLVGYYTA-----GS  156 (243)
Q Consensus        95 ~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~------------~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~-----~~  156 (243)
                      ..-++.|++.+.||.|.+|.||+++.+..+.            ..+.+..|.++|+.+ +|||++.+|++|..     ++
T Consensus        15 pdp~d~~ei~evig~Gtygkv~k~k~~~~~~~aa~kI~~~~~d~deEiE~eynil~~~~~hpnv~~fyg~~~k~~~~~~D   94 (953)
T KOG0587|consen   15 PDPADIFEIIEVIGNGTYGKVYKGRHVKTGQLAAIKIMDPTEDEEEEIELEYNMLKKYSHHPNVATFYGAFIKKDPGNGD   94 (953)
T ss_pred             CCCCCccEEEEEEeeccceeEEEEeeeecCceeeeEeecCCccccHHHHHHHHHHHhccCCCCcceEEEEEEEecCCCCC
Confidence            3345789999999999999999998665432            346677788899887 79999999999863     46


Q ss_pred             eeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc------CC--CcEEECCCCcEEEeccCCceecC
Q 039406          157 QRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD------DL--ANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       157 ~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~------~~--~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      .+|||||||.+|+.-|+++......+.|..+..|+..+|.||.+||+      |+  .|||++.++.|||+|||++..+.
T Consensus        95 qLWLVMEfC~gGSVTDLVKn~~g~rl~E~~IaYI~re~lrgl~HLH~nkviHRDikG~NiLLT~e~~VKLvDFGvSaQld  174 (953)
T KOG0587|consen   95 QLWLVMEFCGGGSVTDLVKNTKGNRLKEEWIAYILREILRGLAHLHNNKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLD  174 (953)
T ss_pred             eEEEEeeccCCccHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHhhcceeeecccCceEEEeccCcEEEeeeeeeeeee
Confidence            79999999999999999988766779999999999999999999976      44  79999999999999999999886


Q ss_pred             CCCceeeecccccc
Q 039406          229 DVNTHVSTRVMGTF  242 (243)
Q Consensus       229 ~~~~~~~~~~~GT~  242 (243)
                      .... ...+++|||
T Consensus       175 sT~g-rRnT~iGtP  187 (953)
T KOG0587|consen  175 STVG-RRNTFIGTP  187 (953)
T ss_pred             cccc-cccCcCCCc
Confidence            5443 233467876

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.86  E-value=2.6e-22  Score=175.34  Aligned_cols=140  Identities=24%  Similarity=0.330  Sum_probs=120.2

Q ss_pred             HHHHHHhCCCCccceeeecCceEEEEEEecCCc------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeE
Q 039406           92 EELARATDGFSDANLLRQDGFGYVHRGVLPNGK------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRM  159 (243)
Q Consensus        92 ~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~  159 (243)
                      ++++....+.....+||.|.||.||.|+|++..            -..+.|+.|..+|+.++|||+|+|+++|..+..+|
T Consensus       260 DkWEmeRtdItMkhKLGGGQYGeVYeGvWKkyslTvAVKtLKEDtMeveEFLkEAAvMKeikHpNLVqLLGVCT~EpPFY  339 (1157)
T KOG4278|consen  260 DKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTHEPPFY  339 (1157)
T ss_pred             chhhccchheeeeeccCCCcccceeeeeeeccceeeehhhhhhcchhHHHHHHHHHHHHhhcCccHHHHhhhhccCCCeE
Confidence            344444456667789999999999999887632            25678999999999999999999999999999999


Q ss_pred             EEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHh------hcCC--CcEEECCCCcEEEeccCCceecCCCC
Q 039406          160 LVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL------HDDL--ANILLDFKFEAKVADFGLAKIASDVN  231 (243)
Q Consensus       160 lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~l------H~~~--~NiLl~~~~~~kl~DFG~a~~~~~~~  231 (243)
                      ||.|||.+|+|.+++.+..+.-++--..+.++.||..|++||      |+|+  -|+|+.++..|||+||||++++..+.
T Consensus       340 IiTEfM~yGNLLdYLRecnr~ev~avvLlyMAtQIsSaMeYLEkknFIHRDLAARNCLVgEnhiVKvADFGLsRlMtgDT  419 (1157)
T KOG4278|consen  340 IITEFMCYGNLLDYLRECNRSEVPAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHIVKVADFGLSRLMTGDT  419 (1157)
T ss_pred             EEEecccCccHHHHHHHhchhhcchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccceEEeeccchhhhhcCCc
Confidence            999999999999999876655566667778899999999987      8888  49999999999999999999987654

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=99.86  E-value=3.8e-21  Score=157.97  Aligned_cols=130  Identities=28%  Similarity=0.398  Sum_probs=111.5

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc-----------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccCC
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK-----------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLN  167 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~-----------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~  167 (243)
                      ++|.+.+.||+|+||.||++.+..+.           ...+.+.+|+.++++++|+||+++++++. .+..|+||||+.+
T Consensus         6 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~lK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v~e~~~~   84 (260)
T cd05069           6 ESLRLDVKLGQGCFGEVWMGTWNGTTKVAIKTLKPGTMMPEAFLQEAQIMKKLRHDKLVPLYAVVS-EEPIYIVTEFMGK   84 (260)
T ss_pred             HHeeeeeeecCcCCCeEEEEEEcCCceEEEEEcccCCccHHHHHHHHHHHHhCCCCCeeeEEEEEc-CCCcEEEEEcCCC
Confidence            56888899999999999999765432           13467889999999999999999998875 4568999999999


Q ss_pred             CCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          168 NTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       168 g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      ++|.+++.......+++..++.++.+++.||.|||.        +++|||+++++.+||+|||+++.+..
T Consensus        85 ~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~dl~~~Nill~~~~~~~l~dfg~~~~~~~  154 (260)
T cd05069          85 GSLLDFLKEGDGKYLKLPQLVDMAAQIADGMAYIERMNYIHRDLRAANILVGDNLVCKIADFGLARLIED  154 (260)
T ss_pred             CCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHhCCEeecccCcceEEEcCCCeEEECCCccceEccC
Confidence            999999976544458899999999999999999987        46899999999999999999987643

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=99.86  E-value=3.7e-21  Score=159.89  Aligned_cols=129  Identities=25%  Similarity=0.372  Sum_probs=109.1

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc------------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK------------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRML  160 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~------------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~l  160 (243)
                      ++|.+.+.||+|+||.||+|.+..+.                  .....+..|+.++++++|+||+++++++. ....++
T Consensus         7 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~l~h~~iv~~~~~~~-~~~~~~   85 (279)
T cd05111           7 TELRKLKLLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDRSGRQTFQEITDHMLAMGSLDHAYIVRLLGICP-GASLQL   85 (279)
T ss_pred             hhceeccccCccCCcceEEEEEcCCCCceeeEEEEeecccccchHHHHHHHHHHHHHhcCCCCCcceEEEEEC-CCccEE
Confidence            57888899999999999999764321                  12355677888899999999999999875 456789


Q ss_pred             EEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          161 VYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       161 v~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      +|||+.+|+|.+++..... .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++.+..
T Consensus        86 i~e~~~~gsL~~~l~~~~~-~~~~~~~~~i~~qi~~~l~~lH~~~iiH~dlkp~nili~~~~~~kl~Dfg~~~~~~~  161 (279)
T cd05111          86 VTQLSPLGSLLDHVRQHRD-SLDPQRLLNWCVQIAKGMYYLEEHRMVHRNLAARNILLKSDSIVQIADFGVADLLYP  161 (279)
T ss_pred             EEEeCCCCcHHHHHHhccc-CCCHHHHHHHHHHHHHHHHHHHHCCEeccccCcceEEEcCCCcEEEcCCccceeccC
Confidence            9999999999999975443 58999999999999999999987        56899999999999999999987643

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=99.86  E-value=3.6e-21  Score=158.05  Aligned_cols=130  Identities=26%  Similarity=0.370  Sum_probs=112.8

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCc-----------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccC
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGK-----------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVL  166 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~-----------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~  166 (243)
                      .++|.+.++||+|+||.||+|..+.+.           .....+.+|+.+|++++|+||+++++++. .+..|+||||+.
T Consensus         5 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~a~K~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v~e~~~   83 (260)
T cd05067           5 RETLKLVKKLGAGQFGEVWMGYYNGHTKVAIKSLKQGSMSPEAFLAEANLMKQLQHPRLVRLYAVVT-QEPIYIITEYME   83 (260)
T ss_pred             hHHceeeeeeccCccceEEeeecCCCceEEEEEecCCCCcHHHHHHHHHHHHhcCCcCeeeEEEEEc-cCCcEEEEEcCC
Confidence            467899999999999999999765432           23567899999999999999999999864 567899999999


Q ss_pred             CCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          167 NNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       167 ~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      +++|.+++.......+++..++.++.+++.+|.|||.        +++||+++.++.++|+|||++....
T Consensus        84 ~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~  153 (260)
T cd05067          84 NGSLVDFLKTPEGIKLTINKLIDMAAQIAEGMAFIERKNYIHRDLRAANILVSETLCCKIADFGLARLIE  153 (260)
T ss_pred             CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHhcCCeecccccHHhEEEcCCCCEEEccCcceeecC
Confidence            9999999876554468999999999999999999986        4589999999999999999998765

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=99.86  E-value=2.2e-21  Score=160.83  Aligned_cols=132  Identities=23%  Similarity=0.368  Sum_probs=111.4

Q ss_pred             HhCCCCccceeeecCceEEEEEEecCC-------------------chhHHHHHHHHHHHHhcCCCccceEEEEEEeCCe
Q 039406           97 ATDGFSDANLLRQDGFGYVHRGVLPNG-------------------KEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQ  157 (243)
Q Consensus        97 ~~~~~~~~~~lg~G~~g~V~~~~~~~~-------------------~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~  157 (243)
                      ..++|+..+.||+|+||.||+|.+...                   ......+.+|+.+++.++|+||+++++++...+.
T Consensus         4 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~   83 (277)
T cd05062           4 AREKITMSRELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQP   83 (277)
T ss_pred             cHHHceeeeeeccccCCeEEEEEeccCCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCC
Confidence            457899999999999999998865321                   0123457899999999999999999999999999


Q ss_pred             eEEEEeccCCCCHHHHhccCCC--------CCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEecc
Q 039406          158 RMLVYEFVLNNTLVFHLHGKGQ--------PTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADF  221 (243)
Q Consensus       158 ~~lv~e~~~~g~L~~~l~~~~~--------~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DF  221 (243)
                      .++||||+.+++|.+++.....        ..+++..++.++.+++.+|.|||.        +|+|||++.++.+||+||
T Consensus        84 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~vH~dlkp~Nil~~~~~~~~l~df  163 (277)
T cd05062          84 TLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDF  163 (277)
T ss_pred             eEEEEecCCCCCHHHHHHHcCccccccccccCCCHHHHHHHHHHHHHHHHHHHHCCcccCCcchheEEEcCCCCEEECCC
Confidence            9999999999999999865321        235778889999999999999987        568999999999999999


Q ss_pred             CCceecC
Q 039406          222 GLAKIAS  228 (243)
Q Consensus       222 G~a~~~~  228 (243)
                      |+++.+.
T Consensus       164 g~~~~~~  170 (277)
T cd05062         164 GMTRDIY  170 (277)
T ss_pred             CCccccC
Confidence            9998653

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=99.86  E-value=1.5e-21  Score=174.73  Aligned_cols=147  Identities=18%  Similarity=0.149  Sum_probs=116.6

Q ss_pred             HHhCCCCccceeeecCceEEEEEEecCCc---------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCC----
Q 039406           96 RATDGFSDANLLRQDGFGYVHRGVLPNGK---------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGS----  156 (243)
Q Consensus        96 ~~~~~~~~~~~lg~G~~g~V~~~~~~~~~---------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~----  156 (243)
                      ...++|.+.+.||+|+||.||+++...+.               .....+.+|+.+|..++|+||+++++.+...+    
T Consensus        29 ~~~~rY~i~~~LG~G~fG~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~Ei~~l~~~~h~~iv~~~~~~~~~~~~~~  108 (496)
T PTZ00283         29 EQAKKYWISRVLGSGATGTVLCAKRVSDGEPFAVKVVDMEGMSEADKNRAQAEVCCLLNCDFFSIVKCHEDFAKKDPRNP  108 (496)
T ss_pred             ccCCCEEEEEEEecCCCEEEEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHHhcCCCCcEEEeecceecccccCc
Confidence            34478999999999999999999765432               23456788999999999999999988775432    


Q ss_pred             ----eeEEEEeccCCCCHHHHhccCC--CCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccC
Q 039406          157 ----QRMLVYEFVLNNTLVFHLHGKG--QPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFG  222 (243)
Q Consensus       157 ----~~~lv~e~~~~g~L~~~l~~~~--~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG  222 (243)
                          .+++||||+.+|+|.+++..+.  ...+.+..+..++.|++.||.|||.        ||+|||++.++.+||+|||
T Consensus       109 ~~~~~i~lV~Ey~~~gsL~~~l~~~~~~~~~l~e~~~~~i~~qll~aL~~lH~~~IiHrDLKP~NILl~~~~~vkL~DFG  188 (496)
T PTZ00283        109 ENVLMIALVLDYANAGDLRQEIKSRAKTNRTFREHEAGLLFIQVLLAVHHVHSKHMIHRDIKSANILLCSNGLVKLGDFG  188 (496)
T ss_pred             ccceEEEEEEeCCCCCcHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEeCCCCEEEEecc
Confidence                3789999999999999886432  2358899999999999999999986        5689999999999999999


Q ss_pred             CceecCCCCc-eeeecccccc
Q 039406          223 LAKIASDVNT-HVSTRVMGTF  242 (243)
Q Consensus       223 ~a~~~~~~~~-~~~~~~~GT~  242 (243)
                      +++.+..... ......+||+
T Consensus       189 ls~~~~~~~~~~~~~~~~Gt~  209 (496)
T PTZ00283        189 FSKMYAATVSDDVGRTFCGTP  209 (496)
T ss_pred             cCeeccccccccccccccCCc
Confidence            9987653321 1222345664

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=99.86  E-value=2.5e-21  Score=162.08  Aligned_cols=130  Identities=23%  Similarity=0.385  Sum_probs=110.9

Q ss_pred             CCCCccceeeecCceEEEEEEecCC----------------------------chhHHHHHHHHHHHHhcCCCccceEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNG----------------------------KEGEREFQAEVEIISRVHHKHLVSLVG  150 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~----------------------------~~~~~~~~~E~~~l~~l~hp~iv~~~~  150 (243)
                      ++|.+.+.||+|+||.||+|+....                            ......+.+|+++|++++|+||+++++
T Consensus         5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~   84 (295)
T cd05097           5 QQLRLKEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKTARNDFLKEIKIMSRLKNPNIIRLLG   84 (295)
T ss_pred             HhCeehhccCCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCcCeEEE
Confidence            5789999999999999998764321                            113456889999999999999999999


Q ss_pred             EEEeCCeeEEEEeccCCCCHHHHhccCC----------CCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECC
Q 039406          151 YYTAGSQRMLVYEFVLNNTLVFHLHGKG----------QPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDF  212 (243)
Q Consensus       151 ~~~~~~~~~lv~e~~~~g~L~~~l~~~~----------~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~  212 (243)
                      ++...+..++||||+.+++|.+++....          ...+.+..++.++.+++.||.|||.        +|+|||++.
T Consensus        85 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~i~H~dlkp~Nill~~  164 (295)
T cd05097          85 VCVSDDPLCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKYLASLNFVHRDLATRNCLVGN  164 (295)
T ss_pred             EEcCCCccEEEEecCCCCcHHHHHHhccccccccccccCCcccHHHHHHHHHHHHHHHHHHHhcCeeccccChhhEEEcC
Confidence            9999999999999999999999886432          1136788899999999999999987        568999999


Q ss_pred             CCcEEEeccCCceecC
Q 039406          213 KFEAKVADFGLAKIAS  228 (243)
Q Consensus       213 ~~~~kl~DFG~a~~~~  228 (243)
                      ++.+||+|||+++.+.
T Consensus       165 ~~~~kl~dfg~~~~~~  180 (295)
T cd05097         165 HYTIKIADFGMSRNLY  180 (295)
T ss_pred             CCcEEecccccccccc
Confidence            9999999999998654

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=99.86  E-value=2.9e-21  Score=168.47  Aligned_cols=131  Identities=24%  Similarity=0.363  Sum_probs=110.5

Q ss_pred             hCCCCccceeeecCceEEEEEEecCC-------------------chhHHHHHHHHHHHHhcC-CCccceEEEEEEeCCe
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNG-------------------KEGEREFQAEVEIISRVH-HKHLVSLVGYYTAGSQ  157 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~-------------------~~~~~~~~~E~~~l~~l~-hp~iv~~~~~~~~~~~  157 (243)
                      .++|.+.+.||+|+||.||+|++...                   ....+.+.+|+++|.++. |+||+++++++...+.
T Consensus        36 ~~~~~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~E~~~l~~l~~H~niv~~~~~~~~~~~  115 (401)
T cd05107          36 RDNLVLGRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTARSSEKQALMSELKIMSHLGPHLNIVNLLGACTKGGP  115 (401)
T ss_pred             HHHeehhhhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCCCChhHHHHHHHHHHHHHhcCCCCCeEEEEEEEccCCC
Confidence            35678889999999999999975321                   112346889999999997 9999999999999999


Q ss_pred             eEEEEeccCCCCHHHHhccCCC----------------------------------------------------------
Q 039406          158 RMLVYEFVLNNTLVFHLHGKGQ----------------------------------------------------------  179 (243)
Q Consensus       158 ~~lv~e~~~~g~L~~~l~~~~~----------------------------------------------------------  179 (243)
                      +++|||||.+|+|.++++..+.                                                          
T Consensus       116 ~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (401)
T cd05107         116 IYIITEYCRYGDLVDYLHRNKHTFLQYYLDKNRDDGSLISGGSTPLSQRKSHVSLGSESDGGYMDMSKDESADYVPMQDM  195 (401)
T ss_pred             cEEEEeccCCCcHHHHHHhccccchhhhcccccccccccccccccccccccchhhhhccCccccccCCccccCccchhcc
Confidence            9999999999999999864321                                                          


Q ss_pred             --------------------------------------CCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCC
Q 039406          180 --------------------------------------PTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFK  213 (243)
Q Consensus       180 --------------------------------------~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~  213 (243)
                                                            ..+++..++.++.|++.||.|||.        +++|||++.+
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrdlkp~NiLl~~~  275 (401)
T cd05107         196 KGTVKYADIESSNYESPYDQYLPSAPERTRRDTLINESPALSYMDLVGFSYQVANGMEFLASKNCVHRDLAARNVLICEG  275 (401)
T ss_pred             hhhhhhhhhhccCcCCchhhhhcccCCCcchhhhhcCCCCCCHHHHHHHHHHHHHHHHHHhcCCcCcccCCcceEEEeCC
Confidence                                                  235777888999999999999987        4689999999


Q ss_pred             CcEEEeccCCceecC
Q 039406          214 FEAKVADFGLAKIAS  228 (243)
Q Consensus       214 ~~~kl~DFG~a~~~~  228 (243)
                      +.+||+|||+++.+.
T Consensus       276 ~~~kL~DfGla~~~~  290 (401)
T cd05107         276 KLVKICDFGLARDIM  290 (401)
T ss_pred             CEEEEEecCcceecc
Confidence            999999999998754

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=99.86  E-value=6.3e-21  Score=159.36  Aligned_cols=128  Identities=22%  Similarity=0.322  Sum_probs=112.5

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc-------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEecc
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK-------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFV  165 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~-------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~  165 (243)
                      +.|++++.||.|+||.||++....+.             ...+.+.+|+.+++.++|+||+++++++..++.+|+||||+
T Consensus        12 ~~y~i~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   91 (292)
T cd06644          12 EVWEIIGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYMVEIEILATCNHPYIVKLLGAFYWDGKLWIMIEFC   91 (292)
T ss_pred             hhhhhhheecCCCCeEEEEEEECCCCceEEEEEeccCCHHHHHHHHHHHHHHHhCCCCcEeeeEEEEEeCCeEEEEEecC
Confidence            66889999999999999999765532             24567888999999999999999999999999999999999


Q ss_pred             CCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceec
Q 039406          166 LNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIA  227 (243)
Q Consensus       166 ~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~  227 (243)
                      ++++|..++.+... .+++..++.++.|++.+|.|||.        +++|||++.++.+||+|||++...
T Consensus        92 ~~~~l~~~~~~~~~-~l~~~~~~~~~~ql~~~l~~lH~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~  160 (292)
T cd06644          92 PGGAVDAIMLELDR-GLTEPQIQVICRQMLEALQYLHSMKIIHRDLKAGNVLLTLDGDIKLADFGVSAKN  160 (292)
T ss_pred             CCCcHHHHHHhhcC-CCCHHHHHHHHHHHHHHHHHHhcCCeeecCCCcceEEEcCCCCEEEccCccceec
Confidence            99999888754433 48999999999999999999987        568999999999999999998764

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>PHA02988 hypothetical protein; Provisional

Probab=99.86  E-value=4.4e-21  Score=159.99  Aligned_cols=124  Identities=19%  Similarity=0.323  Sum_probs=106.5

Q ss_pred             cceeeecCceEEEEEEecCCc--------------hhHHHHHHHHHHHHhcCCCccceEEEEEEe----CCeeEEEEecc
Q 039406          104 ANLLRQDGFGYVHRGVLPNGK--------------EGEREFQAEVEIISRVHHKHLVSLVGYYTA----GSQRMLVYEFV  165 (243)
Q Consensus       104 ~~~lg~G~~g~V~~~~~~~~~--------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~----~~~~~lv~e~~  165 (243)
                      ...||+|+++.||+|.+.+..              ...+.+.+|+.+|++++|+||+++++++.+    ...+++|||||
T Consensus        25 ~~~i~~g~~~~v~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~~~g~~~~~~~~~~~~~lv~Ey~  104 (283)
T PHA02988         25 SVLIKENDQNSIYKGIFNNKEVIIRTFKKFHKGHKVLIDITENEIKNLRRIDSNNILKIYGFIIDIVDDLPRLSLILEYC  104 (283)
T ss_pred             CeEEeeCCceEEEEEEECCEEEEEEeccccccccHHHHHHHHHHHHHHHhcCCCCEEEEeeeEEecccCCCceEEEEEeC
Confidence            468999999999999864422              124667899999999999999999999877    45789999999


Q ss_pred             CCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc---------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          166 LNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD---------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       166 ~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~---------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      .+|+|.+++....  .+++...+.++.+++.||.|||.         +++|||++.++.+||+|||+++.+..
T Consensus       105 ~~g~L~~~l~~~~--~~~~~~~~~i~~~i~~~l~~lH~~~~~~Hrdlkp~nill~~~~~~kl~dfg~~~~~~~  175 (283)
T PHA02988        105 TRGYLREVLDKEK--DLSFKTKLDMAIDCCKGLYNLYKYTNKPYKNLTSVSFLVTENYKLKIICHGLEKILSS  175 (283)
T ss_pred             CCCcHHHHHhhCC--CCChhHHHHHHHHHHHHHHHHHhcCCCCCCcCChhhEEECCCCcEEEcccchHhhhcc
Confidence            9999999997654  48899999999999999999985         35899999999999999999986543

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=99.86  E-value=3.8e-21  Score=159.70  Aligned_cols=130  Identities=25%  Similarity=0.429  Sum_probs=112.1

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc-------------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK-------------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRM  159 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~-------------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~  159 (243)
                      ++|.+.+.||+|+||.||+|......                   .....+.+|+.+|.+++|+||+++++++...+..|
T Consensus         5 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~   84 (283)
T cd05048           5 SAVRFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAELMSDLQHPNIVCLLGVCTKEQPTC   84 (283)
T ss_pred             HHcchhhcccCccCCcEEEEEEecCCCCcceeeEEEEecccCCCHHHHHHHHHHHHHHHhcCCcccceEEEEEcCCCceE
Confidence            57888999999999999999754322                   13456889999999999999999999999999999


Q ss_pred             EEEeccCCCCHHHHhccCCC--------------CCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEE
Q 039406          160 LVYEFVLNNTLVFHLHGKGQ--------------PTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAK  217 (243)
Q Consensus       160 lv~e~~~~g~L~~~l~~~~~--------------~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~k  217 (243)
                      ++|||+++++|.+++.....              ..+++..++.++.|++.||.|||.        +++|||+++++.+|
T Consensus        85 ~~~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~al~~lH~~~i~H~dlkp~Nil~~~~~~~~  164 (283)
T cd05048          85 MLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQIAAGMEYLSSHHFVHRDLAARNCLVGEGLTVK  164 (283)
T ss_pred             EEEecCCCCcHHHHHHhcCCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCeeccccccceEEEcCCCcEE
Confidence            99999999999999865321              347888999999999999999987        56999999999999


Q ss_pred             EeccCCceecC
Q 039406          218 VADFGLAKIAS  228 (243)
Q Consensus       218 l~DFG~a~~~~  228 (243)
                      |+|||+++...
T Consensus       165 L~dfg~~~~~~  175 (283)
T cd05048         165 ISDFGLSRDIY  175 (283)
T ss_pred             ECCCcceeecc
Confidence            99999998653

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=99.86  E-value=4.4e-21  Score=157.07  Aligned_cols=131  Identities=29%  Similarity=0.474  Sum_probs=115.5

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCc----------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccCC
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGK----------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLN  167 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~----------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~  167 (243)
                      .++|.+.+.||.|+||.||+|......          ...+.+.+|+.++++++|+||+++++++.+.+..|+||||+.+
T Consensus         5 ~~~~~~~~~ig~g~~g~v~~~~~~~~~v~iK~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~   84 (256)
T cd05039           5 SKELKLGATIGKGEFGDVMLGDYRGQKVAVKCLKDDSTAAQAFLAEASVMTTLRHPNLVQLLGVVLQGNPLYIVTEYMAK   84 (256)
T ss_pred             hhhccceeeeecCCCceEEEEEecCcEEEEEEeccchhHHHHHHHHHHHHHhcCCcceeeeEEEEcCCCCeEEEEEecCC
Confidence            367888999999999999999765331          1356789999999999999999999999999999999999999


Q ss_pred             CCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          168 NTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       168 g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      ++|.+++.......+++..++.++.|++.+|.|||.        +++|||++.++.+||+|||+++...
T Consensus        85 ~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~~i~H~di~p~Nili~~~~~~~l~d~g~~~~~~  153 (256)
T cd05039          85 GSLVDYLRSRGRAVITLAQQLGFALDVCEGMEYLEEKNFVHRDLAARNVLVSEDLVAKVSDFGLAKEAS  153 (256)
T ss_pred             CcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCccchhcccceEEEeCCCCEEEcccccccccc
Confidence            999999976554458999999999999999999987        5689999999999999999998764

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=99.86  E-value=4.3e-21  Score=158.45  Aligned_cols=124  Identities=27%  Similarity=0.304  Sum_probs=104.0

Q ss_pred             ceeeecCceEEEEEEecCCc----------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccCCC
Q 039406          105 NLLRQDGFGYVHRGVLPNGK----------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNN  168 (243)
Q Consensus       105 ~~lg~G~~g~V~~~~~~~~~----------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~g  168 (243)
                      +.||+|+||.||+|....+.                .....+.+|+.++++++|+||+++++++.+...+++||||+++|
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g   80 (269)
T cd05087           1 KEIGNGWFGKVILGEVNSGYTPAQVVVKELRVSASVQEQMKFLEEAQPYRSLQHSNLLQCLGQCTEVTPYLLVMEFCPLG   80 (269)
T ss_pred             CcccccCCceEEEEEEcCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCCcEEEEECCCCC
Confidence            46999999999999654321                12346888999999999999999999999999999999999999


Q ss_pred             CHHHHhccCC---CCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          169 TLVFHLHGKG---QPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       169 ~L~~~l~~~~---~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      +|.+++....   ....++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++...
T Consensus        81 ~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dlkp~nil~~~~~~~kL~dfg~~~~~~  151 (269)
T cd05087          81 DLKGYLRSCRKAELMTPDPTTLQRMACEIALGLLHLHKNNFIHSDLALRNCLLTADLTVKIGDYGLSHNKY  151 (269)
T ss_pred             cHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHCCEeccccCcceEEEcCCCcEEECCcccccccc
Confidence            9999986432   1235677788899999999999986        5689999999999999999997653

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=99.86  E-value=4.6e-21  Score=160.02  Aligned_cols=129  Identities=21%  Similarity=0.341  Sum_probs=109.9

Q ss_pred             CCCccceeeecCceEEEEEEecCC-------------------chhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEE
Q 039406          100 GFSDANLLRQDGFGYVHRGVLPNG-------------------KEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRML  160 (243)
Q Consensus       100 ~~~~~~~lg~G~~g~V~~~~~~~~-------------------~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~l  160 (243)
                      +|++.+.||+|+||.||+|.....                   ....+.+.+|+.+|+.++|+||+++++.+...+..++
T Consensus         1 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l   80 (290)
T cd05045           1 NLVLGKTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSSELRDLLSEFNLLKQVNHPHVIKLYGACSQDGPLLL   80 (290)
T ss_pred             CccccccccCcCCcceEEEEEecCCCCCcceeEEEEecCCCCCHHHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCCcEE
Confidence            477889999999999999875321                   1134568899999999999999999999999999999


Q ss_pred             EEeccCCCCHHHHhccCC----------------------CCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEE
Q 039406          161 VYEFVLNNTLVFHLHGKG----------------------QPTMDWPTRIKIALGSAKGLAYLHD--------DLANILL  210 (243)
Q Consensus       161 v~e~~~~g~L~~~l~~~~----------------------~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl  210 (243)
                      ||||+.+++|.+++....                      ...+++..++.++.|++.+|.|||.        +|+|||+
T Consensus        81 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~ivH~dikp~nill  160 (290)
T cd05045          81 IVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDERALTMGDLISFAWQISRGMQYLAEMKLVHRDLAARNVLV  160 (290)
T ss_pred             EEEecCCCCHHHHHHhcCCccccccccccccccccccCccccccCHHHHHHHHHHHHHHHHHHHHCCeehhhhhhheEEE
Confidence            999999999999875421                      1247888999999999999999987        5699999


Q ss_pred             CCCCcEEEeccCCceecC
Q 039406          211 DFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       211 ~~~~~~kl~DFG~a~~~~  228 (243)
                      ++++.+||+|||+++.+.
T Consensus       161 ~~~~~~kl~dfg~~~~~~  178 (290)
T cd05045         161 AEGRKMKISDFGLSRDVY  178 (290)
T ss_pred             cCCCcEEecccccccccc
Confidence            999999999999998653

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>PTZ00284 protein kinase; Provisional

Probab=99.86  E-value=1.9e-20  Score=166.69  Aligned_cols=132  Identities=20%  Similarity=0.290  Sum_probs=104.3

Q ss_pred             HHHHHhCCCCccceeeecCceEEEEEEecCCch------------hHHHHHHHHHHHHhcCC------CccceEEEEEEe
Q 039406           93 ELARATDGFSDANLLRQDGFGYVHRGVLPNGKE------------GEREFQAEVEIISRVHH------KHLVSLVGYYTA  154 (243)
Q Consensus        93 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~------------~~~~~~~E~~~l~~l~h------p~iv~~~~~~~~  154 (243)
                      ++....++|.+.++||+|+||.||+|++....+            ....+..|+.+++.++|      .+|++++++|..
T Consensus       123 ~~~~~~~~y~i~~~lG~G~fg~V~~a~~~~~~~~vAvK~i~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~i~~~~~~  202 (467)
T PTZ00284        123 DIDVSTQRFKILSLLGEGTFGKVVEAWDRKRKEYCAVKIVRNVPKYTRDAKIEIQFMEKVRQADPADRFPLMKIQRYFQN  202 (467)
T ss_pred             ccccCCCcEEEEEEEEeccCEEEEEEEEcCCCeEEEEEEEecchhhHHHHHHHHHHHHHHhhcCcccCcceeeeEEEEEc
Confidence            344456889999999999999999998755432            23345668888877754      458889888875


Q ss_pred             C-CeeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc---------CCCcEEECCCC----------
Q 039406          155 G-SQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD---------DLANILLDFKF----------  214 (243)
Q Consensus       155 ~-~~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~---------~~~NiLl~~~~----------  214 (243)
                      . +.+|||||++ +++|.+++...+  .+.+..++.|+.||+.||.|||.         |++|||++.++          
T Consensus       203 ~~~~~~iv~~~~-g~~l~~~l~~~~--~l~~~~~~~i~~qi~~aL~yLH~~~gIiHrDlKP~NILl~~~~~~~~~~~~~~  279 (467)
T PTZ00284        203 ETGHMCIVMPKY-GPCLLDWIMKHG--PFSHRHLAQIIFQTGVALDYFHTELHLMHTDLKPENILMETSDTVVDPVTNRA  279 (467)
T ss_pred             CCceEEEEEecc-CCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHhcCCeecCCCCHHHEEEecCCcccccccccc
Confidence            4 5789999998 778988886554  48999999999999999999985         45899998765          


Q ss_pred             ------cEEEeccCCceec
Q 039406          215 ------EAKVADFGLAKIA  227 (243)
Q Consensus       215 ------~~kl~DFG~a~~~  227 (243)
                            .+||+|||++...
T Consensus       280 ~~~~~~~vkl~DfG~~~~~  298 (467)
T PTZ00284        280 LPPDPCRVRICDLGGCCDE  298 (467)
T ss_pred             cCCCCceEEECCCCccccC
Confidence                  4999999988653

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=99.86  E-value=3.8e-21  Score=158.81  Aligned_cols=121  Identities=19%  Similarity=0.267  Sum_probs=103.1

Q ss_pred             eeeecCceEEEEEEecCCc----------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccCCCC
Q 039406          106 LLRQDGFGYVHRGVLPNGK----------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNT  169 (243)
Q Consensus       106 ~lg~G~~g~V~~~~~~~~~----------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~g~  169 (243)
                      .||+|+||.||++......                ...+.+.+|+.+++.++|+||+++++.+.+....|+||||+.+|+
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~   81 (268)
T cd05086           2 EIGNGWFGKVLLSEIYTDTGVARVVVKELKANASSKEQNEFLQQGDPYRILQHPNILQCLGQCVEAIPYLLVFEYCELGD   81 (268)
T ss_pred             cCCCCcCceEEEEEEEcCCCcceEEEEEecCCCChHHHHHHHHHHHHHhccCCcchhheEEEecCCCccEEEEecCCCCc
Confidence            6999999999998643221                234678999999999999999999999999999999999999999


Q ss_pred             HHHHhccCC--CCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCcee
Q 039406          170 LVFHLHGKG--QPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKI  226 (243)
Q Consensus       170 L~~~l~~~~--~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~  226 (243)
                      |.+++....  ...+.+..++.++.|++.||.|||.        +++|||++.++.+||+|||++..
T Consensus        82 L~~~l~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~H~dikp~nil~~~~~~~~l~Dfg~~~~  148 (268)
T cd05086          82 LKSYLSQEQWHRRNSQLLLLQRMACEIAAGVTHMHKHNFLHSDLALRNCFLTSDLTVKVGDYGIGPS  148 (268)
T ss_pred             HHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHCCeeccCCccceEEEcCCccEEecccccccc
Confidence            999987542  1235667788899999999999987        56899999999999999999864

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=99.86  E-value=4.8e-21  Score=158.45  Aligned_cols=129  Identities=20%  Similarity=0.313  Sum_probs=112.5

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc-------------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK-------------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRM  159 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~-------------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~  159 (243)
                      ++|...+.||+|+||.||+|+.+...                   ...+.+.+|+++|++++|+||+++++++.+.+..|
T Consensus         5 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   84 (275)
T cd05046           5 SNLQEITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKDENLQSEFRRELDMFRKLSHKNVVRLLGLCREAEPHY   84 (275)
T ss_pred             HhceeeeeecccceeEEEEEEeccCCcCCCcceEEEEccCCccchHHHHHHHHHHHHHHhcCCcceeeeEEEECCCCcce
Confidence            57888999999999999999864321                   13467899999999999999999999999999999


Q ss_pred             EEEeccCCCCHHHHhccCCC-------CCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCc
Q 039406          160 LVYEFVLNNTLVFHLHGKGQ-------PTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLA  224 (243)
Q Consensus       160 lv~e~~~~g~L~~~l~~~~~-------~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a  224 (243)
                      +||||+++++|.+++.....       ..+++..++.++.|++.+|.|||.        +++|||++.++.+||+|||++
T Consensus        85 lv~e~~~~~~L~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH~~~i~H~dlkp~Nili~~~~~~~l~~~~~~  164 (275)
T cd05046          85 MILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIALGMDHLSNARFVHRDLAARNCLVSSQREVKVSLLSLS  164 (275)
T ss_pred             EEEEecCCCcHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHhhhcCcccCcCccceEEEeCCCcEEEcccccc
Confidence            99999999999999875441       148999999999999999999987        568999999999999999998


Q ss_pred             eec
Q 039406          225 KIA  227 (243)
Q Consensus       225 ~~~  227 (243)
                      +..
T Consensus       165 ~~~  167 (275)
T cd05046         165 KDV  167 (275)
T ss_pred             ccc
Confidence            754

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.86  E-value=5.6e-23  Score=161.65  Aligned_cols=142  Identities=24%  Similarity=0.291  Sum_probs=118.4

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCch---------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEE
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGKE---------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVY  162 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~---------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  162 (243)
                      .+.|++.+.||+|.|+.|++|....+..               .-+.+.+|+.|-+.|+|||||++.+.+......|||+
T Consensus        10 ~d~y~l~e~igkG~FSvVrRc~~~~tg~~fa~kiin~~k~~~~~~e~l~rEarIC~~LqHP~IvrL~~ti~~~~~~ylvF   89 (355)
T KOG0033|consen   10 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVF   89 (355)
T ss_pred             chhhhHHHHHccCchHHHHHHHhccchHHHHHHHhhhhhhccccHHHHHHHHHHHHhcCCCcEeehhhhhcccceeEEEE
Confidence            4678888999999999999997665432               4567889999999999999999999999999999999


Q ss_pred             eccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECC---CCcEEEeccCCceecCCCC
Q 039406          163 EFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDF---KFEAKVADFGLAKIASDVN  231 (243)
Q Consensus       163 e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~---~~~~kl~DFG~a~~~~~~~  231 (243)
                      |+|+|++|..-|..+.  .+++..+..++.||+.+|.|||.        +|.|+|+..   .--+||+|||+|..+.+ .
T Consensus        90 e~m~G~dl~~eIV~R~--~ySEa~aSH~~rQiLeal~yCH~n~IvHRDvkP~nllLASK~~~A~vKL~~FGvAi~l~~-g  166 (355)
T KOG0033|consen   90 DLVTGGELFEDIVARE--FYSEADASHCIQQILEALAYCHSNGIVHRDLKPENLLLASKAKGAAVKLADFGLAIEVND-G  166 (355)
T ss_pred             ecccchHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhcCceeccCChhheeeeeccCCCceeecccceEEEeCC-c
Confidence            9999999976655442  47888999999999999999976        579999943   34799999999999883 2


Q ss_pred             ceeeeccccccC
Q 039406          232 THVSTRVMGTFG  243 (243)
Q Consensus       232 ~~~~~~~~GT~G  243 (243)
                      . .....+||||
T Consensus       167 ~-~~~G~~GtP~  177 (355)
T KOG0033|consen  167 E-AWHGFAGTPG  177 (355)
T ss_pred             c-ccccccCCCc
Confidence            2 2334788886

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=99.86  E-value=6.9e-21  Score=158.18  Aligned_cols=125  Identities=19%  Similarity=0.288  Sum_probs=108.3

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc--------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEec
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK--------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEF  164 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~--------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  164 (243)
                      ++|+..+.||+|+||.||+|++..+.              .....+.+|+.+|++++|+||+++++++...+..++||||
T Consensus         1 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   80 (279)
T cd06619           1 QDIQYQEILGHGNGGTVYKAYHLLTRRILAVKVIPLDITVELQKQIMSELEILYKCDSPYIIGFYGAFFVENRISICTEF   80 (279)
T ss_pred             CcchheeeeccCCCeEEEEEEEcCCCcEEEEEEEecCCChHHHHHHHHHHHHHHhCCCCCeeeEEEEEEECCEEEEEEec
Confidence            36788899999999999999764332              2345688999999999999999999999999999999999


Q ss_pred             cCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          165 VLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       165 ~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      +++++|..+.      .+++..+..++.|++.||.|||.        +++|||++.++.+||+|||++..+..
T Consensus        81 ~~~~~l~~~~------~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nill~~~~~~~l~dfg~~~~~~~  147 (279)
T cd06619          81 MDGGSLDVYR------KIPEHVLGRIAVAVVKGLTYLWSLKILHRDVKPSNMLVNTRGQVKLCDFGVSTQLVN  147 (279)
T ss_pred             CCCCChHHhh------cCCHHHHHHHHHHHHHHHHHHHHCCEeeCCCCHHHEEECCCCCEEEeeCCcceeccc
Confidence            9999997543      36788889999999999999987        45899999999999999999987643

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=99.86  E-value=4.6e-21  Score=160.94  Aligned_cols=128  Identities=23%  Similarity=0.333  Sum_probs=110.9

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch--------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEec
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE--------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEF  164 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~--------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  164 (243)
                      ++|...+.||+|+||.||+|+...+..              ....+.+|+.++++++|+||+++++++...+..|+||||
T Consensus         6 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~nI~~~~~~~~~~~~~~lv~e~   85 (301)
T cd07873           6 ETYIKLDKLGEGTYATVYKGRSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEY   85 (301)
T ss_pred             cceEEeeEeccCcCEEEEEEEEcCCCcEEEEEEEecccccCchhHHHHHHHHHHhcCCCCcceEEEEEecCCeEEEEEec
Confidence            679999999999999999997654321              234677899999999999999999999999999999999


Q ss_pred             cCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          165 VLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       165 ~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      +. ++|.+++..... .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++...
T Consensus        86 ~~-~~l~~~l~~~~~-~~~~~~~~~~~~qi~~aL~~lH~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~  155 (301)
T cd07873          86 LD-KDLKQYLDDCGN-SINMHNVKLFLFQLLRGLNYCHRRKVLHRDLKPQNLLINERGELKLADFGLARAKS  155 (301)
T ss_pred             cc-cCHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCHHHEEECCCCcEEECcCcchhccC
Confidence            97 589888865433 48899999999999999999987        4589999999999999999998654

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=99.86  E-value=5.8e-21  Score=157.23  Aligned_cols=131  Identities=15%  Similarity=0.219  Sum_probs=112.8

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc----------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK----------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVY  162 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~----------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  162 (243)
                      ++|.+.+.||+|+||.||+|+...+.                +....+.+|+++|++++|+||+++++++.+.+..++||
T Consensus         2 ~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   81 (267)
T cd08228           2 ANFQIEKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHPNVIKYLDSFIEDNELNIVL   81 (267)
T ss_pred             cceeeeeeeccCCCeeEEEEEEeCCCCEEEEEEeeccccCCHHHHHHHHHHHHHHHhCCCcceeeeeeeEEECCeEEEEE
Confidence            67999999999999999999764332                23456788999999999999999999999999999999


Q ss_pred             eccCCCCHHHHhccC--CCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          163 EFVLNNTLVFHLHGK--GQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       163 e~~~~g~L~~~l~~~--~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      ||+++++|.+++...  ....+++..+..++.+++.||.|||.        +++|||++.++.++|+|||++..+..
T Consensus        82 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~~~nil~~~~~~~~l~d~g~~~~~~~  158 (267)
T cd08228          82 ELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSS  158 (267)
T ss_pred             EecCCCcHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHhhCCeeCCCCCHHHEEEcCCCCEEECccccceeccc
Confidence            999999999887532  22347888999999999999999987        45899999999999999999987653

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=99.86  E-value=4.9e-21  Score=160.50  Aligned_cols=129  Identities=22%  Similarity=0.446  Sum_probs=110.8

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc----------------hhHHHHHHHHHHHHhc-CCCccceEEEEEEeCCeeEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK----------------EGEREFQAEVEIISRV-HHKHLVSLVGYYTAGSQRMLV  161 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~----------------~~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~~~lv  161 (243)
                      ++|.+.+.||+|+||.||+|+.+.+.                ...+.+.+|+.++.++ +|+||+++++++...+.+|+|
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv   81 (297)
T cd05089           2 EDIKFEDVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASENDHRDFAGELEVLCKLGHHPNIINLLGACENRGYLYIA   81 (297)
T ss_pred             ccceeeeeecCCCcceEEEEEecCCCCcceeEEEEccccCCHHHHHHHHHHHHHHHhhcCCCchhheEEEEccCCcceEE
Confidence            57889999999999999999765432                1235688899999999 799999999999999999999


Q ss_pred             EeccCCCCHHHHhccCC--------------CCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEe
Q 039406          162 YEFVLNNTLVFHLHGKG--------------QPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVA  219 (243)
Q Consensus       162 ~e~~~~g~L~~~l~~~~--------------~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~  219 (243)
                      |||+++++|.+++....              ...+++..++.++.|++.||.|||.        +++|||++.++.+||+
T Consensus        82 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~lH~~~ivH~dlkp~Nill~~~~~~kl~  161 (297)
T cd05089          82 IEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFASDVATGMQYLSEKQFIHRDLAARNVLVGENLASKIA  161 (297)
T ss_pred             EEecCCCcHHHHHHhccccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHHHCCcccCcCCcceEEECCCCeEEEC
Confidence            99999999999986532              1247888999999999999999987        5699999999999999


Q ss_pred             ccCCceec
Q 039406          220 DFGLAKIA  227 (243)
Q Consensus       220 DFG~a~~~  227 (243)
                      |||++...
T Consensus       162 dfg~~~~~  169 (297)
T cd05089         162 DFGLSRGE  169 (297)
T ss_pred             CcCCCccc
Confidence            99998643

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=99.86  E-value=5e-21  Score=160.34  Aligned_cols=130  Identities=24%  Similarity=0.376  Sum_probs=110.9

Q ss_pred             CCCCccceeeecCceEEEEEEecC------------------------------CchhHHHHHHHHHHHHhcCCCccceE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPN------------------------------GKEGEREFQAEVEIISRVHHKHLVSL  148 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~------------------------------~~~~~~~~~~E~~~l~~l~hp~iv~~  148 (243)
                      ++|++.+.||+|+||.||++....                              .......+.+|+.+|++++|+||+++
T Consensus         5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~   84 (296)
T cd05095           5 KRLTFKEKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDANKNARNDFLKEIKIMSRLKDPNIIRL   84 (296)
T ss_pred             hhceeeeeccCCCCCeEEecccccccccccccccccCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceE
Confidence            568999999999999999874321                              11234678899999999999999999


Q ss_pred             EEEEEeCCeeEEEEeccCCCCHHHHhccCCC---------CCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEEC
Q 039406          149 VGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQ---------PTMDWPTRIKIALGSAKGLAYLHD--------DLANILLD  211 (243)
Q Consensus       149 ~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~---------~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~  211 (243)
                      ++++...+..|+||||+.+++|.+++.....         ..+++..+..++.|++.||.|||.        +|+|||++
T Consensus        85 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~H~dlkp~Nili~  164 (296)
T cd05095          85 LAVCITSDPLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMATQIASGMKYLSSLNFVHRDLATRNCLVG  164 (296)
T ss_pred             EEEEecCCccEEEEEeCCCCcHHHHHHhcCcccccccccccccCHHHHHHHHHHHHHHHHHHHHCCeecccCChheEEEc
Confidence            9999999999999999999999999865321         236778899999999999999987        56999999


Q ss_pred             CCCcEEEeccCCceecC
Q 039406          212 FKFEAKVADFGLAKIAS  228 (243)
Q Consensus       212 ~~~~~kl~DFG~a~~~~  228 (243)
                      .++.+||+|||+++.+.
T Consensus       165 ~~~~~~l~dfg~~~~~~  181 (296)
T cd05095         165 KNYTIKIADFGMSRNLY  181 (296)
T ss_pred             CCCCEEeccCccccccc
Confidence            99999999999998653

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=99.86  E-value=6.6e-21  Score=158.37  Aligned_cols=127  Identities=20%  Similarity=0.330  Sum_probs=110.4

Q ss_pred             CCccceeeecCceEEEEEEecCCc-------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccCC
Q 039406          101 FSDANLLRQDGFGYVHRGVLPNGK-------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLN  167 (243)
Q Consensus       101 ~~~~~~lg~G~~g~V~~~~~~~~~-------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~  167 (243)
                      |++.+.||+|+||.||++....+.             ...+.+.+|+++++.++|+||+++++++...+..|+||||+.+
T Consensus         7 ~~i~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~~v~e~~~~   86 (282)
T cd06643           7 WEIIGELGDGAFGKVYKAQNKETGVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFCAG   86 (282)
T ss_pred             HHHHhhcccCCCeEEEEEEECCCCeEEEEEEeCCCCHHHHHHHHHHHHHHHHCCCCCeeeEEEEEeeCCEEEEEEEecCC
Confidence            566788999999999999765432             2356788899999999999999999999999999999999999


Q ss_pred             CCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          168 NTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       168 g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      ++|..++..... .+++..+..++.|++.+|.|||.        +++|||++.++.+||+|||++....
T Consensus        87 ~~l~~~~~~~~~-~l~~~~~~~~~~qi~~~L~~LH~~~i~H~dlkp~nili~~~~~~kl~dfg~~~~~~  154 (282)
T cd06643          87 GAVDAVMLELER-PLTEPQIRVVCKQTLEALNYLHENKIIHRDLKAGNILFTLDGDIKLADFGVSAKNT  154 (282)
T ss_pred             CcHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCcccEEEccCCCEEEcccccccccc
Confidence            999888764332 58999999999999999999987        5689999999999999999997654

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=99.86  E-value=3.5e-21  Score=160.66  Aligned_cols=132  Identities=24%  Similarity=0.377  Sum_probs=110.7

Q ss_pred             HhCCCCccceeeecCceEEEEEEecCC-------------------chhHHHHHHHHHHHHhcCCCccceEEEEEEeCCe
Q 039406           97 ATDGFSDANLLRQDGFGYVHRGVLPNG-------------------KEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQ  157 (243)
Q Consensus        97 ~~~~~~~~~~lg~G~~g~V~~~~~~~~-------------------~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~  157 (243)
                      ..++|.+.+.||+|+||.||+|..+..                   ......+.+|+.+++.++|+||+++++++...+.
T Consensus         4 ~~~~~~i~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~   83 (288)
T cd05061           4 SREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVRLLGVVSKGQP   83 (288)
T ss_pred             cHHHceeeeeecCCCCcEEEEEEEeccCCCCcceEEEEEECCCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCC
Confidence            347899999999999999999864321                   0123457889999999999999999999999999


Q ss_pred             eEEEEeccCCCCHHHHhccCC--------CCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEecc
Q 039406          158 RMLVYEFVLNNTLVFHLHGKG--------QPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADF  221 (243)
Q Consensus       158 ~~lv~e~~~~g~L~~~l~~~~--------~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DF  221 (243)
                      .|+||||+.+|+|.+++....        ...+.+..++.++.|++.||.|||.        +++|||++.++.+||+||
T Consensus        84 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dikp~nili~~~~~~~L~Df  163 (288)
T cd05061          84 TLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLNAKKFVHRDLAARNCMVAHDFTVKIGDF  163 (288)
T ss_pred             cEEEEeCCCCCCHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcCCCCChheEEEcCCCcEEECcC
Confidence            999999999999999996432        1234667888999999999999987        568999999999999999


Q ss_pred             CCceecC
Q 039406          222 GLAKIAS  228 (243)
Q Consensus       222 G~a~~~~  228 (243)
                      |+++.+.
T Consensus       164 g~~~~~~  170 (288)
T cd05061         164 GMTRDIY  170 (288)
T ss_pred             Ccccccc
Confidence            9998653

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=99.86  E-value=5.9e-21  Score=160.55  Aligned_cols=132  Identities=24%  Similarity=0.376  Sum_probs=113.6

Q ss_pred             hCCCCccceeeecCceEEEEEEecCC-------------------chhHHHHHHHHHHHHhc-CCCccceEEEEEEeCCe
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNG-------------------KEGEREFQAEVEIISRV-HHKHLVSLVGYYTAGSQ  157 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~-------------------~~~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~  157 (243)
                      .++|.+.+.||+|+||.||++.....                   ....+.+.+|+.+++++ +|+||+++++++...+.
T Consensus        34 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~  113 (302)
T cd05055          34 RNNLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHSSEREALMSELKIMSHLGNHENIVNLLGACTIGGP  113 (302)
T ss_pred             HHHeEEcceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccCChHHHHHHHHHHHHHHhccCCCCcceEEEEEecCCc
Confidence            36799999999999999999864210                   11245688999999999 79999999999999999


Q ss_pred             eEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          158 RMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       158 ~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      .|+||||+.+++|.+++.......+++..++.++.+++.||.|||.        +++|||++.++.+||+|||+++.+..
T Consensus       114 ~~lv~e~~~~~~L~~~i~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~~l~dfg~~~~~~~  193 (302)
T cd05055         114 ILVITEYCCYGDLLNFLRRKRESFLTLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNVLLTHGKIVKICDFGLARDIMN  193 (302)
T ss_pred             eEEEEEcCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeehhhhccceEEEcCCCeEEECCCcccccccC
Confidence            9999999999999999976444348999999999999999999987        56999999999999999999987644

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=99.86  E-value=7.6e-21  Score=157.94  Aligned_cols=130  Identities=18%  Similarity=0.275  Sum_probs=112.6

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch---------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEe
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE---------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYE  163 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~---------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e  163 (243)
                      ++|+..+.||+|+||.||+++.+.+.+               ..+.+.+|+.++++++|+||+++++++......++|||
T Consensus         1 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~e   80 (286)
T cd07847           1 EKYEKLSKIGEGSYGVVFKCRNRETGQIVAIKKFVESEDDPVIKKIALREIRMLKQLKHPNLVNLIEVFRRKRKLHLVFE   80 (286)
T ss_pred             CceeeeeeecccCCeEEEEEEECCCCcEEEEEEEeecccCccccHHHHHHHHHHHhCCCCCEeeeeeEEeeCCEEEEEEe
Confidence            468889999999999999998764321               23557889999999999999999999999999999999


Q ss_pred             ccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          164 FVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       164 ~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      |++++.|..++....  .+++..++.++.|++.+|.|||.        +++||+++.++.+||+|||++..+...
T Consensus        81 ~~~~~~l~~~~~~~~--~~~~~~~~~~~~ql~~~l~~LH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~  153 (286)
T cd07847          81 YCDHTVLNELEKNPR--GVPEHLIKKIIWQTLQAVNFCHKHNCIHRDVKPENILITKQGQIKLCDFGFARILTGP  153 (286)
T ss_pred             ccCccHHHHHHhCCC--CCCHHHHHHHHHHHHHHHHHHHHCCceecCCChhhEEEcCCCcEEECccccceecCCC
Confidence            999988887765433  48999999999999999999987        468999999999999999999877543

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=99.86  E-value=6.8e-21  Score=160.25  Aligned_cols=126  Identities=21%  Similarity=0.291  Sum_probs=111.1

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc----------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK----------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVY  162 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~----------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  162 (243)
                      ++|...+.||+|+||.||++......                .....+.+|+.+++.++|+||+++++.+..++.+|+||
T Consensus         1 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (305)
T cd05609           1 EDFETIKLISNGAYGAVYLVRHKETRQRFAMKKINKQNLILRNQIQQVFVERDILTFAENPFVVSMFCSFETKRHLCMVM   80 (305)
T ss_pred             CCceEeeEeecCCCeeEEEEEECCCCcEEEEEEeehhhhhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEecCCEEEEEE
Confidence            47889999999999999999765542                12456778999999999999999999999999999999


Q ss_pred             eccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCcee
Q 039406          163 EFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKI  226 (243)
Q Consensus       163 e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~  226 (243)
                      ||+++++|.+++...+  .+++..+..++.+++.||.|||.        +++|||++.++.+||+|||+++.
T Consensus        81 e~~~g~~L~~~l~~~~--~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~NIll~~~~~~~l~dfg~~~~  150 (305)
T cd05609          81 EYVEGGDCATLLKNIG--ALPVDMARMYFAETVLALEYLHNYGIVHRDLKPDNLLITSMGHIKLTDFGLSKI  150 (305)
T ss_pred             ecCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCccccCCchHHEEECCCCCEEEeeCCCccc
Confidence            9999999999996554  48899999999999999999987        45899999999999999999874

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=99.86  E-value=6.8e-21  Score=158.05  Aligned_cols=129  Identities=25%  Similarity=0.391  Sum_probs=112.1

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc------------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK------------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRML  160 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~------------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~l  160 (243)
                      ++|.+.+.||+|+||.||+|.++.+.                  .....+.+|+.+|++++|+||+++++++.. ...++
T Consensus         7 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~~   85 (279)
T cd05057           7 TELEKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILDEAYVMASVDHPHVVRLLGICLS-SQVQL   85 (279)
T ss_pred             HHcEEcceecCCCCccEEEEEEecCCCCcceEEEEEeccCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEec-CceEE
Confidence            57888899999999999999754321                  134678899999999999999999999887 78999


Q ss_pred             EEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          161 VYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       161 v~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      ||||+.+|+|.+++..... .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++.+..
T Consensus        86 v~e~~~~g~L~~~l~~~~~-~~~~~~~~~~~~qi~~~l~~LH~~~i~H~di~p~nil~~~~~~~kL~dfg~~~~~~~  161 (279)
T cd05057          86 ITQLMPLGCLLDYVRNHKD-NIGSQYLLNWCVQIAKGMSYLEEKRLVHRDLAARNVLVKTPQHVKITDFGLAKLLDV  161 (279)
T ss_pred             EEecCCCCcHHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHHhCCEEecccCcceEEEcCCCeEEECCCcccccccC
Confidence            9999999999999876543 48999999999999999999987        56899999999999999999987653

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=99.86  E-value=4.3e-21  Score=158.81  Aligned_cols=131  Identities=23%  Similarity=0.348  Sum_probs=112.2

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCc-------------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCee
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGK-------------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQR  158 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~-------------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~  158 (243)
                      .++|.+.+.||+|+||.||++..+...                   .....+.+|+.+|+.++|+||+++++++......
T Consensus         5 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~   84 (277)
T cd05032           5 REKITLIRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEASVMKEFNCHHVVRLLGVVSTGQPT   84 (277)
T ss_pred             hHHeeEEeEecCCCCceEEEEEEeccCCCCcceeEEEEecCCccCHHHHHHHHHHHHHHHhCCCCceeEEEEEEcCCCCc
Confidence            367889999999999999998765321                   1245678999999999999999999999999999


Q ss_pred             EEEEeccCCCCHHHHhccCC--------CCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccC
Q 039406          159 MLVYEFVLNNTLVFHLHGKG--------QPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFG  222 (243)
Q Consensus       159 ~lv~e~~~~g~L~~~l~~~~--------~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG  222 (243)
                      |+||||+.+++|.+++....        ...+.+..++.++.|++.||.|||.        +++|||++.++.+||+|||
T Consensus        85 ~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~di~p~nill~~~~~~kl~dfg  164 (277)
T cd05032          85 LVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMAYLAAKKFVHRDLAARNCMVAEDLTVKIGDFG  164 (277)
T ss_pred             EEEEecCCCCCHHHHHHhcccchhhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCccccccChheEEEcCCCCEEECCcc
Confidence            99999999999999986432        1236788999999999999999987        4689999999999999999


Q ss_pred             CceecC
Q 039406          223 LAKIAS  228 (243)
Q Consensus       223 ~a~~~~  228 (243)
                      +++.+.
T Consensus       165 ~~~~~~  170 (277)
T cd05032         165 MTRDIY  170 (277)
T ss_pred             cchhhc
Confidence            998654

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=99.86  E-value=9.6e-21  Score=155.58  Aligned_cols=131  Identities=25%  Similarity=0.395  Sum_probs=113.2

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCc-----------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccC
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGK-----------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVL  166 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~-----------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~  166 (243)
                      .++|.+.+.||+|+||.||++.+....           ...+.+.+|+.+|++++|+||+++++++.. ...+++|||+.
T Consensus         5 ~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~iK~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-~~~~~v~e~~~   83 (260)
T cd05073           5 RESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGSMSVEAFLAEANVMKTLQHDKLVKLHAVVTK-EPIYIITEFMA   83 (260)
T ss_pred             ccceeEEeEecCccceEEEEEEecCCccEEEEecCCChhHHHHHHHHHHHHHhcCCCCcceEEEEEcC-CCeEEEEEeCC
Confidence            467899999999999999999754321           134678899999999999999999999887 77899999999


Q ss_pred             CCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          167 NNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       167 ~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      +++|.+++.......+++..++.++.+++.+|.|||.        +++||+++.++.+||+|||++..+..
T Consensus        84 ~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~~~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~  154 (260)
T cd05073          84 KGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRDLRAANILVSASLVCKIADFGLARVIED  154 (260)
T ss_pred             CCcHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHhCCccccccCcceEEEcCCCcEEECCCcceeeccC
Confidence            9999999976544457888999999999999999987        46899999999999999999987654

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=99.86  E-value=6e-21  Score=157.50  Aligned_cols=130  Identities=27%  Similarity=0.424  Sum_probs=113.0

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc-----------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK-----------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLV  161 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~-----------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv  161 (243)
                      .+|.+.+.||+|+||.||+|.+..+.                 ...+.|.+|+.++++++|+||+++++++..++..++|
T Consensus         4 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~lv   83 (269)
T cd05065           4 SCVKIEEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSRPVMII   83 (269)
T ss_pred             HHeEEEeEecCCCCCeEEEEEEecCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCcCcceEEEEECCCCceEEE
Confidence            45788899999999999999765321                 1346788999999999999999999999999999999


Q ss_pred             EeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          162 YEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       162 ~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      |||+.+++|.+++..... .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++.+..
T Consensus        84 ~e~~~~~~L~~~l~~~~~-~~~~~~~~~i~~~l~~al~~lH~~g~~H~dl~p~nili~~~~~~kl~dfg~~~~~~~  158 (269)
T cd05065          84 TEFMENGALDSFLRQNDG-QFTVIQLVGMLRGIAAGMKYLSEMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLED  158 (269)
T ss_pred             EecCCCCcHHHHHhhCCC-CCCHHHHHHHHHHHHHHHHHHHHCCEeecccChheEEEcCCCcEEECCCcccccccc
Confidence            999999999999875443 48999999999999999999987        46899999999999999999987643

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=99.86  E-value=8.3e-21  Score=155.54  Aligned_cols=130  Identities=27%  Similarity=0.406  Sum_probs=112.1

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc---------hhHHHHHHHHHHHHhcCCCccceEEEEEE-eCCeeEEEEeccCCC
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK---------EGEREFQAEVEIISRVHHKHLVSLVGYYT-AGSQRMLVYEFVLNN  168 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~---------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~-~~~~~~lv~e~~~~g  168 (243)
                      ++|.+.+.||+|+||.||++......         ...+.+.+|+.++++++|+||+++++++. .++..|+||||++++
T Consensus         6 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~k~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~e~~~~~   85 (256)
T cd05082           6 KELKLLQTIGKGEFGDVMLGDYRGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKG   85 (256)
T ss_pred             HhCeeeeeecccCCCeEEEEEEcCCcEEEEEeCCCchHHHHHHHHHHHHhCCCCCeeeEEEEEEcCCCceEEEEECCCCC
Confidence            57888999999999999998654322         24567889999999999999999999754 556799999999999


Q ss_pred             CHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          169 TLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       169 ~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      +|.+++.......+++..++.++.+++.+|.|||.        +++|||++.++.+||+|||+++...
T Consensus        86 ~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~  153 (256)
T cd05082          86 SLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEANNFVHRDLAARNVLVSEDNVAKVSDFGLTKEAS  153 (256)
T ss_pred             cHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCEeccccchheEEEcCCCcEEecCCccceecc
Confidence            99999976555458899999999999999999987        5689999999999999999998754

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=99.86  E-value=4.8e-21  Score=161.32  Aligned_cols=130  Identities=22%  Similarity=0.345  Sum_probs=111.4

Q ss_pred             CCCCccceeeecCceEEEEEEecC---------------------CchhHHHHHHHHHHHHhc-CCCccceEEEEEEeCC
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPN---------------------GKEGEREFQAEVEIISRV-HHKHLVSLVGYYTAGS  156 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~---------------------~~~~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~  156 (243)
                      ++|.+.+.||+|+||.||++....                     .......+.+|+.+++++ +|+||+++++++...+
T Consensus        18 ~~~~i~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~   97 (307)
T cd05098          18 DRLVLGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDG   97 (307)
T ss_pred             HHeEEeeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCCChHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCC
Confidence            679999999999999999886421                     012345678899999999 7999999999999999


Q ss_pred             eeEEEEeccCCCCHHHHhccCCC--------------CCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCC
Q 039406          157 QRMLVYEFVLNNTLVFHLHGKGQ--------------PTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKF  214 (243)
Q Consensus       157 ~~~lv~e~~~~g~L~~~l~~~~~--------------~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~  214 (243)
                      ..|+||||+.+++|.+++.....              ..+++..++.++.|++.||.|||.        +++|||++.++
T Consensus        98 ~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~gi~H~dlkp~Nill~~~~  177 (307)
T cd05098          98 PLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDN  177 (307)
T ss_pred             ceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHCCcccccccHHheEEcCCC
Confidence            99999999999999999975421              247889999999999999999987        46899999999


Q ss_pred             cEEEeccCCceecC
Q 039406          215 EAKVADFGLAKIAS  228 (243)
Q Consensus       215 ~~kl~DFG~a~~~~  228 (243)
                      .+||+|||+++.+.
T Consensus       178 ~~kL~dfg~a~~~~  191 (307)
T cd05098         178 VMKIADFGLARDIH  191 (307)
T ss_pred             cEEECCCccccccc
Confidence            99999999998654

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=99.86  E-value=4.7e-21  Score=157.79  Aligned_cols=131  Identities=15%  Similarity=0.207  Sum_probs=112.7

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc----------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK----------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVY  162 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~----------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  162 (243)
                      ++|.+.+.||+|+||.||++....+.                .....+.+|+.+++.++|+||+++++++..++..+++|
T Consensus         2 ~~y~~~~~ig~g~~g~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~   81 (267)
T cd08229           2 ANFRIEKKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVL   81 (267)
T ss_pred             chhhhhhhhcccCCeEEEEEeecCCCceEEEEeeeehhhhhHHHHHHHHHHHHHHHHccCCchhhhhheeEeCCeEEEEE
Confidence            57888899999999999999854332                13457788999999999999999999999999999999


Q ss_pred             eccCCCCHHHHhccC--CCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          163 EFVLNNTLVFHLHGK--GQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       163 e~~~~g~L~~~l~~~--~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      ||+.+++|.+++...  ....+++..++.++.+++.+|.|||.        +++||+++.++.+||+|||++..+..
T Consensus        82 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~  158 (267)
T cd08229          82 ELADAGDLSRMIKHFKKQKRLIPEKTVWKYFVQLCSALEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSS  158 (267)
T ss_pred             EecCCCCHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCCEEECcchhhhcccc
Confidence            999999999988631  22358899999999999999999987        45899999999999999999887644

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=99.86  E-value=8.1e-21  Score=157.81  Aligned_cols=128  Identities=22%  Similarity=0.298  Sum_probs=109.9

Q ss_pred             CCCccceeeecCceEEEEEEecCCch---------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEec
Q 039406          100 GFSDANLLRQDGFGYVHRGVLPNGKE---------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEF  164 (243)
Q Consensus       100 ~~~~~~~lg~G~~g~V~~~~~~~~~~---------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  164 (243)
                      +|.+.+.||+|+||.||+|+...+..               ..+.+.+|+.++++++|+||+++++++.+++.+|+||||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~   80 (285)
T cd07861           1 DYTKIEKIGEGTYGVVYKGRNKKTGQIVAMKKIRLESEEEGVPSTAIREISLLKELQHPNIVCLQDVLMQESRLYLIFEF   80 (285)
T ss_pred             CceEeeEecccCceEEEEEEECCCCcEEEEEEeccccccCCchHHHHHHHHHHHhcCCCCEeeeEEEEeeCCeEEEEEec
Confidence            47888999999999999998654321               235678899999999999999999999999999999999


Q ss_pred             cCCCCHHHHhccCC-CCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          165 VLNNTLVFHLHGKG-QPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       165 ~~~g~L~~~l~~~~-~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      +. ++|.+++.... ...+++..++.++.|++.||.|||.        +++|||++.++.+||+|||++....
T Consensus        81 ~~-~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~  152 (285)
T cd07861          81 LS-MDLKKYLDSLPKGQYMDAELVKSYLYQILQGILFCHSRRVLHRDLKPQNLLIDNKGVIKLADFGLARAFG  152 (285)
T ss_pred             CC-CCHHHHHhcCCCCCcCCHHHHHHHHHHHHHHHHHHHhCCeeecCCCHHHEEEcCCCcEEECcccceeecC
Confidence            97 58888876433 2458999999999999999999987        4589999999999999999998654

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=99.86  E-value=8.1e-21  Score=156.55  Aligned_cols=130  Identities=27%  Similarity=0.457  Sum_probs=113.2

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc-----------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK-----------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLV  161 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~-----------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv  161 (243)
                      ++|...+.||+|+||.||+++.....                 ...+.+.+|++++++++|+||+++++++...+..|+|
T Consensus         5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   84 (268)
T cd05063           5 SHITKQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFLSEASIMGQFSHHNIIRLEGVVTKFKPAMII   84 (268)
T ss_pred             HHceEeeEecCCCCccEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCCCeeEEEEEEccCCCcEEE
Confidence            57888899999999999999865321                 1345688899999999999999999999999999999


Q ss_pred             EeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          162 YEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       162 ~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      |||+.+++|.+++..... .+++..+..++.+++.||.|||.        +++|||++.++.+||+|||++.....
T Consensus        85 ~e~~~~~~L~~~~~~~~~-~~~~~~~~~~~~~l~~al~~lH~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~  159 (268)
T cd05063          85 TEYMENGALDKYLRDHDG-EFSSYQLVGMLRGIAAGMKYLSDMNYVHRDLAARNILVNSNLECKVSDFGLSRVLED  159 (268)
T ss_pred             EEcCCCCCHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHHHCCeeccccchhhEEEcCCCcEEECCCccceeccc
Confidence            999999999999875432 48999999999999999999987        56899999999999999999987643

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=99.86  E-value=9.1e-21  Score=159.02  Aligned_cols=128  Identities=18%  Similarity=0.262  Sum_probs=112.5

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc-------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEecc
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK-------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFV  165 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~-------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~  165 (243)
                      ++|...+.||+|+||.||+++...+.             ...+.+.+|+.+++.++|+||+++++++...+..|+||||+
T Consensus        19 ~~y~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~   98 (297)
T cd06656          19 KKYTRFEKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYL   98 (297)
T ss_pred             hhceeeeeeccCCCeEEEEEEECCCCCEEEEEEEecCccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCEEEEeeccc
Confidence            67999999999999999999864322             13466788999999999999999999999999999999999


Q ss_pred             CCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          166 LNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       166 ~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      ++++|.+++...   .+++..+..++.+++.+|.|||.        +++|||++.++.+||+|||++.....
T Consensus        99 ~~~~L~~~~~~~---~~~~~~~~~~~~~l~~~L~~LH~~~i~H~dL~p~Nili~~~~~~~l~Dfg~~~~~~~  167 (297)
T cd06656          99 AGGSLTDVVTET---CMDEGQIAAVCRECLQALDFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITP  167 (297)
T ss_pred             CCCCHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEECcCccceEccC
Confidence            999999998643   47888999999999999999986        45899999999999999999987643

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.86  E-value=1.2e-20  Score=156.97  Aligned_cols=130  Identities=25%  Similarity=0.360  Sum_probs=110.1

Q ss_pred             CCCCccceeeecCceEEEEEEecC----C-------------chhHHHHHHHHHHHHhcCCCccceEEEEEEe--CCeeE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPN----G-------------KEGEREFQAEVEIISRVHHKHLVSLVGYYTA--GSQRM  159 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~----~-------------~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~--~~~~~  159 (243)
                      .+|.+.+.||+|+||.||++....    .             ....+.+.+|+++|++++|+||+++++++..  ...++
T Consensus         4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~   83 (284)
T cd05081           4 RHLKFIQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHSTAEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLR   83 (284)
T ss_pred             ccceeeeeccCCCCceEEEEEecCCcCCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEccCCCCceE
Confidence            578889999999999999986431    1             1134578899999999999999999998753  34689


Q ss_pred             EEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          160 LVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       160 lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      +||||+.+++|.+++..... .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++.+..
T Consensus        84 lv~e~~~~~~L~~~l~~~~~-~l~~~~~~~~~~~l~~aL~~LH~~~i~H~dlkp~nili~~~~~~~l~dfg~~~~~~~  160 (284)
T cd05081          84 LVMEYLPYGSLRDYLQKHRE-RLDHRKLLLYASQICKGMEYLGSKRYVHRDLATRNILVESENRVKIGDFGLTKVLPQ  160 (284)
T ss_pred             EEEEecCCCCHHHHHHhcCc-CCCHHHHHHHHHHHHHHHHHHHHCCceeccCCHhhEEECCCCeEEECCCcccccccC
Confidence            99999999999999865433 48999999999999999999987        56899999999999999999997654

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=99.86  E-value=2.9e-21  Score=160.57  Aligned_cols=129  Identities=20%  Similarity=0.325  Sum_probs=112.2

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch---------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEe
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE---------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYE  163 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~---------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e  163 (243)
                      ++|+..+.||+|+||.||+|.+..+.+               ..+.+.+|+++|+.++|+||+++++++..++..|+|||
T Consensus         1 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   80 (286)
T cd07846           1 EKYENLGLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAMREIRMLKQLRHENLVNLIEVFRRKKRLYLVFE   80 (286)
T ss_pred             CceeEeeeeccCCCeEEEEEEECCCCCEEEEEeHhhccCcchhhHHHHHHHHHHHhcCCcchhhHHHhcccCCeEEEEEe
Confidence            468889999999999999998764321               23567889999999999999999999999999999999


Q ss_pred             ccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          164 FVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       164 ~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      |++++.|.++.....  .+++..++.++.|++.+|.|||.        +++||+++.++.+||+|||++..+..
T Consensus        81 ~~~~~~l~~~~~~~~--~~~~~~~~~~~~~i~~~l~~LH~~~i~h~~l~p~ni~~~~~~~~~l~dfg~~~~~~~  152 (286)
T cd07846          81 FVDHTVLDDLEKYPN--GLDESRVRKYLFQILRGIEFCHSHNIIHRDIKPENILVSQSGVVKLCDFGFARTLAA  152 (286)
T ss_pred             cCCccHHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEECCCCcEEEEeeeeeeeccC
Confidence            999999988775433  48999999999999999999987        45899999999999999999987644

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=99.86  E-value=3.3e-21  Score=180.29  Aligned_cols=135  Identities=19%  Similarity=0.264  Sum_probs=111.6

Q ss_pred             HHHhCCCCccceeeecCceEEEEEEecCCc---------------hhHHHHHHHHHHHHhcCCCccceEEEEEEe--CCe
Q 039406           95 ARATDGFSDANLLRQDGFGYVHRGVLPNGK---------------EGEREFQAEVEIISRVHHKHLVSLVGYYTA--GSQ  157 (243)
Q Consensus        95 ~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~---------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~--~~~  157 (243)
                      ....++|.+++.||+|+||.||++.+....               .....+..|+.+|++|+|+|||+++++|..  ...
T Consensus         9 e~~l~~YeIl~kLG~GgFGtVYLAkdk~tg~~vAlKvIk~~~l~e~~~~~~~~EI~IL~~L~HPNIVrl~d~f~de~~~~   88 (1021)
T PTZ00266          9 ESRLNEYEVIKKIGNGRFGEVFLVKHKRTQEFFCWKAISYRGLKEREKSQLVIEVNVMRELKHKNIVRYIDRFLNKANQK   88 (1021)
T ss_pred             ccccCCEEEEEEEecCCCeEEEEEEECCCCeEEEEEEEeccccCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEecCCCE
Confidence            344578999999999999999999865542               234668899999999999999999998864  456


Q ss_pred             eEEEEeccCCCCHHHHhccCC--CCCCCHHHHHHHHHHHHHhhhHhhc---------------CCCcEEECC--------
Q 039406          158 RMLVYEFVLNNTLVFHLHGKG--QPTMDWPTRIKIALGSAKGLAYLHD---------------DLANILLDF--------  212 (243)
Q Consensus       158 ~~lv~e~~~~g~L~~~l~~~~--~~~l~~~~~~~i~~~i~~~l~~lH~---------------~~~NiLl~~--------  212 (243)
                      +|||||||.+++|.++|....  ...+++..++.|+.||+.||.|||.               +|+||||+.        
T Consensus        89 lyIVMEY~~gGSL~~lL~k~~~~~g~L~E~~Il~Ia~QIL~ALaYLHs~g~~~~~k~IVHRDLKPeNILL~s~~~~lg~i  168 (1021)
T PTZ00266         89 LYILMEFCDAGDLSRNIQKCYKMFGKIEEHAIVDITRQLLHALAYCHNLKDGPNGERVLHRDLKPQNIFLSTGIRHIGKI  168 (1021)
T ss_pred             EEEEEeCCCCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCceeccCcHHHeEeecCccccccc
Confidence            999999999999999886421  2358999999999999999999995               358999964        


Q ss_pred             ---------CCcEEEeccCCceecCC
Q 039406          213 ---------KFEAKVADFGLAKIASD  229 (243)
Q Consensus       213 ---------~~~~kl~DFG~a~~~~~  229 (243)
                               .+.+||+|||+++.+..
T Consensus       169 ~~~~~n~ng~~iVKLsDFGlAr~l~~  194 (1021)
T PTZ00266        169 TAQANNLNGRPIAKIGDFGLSKNIGI  194 (1021)
T ss_pred             cccccccCCCCceEEccCCccccccc
Confidence                     23589999999987654

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=99.86  E-value=7.3e-21  Score=163.74  Aligned_cols=127  Identities=21%  Similarity=0.278  Sum_probs=106.4

Q ss_pred             HhCCCCccceeeecCceEEEEEEecCCc---------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCC-----
Q 039406           97 ATDGFSDANLLRQDGFGYVHRGVLPNGK---------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGS-----  156 (243)
Q Consensus        97 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~---------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-----  156 (243)
                      ..++|...+.||+|+||.||++....+.               .....+.+|+.+|+.++|+||+++++++...+     
T Consensus        19 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~   98 (359)
T cd07876          19 VLKRYQQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHAKRAYRELVLLKCVNHKNIISLLNVFTPQKSLEEF   98 (359)
T ss_pred             hhhceEEEEEeecCCCEEEEEEEEcCCCceeEEEEecccccchhHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCCcccc
Confidence            4588999999999999999999765432               13456788999999999999999999986543     


Q ss_pred             -eeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceec
Q 039406          157 -QRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIA  227 (243)
Q Consensus       157 -~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~  227 (243)
                       .+|+||||+.+ +|.+.+..    .+++..+..++.|++.||.|||.        +|+|||++.++.+||+|||+++..
T Consensus        99 ~~~~lv~e~~~~-~l~~~~~~----~~~~~~~~~~~~qi~~~L~~LH~~~ivHrDlkp~NIl~~~~~~~kl~Dfg~a~~~  173 (359)
T cd07876          99 QDVYLVMELMDA-NLCQVIHM----ELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTA  173 (359)
T ss_pred             ceeEEEEeCCCc-CHHHHHhc----cCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEEecCCCcccc
Confidence             57999999966 66666632    37888899999999999999987        468999999999999999999865


Q ss_pred             C
Q 039406          228 S  228 (243)
Q Consensus       228 ~  228 (243)
                      .
T Consensus       174 ~  174 (359)
T cd07876         174 C  174 (359)
T ss_pred             c
Confidence            4

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=99.85  E-value=1.3e-20  Score=154.99  Aligned_cols=131  Identities=15%  Similarity=0.226  Sum_probs=113.8

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc----------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK----------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVY  162 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~----------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  162 (243)
                      ++|.+.+.||+|+||.||+|....+.                ...+.+.+|++++++++|+||+++++++...+..++||
T Consensus         2 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~i~~~~~~~~~~~~~~lv~   81 (267)
T cd08224           2 GNFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLDHPNVIKYLASFIENNELNIVL   81 (267)
T ss_pred             CceeeeeeeccCCceEEEEEEEcCCCCEEEEEEeecccccchhhHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEEE
Confidence            67999999999999999999876321                13567889999999999999999999999999999999


Q ss_pred             eccCCCCHHHHhccC--CCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          163 EFVLNNTLVFHLHGK--GQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       163 e~~~~g~L~~~l~~~--~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      ||+.+++|.+++...  ....+++..++.++.+++.+|.|||.        +++||+++.++.++|+|||+++.+..
T Consensus        82 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~dl~p~nil~~~~~~~~l~d~~~~~~~~~  158 (267)
T cd08224          82 ELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSALEHMHSKRIMHRDIKPANVFITATGVVKLGDLGLGRFFSS  158 (267)
T ss_pred             ecCCCCCHHHHHHHhcccCCCcCHHHHHHHHHHHHHHHHHHHhCCEecCCcChhhEEECCCCcEEEeccceeeeccC
Confidence            999999999988542  23357899999999999999999987        46899999999999999999987644

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=99.85  E-value=1e-20  Score=155.07  Aligned_cols=130  Identities=22%  Similarity=0.281  Sum_probs=114.5

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc-------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEecc
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK-------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFV  165 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~-------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~  165 (243)
                      ++|.+.+.||.|+||.||++....+.             ...+.+.+|+.++++++|+||+++++++...+.+|++|||+
T Consensus         3 ~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~l~~e~~   82 (262)
T cd06613           3 EDYELIQRIGSGTYGDVYKARDIATGELVAIKVIKLEPGDDFEIIQQEISMLKECRHPNIVAYFGSYLRRDKLWIVMEYC   82 (262)
T ss_pred             cceEEEEEecCCCceEEEEeEecCCCCEEEEEEEEcCchhhHHHHHHHHHHHHhCCCCChhceEEEEEeCCEEEEEEeCC
Confidence            67899999999999999999865432             14567899999999999999999999999999999999999


Q ss_pred             CCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          166 LNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       166 ~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      .+++|.+++..... .+++..+..++.|++.+|.|||.        +++||+++.++.+||+|||++..+..
T Consensus        83 ~~~~l~~~~~~~~~-~l~~~~~~~~~~ql~~~l~~lh~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~  153 (262)
T cd06613          83 GGGSLQDIYQVTRG-PLSELQIAYVCRETLKGLAYLHETGKIHRDIKGANILLTEDGDVKLADFGVSAQLTA  153 (262)
T ss_pred             CCCcHHHHHHhhcc-CCCHHHHHHHHHHHHHHHHHHHhCCceecCCChhhEEECCCCCEEECccccchhhhh
Confidence            99999998875422 48999999999999999999987        46899999999999999999987643

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=99.85  E-value=5.3e-21  Score=159.71  Aligned_cols=133  Identities=23%  Similarity=0.362  Sum_probs=113.4

Q ss_pred             HhCCCCccceeeecCceEEEEEEecCCc-------------------hhHHHHHHHHHHHHhc-CCCccceEEEEEEeCC
Q 039406           97 ATDGFSDANLLRQDGFGYVHRGVLPNGK-------------------EGEREFQAEVEIISRV-HHKHLVSLVGYYTAGS  156 (243)
Q Consensus        97 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~-------------------~~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~  156 (243)
                      ..++|...+.||+|+||.||++......                   +....+.+|+.+++++ +|+||+++++++..++
T Consensus        10 ~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~   89 (293)
T cd05053          10 PRDRLTLGKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGVCTQEG   89 (293)
T ss_pred             CHhHeEEeeEecccccccEEEEEEecCCCCCCceeEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEcCCC
Confidence            3467888999999999999999754321                   1335688899999999 8999999999999999


Q ss_pred             eeEEEEeccCCCCHHHHhccC--------------CCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCC
Q 039406          157 QRMLVYEFVLNNTLVFHLHGK--------------GQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKF  214 (243)
Q Consensus       157 ~~~lv~e~~~~g~L~~~l~~~--------------~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~  214 (243)
                      .++++|||+.+|+|.+++...              ....+++..++.++.|++.||.|||.        +++|||++.++
T Consensus        90 ~~~li~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~ivH~dlkp~Nil~~~~~  169 (293)
T cd05053          90 PLYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQVARGMEFLASKKCIHRDLAARNVLVTEDH  169 (293)
T ss_pred             CeEEEEEeCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHCCccccccceeeEEEcCCC
Confidence            999999999999999998642              12358899999999999999999986        56899999999


Q ss_pred             cEEEeccCCceecCC
Q 039406          215 EAKVADFGLAKIASD  229 (243)
Q Consensus       215 ~~kl~DFG~a~~~~~  229 (243)
                      .+||+|||+++.+..
T Consensus       170 ~~kL~Dfg~~~~~~~  184 (293)
T cd05053         170 VMKIADFGLARDIHH  184 (293)
T ss_pred             eEEeCcccccccccc
Confidence            999999999987643

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=99.85  E-value=1.3e-20  Score=157.55  Aligned_cols=131  Identities=24%  Similarity=0.371  Sum_probs=113.0

Q ss_pred             CCCCccceeeecCceEEEEEEecCC------------------------------chhHHHHHHHHHHHHhcCCCccceE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNG------------------------------KEGEREFQAEVEIISRVHHKHLVSL  148 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~------------------------------~~~~~~~~~E~~~l~~l~hp~iv~~  148 (243)
                      .+|.+.+.||+|+||.||++.....                              ....+.+.+|+++|++++|+||+++
T Consensus         5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~   84 (296)
T cd05051           5 QPLNFVEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDASDNAREDFLKEVKILSRLSDPNIARL   84 (296)
T ss_pred             hhCcccccccCCCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCccCHHHHHHHHHHHHHHHhcCCCCEeEE
Confidence            6789999999999999999865431                              1235678889999999999999999


Q ss_pred             EEEEEeCCeeEEEEeccCCCCHHHHhccCC---------CCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEEC
Q 039406          149 VGYYTAGSQRMLVYEFVLNNTLVFHLHGKG---------QPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLD  211 (243)
Q Consensus       149 ~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~---------~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~  211 (243)
                      ++++..++..++||||+.+++|.+++....         ...+++..++.++.|++.||.|||.        +++|||++
T Consensus        85 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~LH~~~i~H~dlkp~Nili~  164 (296)
T cd05051          85 LGVCTVDPPLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLESLNFVHRDLATRNCLVG  164 (296)
T ss_pred             EEEEecCCCcEEEEecCCCCCHHHHHHhcccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHcCccccccchhceeec
Confidence            999999999999999999999999986543         1247899999999999999999987        56899999


Q ss_pred             CCCcEEEeccCCceecCC
Q 039406          212 FKFEAKVADFGLAKIASD  229 (243)
Q Consensus       212 ~~~~~kl~DFG~a~~~~~  229 (243)
                      .++.+||+|||+++.+..
T Consensus       165 ~~~~~~l~dfg~~~~~~~  182 (296)
T cd05051         165 KNYTIKIADFGMSRNLYS  182 (296)
T ss_pred             CCCceEEccccceeeccc
Confidence            999999999999987543

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=99.85  E-value=5.4e-21  Score=159.15  Aligned_cols=130  Identities=17%  Similarity=0.229  Sum_probs=112.0

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc--------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEec
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK--------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEF  164 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~--------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  164 (243)
                      ++|++.+.||+|+||.||++......              .....+.+|+.+|++++|+||+++++++...+.+|+||||
T Consensus         1 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~   80 (286)
T cd06622           1 DEIEVLDELGKGNYGSVYKVLHRPTGVTMAMKEIRLELDESKFNQIIMELDILHKAVSPYIVDFYGAFFIEGAVYMCMEY   80 (286)
T ss_pred             ChhhhhhhhcccCCeEEEEEEEcCCCcEEEEEEeecccCHHHHHHHHHHHHHHHhcCCCcHHhhhhheecCCeEEEEEee
Confidence            46888999999999999999865322              1345788999999999999999999999999999999999


Q ss_pred             cCCCCHHHHhccCC-CCCCCHHHHHHHHHHHHHhhhHhhc---------CCCcEEECCCCcEEEeccCCceecC
Q 039406          165 VLNNTLVFHLHGKG-QPTMDWPTRIKIALGSAKGLAYLHD---------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       165 ~~~g~L~~~l~~~~-~~~l~~~~~~~i~~~i~~~l~~lH~---------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      +++++|..++.... ...+++..+..++.+++.+|.|||.         +++|||++.++.+||+|||++..+.
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~  154 (286)
T cd06622          81 MDAGSLDKLYAGGVATEGIPEDVLRRITYAVVKGLKFLKEEHNIIHRDVKPTNVLVNGNGQVKLCDFGVSGNLV  154 (286)
T ss_pred             cCCCCHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhcCCEeeCCCCHHHEEECCCCCEEEeecCCccccc
Confidence            99999998886531 2258999999999999999999984         3579999999999999999997653

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=99.85  E-value=1e-20  Score=159.84  Aligned_cols=130  Identities=22%  Similarity=0.239  Sum_probs=113.9

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVY  162 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  162 (243)
                      ++|...+.||+|+||.||+|....+.+                ..+.+.+|+++|+.++|+||+++++.+...+..|+||
T Consensus         1 ~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~   80 (316)
T cd05574           1 KHFKKIKLLGKGDVGRVFLVRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEILATLDHPFLPTLYASFQTETYLCLVM   80 (316)
T ss_pred             CceEEeeeecCCccEEEEEEEEcCCCcEEEEEEEeccccchHHHHHHHHHHHHHHHhCCCCCchhheeeeecCCEEEEEE
Confidence            468889999999999999997654221                3456888999999999999999999999999999999


Q ss_pred             eccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          163 EFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       163 e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      ||+.+++|.+++.......+++..++.++.|++.+|.|||.        +++|||++.++.++|+|||++....
T Consensus        81 e~~~~~~L~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~  154 (316)
T cd05574          81 DYCPGGELFRLLQRQPGKCLSEEVARFYAAEVLLALEYLHLLGIVYRDLKPENILLHESGHIMLSDFDLSKQSD  154 (316)
T ss_pred             EecCCCCHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHCCeeccCCChHHeEEcCCCCEEEeecchhhccc
Confidence            99999999999876544468999999999999999999976        5689999999999999999988654

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=99.85  E-value=1.6e-20  Score=155.02  Aligned_cols=129  Identities=22%  Similarity=0.320  Sum_probs=105.8

Q ss_pred             CCccceeeecCceEEEEEEecCCc-----------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeC------Ce
Q 039406          101 FSDANLLRQDGFGYVHRGVLPNGK-----------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAG------SQ  157 (243)
Q Consensus       101 ~~~~~~lg~G~~g~V~~~~~~~~~-----------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~------~~  157 (243)
                      |.+.+.||+|+||.||+|.+....                 ...+.+.+|+++|+.++|+||+++++++...      ..
T Consensus         1 ~~i~~~ig~G~~g~V~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~   80 (272)
T cd05075           1 LALGKTLGEGEFGSVMEGQLNQDDSILKVAVKTMKIAICTRSEMEDFLSEAVCMKEFDHPNVMRLIGVCLQTVESEGYPS   80 (272)
T ss_pred             CccccccCcccCceEEEeEEccCCCeeeEEEEecccCcCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEccCCcccCCCC
Confidence            345789999999999999764432                 2345688899999999999999999986432      24


Q ss_pred             eEEEEeccCCCCHHHHhccC----CCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCce
Q 039406          158 RMLVYEFVLNNTLVFHLHGK----GQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAK  225 (243)
Q Consensus       158 ~~lv~e~~~~g~L~~~l~~~----~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~  225 (243)
                      .+++|||+.+|+|.+++...    ....+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++
T Consensus        81 ~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~  160 (272)
T cd05075          81 PVVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIASGMEYLSSKSFIHRDLAARNCMLNENMNVCVADFGLSK  160 (272)
T ss_pred             cEEEEEeCCCCcHHHHHHHhcccCCcccCCHHHHHHHHHHHHHHHHHHHHCCeeccccchhheEEcCCCCEEECCCCccc
Confidence            78999999999999887421    12347899999999999999999986        5689999999999999999998


Q ss_pred             ecCC
Q 039406          226 IASD  229 (243)
Q Consensus       226 ~~~~  229 (243)
                      .+..
T Consensus       161 ~~~~  164 (272)
T cd05075         161 KIYN  164 (272)
T ss_pred             ccCc
Confidence            7643

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=99.85  E-value=1.9e-20  Score=152.76  Aligned_cols=123  Identities=28%  Similarity=0.452  Sum_probs=106.5

Q ss_pred             ceeeecCceEEEEEEecCCc-------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccCCCCHH
Q 039406          105 NLLRQDGFGYVHRGVLPNGK-------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLV  171 (243)
Q Consensus       105 ~~lg~G~~g~V~~~~~~~~~-------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~g~L~  171 (243)
                      ++||+|+||.||++....+.             .....+.+|+.++++++|+||+++++++...+..++||||+.+++|.
T Consensus         1 ~~ig~g~~g~vy~~~~~~~~~~a~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~   80 (250)
T cd05085           1 ELLGKGNFGEVFKGTLKDKTPVAVKTCKEDLPQELKIKFLSEARILKQYDHPNIVKLIGVCTQRQPIYIVMELVPGGDFL   80 (250)
T ss_pred             CccCCCCCceEEEEEecCCcEEEEEecCCcCCHHHHHHHHHHHHHHHhCCCCCcCeEEEEEecCCccEEEEECCCCCcHH
Confidence            36999999999999754321             12446889999999999999999999999999999999999999999


Q ss_pred             HHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          172 FHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       172 ~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      +++..... .+.+..++.++.+++.+|.|||.        +++||+++.++.+||+|||++....
T Consensus        81 ~~~~~~~~-~~~~~~~~~~~~~i~~~l~~lH~~~~~H~dl~p~nili~~~~~~~l~d~g~~~~~~  144 (250)
T cd05085          81 SFLRKKKD-ELKTKQLVKFALDAAAGMAYLESKNCIHRDLAARNCLVGENNVLKISDFGMSRQED  144 (250)
T ss_pred             HHHHhcCC-CCCHHHHHHHHHHHHHHHHHHHhCCeeecccChheEEEcCCCeEEECCCccceecc
Confidence            98865443 47899999999999999999986        5689999999999999999997653

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=99.85  E-value=1.2e-20  Score=155.33  Aligned_cols=126  Identities=24%  Similarity=0.371  Sum_probs=109.9

Q ss_pred             CCCccceeeecCceEEEEEEecCCc------------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEE
Q 039406          100 GFSDANLLRQDGFGYVHRGVLPNGK------------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLV  161 (243)
Q Consensus       100 ~~~~~~~lg~G~~g~V~~~~~~~~~------------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv  161 (243)
                      +|...+.||.|+||.||++....+.                  +....+.+|+++|++++|+||+++++++.+.+..|+|
T Consensus         1 ~~~~~~~ig~g~~~~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv   80 (265)
T cd06631           1 EWTKGEVLGKGAYGTVYCGLTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIVQYLGTCLDDNTISIF   80 (265)
T ss_pred             CccccceEeccCCeEEEEEEEcCCCeEEEEEeecCccchhhHHHHHHHHHHHHHHHHhcCCCCEeeEeeEeecCCeEEEE
Confidence            4778899999999999998653322                  1235688899999999999999999999999999999


Q ss_pred             EeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceec
Q 039406          162 YEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIA  227 (243)
Q Consensus       162 ~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~  227 (243)
                      |||+.+++|.+++....  .+++..+..++.|++.+|.|||.        +++||+++.++.+||+|||++...
T Consensus        81 ~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~  152 (265)
T cd06631          81 MEFVPGGSISSILNRFG--PLPEPVFCKYTKQILDGVAYLHNNCVVHRDIKGNNVMLMPNGIIKLIDFGCARRL  152 (265)
T ss_pred             EecCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCCcccCCcCHHhEEECCCCeEEeccchhhHhh
Confidence            99999999999997544  47889999999999999999987        458999999999999999999865

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=99.85  E-value=1.3e-20  Score=155.53  Aligned_cols=130  Identities=25%  Similarity=0.336  Sum_probs=111.0

Q ss_pred             CCCCccceeeecCceEEEEEEecCC-----------------chhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNG-----------------KEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLV  161 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~-----------------~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv  161 (243)
                      ++|...+.||+|+||.||+|.+...                 ....+.+.+|+.++++++|+||+++++++.+ +..|+|
T Consensus         6 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~-~~~~lv   84 (270)
T cd05056           6 EDITLGRCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYIMRQFDHPHIVKLIGVITE-NPVWIV   84 (270)
T ss_pred             hhceeeeeeCCccceeEEEEEEecCCCCCcceEEEecCCcCCHHHHHHHHHHHHHHHhCCCCchhceeEEEcC-CCcEEE
Confidence            5688889999999999999976432                 1134578899999999999999999998875 567899


Q ss_pred             EeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          162 YEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       162 ~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      |||+.+++|.+++..... .+++..++.++.+++.+|.|||.        +++|||++.++.+||+|||+++.....
T Consensus        85 ~e~~~~~~L~~~l~~~~~-~~~~~~~~~~~~~l~~~l~~lH~~~~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~  160 (270)
T cd05056          85 MELAPLGELRSYLQVNKY-SLDLASLILYSYQLSTALAYLESKRFVHRDIAARNVLVSSPDCVKLGDFGLSRYLEDE  160 (270)
T ss_pred             EEcCCCCcHHHHHHhCCC-CCCHHHHHHHHHHHHHHHHHHHhCCeeccccChheEEEecCCCeEEccCceeeecccc
Confidence            999999999999975443 48999999999999999999987        468999999999999999999876443

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=99.85  E-value=1.1e-20  Score=158.82  Aligned_cols=132  Identities=22%  Similarity=0.360  Sum_probs=112.1

Q ss_pred             hCCCCccceeeecCceEEEEEEecC----C-----------------chhHHHHHHHHHHHHhc-CCCccceEEEEEEeC
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPN----G-----------------KEGEREFQAEVEIISRV-HHKHLVSLVGYYTAG  155 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~----~-----------------~~~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~  155 (243)
                      .++|.+.+.||+|+||.||++....    .                 ....+.+.+|+.+++.+ +|+||+++++++...
T Consensus        14 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~   93 (304)
T cd05101          14 RDKLTLGKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD   93 (304)
T ss_pred             HHHeeecceeeccCCceEEEEEEeccCCCCCCcceeEEeeecccccchHHHHHHHHHHHHHHhhccCCCchheeEEEecC
Confidence            4678889999999999999986421    0                 11345688999999999 899999999999999


Q ss_pred             CeeEEEEeccCCCCHHHHhccCC--------------CCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCC
Q 039406          156 SQRMLVYEFVLNNTLVFHLHGKG--------------QPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFK  213 (243)
Q Consensus       156 ~~~~lv~e~~~~g~L~~~l~~~~--------------~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~  213 (243)
                      +..|+||||+.+++|.+++....              ...+++..++.++.|++.||.|||.        +++|||++.+
T Consensus        94 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~givH~dlkp~Nili~~~  173 (304)
T cd05101          94 GPLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCTYQVARGMEYLASQKCIHRDLAARNVLVTEN  173 (304)
T ss_pred             CceEEEEecCCCCcHHHHHHhcCCcccccccccccCCcccccHHHHHHHHHHHHHHHHHHHHCCeeecccccceEEEcCC
Confidence            99999999999999999987532              1247788899999999999999987        5689999999


Q ss_pred             CcEEEeccCCceecCC
Q 039406          214 FEAKVADFGLAKIASD  229 (243)
Q Consensus       214 ~~~kl~DFG~a~~~~~  229 (243)
                      +.+||+|||+++.+..
T Consensus       174 ~~~kl~D~g~~~~~~~  189 (304)
T cd05101         174 NVMKIADFGLARDVNN  189 (304)
T ss_pred             CcEEECCCccceeccc
Confidence            9999999999987754

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=99.85  E-value=9e-21  Score=157.13  Aligned_cols=130  Identities=24%  Similarity=0.455  Sum_probs=112.6

Q ss_pred             CCCCccceeeecCceEEEEEEecCC-------------------chhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNG-------------------KEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRM  159 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~-------------------~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~  159 (243)
                      ++|.+.+.||+|+||.||+|.....                   .+..+.+.+|+++|++++|+||+++++++...+..|
T Consensus         5 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~   84 (280)
T cd05049           5 DTIVLKRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNFQHENIVKFYGVCTEGDPPI   84 (280)
T ss_pred             HHhhHHhhccccCCceEeeeeeccccCcCCcceEEEEeecccCCHHHHHHHHHHHHHHHhcCCCCchheeeEEecCCCeE
Confidence            5688889999999999999976432                   113567899999999999999999999999999999


Q ss_pred             EEEeccCCCCHHHHhccCC------------CCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEe
Q 039406          160 LVYEFVLNNTLVFHLHGKG------------QPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVA  219 (243)
Q Consensus       160 lv~e~~~~g~L~~~l~~~~------------~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~  219 (243)
                      +||||+++++|.+++...+            ...+++..+..++.+++.+|.|||.        +++|||++.++.+||+
T Consensus        85 lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~i~h~dlkp~nili~~~~~~kl~  164 (280)
T cd05049          85 MVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVYLASQHFVHRDLATRNCLVGYDLVVKIG  164 (280)
T ss_pred             EEEecCCCCCHHHHHHhcCCchhhhcccccccccccHHHHHHHHHHHHHHHHHHhhCCeeccccccceEEEcCCCeEEEC
Confidence            9999999999999986542            2347888999999999999999987        5799999999999999


Q ss_pred             ccCCceecC
Q 039406          220 DFGLAKIAS  228 (243)
Q Consensus       220 DFG~a~~~~  228 (243)
                      |||+++.+.
T Consensus       165 d~g~~~~~~  173 (280)
T cd05049         165 DFGMSRDVY  173 (280)
T ss_pred             Ccccceecc
Confidence            999998653

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=99.85  E-value=1.3e-20  Score=157.17  Aligned_cols=128  Identities=22%  Similarity=0.293  Sum_probs=109.7

Q ss_pred             CCCccceeeecCceEEEEEEecCC----c----------------hhHHHHHHHHHHHHhc-CCCccceEEEEEEeCCee
Q 039406          100 GFSDANLLRQDGFGYVHRGVLPNG----K----------------EGEREFQAEVEIISRV-HHKHLVSLVGYYTAGSQR  158 (243)
Q Consensus       100 ~~~~~~~lg~G~~g~V~~~~~~~~----~----------------~~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~~  158 (243)
                      +|++.+.||+|+||.||++.....    .                ...+.+.+|+.+|+++ +|+||+.+++++..++.+
T Consensus         1 ~y~~~~~lg~G~~g~v~~~~~~~~~~~g~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~   80 (290)
T cd05613           1 NFELLKVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTDTKL   80 (290)
T ss_pred             CceeeeeeccCCcceEEEEEeccCCCCCceEEEEEeehhhhhhcchHHHHHHHHHHHHHhcccCCChhceeeEeecCCeE
Confidence            477889999999999999875321    0                1235677899999999 599999999999999999


Q ss_pred             EEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          159 MLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       159 ~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      |+||||+++++|.+++....  .+.+..+..++.|++.+|.|||.        +++|||++.++.+||+|||+++.+..
T Consensus        81 ~lv~e~~~~~~L~~~l~~~~--~l~~~~~~~~~~qi~~al~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~  157 (290)
T cd05613          81 HLILDYINGGELFTHLSQRE--RFKEQEVQIYSGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFHE  157 (290)
T ss_pred             EEEEecCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeEECCCCCEEEeeCccceeccc
Confidence            99999999999999987554  48888999999999999999987        45899999999999999999987654

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=99.85  E-value=1.2e-20  Score=156.80  Aligned_cols=129  Identities=22%  Similarity=0.283  Sum_probs=112.6

Q ss_pred             CCCccceeeecCceEEEEEEecCCc---------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEec
Q 039406          100 GFSDANLLRQDGFGYVHRGVLPNGK---------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEF  164 (243)
Q Consensus       100 ~~~~~~~lg~G~~g~V~~~~~~~~~---------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  164 (243)
                      +|.+.+.||+|+||.||+|.+..+.               .....+.+|+.++++++|+||+++++++...+..|+||||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~   80 (286)
T cd07832           1 RYKILGRIGEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKALQACQHPYVVKLLDVFPHGSGFVLVMEY   80 (286)
T ss_pred             CceEEeecccCCCcEEEEEEECCCCceEEEEEEEcccccchhhHHHHHHHHHHHhCCCCCCcceeeEEecCCeeEEEecc
Confidence            4788899999999999999865432               1346788999999999999999999999999999999999


Q ss_pred             cCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          165 VLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       165 ~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      + +++|.+++.... ..+++..++.++.|++.+|.|||.        +++||+++.++.++|+|||++......
T Consensus        81 ~-~~~L~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~ni~~~~~~~~~l~dfg~~~~~~~~  152 (286)
T cd07832          81 M-PSDLSEVLRDEE-RPLPEAQVKSYMRMLLKGVAYMHANGIMHRDLKPANLLISADGVLKIADFGLARLFSEE  152 (286)
T ss_pred             c-CCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCcCHHHEEEcCCCcEEEeeeeecccccCC
Confidence            9 999999986544 358999999999999999999986        458999999999999999999887543

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=99.85  E-value=1.4e-20  Score=157.87  Aligned_cols=127  Identities=18%  Similarity=0.265  Sum_probs=111.5

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc-------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEecc
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK-------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFV  165 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~-------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~  165 (243)
                      .+|...+.||+|+||.||+++...+.             ...+.+.+|+.+++.++|+||+++++.+......|+||||+
T Consensus        20 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~v~~~~~~~~~~~~~~lv~e~~   99 (296)
T cd06654          20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYL   99 (296)
T ss_pred             cceeeEEEecCCCCeEEEEEEECCCCcEEEEEEEecCCcchHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEEeeccc
Confidence            57889999999999999999754332             13467889999999999999999999999999999999999


Q ss_pred             CCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          166 LNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       166 ~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      .+++|.+++...   .+.+..+..++.|++.||.|||.        +++|||++.++.+||+|||++....
T Consensus       100 ~~~~L~~~~~~~---~~~~~~~~~i~~ql~~aL~~LH~~gi~H~dLkp~Nill~~~~~~kl~dfg~~~~~~  167 (296)
T cd06654         100 AGGSLTDVVTET---CMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQIT  167 (296)
T ss_pred             CCCCHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEcCCCCEEECccccchhcc
Confidence            999999998643   37889999999999999999987        4589999999999999999988654

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=99.85  E-value=1.4e-20  Score=157.05  Aligned_cols=130  Identities=23%  Similarity=0.408  Sum_probs=112.3

Q ss_pred             CCCCccceeeecCceEEEEEEecCC------------------chhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNG------------------KEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRML  160 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~------------------~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~l  160 (243)
                      ++|.+.+.||+|+||.||++.....                  ....+.+.+|+++|++++|+||+++++++...+..|+
T Consensus         5 ~~~~~~~~lg~G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   84 (288)
T cd05093           5 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIM   84 (288)
T ss_pred             HHeeeccccCCcCCeeEEeeEeccCCCCCcceEEEEEecCCcCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCccEE
Confidence            5788999999999999999874221                  1134568899999999999999999999999999999


Q ss_pred             EEeccCCCCHHHHhccCC-----------CCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEecc
Q 039406          161 VYEFVLNNTLVFHLHGKG-----------QPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADF  221 (243)
Q Consensus       161 v~e~~~~g~L~~~l~~~~-----------~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DF  221 (243)
                      ||||+.+++|.+++...+           ...+++..++.++.|++.+|.|||.        +|+|||++.++.+||+||
T Consensus        85 v~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~lH~~~i~H~dlkp~Nili~~~~~~kl~df  164 (288)
T cd05093          85 VFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAGMVYLASQHFVHRDLATRNCLVGENLLVKIGDF  164 (288)
T ss_pred             EEEcCCCCCHHHHHHHcCCccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeecccCcceEEEccCCcEEeccC
Confidence            999999999999986432           1248999999999999999999987        569999999999999999


Q ss_pred             CCceecC
Q 039406          222 GLAKIAS  228 (243)
Q Consensus       222 G~a~~~~  228 (243)
                      |+++.+.
T Consensus       165 g~~~~~~  171 (288)
T cd05093         165 GMSRDVY  171 (288)
T ss_pred             Ccccccc
Confidence            9998654

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=99.85  E-value=1.3e-20  Score=155.38  Aligned_cols=133  Identities=22%  Similarity=0.247  Sum_probs=112.5

Q ss_pred             HHHhCCCCccceeeecCceEEEEEEecCCc-------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEE
Q 039406           95 ARATDGFSDANLLRQDGFGYVHRGVLPNGK-------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLV  161 (243)
Q Consensus        95 ~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~-------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv  161 (243)
                      +..++++.....||+|+||.||+|.+..++             ...+.+.+|+.++++++|+||+++++++..++..++|
T Consensus         4 ~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv   83 (268)
T cd06624           4 EYEYDENGERVVLGKGTYGIVYAARDLSTQVRIAIKEIPERDSRYVQPLHEEIALHSYLKHRNIVQYLGSDSENGFFKIF   83 (268)
T ss_pred             ccccccCCceEEEecCCceEEEEeEecCCCcEEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCeeeeeeeeccCCEEEEE
Confidence            445567777789999999999999865442             1345788999999999999999999999999999999


Q ss_pred             EeccCCCCHHHHhccCCCCCC--CHHHHHHHHHHHHHhhhHhhc--------CCCcEEECC-CCcEEEeccCCceecC
Q 039406          162 YEFVLNNTLVFHLHGKGQPTM--DWPTRIKIALGSAKGLAYLHD--------DLANILLDF-KFEAKVADFGLAKIAS  228 (243)
Q Consensus       162 ~e~~~~g~L~~~l~~~~~~~l--~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~-~~~~kl~DFG~a~~~~  228 (243)
                      |||+.+++|.+++..... .+  .+..+..++.|++.||.|||.        +++||+++. ++.+||+|||++..+.
T Consensus        84 ~e~~~~~~L~~~l~~~~~-~~~~~~~~~~~~~~qi~~al~~lH~~~i~h~dl~p~nil~~~~~~~~~l~dfg~~~~~~  160 (268)
T cd06624          84 MEQVPGGSLSALLRSKWG-PLKDNEQTIIFYTKQILEGLKYLHDNQIVHRDIKGDNVLVNTYSGVVKISDFGTSKRLA  160 (268)
T ss_pred             EecCCCCCHHHHHHHhcc-cCCCcHHHHHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEcCCCCeEEEecchhheecc
Confidence            999999999999875422 24  778888999999999999987        468999976 6799999999998654

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=99.85  E-value=2.1e-20  Score=152.78  Aligned_cols=128  Identities=28%  Similarity=0.416  Sum_probs=111.6

Q ss_pred             CCCccceeeecCceEEEEEEecCCc------------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEE
Q 039406          100 GFSDANLLRQDGFGYVHRGVLPNGK------------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLV  161 (243)
Q Consensus       100 ~~~~~~~lg~G~~g~V~~~~~~~~~------------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv  161 (243)
                      +|...+.||+|+||.||+|....+.                  +..+.+.+|+.+|++++|+||+++++++.....+|+|
T Consensus         1 ~~~~~~~ig~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv   80 (258)
T cd06632           1 RWRKGELLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQYLGTEREEDNLYIF   80 (258)
T ss_pred             CccccceeeecCCceEEEEEEcCCCcEEEEEEEEEccccccchHHHHHHHHHHHHHHhcCCCCchheeeeEecCCeEEEE
Confidence            4677889999999999999865321                  1346788999999999999999999999999999999


Q ss_pred             EeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          162 YEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       162 ~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      |||+++++|.+++....  .+++..++.++.+++.+|.|||.        +++||+++.++.+||+|||++.....
T Consensus        81 ~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~~~ni~~~~~~~~kl~d~~~~~~~~~  154 (258)
T cd06632          81 LELVPGGSLAKLLKKYG--SFPEPVIRLYTRQILLGLEYLHDRNTVHRDIKGANILVDTNGVVKLADFGMAKQVVE  154 (258)
T ss_pred             EEecCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEccCccceeccc
Confidence            99999999999987553  48889999999999999999986        45899999999999999999987644

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=99.85  E-value=1e-20  Score=157.81  Aligned_cols=127  Identities=21%  Similarity=0.311  Sum_probs=110.3

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch--------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEec
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE--------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEF  164 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~--------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  164 (243)
                      ++|.+.+.||+|+||.||+|..+.+.+              ....+.+|+++|++++|+||+++++++.+++..|+||||
T Consensus         5 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   84 (291)
T cd07844           5 ETYKKLDKLGEGSYATVYKGRSKLTGQLVALKEIRLEHEEGAPFTAIREASLLKDLKHANIVTLHDIIHTKKTLTLVFEY   84 (291)
T ss_pred             cceeEEEEEeecCCeEEEEEEEcCCCcEEEEEEEecccccCCchhHHHHHHHHhhCCCcceeeEEEEEecCCeEEEEEec
Confidence            689999999999999999998654321              124467899999999999999999999999999999999


Q ss_pred             cCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceec
Q 039406          165 VLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIA  227 (243)
Q Consensus       165 ~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~  227 (243)
                      +.+ +|.+++..... .+.+..++.++.|++.||.|||.        +++|||++.++.+||+|||+++..
T Consensus        85 ~~~-~L~~~~~~~~~-~~~~~~~~~~~~ql~~al~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~  153 (291)
T cd07844          85 LDT-DLKQYMDDCGG-GLSMHNVRLFLFQLLRGLAYCHQRRVLHRDLKPQNLLISERGELKLADFGLARAK  153 (291)
T ss_pred             CCC-CHHHHHHhCCC-CCCHHHHHHHHHHHHHHHHHHHhCCeecccCCHHHEEEcCCCCEEECcccccccc
Confidence            975 99988875443 58899999999999999999987        458999999999999999998764

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=99.85  E-value=1.8e-20  Score=153.97  Aligned_cols=132  Identities=22%  Similarity=0.306  Sum_probs=114.9

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc--------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEec
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK--------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEF  164 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~--------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  164 (243)
                      ++|++.+.||.|+||.||++....+.              ...+.+.+|+++|+.++|+||+++++.+...+..|+||||
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~e~   80 (267)
T cd06610           1 DDYELIEVIGVGATAVVYAAICLPNNEKVAIKRIDLEKCQTSVDELRKEVQAMSQCNHPNVVKYYTSFVVGDELWLVMPY   80 (267)
T ss_pred             CcceeeeeecCCCCeEEEEEEEcCCCcEEEEEEeccCCcchHHHHHHHHHHHHHhcCCCCEEEEEEEEeeCCEEEEEEec
Confidence            47899999999999999999865432              1356788999999999999999999999999999999999


Q ss_pred             cCCCCHHHHhccCCC-CCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          165 VLNNTLVFHLHGKGQ-PTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       165 ~~~g~L~~~l~~~~~-~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      +.+++|.+++..... ..+++..+..++.|++.+|.|||.        +++||++++++.+||+|||++..+...
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lh~~~i~h~~l~p~ni~~~~~~~~~l~df~~~~~~~~~  155 (267)
T cd06610          81 LSGGSLLDIMKSSYPRGGLDEAIIATVLKEVLKGLEYLHSNGQIHRDIKAGNILLGEDGSVKIADFGVSASLADG  155 (267)
T ss_pred             cCCCcHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHhEEEcCCCCEEEcccchHHHhccC
Confidence            999999999875422 358999999999999999999987        458999999999999999999877543

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.85  E-value=1.6e-20  Score=156.37  Aligned_cols=130  Identities=23%  Similarity=0.347  Sum_probs=110.5

Q ss_pred             CCCCccceeeecCceEEEEEEecC----C--------------chhHHHHHHHHHHHHhcCCCccceEEEEEEeC--Cee
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPN----G--------------KEGEREFQAEVEIISRVHHKHLVSLVGYYTAG--SQR  158 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~----~--------------~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~--~~~  158 (243)
                      ..|.+.+.||+|+||.||++.+..    +              ......+.+|+.+|++++|+||+++++++...  ...
T Consensus         4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   83 (284)
T cd05079           4 RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGI   83 (284)
T ss_pred             hhhhhceecCCCCceeEEEEEEccCCCCccceEEEEEcCccccHHHHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCCce
Confidence            347888999999999999987431    1              11346788999999999999999999998875  568


Q ss_pred             EEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          159 MLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       159 ~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      ++||||+++++|.+++..... .+++..++.++.+++.+|.|||.        +++|||++.++.+||+|||+++.+..
T Consensus        84 ~lv~e~~~g~~L~~~l~~~~~-~~~~~~~~~i~~~i~~aL~~lH~~gi~H~dlkp~Nil~~~~~~~~l~dfg~~~~~~~  161 (284)
T cd05079          84 KLIMEFLPSGSLKEYLPRNKN-KINLKQQLKYAVQICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIET  161 (284)
T ss_pred             EEEEEccCCCCHHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHHHCCeeecccchheEEEcCCCCEEECCCcccccccc
Confidence            999999999999999865433 48999999999999999999987        56899999999999999999987643

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=99.85  E-value=1.8e-20  Score=153.36  Aligned_cols=130  Identities=26%  Similarity=0.399  Sum_probs=112.7

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc-----------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccCC
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK-----------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLN  167 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~-----------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~  167 (243)
                      .+|.+.+.||+|+||.||++.+..+.           .....+.+|++++++++|+||+++++++......|+||||+.+
T Consensus         4 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~   83 (256)
T cd05112           4 SELTLVQEIGSGQFGLVWLGYWLEKRKVAIKTIREGAMSEEDFIEEAQVMMKLSHPKLVQLYGVCTERSPICLVFEFMEH   83 (256)
T ss_pred             hHeEEEeeecCcccceEEEEEEeCCCeEEEEECCCCCCCHHHHHHHHHHHHhCCCCCeeeEEEEEccCCceEEEEEcCCC
Confidence            46788899999999999999765322           1346788999999999999999999999999999999999999


Q ss_pred             CCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          168 NTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       168 g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      ++|.+++..... .+.+..++.++.+++.+|.|||+        +++||+++.++.+||+|||+++....
T Consensus        84 ~~L~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~lH~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~  152 (256)
T cd05112          84 GCLSDYLRAQRG-KFSQETLLGMCLDVCEGMAYLESSNVIHRDLAARNCLVGENQVVKVSDFGMTRFVLD  152 (256)
T ss_pred             CcHHHHHHhCcc-CCCHHHHHHHHHHHHHHHHHHHHCCccccccccceEEEcCCCeEEECCCcceeeccc
Confidence            999999875433 47889999999999999999986        56899999999999999999987643

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=99.85  E-value=2.5e-20  Score=154.56  Aligned_cols=127  Identities=25%  Similarity=0.375  Sum_probs=110.5

Q ss_pred             CCCccceeeecCceEEEEEEecCCc--------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEecc
Q 039406          100 GFSDANLLRQDGFGYVHRGVLPNGK--------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFV  165 (243)
Q Consensus       100 ~~~~~~~lg~G~~g~V~~~~~~~~~--------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~  165 (243)
                      -|...+.||+|+||.||+|....+.              ...+.+.+|+.++++++|+||+++++++..++..|+||||+
T Consensus         5 ~~~~~~~ig~G~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~   84 (277)
T cd06641           5 LFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYL   84 (277)
T ss_pred             hhhhheeEeecCCeEEEEEEECCCCcEEEEEEeccccchHHHHHHHHHHHHHHhcCCCCEeEEEEEEEeCCeEEEEEEeC
Confidence            3677889999999999999764332              13456888999999999999999999999999999999999


Q ss_pred             CCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          166 LNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       166 ~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      .+++|.+++...   .+++..+..++.+++.++.|||.        +++||+++.++.++|+|||++..+..
T Consensus        85 ~~~~l~~~i~~~---~~~~~~~~~~~~~l~~~l~~lh~~~i~h~dl~p~Ni~i~~~~~~~l~dfg~~~~~~~  153 (277)
T cd06641          85 GGGSALDLLEPG---PLDETQIATILREILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTD  153 (277)
T ss_pred             CCCcHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHccCCeecCCCCHHhEEECCCCCEEEeecccceeccc
Confidence            999999988643   48899999999999999999987        45899999999999999999987643

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=99.85  E-value=1.4e-20  Score=157.19  Aligned_cols=131  Identities=24%  Similarity=0.403  Sum_probs=112.1

Q ss_pred             CCCCccceeeecCceEEEEEEecCC------------------chhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNG------------------KEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRML  160 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~------------------~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~l  160 (243)
                      .+|.+.+.||+|+||.||++.....                  ....+.+.+|+.++++++|+||+++++++...+..++
T Consensus         5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   84 (291)
T cd05094           5 RDIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKFYGVCGDGDPLIM   84 (291)
T ss_pred             HHeEEeeeecccCCCeEEEeEeeccCCCCcceeeEEEecCCccHHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCceEE
Confidence            4688889999999999999864321                  1134678899999999999999999999999999999


Q ss_pred             EEeccCCCCHHHHhccCC--------------CCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEE
Q 039406          161 VYEFVLNNTLVFHLHGKG--------------QPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKV  218 (243)
Q Consensus       161 v~e~~~~g~L~~~l~~~~--------------~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl  218 (243)
                      ||||+.+++|.+++....              ...+++..++.++.+++.+|.|||.        +++|||++.++.+||
T Consensus        85 v~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~i~H~dlkp~Nil~~~~~~~~l  164 (291)
T cd05094          85 VFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLASQHFVHRDLATRNCLVGANLLVKI  164 (291)
T ss_pred             EEecCCCCcHHHHHHhcCcccccccccccccCcCCCCHHHHHHHHHHHHHHHHHHHhCCeeecccCcceEEEccCCcEEE
Confidence            999999999999986532              1247899999999999999999987        568999999999999


Q ss_pred             eccCCceecCC
Q 039406          219 ADFGLAKIASD  229 (243)
Q Consensus       219 ~DFG~a~~~~~  229 (243)
                      +|||+++....
T Consensus       165 ~dfg~a~~~~~  175 (291)
T cd05094         165 GDFGMSRDVYS  175 (291)
T ss_pred             CCCCcccccCC
Confidence            99999986543

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=99.85  E-value=1.1e-20  Score=157.02  Aligned_cols=131  Identities=19%  Similarity=0.267  Sum_probs=111.9

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch---------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEe
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE---------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYE  163 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~---------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e  163 (243)
                      ++|+..+.||+|+||.||+|....+.+               ..+.+.+|+++|++++|+||+++++++..++..++|||
T Consensus         1 ~~y~~~~~i~~g~~~~v~~~~~~~~~~~v~vK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~e   80 (288)
T cd07833           1 NKYEVLGVVGEGAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKVLRQLRHENIVNLKEAFRRKGRLYLVFE   80 (288)
T ss_pred             CceeEEEEecccCCeeEEEEEeCCCCcEEEEehhhhhcccccchhHHHHHHHHHHhcCCCCeeehhheEEECCEEEEEEe
Confidence            468889999999999999998765321               24568899999999999999999999999999999999


Q ss_pred             ccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCC
Q 039406          164 FVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVN  231 (243)
Q Consensus       164 ~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~  231 (243)
                      |+.++.+..++....  .+++..+..++.+++.+|.|||.        +++||+++.++.+||+|||++..+....
T Consensus        81 ~~~~~~l~~~~~~~~--~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~~~ni~~~~~~~~kl~d~g~~~~~~~~~  154 (288)
T cd07833          81 YVERTLLELLEASPG--GLPPDAVRSYIWQLLQAIAYCHSHNIIHRDIKPENILVSESGVLKLCDFGFARALRARP  154 (288)
T ss_pred             cCCCCHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCCEEEEeeecccccCCCc
Confidence            999877766654332  48899999999999999999987        4589999999999999999998875543

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>PTZ00036 glycogen synthase kinase; Provisional

Probab=99.85  E-value=9.9e-21  Score=167.19  Aligned_cols=131  Identities=21%  Similarity=0.303  Sum_probs=104.6

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCch---------hHHHHHHHHHHHHhcCCCccceEEEEEEeC--------CeeEE
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGKE---------GEREFQAEVEIISRVHHKHLVSLVGYYTAG--------SQRML  160 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~---------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~--------~~~~l  160 (243)
                      .++|.+.+.||+|+||.||+|+...+.+         ......+|+.+|+.++|+|||++++++...        ..+++
T Consensus        65 ~~~y~~~~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~~Ei~il~~l~h~niv~l~~~~~~~~~~~~~~~~~l~l  144 (440)
T PTZ00036         65 NKSYKLGNIIGNGSFGVVYEAICIDTSEKVAIKKVLQDPQYKNRELLIMKNLNHINIIFLKDYYYTECFKKNEKNIFLNV  144 (440)
T ss_pred             CCeEEEeEEEEeCCCEEEEEEEECCCCCEEEEEEEecCcchHHHHHHHHHhcCCCCCcceeeeEeecccccCCCceEEEE
Confidence            3579999999999999999998765432         123456799999999999999999887532        24779


Q ss_pred             EEeccCCCCHHHHhcc--CCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCC-cEEEeccCCceecCC
Q 039406          161 VYEFVLNNTLVFHLHG--KGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKF-EAKVADFGLAKIASD  229 (243)
Q Consensus       161 v~e~~~~g~L~~~l~~--~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~-~~kl~DFG~a~~~~~  229 (243)
                      ||||+.+ +|.+++..  .....+++..++.++.|++.||.|||.        ||+|||++.++ .+||+|||+|+.+..
T Consensus       145 vmE~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~gL~yLH~~~IiHrDLKp~NILl~~~~~~vkL~DFGla~~~~~  223 (440)
T PTZ00036        145 VMEFIPQ-TVHKYMKHYARNNHALPLFLVKLYSYQLCRALAYIHSKFICHRDLKPQNLLIDPNTHTLKLCDFGSAKNLLA  223 (440)
T ss_pred             EEecCCc-cHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCcCHHHEEEcCCCCceeeeccccchhccC
Confidence            9999975 77666542  223358899999999999999999976        56899998664 799999999987643

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=99.85  E-value=8.3e-21  Score=162.32  Aligned_cols=130  Identities=18%  Similarity=0.330  Sum_probs=109.7

Q ss_pred             HHhCCCCccceeeecCceEEEEEEecCCch---------------hHHHHHHHHHHHHhcCCCccceEEEEEEeC-----
Q 039406           96 RATDGFSDANLLRQDGFGYVHRGVLPNGKE---------------GEREFQAEVEIISRVHHKHLVSLVGYYTAG-----  155 (243)
Q Consensus        96 ~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~---------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~-----  155 (243)
                      ...++|...+.||+|+||.||+|....+..               ..+.+.+|+.+|++++|+||+++++++...     
T Consensus        12 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~   91 (343)
T cd07878          12 EVPERYQNLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQSLIHARRTYRELRLLKHMKHENVIGLLDVFTPATSIEN   91 (343)
T ss_pred             hhhhhhhhheecccCCCeEEEEEEECCCCCEEEEEEeCchhhhhHHHHHHHHHHHHHHhcCCCchhhhhhhhcccccccc
Confidence            456889999999999999999998654421               234577899999999999999999987543     


Q ss_pred             -CeeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCcee
Q 039406          156 -SQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKI  226 (243)
Q Consensus       156 -~~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~  226 (243)
                       ...|++||++ +++|.+++...   .+++..+..++.|++.||.|||.        +++|||++.++.+||+|||+++.
T Consensus        92 ~~~~~~~~~~~-~~~l~~~~~~~---~l~~~~~~~i~~qi~~aL~~LH~~~ivHrdikp~Nil~~~~~~~kl~Dfg~~~~  167 (343)
T cd07878          92 FNEVYLVTNLM-GADLNNIVKCQ---KLSDEHVQFLIYQLLRGLKYIHSAGIIHRDLKPSNVAVNEDCELRILDFGLARQ  167 (343)
T ss_pred             cCcEEEEeecC-CCCHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHCCeecccCChhhEEECCCCCEEEcCCcccee
Confidence             3579999998 77998887533   48999999999999999999986        56899999999999999999987


Q ss_pred             cCC
Q 039406          227 ASD  229 (243)
Q Consensus       227 ~~~  229 (243)
                      ...
T Consensus       168 ~~~  170 (343)
T cd07878         168 ADD  170 (343)
T ss_pred             cCC
Confidence            654

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=99.85  E-value=1.2e-20  Score=154.45  Aligned_cols=129  Identities=29%  Similarity=0.469  Sum_probs=110.6

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc---------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccCCCC
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK---------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNT  169 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~---------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~g~  169 (243)
                      ++|.+.+.||+|+||.||++......         .....+.+|+.++++++|+||+++++++..+ ..++||||+.+++
T Consensus         6 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~iK~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~-~~~~v~e~~~~~~   84 (254)
T cd05083           6 QKLTLGEIIGEGEFGAVLQGEYTGQKVAVKNIKCDVTAQAFLEETAVMTKLHHKNLVRLLGVILHN-GLYIVMELMSKGN   84 (254)
T ss_pred             HHceeeeeeccCCCCceEecccCCCceEEEeecCcchHHHHHHHHHHHHhCCCCCcCeEEEEEcCC-CcEEEEECCCCCC
Confidence            56888999999999999998644322         1345788999999999999999999998764 5799999999999


Q ss_pred             HHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          170 LVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       170 L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      |.+++.......+++..++.++.|++.+|.|||.        +++|||++.++.+||+|||+++...
T Consensus        85 L~~~l~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~~~H~dl~p~nili~~~~~~kl~Dfg~~~~~~  151 (254)
T cd05083          85 LVNFLRTRGRALVSVIQLLQFSLDVAEGMEYLESKKLVHRDLAARNILVSEDGVAKVSDFGLARVGS  151 (254)
T ss_pred             HHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhCCeeccccCcceEEEcCCCcEEECCCccceecc
Confidence            9999976554458899999999999999999987        5689999999999999999998653

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.85  E-value=1.7e-20  Score=155.94  Aligned_cols=126  Identities=25%  Similarity=0.383  Sum_probs=106.5

Q ss_pred             CCccceeeecCceEEEEEEecCC------------------chhHHHHHHHHHHHHhcCCCccceEEEEEEeC--CeeEE
Q 039406          101 FSDANLLRQDGFGYVHRGVLPNG------------------KEGEREFQAEVEIISRVHHKHLVSLVGYYTAG--SQRML  160 (243)
Q Consensus       101 ~~~~~~lg~G~~g~V~~~~~~~~------------------~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~--~~~~l  160 (243)
                      |.+.+.||+|+||+||++.....                  ......+.+|+++|++++|+||+++++++...  ..+|+
T Consensus         6 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~l   85 (283)
T cd05080           6 LKKIRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQNTSGWKKEINILKTLYHENIVKYKGCCSEQGGKGLQL   85 (283)
T ss_pred             ceeceecccCCCcEEEEeeEccccCCCCceEEEEEeccccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCceEEE
Confidence            37889999999999987643210                  11356788999999999999999999987653  46899


Q ss_pred             EEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          161 VYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       161 v~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      ||||+.+++|.+++...   .+++..++.++.+++.||.|||.        +++|||++.++.+||+|||+++.+..
T Consensus        86 v~e~~~~~~l~~~~~~~---~l~~~~~~~i~~~l~~~l~~lH~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~  159 (283)
T cd05080          86 IMEYVPLGSLRDYLPKH---KLNLAQLLLFAQQICEGMAYLHSQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPE  159 (283)
T ss_pred             EecCCCCCCHHHHHHHc---CCCHHHHHHHHHHHHHHHHHHHHCCeeccccChheEEEcCCCcEEEeecccccccCC
Confidence            99999999999998653   38999999999999999999986        56899999999999999999987643

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=99.85  E-value=9.9e-21  Score=159.94  Aligned_cols=131  Identities=23%  Similarity=0.370  Sum_probs=111.3

Q ss_pred             hCCCCccceeeecCceEEEEEEecC---------------------CchhHHHHHHHHHHHHhc-CCCccceEEEEEEeC
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPN---------------------GKEGEREFQAEVEIISRV-HHKHLVSLVGYYTAG  155 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~---------------------~~~~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~  155 (243)
                      .++|.+.+.||+|+||.||++....                     .......+.+|+.+++++ +|+||+++++++...
T Consensus        11 ~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~   90 (314)
T cd05099          11 RDRLVLGKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDKDLADLISEMELMKLIGKHKNIINLLGVCTQE   90 (314)
T ss_pred             HHHeeeeeeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCCChHHHHHHHHHHHHHHhccCCCCeeeEEEEEccC
Confidence            3678889999999999999986421                     112345678899999999 699999999999999


Q ss_pred             CeeEEEEeccCCCCHHHHhccCC--------------CCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCC
Q 039406          156 SQRMLVYEFVLNNTLVFHLHGKG--------------QPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFK  213 (243)
Q Consensus       156 ~~~~lv~e~~~~g~L~~~l~~~~--------------~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~  213 (243)
                      +.+|+||||+.+|+|.+++....              ...+++..++.++.|++.||.|||.        +++|||++.+
T Consensus        91 ~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~gi~H~dlkp~Nill~~~  170 (314)
T cd05099          91 GPLYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCAYQVARGMEYLESRRCIHRDLAARNVLVTED  170 (314)
T ss_pred             CceEEEEecCCCCcHHHHHHhcCCCcccccccccCCcccccCHHHHHHHHHHHHHHHHHHHHCCeeeccccceeEEEcCC
Confidence            99999999999999999986532              1247888999999999999999987        5689999999


Q ss_pred             CcEEEeccCCceecC
Q 039406          214 FEAKVADFGLAKIAS  228 (243)
Q Consensus       214 ~~~kl~DFG~a~~~~  228 (243)
                      +.+||+|||+++.+.
T Consensus       171 ~~~kL~Dfg~~~~~~  185 (314)
T cd05099         171 NVMKIADFGLARGVH  185 (314)
T ss_pred             CcEEEcccccccccc
Confidence            999999999998764

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=99.85  E-value=1.1e-20  Score=162.33  Aligned_cols=129  Identities=20%  Similarity=0.266  Sum_probs=107.4

Q ss_pred             HHhCCCCccceeeecCceEEEEEEecCCc---------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeC-----
Q 039406           96 RATDGFSDANLLRQDGFGYVHRGVLPNGK---------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAG-----  155 (243)
Q Consensus        96 ~~~~~~~~~~~lg~G~~g~V~~~~~~~~~---------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~-----  155 (243)
                      ...++|...+.||+|+||.||++......               ...+.+.+|+.+|+.++|+||+++++++...     
T Consensus        14 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~   93 (355)
T cd07874          14 TVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKSLEE   93 (355)
T ss_pred             hhhhceeEEEEeeecCCEEEEEEEecCCCceEEEEEeCCcccChHHHHHHHHHHHHHHHhCCCchhceeeeeeccccccc
Confidence            34588999999999999999999754322               1346678899999999999999999988643     


Q ss_pred             -CeeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCcee
Q 039406          156 -SQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKI  226 (243)
Q Consensus       156 -~~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~  226 (243)
                       ...|+||||+++ +|.+.+..    .+++..+..++.|++.||.|||.        +|+|||++.++.+||+|||+++.
T Consensus        94 ~~~~~lv~e~~~~-~l~~~~~~----~l~~~~~~~~~~qi~~aL~~LH~~givHrDikp~Nill~~~~~~kl~Dfg~~~~  168 (355)
T cd07874          94 FQDVYLVMELMDA-NLCQVIQM----ELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLART  168 (355)
T ss_pred             cceeEEEhhhhcc-cHHHHHhh----cCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChHHEEECCCCCEEEeeCccccc
Confidence             357999999965 67666643    37888999999999999999987        56899999999999999999987


Q ss_pred             cCC
Q 039406          227 ASD  229 (243)
Q Consensus       227 ~~~  229 (243)
                      ...
T Consensus       169 ~~~  171 (355)
T cd07874         169 AGT  171 (355)
T ss_pred             CCC
Confidence            644

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=99.85  E-value=1.3e-20  Score=156.48  Aligned_cols=139  Identities=22%  Similarity=0.305  Sum_probs=115.6

Q ss_pred             cHHHHHHHhCCCCccceeeecCceEEEEEEecCCch------------hHHHHHHHHHHHHhc-CCCccceEEEEEEe--
Q 039406           90 TYEELARATDGFSDANLLRQDGFGYVHRGVLPNGKE------------GEREFQAEVEIISRV-HHKHLVSLVGYYTA--  154 (243)
Q Consensus        90 ~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~------------~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~--  154 (243)
                      ++.++....+.|+..+.||.|+||.||++......+            ....+..|+.+++++ +|+||+++++++..  
T Consensus         7 ~~~~~~~~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~a~K~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~   86 (282)
T cd06636           7 DLSALRDPAGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTEDEEEEIKLEINMLKKYSHHRNIATYYGAFIKKS   86 (282)
T ss_pred             hhhhhcChhhhhhhheeeccCCCeEEEEEEEcCCCcEEEEEEEecChHHHHHHHHHHHHHHHhcCCCcEEEEeeehhccc
Confidence            444555566889999999999999999998754321            345678899999998 79999999999853  


Q ss_pred             ----CCeeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccC
Q 039406          155 ----GSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFG  222 (243)
Q Consensus       155 ----~~~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG  222 (243)
                          .+.+|++|||+.+|+|.+++.......+++..++.++.|++.+|.|||.        +++||+++.++.+||+|||
T Consensus        87 ~~~~~~~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~ivH~dl~~~nili~~~~~~~l~dfg  166 (282)
T cd06636          87 PPGHDDQLWLVMEFCGAGSVTDLVKNTKGNALKEDWIAYICREILRGLAHLHAHKVIHRDIKGQNVLLTENAEVKLVDFG  166 (282)
T ss_pred             ccCCCCEEEEEEEeCCCCcHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEeeCc
Confidence                4578999999999999999876554458888899999999999999986        4589999999999999999


Q ss_pred             CceecC
Q 039406          223 LAKIAS  228 (243)
Q Consensus       223 ~a~~~~  228 (243)
                      ++....
T Consensus       167 ~~~~~~  172 (282)
T cd06636         167 VSAQLD  172 (282)
T ss_pred             chhhhh
Confidence            987653

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=99.85  E-value=2.1e-20  Score=154.07  Aligned_cols=132  Identities=23%  Similarity=0.326  Sum_probs=112.9

Q ss_pred             HhCCCCccceeeecCceEEEEEEecCCch------------hHHHHHHHHHHHHhc-CCCccceEEEEEEeCC------e
Q 039406           97 ATDGFSDANLLRQDGFGYVHRGVLPNGKE------------GEREFQAEVEIISRV-HHKHLVSLVGYYTAGS------Q  157 (243)
Q Consensus        97 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~------------~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~------~  157 (243)
                      ..++|.+.+.||+|+||.||+|..+.+.+            ..+.+.+|+.+++++ +|+||+++++++....      .
T Consensus         4 ~~~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~~   83 (275)
T cd06608           4 PTGIFELVEVIGEGTYGKVYKARHKKTGQLVAIKIMDIIEDEEEEIKEEYNILRKYSNHPNIATFYGAFIKKNPPGNDDQ   83 (275)
T ss_pred             chhheeheeeecCCCCeEEEEEEECCCCcEEEEEEEecCchhHHHHHHHHHHHHHhcCCCChheEEEEEEecCCCCcceE
Confidence            34789999999999999999998765431            346788999999999 7999999999997644      4


Q ss_pred             eEEEEeccCCCCHHHHhccCC--CCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceec
Q 039406          158 RMLVYEFVLNNTLVFHLHGKG--QPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIA  227 (243)
Q Consensus       158 ~~lv~e~~~~g~L~~~l~~~~--~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~  227 (243)
                      +|+||||+++++|.+++....  ...+++..+..++.|++.||.|||.        +++||+++.++.+||+|||++...
T Consensus        84 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH~~~i~H~~l~p~ni~~~~~~~~~l~d~~~~~~~  163 (275)
T cd06608          84 LWLVMELCGGGSVTDLVKGLRKKGKRLKEEWIAYILRETLRGLAYLHENKVIHRDIKGQNILLTKNAEVKLVDFGVSAQL  163 (275)
T ss_pred             EEEEEEcCCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCHHHEEEccCCeEEECCCccceec
Confidence            899999999999999886533  3358999999999999999999987        458999999999999999999865


Q ss_pred             C
Q 039406          228 S  228 (243)
Q Consensus       228 ~  228 (243)
                      .
T Consensus       164 ~  164 (275)
T cd06608         164 D  164 (275)
T ss_pred             c
Confidence            4

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=99.85  E-value=1.1e-20  Score=161.75  Aligned_cols=130  Identities=28%  Similarity=0.368  Sum_probs=107.3

Q ss_pred             CCCCccceeeecCceEEEEEEecCC-------------------chhHHHHHHHHHHHHhc-CCCccceEEEEEEe-CCe
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNG-------------------KEGEREFQAEVEIISRV-HHKHLVSLVGYYTA-GSQ  157 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~-------------------~~~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~-~~~  157 (243)
                      ++|.+.+.||+|+||.||+|.+...                   ......+.+|+.+|.++ +|+||+++++++.. +..
T Consensus         7 ~~~~~~~~lG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~~~   86 (343)
T cd05103           7 DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGP   86 (343)
T ss_pred             hHhcccccccCCccceEEEEeeccCCccccceeEEEEEeccCCChHHHHHHHHHHHHHHhccCCccHhhhcceeecCCCc
Confidence            6799999999999999999964211                   11345678899999999 68999999998764 456


Q ss_pred             eEEEEeccCCCCHHHHhccCC-----------------------------------------------------------
Q 039406          158 RMLVYEFVLNNTLVFHLHGKG-----------------------------------------------------------  178 (243)
Q Consensus       158 ~~lv~e~~~~g~L~~~l~~~~-----------------------------------------------------------  178 (243)
                      +++|||||++|+|.+++....                                                           
T Consensus        87 ~~lv~ey~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (343)
T cd05103          87 LMVIVEFCKFGNLSNYLRSKRGEFVPYKTKDARFRQGKSGYGDISEDLKRRLDSITSSQSSASSGFVEEKSLSDVEEEEA  166 (343)
T ss_pred             eEEEEeccCCCcHHHHHHhcCCccccccccccccccccccccchhhhhhhhccccccccccccccccCCCccccchhhhh
Confidence            899999999999999886421                                                           


Q ss_pred             ------CCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          179 ------QPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       179 ------~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                            ...+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++.+.
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dikp~Nil~~~~~~~kl~dfg~~~~~~  230 (343)
T cd05103         167 EQEDLYKKVLTLEDLICYSFQVAKGMEFLASRKCIHRDLAARNILLSENNVVKICDFGLARDIY  230 (343)
T ss_pred             hhhhhhhccCCHHHHHHHHHHHHHHHHHHHhCCeecCCCccCeEEEcCCCcEEEEecccccccc
Confidence                  0136778888999999999999987        5699999999999999999998753

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=99.85  E-value=4.7e-21  Score=168.29  Aligned_cols=129  Identities=25%  Similarity=0.332  Sum_probs=112.1

Q ss_pred             CCCccceeeecCceEEEEEEecCCch------------hHHHHHHHHHHHHhcC-C-----CccceEEEEEEeCCeeEEE
Q 039406          100 GFSDANLLRQDGFGYVHRGVLPNGKE------------GEREFQAEVEIISRVH-H-----KHLVSLVGYYTAGSQRMLV  161 (243)
Q Consensus       100 ~~~~~~~lg~G~~g~V~~~~~~~~~~------------~~~~~~~E~~~l~~l~-h-----p~iv~~~~~~~~~~~~~lv  161 (243)
                      +|.+.++||+|+||.|.+|.+..+++            ...+-..|+.+|..|+ |     -|||+++++|...+++|||
T Consensus       187 rY~V~e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN~k~f~~Q~~~Ei~iL~~ln~~d~~~~~n~Vrm~d~F~fr~HlciV  266 (586)
T KOG0667|consen  187 RYEVLEVLGKGSFGQVVKAYDHKTGEIVAIKIIKNKKRFLRQAQIEIRILELLNKHDPDDKYNIVRMLDYFYFRNHLCIV  266 (586)
T ss_pred             EEEEEEEecccccceeEEEEecCCCcEEEEEeeccChHHHHHHHHHHHHHHHHhccCCCCCeeEEEeeeccccccceeee
Confidence            57889999999999999998776543            3455677999999997 4     3899999999999999999


Q ss_pred             EeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCC--CcEEEeccCCceecCC
Q 039406          162 YEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFK--FEAKVADFGLAKIASD  229 (243)
Q Consensus       162 ~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~--~~~kl~DFG~a~~~~~  229 (243)
                      +|++.. +|.++|+.+....++...++.++.||++||.+||.        ||+||||.+.  ..|||+|||.|.+...
T Consensus       267 fELL~~-NLYellK~n~f~Glsl~~ir~~~~Qil~~L~~L~~l~IIHcDLKPENILL~~~~r~~vKVIDFGSSc~~~q  343 (586)
T KOG0667|consen  267 FELLST-NLYELLKNNKFRGLSLPLVRKFAQQILTALLFLHELGIIHCDLKPENILLKDPKRSRIKVIDFGSSCFESQ  343 (586)
T ss_pred             ehhhhh-hHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCChhheeeccCCcCceeEEecccccccCC
Confidence            999954 99999998887789999999999999999999976        6799999654  4899999999987654

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=99.85  E-value=2.8e-20  Score=153.46  Aligned_cols=129  Identities=25%  Similarity=0.355  Sum_probs=107.8

Q ss_pred             CCccceeeecCceEEEEEEecCCc------------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCe-----
Q 039406          101 FSDANLLRQDGFGYVHRGVLPNGK------------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQ-----  157 (243)
Q Consensus       101 ~~~~~~lg~G~~g~V~~~~~~~~~------------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~-----  157 (243)
                      |.+.+.||+|+||.||+|.+..+.                  .....+.+|+++|+.++|+||+++++++.....     
T Consensus         1 ~~~~~~lg~G~~g~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   80 (273)
T cd05035           1 LKLGKILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDHPNVMKLIGVCFEASSLQKIP   80 (273)
T ss_pred             CccccccCcCCCceEEEEEEecCCCCcceEEEEEeccCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEeeeccCCccccCc
Confidence            567789999999999999764321                  124578899999999999999999998765443     


Q ss_pred             -eEEEEeccCCCCHHHHhccC----CCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCc
Q 039406          158 -RMLVYEFVLNNTLVFHLHGK----GQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLA  224 (243)
Q Consensus       158 -~~lv~e~~~~g~L~~~l~~~----~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a  224 (243)
                       .++||||+.+++|..++...    ....+++..++.++.|++.||.|||.        +++|||+++++.+||+|||++
T Consensus        81 ~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~aL~~lH~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~  160 (273)
T cd05035          81 KPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALGMEYLSNRNFIHRDLAARNCMLREDMTVCVADFGLS  160 (273)
T ss_pred             ccEEEEeccCCCCHHHHHHHhhccCCcccCCHHHHHHHHHHHHHHHHHHHhCCeeccccchheEEECCCCeEEECCccce
Confidence             79999999999999887432    22358899999999999999999987        568999999999999999999


Q ss_pred             eecCC
Q 039406          225 KIASD  229 (243)
Q Consensus       225 ~~~~~  229 (243)
                      +.+..
T Consensus       161 ~~~~~  165 (273)
T cd05035         161 KKIYS  165 (273)
T ss_pred             eeccc
Confidence            87643

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=99.84  E-value=1.2e-20  Score=160.75  Aligned_cols=131  Identities=21%  Similarity=0.336  Sum_probs=111.4

Q ss_pred             CCCCccceeeecCceEEEEEEecCC---------------------chhHHHHHHHHHHHHhc-CCCccceEEEEEEeCC
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNG---------------------KEGEREFQAEVEIISRV-HHKHLVSLVGYYTAGS  156 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~---------------------~~~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~  156 (243)
                      .+|.+.+.||+|+||.||++.....                     ....+.+.+|+.+++++ +|+||+++++++...+
T Consensus        12 ~~~~i~~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~   91 (334)
T cd05100          12 TRLTLGKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDATDKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDG   91 (334)
T ss_pred             hHeeecceeccccCCcEEEEEEeccCCccCCcceeEEEEEcccccCHHHHHHHHHHHHHHHhhcCCCCeeeeeEEEccCC
Confidence            5688999999999999999864210                     11345788999999999 7999999999999999


Q ss_pred             eeEEEEeccCCCCHHHHhccCC--------------CCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCC
Q 039406          157 QRMLVYEFVLNNTLVFHLHGKG--------------QPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKF  214 (243)
Q Consensus       157 ~~~lv~e~~~~g~L~~~l~~~~--------------~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~  214 (243)
                      .+|++|||+.+|+|.+++....              ...+.+..++.++.|++.||.|||.        +++|||++.++
T Consensus        92 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~givH~dlkp~Nill~~~~  171 (334)
T cd05100          92 PLYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCAYQVARGMEYLASQKCIHRDLAARNVLVTEDN  171 (334)
T ss_pred             ceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHCCeeccccccceEEEcCCC
Confidence            9999999999999999986532              1247888899999999999999986        56999999999


Q ss_pred             cEEEeccCCceecCC
Q 039406          215 EAKVADFGLAKIASD  229 (243)
Q Consensus       215 ~~kl~DFG~a~~~~~  229 (243)
                      .+||+|||+++.+..
T Consensus       172 ~~kL~Dfg~~~~~~~  186 (334)
T cd05100         172 VMKIADFGLARDVHN  186 (334)
T ss_pred             cEEECCcccceeccc
Confidence            999999999987643

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=99.84  E-value=2.2e-20  Score=155.49  Aligned_cols=129  Identities=26%  Similarity=0.320  Sum_probs=105.8

Q ss_pred             CCCccceeeecCceEEEEEEecCCch---------------hHHHHHHHHHHHHhc---CCCccceEEEEEEe-----CC
Q 039406          100 GFSDANLLRQDGFGYVHRGVLPNGKE---------------GEREFQAEVEIISRV---HHKHLVSLVGYYTA-----GS  156 (243)
Q Consensus       100 ~~~~~~~lg~G~~g~V~~~~~~~~~~---------------~~~~~~~E~~~l~~l---~hp~iv~~~~~~~~-----~~  156 (243)
                      +|+..+.||+|+||.||+|..+.+.+               ....+.+|+.+++.+   +|+||+++++++..     ..
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~ni~~~~~~~~~~~~~~~~   80 (288)
T cd07863           1 QYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVQTNEDGLPLSTVREVALLKRLEAFDHPNIVRLMDVCATSRTDRET   80 (288)
T ss_pred             CceEeeEEeecCCeEEEEEEECCCCcEEEEEEeccCcCCCCCchHHHHHHHHHHHhhhcCCCCeeeeeeeeccccCCCCc
Confidence            47888999999999999998765431               123456788777765   79999999998864     34


Q ss_pred             eeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          157 QRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       157 ~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      .+++||||+.+ +|.+++.......+++..++.++.|++.||.|||.        +|+|||++.++.+||+|||+++.+.
T Consensus        81 ~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dikp~Nili~~~~~~kl~dfg~~~~~~  159 (288)
T cd07863          81 KVTLVFEHVDQ-DLRTYLDKVPPPGLPAETIKDLMRQFLRGLDFLHANCIVHRDLKPENILVTSGGQVKLADFGLARIYS  159 (288)
T ss_pred             eEEEEEccccc-CHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEECccCcccccc
Confidence            58999999975 88888876544458999999999999999999986        5689999999999999999998765


Q ss_pred             C
Q 039406          229 D  229 (243)
Q Consensus       229 ~  229 (243)
                      .
T Consensus       160 ~  160 (288)
T cd07863         160 C  160 (288)
T ss_pred             C
Confidence            3

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=99.84  E-value=1.2e-20  Score=157.10  Aligned_cols=127  Identities=20%  Similarity=0.250  Sum_probs=111.9

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc--------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEec
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK--------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEF  164 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~--------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  164 (243)
                      ++|++.+.||+|+||.||++....+.              +..+.+.+|+++++.++|+||+++++++...+..|+||||
T Consensus         5 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   84 (284)
T cd06620           5 EDLETISDLGAGNGGSVSKVKHIPTGTVMAKKVVHIGAKSSVRKQILRELQIMHECRSPYIVSFYGAFLNENNICMCMEF   84 (284)
T ss_pred             HHHHHHHHcCCCCCeEEEEEEEcCCCcEEEEEEEEecCcchHHHHHHHHHHHHHHcCCCCcceEeeeEecCCEEEEEEec
Confidence            57888899999999999999765321              2356788999999999999999999999999999999999


Q ss_pred             cCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc---------CCCcEEECCCCcEEEeccCCceec
Q 039406          165 VLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD---------DLANILLDFKFEAKVADFGLAKIA  227 (243)
Q Consensus       165 ~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~---------~~~NiLl~~~~~~kl~DFG~a~~~  227 (243)
                      +++++|.+++...+  .+++..+..++.+++.+|.|||.         +++|||+++++.++|+|||++...
T Consensus        85 ~~~~~L~~~~~~~~--~~~~~~~~~~~~~i~~~l~~LH~~~~i~H~dl~p~nil~~~~~~~~l~d~gl~~~~  154 (284)
T cd06620          85 MDCGSLDRIYKKGG--PIPVEILGKIAVAVVEGLTYLYNVHRIMHRDIKPSNILVNSRGQIKLCDFGVSGEL  154 (284)
T ss_pred             CCCCCHHHHHHhcc--CCCHHHHHHHHHHHHHHHHHHHHhcCeeccCCCHHHEEECCCCcEEEccCCcccch
Confidence            99999999886543  48999999999999999999985         358999999999999999998765

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=99.84  E-value=5.1e-22  Score=169.82  Aligned_cols=140  Identities=23%  Similarity=0.253  Sum_probs=122.9

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVY  162 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  162 (243)
                      .+++.+..||-|+||.|-++..+....                ..+-+..|-.+|..++.+.||++|..|.+..++||+|
T Consensus       420 ~dl~~iaTLGvGgFGRVELV~~~~~~~~fAlKilkK~hIVdtkQqeHv~sEr~Im~~~~s~fIvrLYrTfrd~kyvYmLm  499 (732)
T KOG0614|consen  420 SDLKRIATLGVGGFGRVELVKVNSQKATFALKILKKKHIVDTKQQEHVFSERNIMMECRSDFIVRLYRTFRDSKYVYMLM  499 (732)
T ss_pred             hhhhhhhhcccCccceEEEEEecccchHHHHHHHhHhhccchhHHHHHHhHHHHHHhcCchHHHHHHHHhccchhhhhhH
Confidence            456677789999999999887665542                2344667889999999999999999999999999999


Q ss_pred             eccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCcee
Q 039406          163 EFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNTHV  234 (243)
Q Consensus       163 e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~~~  234 (243)
                      |-|-||.|...+..++  .++...+++++..++.|++|||+        ||+|+|+|.+|.+||.|||+|+.+.....  
T Consensus       500 EaClGGElWTiLrdRg--~Fdd~tarF~~acv~EAfeYLH~k~iIYRDLKPENllLd~~Gy~KLVDFGFAKki~~g~K--  575 (732)
T KOG0614|consen  500 EACLGGELWTILRDRG--SFDDYTARFYVACVLEAFEYLHRKGIIYRDLKPENLLLDNRGYLKLVDFGFAKKIGSGRK--  575 (732)
T ss_pred             HhhcCchhhhhhhhcC--CcccchhhhhHHHHHHHHHHHHhcCceeccCChhheeeccCCceEEeehhhHHHhccCCc--
Confidence            9999999999998766  48999999999999999999998        67999999999999999999999987765  


Q ss_pred             eecccccc
Q 039406          235 STRVMGTF  242 (243)
Q Consensus       235 ~~~~~GT~  242 (243)
                      +.++||||
T Consensus       576 TwTFcGTp  583 (732)
T KOG0614|consen  576 TWTFCGTP  583 (732)
T ss_pred             eeeecCCc
Confidence            44689997

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=99.84  E-value=1.7e-20  Score=155.59  Aligned_cols=131  Identities=27%  Similarity=0.382  Sum_probs=111.8

Q ss_pred             hCCCCccceeeecCceEEEEEEecC-----Cc--------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCee
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPN-----GK--------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQR  158 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~-----~~--------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~  158 (243)
                      .++|.+.+.||+|+||.||+|.+..     ..              .....+.+|+.++++++|+||+++++++.+.+..
T Consensus         5 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~   84 (277)
T cd05036           5 RDSITLLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQDESDFLMEALIMSKFNHQNIVRLIGVSFERLPR   84 (277)
T ss_pred             HHHcEeeeECCCCCCCcEEEEEEecCCCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCc
Confidence            3678899999999999999998765     11              1245688899999999999999999999999999


Q ss_pred             EEEEeccCCCCHHHHhccCCC-----CCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCC---cEEEeccC
Q 039406          159 MLVYEFVLNNTLVFHLHGKGQ-----PTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKF---EAKVADFG  222 (243)
Q Consensus       159 ~lv~e~~~~g~L~~~l~~~~~-----~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~---~~kl~DFG  222 (243)
                      ++||||+.+++|.+++...+.     ..+++..++.++.||+.+|.|||.        +++|||++.++   .+||+|||
T Consensus        85 ~lv~e~~~g~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~nil~~~~~~~~~~kl~dfg  164 (277)
T cd05036          85 FILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCARDVAKGCKYLEENHFIHRDIAARNCLLTCKGPGRVAKIADFG  164 (277)
T ss_pred             EEEEecCCCCCHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccchheEEEeccCCCcceEeccCc
Confidence            999999999999999865431     248899999999999999999987        56999998654   69999999


Q ss_pred             CceecC
Q 039406          223 LAKIAS  228 (243)
Q Consensus       223 ~a~~~~  228 (243)
                      +++.+.
T Consensus       165 ~~~~~~  170 (277)
T cd05036         165 MARDIY  170 (277)
T ss_pred             cccccC
Confidence            998763

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.84  E-value=1e-20  Score=163.30  Aligned_cols=142  Identities=19%  Similarity=0.229  Sum_probs=118.1

Q ss_pred             hCCCCccceeeecCceEEEEEEecCC--------------chhHHHHHHHHHHHHhc-CCCccceEEEEEEeCCeeEEEE
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNG--------------KEGEREFQAEVEIISRV-HHKHLVSLVGYYTAGSQRMLVY  162 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~--------------~~~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~~~lv~  162 (243)
                      ...|++++.||.|+.+.||++.....              ......|.+|+.+|.+| .|.+||+||+|-..++.+||||
T Consensus       360 g~~Yeilk~iG~GGSSkV~kV~~s~~~iyalkkv~~~~~D~qtl~gy~nEI~lL~KLkg~~~IIqL~DYEv~d~~lYmvm  439 (677)
T KOG0596|consen  360 GREYEILKQIGSGGSSKVFKVLNSDKQIYALKKVVLLEADNQTLDGYRNEIALLNKLKGHDKIIQLYDYEVTDGYLYMVM  439 (677)
T ss_pred             cchhhHHHhhcCCCcceeeeeecCCCcchhhhHHHHhhcCHHHHHHHHHHHHHHHHhcCCceEEEEeeeeccCceEEEEe
Confidence            35688999999999999999975432              33567899999999999 4999999999999999999999


Q ss_pred             eccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCcee
Q 039406          163 EFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNTHV  234 (243)
Q Consensus       163 e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~~~  234 (243)
                      ||- ..+|..+|.++......| .++.++.|||.++.++|.        ||+|+|+- .|.+||+|||+|..+..+...+
T Consensus       440 E~G-d~DL~kiL~k~~~~~~~~-~lk~ywkqML~aV~~IH~~gIVHSDLKPANFLlV-kG~LKLIDFGIA~aI~~DTTsI  516 (677)
T KOG0596|consen  440 ECG-DIDLNKILKKKKSIDPDW-FLKFYWKQMLLAVKTIHQHGIVHSDLKPANFLLV-KGRLKLIDFGIANAIQPDTTSI  516 (677)
T ss_pred             ecc-cccHHHHHHhccCCCchH-HHHHHHHHHHHHHHHHHHhceeecCCCcccEEEE-eeeEEeeeechhcccCccccce
Confidence            986 459999998776543344 788999999999999976        67999985 7899999999999987765543


Q ss_pred             e-ecccccc
Q 039406          235 S-TRVMGTF  242 (243)
Q Consensus       235 ~-~~~~GT~  242 (243)
                      . .+-+||+
T Consensus       517 ~kdsQvGT~  525 (677)
T KOG0596|consen  517 VKDSQVGTV  525 (677)
T ss_pred             eeccccCcc
Confidence            2 2457875

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=99.84  E-value=2.6e-20  Score=155.43  Aligned_cols=129  Identities=20%  Similarity=0.283  Sum_probs=108.6

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCc--------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEe
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGK--------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYE  163 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~--------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e  163 (243)
                      +++|.+.+.||+|+||.||+|....+.              .....+.+|+.+|+.++|+||+++++++..++..|+|||
T Consensus         4 ~~~y~~~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~lv~e   83 (291)
T cd07870           4 ATSYLNLEKLGEGSYATVYKGISRINGQLVALKVISMKTEEGVPFTAIREASLLKGLKHANIVLLHDIIHTKETLTFVFE   83 (291)
T ss_pred             cceeEEEEEEEecCCEEEEEEEEcCCCcEEEEEEecccCcCCCcHHHHHHHHHHHhcCCCCEeEEEEEEecCCeEEEEEe
Confidence            478999999999999999999765332              123457789999999999999999999999999999999


Q ss_pred             ccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          164 FVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       164 ~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      |+. ++|.+++..... .+.+..++.++.|++.||.|||.        +++|||++.++++||+|||+++...
T Consensus        84 ~~~-~~l~~~~~~~~~-~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~  154 (291)
T cd07870          84 YMH-TDLAQYMIQHPG-GLHPYNVRLFMFQLLRGLAYIHGQHILHRDLKPQNLLISYLGELKLADFGLARAKS  154 (291)
T ss_pred             ccc-CCHHHHHHhCCC-CCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChHHEEEcCCCcEEEeccccccccC
Confidence            996 577776654332 47888889999999999999987        4689999999999999999998643

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=99.84  E-value=3.1e-20  Score=152.56  Aligned_cols=123  Identities=28%  Similarity=0.408  Sum_probs=104.0

Q ss_pred             eeeecCceEEEEEEecCC----------------chhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccCCCC
Q 039406          106 LLRQDGFGYVHRGVLPNG----------------KEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNT  169 (243)
Q Consensus       106 ~lg~G~~g~V~~~~~~~~----------------~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~g~  169 (243)
                      .||+|+||.||+|.+...                ....+.+.+|+.+|++++|+||+++++++.. ...++||||+++++
T Consensus         2 ~ig~G~~g~v~~~~~~~~~~~~~vavk~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~-~~~~lv~e~~~~~~   80 (257)
T cd05115           2 ELGSGNFGCVKKGVYKMRKKQIDVAIKVLKNENEKSVRDEMMREAEIMHQLDNPYIVRMIGVCEA-EALMLVMEMASGGP   80 (257)
T ss_pred             ccCCCCcccEEEEEEecCCCceeEEEEEcccccChHHHHHHHHHHHHHHhcCCCCeEEEEEEEcC-CCeEEEEEeCCCCC
Confidence            489999999999865411                1134668899999999999999999998764 57899999999999


Q ss_pred             HHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          170 LVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       170 L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      |.+++..... .+++..++.++.|++.+|.|||.        +++|||++.++.+||+|||+++.+...
T Consensus        81 L~~~l~~~~~-~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~  148 (257)
T cd05115          81 LNKFLSGKKD-EITVSNVVELMHQVSMGMKYLEGKNFVHRDLAARNVLLVNQHYAKISDFGLSKALGAD  148 (257)
T ss_pred             HHHHHHhCCC-CCCHHHHHHHHHHHHHHHHHHHhcCeeecccchheEEEcCCCcEEeccCCccccccCC
Confidence            9999865433 58999999999999999999987        468999999999999999999876443

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=99.84  E-value=2.2e-20  Score=156.38  Aligned_cols=128  Identities=21%  Similarity=0.305  Sum_probs=111.0

Q ss_pred             CCCccceeeecCceEEEEEEecCCch------------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEE
Q 039406          100 GFSDANLLRQDGFGYVHRGVLPNGKE------------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLV  161 (243)
Q Consensus       100 ~~~~~~~lg~G~~g~V~~~~~~~~~~------------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv  161 (243)
                      +|...+.||+|+||.||+|....+..                  ....+.+|++++++++|+||+++++++.+.+..|+|
T Consensus         1 ~y~~~~~lg~g~~~~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv   80 (298)
T cd07841           1 RYEKGKKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNIIGLLDVFGHKSNINLV   80 (298)
T ss_pred             CceeeeeeeeccccEEEEEEECCCCcEEEEEEEeccccccccchhhHHHHHHHHHHhhcCCCCChhhhheeecCCEEEEE
Confidence            47778899999999999998654321                  234567899999999999999999999999999999


Q ss_pred             EeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          162 YEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       162 ~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      |||+ +++|.+++.... ..+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++....
T Consensus        81 ~e~~-~~~L~~~i~~~~-~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dl~p~nill~~~~~~~l~dfg~~~~~~~  154 (298)
T cd07841          81 FEFM-ETDLEKVIKDKS-IVLTPADIKSYMLMTLRGLEYLHSNWILHRDLKPNNLLIASDGVLKLADFGLARSFGS  154 (298)
T ss_pred             Eccc-CCCHHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHHhCCeeecCCChhhEEEcCCCCEEEccceeeeeccC
Confidence            9999 889999997654 258999999999999999999987        46899999999999999999987754

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.84  E-value=2e-20  Score=155.23  Aligned_cols=121  Identities=28%  Similarity=0.287  Sum_probs=101.3

Q ss_pred             eeeecCceEEEEEEecCC-------------------------------------chhHHHHHHHHHHHHhcCCCccceE
Q 039406          106 LLRQDGFGYVHRGVLPNG-------------------------------------KEGEREFQAEVEIISRVHHKHLVSL  148 (243)
Q Consensus       106 ~lg~G~~g~V~~~~~~~~-------------------------------------~~~~~~~~~E~~~l~~l~hp~iv~~  148 (243)
                      .||+|+||.||+|.....                                     ......+.+|+.+++.++|+||+++
T Consensus         2 ~lG~G~~~~vy~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~~~~l~h~niv~~   81 (274)
T cd05076           2 HLGQGTRTNIYDGRLRVEGGGEPEEDEMEDEDPLVEGNNNGRELRVVLKVLDPSHRDIALAFFETASLMSQVSHIHLAFV   81 (274)
T ss_pred             CcCcccccceecceeEeccCCCCcccccccccccccccCCCeeeeEEEEecChHHHHHHHHHHHHHHHHhcCCCCCeeeE
Confidence            699999999999974311                                     0023467888999999999999999


Q ss_pred             EEEEEeCCeeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCC------
Q 039406          149 VGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKF------  214 (243)
Q Consensus       149 ~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~------  214 (243)
                      ++++...+..|+||||+++|+|..++..... .+++..++.++.|++.||.|||.        +++|||++..+      
T Consensus        82 ~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~-~~~~~~~~~i~~qi~~~l~~lH~~~iiH~dlkp~Nill~~~~~~~~~~  160 (274)
T cd05076          82 HGVCVRGSENIMVEEFVEHGPLDVCLRKEKG-RVPVAWKITVAQQLASALSYLEDKNLVHGNVCAKNILLARLGLAEGTS  160 (274)
T ss_pred             EEEEEeCCceEEEEecCCCCcHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHHcCCccCCCCCcccEEEeccCcccCcc
Confidence            9999999999999999999999998865333 48899999999999999999987        46899997643      


Q ss_pred             -cEEEeccCCceec
Q 039406          215 -EAKVADFGLAKIA  227 (243)
Q Consensus       215 -~~kl~DFG~a~~~  227 (243)
                       .+||+|||++...
T Consensus       161 ~~~kl~d~g~~~~~  174 (274)
T cd05076         161 PFIKLSDPGVSFTA  174 (274)
T ss_pred             ceeeecCCcccccc
Confidence             4899999998654

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.84  E-value=1.6e-21  Score=172.18  Aligned_cols=131  Identities=27%  Similarity=0.388  Sum_probs=115.1

Q ss_pred             CccceeeecCceEEEEEEecCCc-----------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEec
Q 039406          102 SDANLLRQDGFGYVHRGVLPNGK-----------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEF  164 (243)
Q Consensus       102 ~~~~~lg~G~~g~V~~~~~~~~~-----------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  164 (243)
                      ...++||+|.||.|++|.|..-.                 .....|++|+.+|.+|+|+|+|+|||+..+ ..+.||||+
T Consensus       113 ~l~e~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d~l~~~mddflrEas~M~~L~H~hliRLyGvVl~-qp~mMV~EL  191 (1039)
T KOG0199|consen  113 KLYELLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDDSLNAIMDDFLREASHMLKLQHPHLIRLYGVVLD-QPAMMVFEL  191 (1039)
T ss_pred             HHHHHhcCcceeeEeeccccCCCCcEEeEEEEeccCCccchhHHHHHHHHHHHHhccCcceeEEeeeecc-chhhHHhhh
Confidence            34578999999999999776521                 156789999999999999999999999887 778899999


Q ss_pred             cCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHh------hcCC--CcEEECCCCcEEEeccCCceecCCCCce
Q 039406          165 VLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL------HDDL--ANILLDFKFEAKVADFGLAKIASDVNTH  233 (243)
Q Consensus       165 ~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~l------H~~~--~NiLl~~~~~~kl~DFG~a~~~~~~~~~  233 (243)
                      ++.|+|.+.|++..+..|.....+.|+.||+.|+.||      |||+  -|||+.....|||+||||.+.+..++..
T Consensus       192 aplGSLldrLrka~~~~llv~~Lcdya~QiA~aM~YLeskrlvHRDLAARNlllasprtVKI~DFGLmRaLg~ned~  268 (1039)
T KOG0199|consen  192 APLGSLLDRLRKAKKAILLVSRLCDYAMQIAKAMQYLESKRLVHRDLAARNLLLASPRTVKICDFGLMRALGENEDM  268 (1039)
T ss_pred             cccchHHHHHhhccccceeHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhheecccceeeeecccceeccCCCCcc
Confidence            9999999999875556788899999999999999998      8898  4999999999999999999999776653

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=99.84  E-value=2.5e-20  Score=154.88  Aligned_cols=130  Identities=25%  Similarity=0.404  Sum_probs=111.4

Q ss_pred             CCCCccceeeecCceEEEEEEecC------------------CchhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPN------------------GKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRML  160 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~------------------~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~l  160 (243)
                      ++|...++||+|+||.||++....                  .......+.+|+++++.++|+||+++++++...+..++
T Consensus         5 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   84 (280)
T cd05092           5 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTVLQHQHIVRFYGVCTEGRPLLM   84 (280)
T ss_pred             HhceeccccCCccCCeEEEeEEecCCCCCCceEEEEEecCcCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEecCCceEE
Confidence            567888999999999999986321                  11235678999999999999999999999999999999


Q ss_pred             EEeccCCCCHHHHhccCCC-------------CCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEe
Q 039406          161 VYEFVLNNTLVFHLHGKGQ-------------PTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVA  219 (243)
Q Consensus       161 v~e~~~~g~L~~~l~~~~~-------------~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~  219 (243)
                      ||||+.+++|.+++.....             ..+++..++.++.|++.||.|||.        +++|||+++++.+||+
T Consensus        85 v~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~~i~H~dlkp~nil~~~~~~~kL~  164 (280)
T cd05092          85 VFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIASGMVYLASLHFVHRDLATRNCLVGQGLVVKIG  164 (280)
T ss_pred             EEecCCCCCHHHHHHhcCcchhhhcccccCCccccCHHHHHHHHHHHHHHHHHHHHCCeecccccHhhEEEcCCCCEEEC
Confidence            9999999999999865421             247889999999999999999986        5689999999999999


Q ss_pred             ccCCceecC
Q 039406          220 DFGLAKIAS  228 (243)
Q Consensus       220 DFG~a~~~~  228 (243)
                      |||+++.+.
T Consensus       165 dfg~~~~~~  173 (280)
T cd05092         165 DFGMSRDIY  173 (280)
T ss_pred             CCCceeEcC
Confidence            999998653

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=99.84  E-value=3.3e-20  Score=151.83  Aligned_cols=130  Identities=16%  Similarity=0.245  Sum_probs=113.1

Q ss_pred             CCCccceeeecCceEEEEEEecCCc---------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEec
Q 039406          100 GFSDANLLRQDGFGYVHRGVLPNGK---------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEF  164 (243)
Q Consensus       100 ~~~~~~~lg~G~~g~V~~~~~~~~~---------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  164 (243)
                      +|...+.||+|+||.||++....+.               ...+.+.+|+.++++++|+||+++++++...+..|+||||
T Consensus         1 ~y~~~~~lg~g~~g~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~   80 (256)
T cd08218           1 KYVKVKKIGEGSFGKAILVKSKEDGKQYVIKEINISKMSPKEREESRKEVAVLSNMKHPNIVQYQESFEENGNLYIVMDY   80 (256)
T ss_pred             CceEEEEeccCCceEEEEEEEcCCCCEEEEEEEEhHhCChHHHHHHHHHHHHHHhCCCCCeeeeEeeecCCCeEEEEEec
Confidence            4788999999999999998765432               1345688999999999999999999999999999999999


Q ss_pred             cCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          165 VLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       165 ~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      +.+++|.+++.......+++..++.++.|++.+|.|||.        +++|||++.++.++|+|||++..+..
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~~l~~~nil~~~~~~~~l~d~~~~~~~~~  153 (256)
T cd08218          81 CEGGDLYKKINAQRGVLFPEDQILDWFVQICLALKHVHDRKILHRDIKSQNIFLTKDGTIKLGDFGIARVLNS  153 (256)
T ss_pred             CCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCEEEeeccceeecCc
Confidence            999999998876544457899999999999999999986        45899999999999999999987644

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=99.84  E-value=3.7e-20  Score=151.29  Aligned_cols=131  Identities=24%  Similarity=0.338  Sum_probs=115.7

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch-----------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccCC
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE-----------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLN  167 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~-----------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~  167 (243)
                      ++|...+.||+|+||.||++....+..           ..+.+.+|++++++++|+||+++++++.+....|++|||+.+
T Consensus         3 ~~y~~~~~i~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~   82 (256)
T cd06612           3 EVFDILEKLGEGSYGSVYKAIHKETGQVVAIKVVPVEEDLQEIIKEISILKQCDSPYIVKYYGSYFKNTDLWIVMEYCGA   82 (256)
T ss_pred             ccchhhhhhcCCCCeEEEEEEEcCCCcEEEEEEeecHHHHHHHHHHHHHHHhCCCCcEeeeeeeeecCCcEEEEEecCCC
Confidence            678999999999999999998765321           256789999999999999999999999999999999999999


Q ss_pred             CCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          168 NTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       168 g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      ++|.+++..... .+++..++.++.+++.+|.|||.        +++||+++.++.+||+|||++..+...
T Consensus        83 ~~L~~~l~~~~~-~l~~~~~~~~~~~l~~~l~~lh~~~i~H~dl~~~ni~~~~~~~~~l~dfg~~~~~~~~  152 (256)
T cd06612          83 GSVSDIMKITNK-TLTEEEIAAILYQTLKGLEYLHSNKKIHRDIKAGNILLNEEGQAKLADFGVSGQLTDT  152 (256)
T ss_pred             CcHHHHHHhCcc-CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCcceEEECCCCcEEEcccccchhcccC
Confidence            999999865443 58999999999999999999986        458999999999999999999877543

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=99.84  E-value=3.7e-20  Score=151.46  Aligned_cols=130  Identities=17%  Similarity=0.274  Sum_probs=111.2

Q ss_pred             CCCccceeeecCceEEEEEEecCCc---------------hhHHHHHHHHHHHHhcCCCccceEEEEEEe-CCeeEEEEe
Q 039406          100 GFSDANLLRQDGFGYVHRGVLPNGK---------------EGEREFQAEVEIISRVHHKHLVSLVGYYTA-GSQRMLVYE  163 (243)
Q Consensus       100 ~~~~~~~lg~G~~g~V~~~~~~~~~---------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~~~~lv~e  163 (243)
                      +|++.+.||+|+||.||++....+.               ...+.+.+|++++++++|+|++++++.+.. ++.+|+|||
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~e   80 (257)
T cd08223           1 AYCFVRVVGKGSYGEVSLVRHRTDGKQYVIKKLNLRNASRRERKAAEQEAQLLSQLKHPNIVAYRESWEGEDGLLYIVMG   80 (257)
T ss_pred             CceEEEEecCCCCeEEEEEEEcCCCcEEEEEEEehhhcCHHHHHHHHHHHHHHHhCCCCCeeeeeeeecCCCCEEEEEec
Confidence            4888999999999999999865432               134567889999999999999999998764 446899999


Q ss_pred             ccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          164 FVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       164 ~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      |+.+++|.+++.......+++..++.++.+++.+|.|||.        +++||+++.++.+||+|||+++.+..
T Consensus        81 ~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~l~~~l~~lH~~~i~H~di~p~nil~~~~~~~~l~df~~~~~~~~  154 (257)
T cd08223          81 FCEGGDLYHKLKEQKGKLLPENQVVEWFVQIAMALQYLHEKHILHRDLKTQNVFLTRTNIIKVGDLGIARVLEN  154 (257)
T ss_pred             ccCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCchhEEEecCCcEEEecccceEEecc
Confidence            9999999999876544458999999999999999999987        46899999999999999999987743

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=99.84  E-value=3.2e-20  Score=153.99  Aligned_cols=129  Identities=21%  Similarity=0.333  Sum_probs=110.2

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc------------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK------------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRML  160 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~------------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~l  160 (243)
                      ++|...+.||+|+||.||+|.+..+.                  ...+.+.+|+.+++.++|+||+++++++.. ...++
T Consensus         7 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-~~~~l   85 (279)
T cd05109           7 TELKKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAYVMAGVGSPYVCRLLGICLT-STVQL   85 (279)
T ss_pred             hheeeeeecCCCCCceEEEEEEecCCCccceEEEEEEecCCCCHHHHHHHHHHHHHHHhcCCCCCceEEEEEcC-CCcEE
Confidence            67888999999999999999753221                  134567889999999999999999999875 45789


Q ss_pred             EEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          161 VYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       161 v~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      +|||+++|+|.+++..... .+++..++.++.|++.||.|||.        +++|||+++++.+||+|||+++.+..
T Consensus        86 ~~~~~~~g~l~~~l~~~~~-~~~~~~~~~~~~qi~~~L~~lH~~~iiH~dlkp~Nil~~~~~~~kL~dfG~~~~~~~  161 (279)
T cd05109          86 VTQLMPYGCLLDYVRENKD-RIGSQDLLNWCVQIAKGMSYLEEVRLVHRDLAARNVLVKSPNHVKITDFGLARLLDI  161 (279)
T ss_pred             EEEcCCCCCHHHHHhhccC-CCCHHHHHHHHHHHHHHHHHHHHCCeeccccccceEEEcCCCcEEECCCCceeeccc
Confidence            9999999999999875433 48999999999999999999987        56999999999999999999998753

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=99.84  E-value=3.2e-20  Score=152.83  Aligned_cols=127  Identities=24%  Similarity=0.371  Sum_probs=110.6

Q ss_pred             CCCccceeeecCceEEEEEEecCCch----------------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCe
Q 039406          100 GFSDANLLRQDGFGYVHRGVLPNGKE----------------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQ  157 (243)
Q Consensus       100 ~~~~~~~lg~G~~g~V~~~~~~~~~~----------------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~  157 (243)
                      +|.+.+.||+|+||.||+|.......                      ..+.+.+|+.++++++|+||+++++++...+.
T Consensus         1 ~~~~~~~ig~g~~~~v~~a~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   80 (267)
T cd06628           1 KWIKGALIGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHENIVQYLGSSLDADH   80 (267)
T ss_pred             CccccceeecCCCeEEEEEEecCCCcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEeCCc
Confidence            36778899999999999997543211                      22567889999999999999999999999999


Q ss_pred             eEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          158 RMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       158 ~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      .++||||+.+++|.+++...+  .+++..+..++.+++.+|.|||.        +++|||++.++.+||+|||+++.+.
T Consensus        81 ~~lv~e~~~~~~L~~~l~~~~--~l~~~~~~~~~~~l~~~l~~lH~~~ivH~di~p~nil~~~~~~~~l~dfg~~~~~~  157 (267)
T cd06628          81 LNIFLEYVPGGSVAALLNNYG--AFEETLVRNFVRQILKGLNYLHNRGIIHRDIKGANILVDNKGGIKISDFGISKKLE  157 (267)
T ss_pred             cEEEEEecCCCCHHHHHHhcc--CccHHHHHHHHHHHHHHHHHHHhcCcccccCCHHHEEEcCCCCEEecccCCCcccc
Confidence            999999999999999997553  48888999999999999999986        4589999999999999999998775

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=99.84  E-value=3.6e-21  Score=166.78  Aligned_cols=140  Identities=21%  Similarity=0.289  Sum_probs=116.4

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch------------hH---------HHHHHHHHHHHhcC---CCccceEEEEEEe
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE------------GE---------REFQAEVEIISRVH---HKHLVSLVGYYTA  154 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~------------~~---------~~~~~E~~~l~~l~---hp~iv~~~~~~~~  154 (243)
                      .+|..++.+|+|+||.|+.|+++....            ..         -.+-.||.||.+|+   |+||++++++|++
T Consensus       561 s~yttlq~lG~GAyGkV~lai~K~n~~eVViK~I~KeRIL~DtWvrDrkLGtVp~EIqIla~l~~~sH~NIlKlLdfFEd  640 (772)
T KOG1152|consen  561 SDYTTLQPLGEGAYGKVNLAIHKENNYEVVIKMIFKERILVDTWVRDRKLGTVPSEIQILATLNKHSHENILKLLDFFED  640 (772)
T ss_pred             ccceeeeeccccccceEEEeeecccceEEEeeehhhhhhhhhhhhcccccCccchhHHHHHHhhhcCccchhhhhheeec
Confidence            568889999999999999999876532            11         11235999999997   9999999999999


Q ss_pred             CCeeEEEEecc-CCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc------CC--CcEEECCCCcEEEeccCCce
Q 039406          155 GSQRMLVYEFV-LNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD------DL--ANILLDFKFEAKVADFGLAK  225 (243)
Q Consensus       155 ~~~~~lv~e~~-~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~------~~--~NiLl~~~~~~kl~DFG~a~  225 (243)
                      ++++||+||-. ++.+|+++|..+.  .+++.++..|++|++.|+++||.      |+  +|++++.+|-+||+|||.|.
T Consensus       641 dd~yyl~te~hg~gIDLFd~IE~kp--~m~E~eAk~IFkQV~agi~hlh~~~ivhrdikdenvivd~~g~~klidfgsaa  718 (772)
T KOG1152|consen  641 DDYYYLETEVHGEGIDLFDFIEFKP--RMDEPEAKLIFKQVVAGIKHLHDQGIVHRDIKDENVIVDSNGFVKLIDFGSAA  718 (772)
T ss_pred             CCeeEEEecCCCCCcchhhhhhccC--ccchHHHHHHHHHHHhccccccccCceecccccccEEEecCCeEEEeeccchh
Confidence            99999999976 5679999997665  49999999999999999999965      55  89999999999999999998


Q ss_pred             ecCCCCceeeeccccccC
Q 039406          226 IASDVNTHVSTRVMGTFG  243 (243)
Q Consensus       226 ~~~~~~~~~~~~~~GT~G  243 (243)
                      .....-.   ..++||.|
T Consensus       719 ~~ksgpf---d~f~gtv~  733 (772)
T KOG1152|consen  719 YTKSGPF---DVFVGTVD  733 (772)
T ss_pred             hhcCCCc---ceeeeecc
Confidence            7654432   23677754

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=99.84  E-value=2.7e-20  Score=153.27  Aligned_cols=128  Identities=22%  Similarity=0.289  Sum_probs=109.3

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc------------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeC--Cee
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK------------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAG--SQR  158 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~------------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~--~~~  158 (243)
                      .+|...+.||+|+||.||++....+.                  +..+.+.+|+.++++++|+||+++++++.+.  ..+
T Consensus         2 ~~~~~~~~l~~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~   81 (265)
T cd06652           2 TNWRLGKLLGQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHERIVQYYGCLRDPMERTL   81 (265)
T ss_pred             CcceEeeEEecCCceEEEEEEEcCCCcEEEEEEeecCcCCcccHHHHHHHHHHHHHHHhcCCCCeeeEEeEeccCCCceE
Confidence            57888999999999999999754422                  1245678899999999999999999988763  468


Q ss_pred             EEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          159 MLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       159 ~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      ++||||+++++|.+++....  .+++..++.++.+++.+|.|||.        +++|||++.++.+||+|||+++.+.
T Consensus        82 ~~v~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~l~Dfg~~~~~~  157 (265)
T cd06652          82 SIFMEHMPGGSIKDQLKSYG--ALTENVTRKYTRQILEGVSYLHSNMIVHRDIKGANILRDSVGNVKLGDFGASKRLQ  157 (265)
T ss_pred             EEEEEecCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEecCCCCEEECcCccccccc
Confidence            89999999999999987543  37888899999999999999987        4589999999999999999998653

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=99.84  E-value=3.1e-20  Score=153.50  Aligned_cols=122  Identities=25%  Similarity=0.486  Sum_probs=104.6

Q ss_pred             ceeeecCceEEEEEEecCCc----------------hhHHHHHHHHHHHHhc-CCCccceEEEEEEeCCeeEEEEeccCC
Q 039406          105 NLLRQDGFGYVHRGVLPNGK----------------EGEREFQAEVEIISRV-HHKHLVSLVGYYTAGSQRMLVYEFVLN  167 (243)
Q Consensus       105 ~~lg~G~~g~V~~~~~~~~~----------------~~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~~~lv~e~~~~  167 (243)
                      +.||+|+||.||++.+..+.                ...+.+.+|++++.++ +|+||+++++++...+..|+||||+.+
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~   80 (270)
T cd05047           1 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPH   80 (270)
T ss_pred             CcCCCCCCceEEEEEEcCCCCeeEEEEEEccccCCHHHHHHHHHHHHHHHhhccCCCeeeEEEEEecCCCceEEEEeCCC
Confidence            36899999999999765431                1235678899999999 899999999999999999999999999


Q ss_pred             CCHHHHhccCC--------------CCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCce
Q 039406          168 NTLVFHLHGKG--------------QPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAK  225 (243)
Q Consensus       168 g~L~~~l~~~~--------------~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~  225 (243)
                      ++|.+++....              ...+++..++.++.+++.||.|||.        +++|||++.++.+||+|||+++
T Consensus        81 ~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~~lH~~~i~H~dikp~nili~~~~~~kl~dfgl~~  160 (270)
T cd05047          81 GNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSR  160 (270)
T ss_pred             CcHHHHHHhccccccccccccccCCcCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccccceEEEcCCCeEEECCCCCcc
Confidence            99999986532              1247889999999999999999987        5699999999999999999986


Q ss_pred             e
Q 039406          226 I  226 (243)
Q Consensus       226 ~  226 (243)
                      .
T Consensus       161 ~  161 (270)
T cd05047         161 G  161 (270)
T ss_pred             c
Confidence            3

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=99.84  E-value=2.6e-20  Score=156.18  Aligned_cols=128  Identities=16%  Similarity=0.287  Sum_probs=112.2

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc-------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEecc
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK-------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFV  165 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~-------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~  165 (243)
                      .+|...+.||.|.||.||+++...+.             ...+.+.+|+.+++.++|+||+++++++...+.+|+||||+
T Consensus        19 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~   98 (296)
T cd06655          19 KKYTRYEKIGQGASGTVFTAIDVATGQEVAIKQINLQKQPKKELIINEILVMKELKNPNIVNFLDSFLVGDELFVVMEYL   98 (296)
T ss_pred             ceEEEEEEEecCCCeEEEEEEEcCCCcEEEEEEEecccCchHHHHHHHHHHHHhcCCCceeeeeeeEecCceEEEEEEec
Confidence            46899999999999999999754432             13567889999999999999999999999999999999999


Q ss_pred             CCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          166 LNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       166 ~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      .+++|.+++...   .+++..++.++.+++.+|.|||.        +++||+++.++.+||+|||++..+..
T Consensus        99 ~~~~L~~~~~~~---~l~~~~~~~i~~~l~~al~~LH~~~i~H~dL~p~Nili~~~~~~kl~dfg~~~~~~~  167 (296)
T cd06655          99 AGGSLTDVVTET---CMDEAQIAAVCRECLQALEFLHANQVIHRDIKSDNVLLGMDGSVKLTDFGFCAQITP  167 (296)
T ss_pred             CCCcHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEccCccchhccc
Confidence            999999988643   48999999999999999999986        45899999999999999999887643

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=99.84  E-value=1.5e-20  Score=156.25  Aligned_cols=128  Identities=21%  Similarity=0.328  Sum_probs=110.8

Q ss_pred             CCCccceeeecCceEEEEEEecCCch---------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEec
Q 039406          100 GFSDANLLRQDGFGYVHRGVLPNGKE---------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEF  164 (243)
Q Consensus       100 ~~~~~~~lg~G~~g~V~~~~~~~~~~---------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  164 (243)
                      +|+..+.||.|+||.||+|+...+..               ....+.+|+++|++++|+||+++++++.+.+..++||||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~   80 (284)
T cd07860           1 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEF   80 (284)
T ss_pred             CceeeeeecCCCceEEEEEEECCCCCEEEEEEccccccccccchHHHHHHHHHHhcCCCCCcchhhhcccCCcEEEEeec
Confidence            47888999999999999998654321               235688999999999999999999999999999999999


Q ss_pred             cCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          165 VLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       165 ~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      +. ++|.+++.......+++..++.++.+++.||.|||.        +++||+++.++.+||+|||+++.+.
T Consensus        81 ~~-~~l~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~i~H~~l~p~nill~~~~~~~l~dfg~~~~~~  151 (284)
T cd07860          81 LH-QDLKKFMDASPLSGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFG  151 (284)
T ss_pred             cc-cCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEEeeccchhhcc
Confidence            95 589888866544568999999999999999999987        3589999999999999999988654

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=99.84  E-value=1.5e-20  Score=160.57  Aligned_cols=130  Identities=25%  Similarity=0.360  Sum_probs=108.2

Q ss_pred             CCCCccceeeecCceEEEEEEecCC-------------------chhHHHHHHHHHHHHhc-CCCccceEEEEEEe-CCe
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNG-------------------KEGEREFQAEVEIISRV-HHKHLVSLVGYYTA-GSQ  157 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~-------------------~~~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~-~~~  157 (243)
                      ++|++.+.||+|+||.||+|+....                   ....+.+.+|+.++.++ +|+||+++++++.. +..
T Consensus         7 ~~~~i~~~lG~G~fg~Vy~a~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~~~~l~~h~niv~~~~~~~~~~~~   86 (337)
T cd05054           7 DRLKLGKPLGRGAFGKVIQASAFGIEKSASCRTVAVKMLKEGATASEYKALMTELKILIHIGHHLNVVNLLGACTKPGGP   86 (337)
T ss_pred             HHhhhhcccccCcCceEEeccccccccccccceeeeeeccCCCCHHHHHHHHHHHHHHHhhccCcchhheeeeEecCCCC
Confidence            5789999999999999999864321                   11234677899999999 89999999998764 457


Q ss_pred             eEEEEeccCCCCHHHHhccCCC----------------------------------------------------------
Q 039406          158 RMLVYEFVLNNTLVFHLHGKGQ----------------------------------------------------------  179 (243)
Q Consensus       158 ~~lv~e~~~~g~L~~~l~~~~~----------------------------------------------------------  179 (243)
                      ++++|||+.+++|.+++.....                                                          
T Consensus        87 ~~~v~ey~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (337)
T cd05054          87 LMVIVEYCKFGNLSNYLRSKRECFSPYRNKSTRKREMKQKEGKKQRLDSVSSSQSSASSGFIEDKSLSDVEEDEEGDELY  166 (337)
T ss_pred             EEEEEecCCCCCHHHHHHhccccccccccccccccccccccccccccccCCccccccccccccCcchhhcccchhhhHHh
Confidence            8999999999999998854221                                                          


Q ss_pred             -CCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          180 -PTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       180 -~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                       ..+++..+..++.|++.||.|||.        +++|||++.++.+||+|||+++.+.
T Consensus       167 ~~~l~~~~~~~~~~qi~~aL~~lH~~~ivHrDikp~Nill~~~~~vkL~DfG~a~~~~  224 (337)
T cd05054         167 KEPLTLEDLISYSFQVARGMEFLASRKCIHRDLAARNILLSENNVVKICDFGLARDIY  224 (337)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCcceEEEeCCCcEEEeccccchhcc
Confidence             247889999999999999999987        5689999999999999999998764

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=99.84  E-value=2.9e-20  Score=157.12  Aligned_cols=125  Identities=18%  Similarity=0.290  Sum_probs=100.9

Q ss_pred             cceeeecCceEEEEEEecCCc-------------hhHHHHHHHHHHHHhcCCCccceEEEEEEe--CCeeEEEEeccCCC
Q 039406          104 ANLLRQDGFGYVHRGVLPNGK-------------EGEREFQAEVEIISRVHHKHLVSLVGYYTA--GSQRMLVYEFVLNN  168 (243)
Q Consensus       104 ~~~lg~G~~g~V~~~~~~~~~-------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~--~~~~~lv~e~~~~g  168 (243)
                      .++||+|+||.||+|+.+...             .....+.+|+.+|++++|+||+++++++..  +..+|+||||+.+ 
T Consensus         6 ~~~lG~G~~g~Vy~~~~~~~~~~~~~aiK~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~~~-   84 (317)
T cd07868           6 GCKVGRGTYGHVYKAKRKDGKDDRDYALKQIEGTGISMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDYAEH-   84 (317)
T ss_pred             ccccccCCCeEEEEEEEccCCCCceEEEEEECCCCCcHHHHHHHHHHHhcCCCCCcceeeeEecCCCcEEEEEEeccCC-
Confidence            468999999999999865321             123467889999999999999999998864  4568999999954 


Q ss_pred             CHHHHhccC-------CCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEE----CCCCcEEEeccCCceecCC
Q 039406          169 TLVFHLHGK-------GQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILL----DFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       169 ~L~~~l~~~-------~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl----~~~~~~kl~DFG~a~~~~~  229 (243)
                      +|.+++...       ....+++..++.++.|++.||.|||.        ||+|||+    +.++.+||+|||+|+.+..
T Consensus        85 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~ivHrDlkp~Nil~~~~~~~~~~~kl~DfG~a~~~~~  164 (317)
T cd07868          85 DLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNS  164 (317)
T ss_pred             CHHHHHHhcccccccCCcccCCHHHHHHHHHHHHHHHHHHHhCCEEcCCCCHHHEEEecCCCCcCcEEEeecCceeccCC
Confidence            888776432       12247888999999999999999986        5689999    4567999999999987654

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=99.84  E-value=3.5e-20  Score=153.29  Aligned_cols=129  Identities=22%  Similarity=0.322  Sum_probs=113.6

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc--------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEec
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK--------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEF  164 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~--------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  164 (243)
                      ++|...+.||.|+||.||+++...+.              .....+.+|+.+++.++|+||+++++++.++...|+|+||
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~   80 (274)
T cd06609           1 ELFTLLECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEAEDEIEDIQQEIQFLSQCRSPYITKYYGSFLKGSKLWIIMEY   80 (274)
T ss_pred             ChhhhhhhhcCCCCeEEEEEEECCCCeEEEEEEeeccccchHHHHHHHHHHHHHHcCCCCeeeeeEEEEECCeEEEEEEe
Confidence            46888899999999999999865432              2345678999999999999999999999999999999999


Q ss_pred             cCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          165 VLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       165 ~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      +.+++|.+++...   .+++..++.++.|++.+|.|||.        +++||+++.++.++|+|||+++.+...
T Consensus        81 ~~~~~L~~~~~~~---~~~~~~~~~~~~ql~~~l~~lh~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~  151 (274)
T cd06609          81 CGGGSCLDLLKPG---KLDETYIAFILREVLLGLEYLHEEGKIHRDIKAANILLSEEGDVKLADFGVSGQLTST  151 (274)
T ss_pred             eCCCcHHHHHhhc---CCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEEcccccceeeccc
Confidence            9999999998754   48999999999999999999987        358999999999999999999887643

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.84  E-value=2.9e-20  Score=152.21  Aligned_cols=123  Identities=27%  Similarity=0.331  Sum_probs=106.0

Q ss_pred             ceeeecCceEEEEEEecCCc----------------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEE
Q 039406          105 NLLRQDGFGYVHRGVLPNGK----------------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVY  162 (243)
Q Consensus       105 ~~lg~G~~g~V~~~~~~~~~----------------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  162 (243)
                      +.||+|+||.||++.+....                      .....+.+|+.+|++++|+||+++++++.. ...++||
T Consensus         1 ~~lg~G~~~~v~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~lv~   79 (259)
T cd05037           1 EHLGQGTFTNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDHRDSLAFFETASLMSQLSHKHLVKLYGVCVR-DENIMVE   79 (259)
T ss_pred             CcccccccceEEEEEEeccCCccccCCccceeeeeeccccchhhHHHHHHHHHHHHcCCCcchhheeeEEec-CCcEEEE
Confidence            46999999999999876433                      014578889999999999999999999888 7789999


Q ss_pred             eccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCC-------cEEEeccCCceec
Q 039406          163 EFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKF-------EAKVADFGLAKIA  227 (243)
Q Consensus       163 e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~-------~~kl~DFG~a~~~  227 (243)
                      ||+.+++|.+++..... .+++..++.++.|++.||.|||.        +++|||++.++       .+||+|||++...
T Consensus        80 e~~~~~~L~~~l~~~~~-~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dlkp~Nill~~~~~~~~~~~~~kl~Dfg~a~~~  158 (259)
T cd05037          80 EYVKFGPLDVFLHREKN-NVSLHWKLDVAKQLASALHYLEDKKLVHGNVCGKNILVARYGLNEGYVPFIKLSDPGIPITV  158 (259)
T ss_pred             EcCCCCcHHHHHHhhcc-CCCHHHHHHHHHHHHHHHHHHhhCCeecccCccceEEEecCccccCCceeEEeCCCCccccc
Confidence            99999999999876543 58899999999999999999987        56999999887       7999999999875


Q ss_pred             CC
Q 039406          228 SD  229 (243)
Q Consensus       228 ~~  229 (243)
                      ..
T Consensus       159 ~~  160 (259)
T cd05037         159 LS  160 (259)
T ss_pred             cc
Confidence            43

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=99.84  E-value=9.4e-21  Score=155.29  Aligned_cols=128  Identities=24%  Similarity=0.291  Sum_probs=113.0

Q ss_pred             CCCccceeeecCceEEEEEEecCCc----------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEe
Q 039406          100 GFSDANLLRQDGFGYVHRGVLPNGK----------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYE  163 (243)
Q Consensus       100 ~~~~~~~lg~G~~g~V~~~~~~~~~----------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e  163 (243)
                      +|++.+.||.|+||.||++....+.                ...+.+.+|++++++++|+||+++++++...+..|+|||
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   80 (258)
T cd05578           1 HFELLRVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQELNHPFLVNLWYSFQDEENMYLVVD   80 (258)
T ss_pred             CceEEEEeccCCCceEEEEEEccCCcEEEEEEEehhhhcchhHHHHHHHHHHHHHhCCCCChHHHHHhhcCCCeEEEEEe
Confidence            4788999999999999999876422                235678899999999999999999999999999999999


Q ss_pred             ccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          164 FVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       164 ~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      |+.+++|.+++...  ..+.+..+..++.+++.+|.|||.        +++||++++++.++|+|||++.....
T Consensus        81 ~~~~~~L~~~l~~~--~~l~~~~~~~~~~~i~~~l~~lh~~~i~h~dl~~~nil~~~~~~~~l~d~~~~~~~~~  152 (258)
T cd05578          81 LLLGGDLRYHLSQK--VKFSEEQVKFWICEIVLALEYLHSKGIIHRDIKPDNILLDEQGHVHITDFNIATKVTP  152 (258)
T ss_pred             CCCCCCHHHHHHhc--CCcCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeEEcCCCCEEEeecccccccCC
Confidence            99999999999765  258899999999999999999987        45899999999999999999987644

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=99.84  E-value=4.8e-20  Score=150.59  Aligned_cols=130  Identities=26%  Similarity=0.397  Sum_probs=113.2

Q ss_pred             CCccceeeecCceEEEEEEecCCc----h--------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEE
Q 039406          101 FSDANLLRQDGFGYVHRGVLPNGK----E--------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVY  162 (243)
Q Consensus       101 ~~~~~~lg~G~~g~V~~~~~~~~~----~--------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  162 (243)
                      |.+.+.||.|+||.||++......    .              ..+.+.+|+.+|+.++|+||+++++++.+.+..|++|
T Consensus         1 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~i~   80 (258)
T smart00219        1 LTLGKKLGEGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDADEQQIEEFLREARIMRKLDHPNIVKLLGVCTEEEPLMIVM   80 (258)
T ss_pred             CcccceeccCCCcceEEEEecCCCCCCCceEEEEEccCCCChHHHHHHHHHHHHHHhcCCCchheEEEEEcCCCeeEEEE
Confidence            456789999999999999876532    1              3567889999999999999999999999999999999


Q ss_pred             eccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          163 EFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       163 e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      ||+.+++|.+++.......+++..+..++.|++.+|.|||.        +++||+++.++.+||+|||+++.....
T Consensus        81 e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lh~~~~~h~dl~~~nil~~~~~~~~l~dfg~~~~~~~~  156 (258)
T smart00219       81 EYMEGGDLLDYLRKNRPKELSLSDLLSFALQIARGMEYLESKNFIHRDLAARNCLVGENLVVKISDFGLSRDLYDD  156 (258)
T ss_pred             eccCCCCHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHhcCCeeecccccceEEEccCCeEEEcccCCceecccc
Confidence            99999999999976543238999999999999999999987        468999999999999999999877543

Phosphotransferases. Tyrosine-specific kinase subfamily.

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.84  E-value=4.8e-21  Score=164.35  Aligned_cols=142  Identities=15%  Similarity=0.145  Sum_probs=117.2

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCc---------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEE
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGK---------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVY  162 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~---------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  162 (243)
                      .+-|...+.||+|-|.+|-++++--+.               .....+..|++.|+-++|||||+||++..+...+|||+
T Consensus        17 AGLYDLekTlG~GHFAVVKLArHVFTGekVAVKviDKTKlD~~st~hlfqEVRCMKLVQHpNiVRLYEViDTQTKlyLiL   96 (864)
T KOG4717|consen   17 AGLYDLEKTLGRGHFAVVKLARHVFTGEKVAVKVIDKTKLDTLSTGHLFQEVRCMKLVQHPNIVRLYEVIDTQTKLYLIL   96 (864)
T ss_pred             eeeehhhhhhcCCceehhhhhhhhcccceeEEEEecccccchhhhhHHHHHHHHHHHhcCcCeeeeeehhcccceEEEEE
Confidence            355778889999999998777533221               13456788999999999999999999999999999999


Q ss_pred             eccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEE-CCCCcEEEeccCCceecCCCCce
Q 039406          163 EFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILL-DFKFEAKVADFGLAKIASDVNTH  233 (243)
Q Consensus       163 e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl-~~~~~~kl~DFG~a~~~~~~~~~  233 (243)
                      |+-++|+|+++|-+... .+.+..+..++.||++|+.|||.        ||+||++ .+-|.|||+||||+..+..... 
T Consensus        97 ELGD~GDl~DyImKHe~-Gl~E~La~kYF~QI~~AI~YCHqLHVVHRDLKPENVVFFEKlGlVKLTDFGFSNkf~PG~k-  174 (864)
T KOG4717|consen   97 ELGDGGDLFDYIMKHEE-GLNEDLAKKYFAQIVHAISYCHQLHVVHRDLKPENVVFFEKLGLVKLTDFGFSNKFQPGKK-  174 (864)
T ss_pred             EecCCchHHHHHHhhhc-cccHHHHHHHHHHHHHHHHHHhhhhhhcccCCcceeEEeeecCceEeeeccccccCCCcch-
Confidence            99999999999976654 49999999999999999999976        6799886 5569999999999998865543 


Q ss_pred             eeecccccc
Q 039406          234 VSTRVMGTF  242 (243)
Q Consensus       234 ~~~~~~GT~  242 (243)
                       -++.||++
T Consensus       175 -L~TsCGSL  182 (864)
T KOG4717|consen  175 -LTTSCGSL  182 (864)
T ss_pred             -hhcccchh
Confidence             23456764

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=99.84  E-value=2.7e-20  Score=160.51  Aligned_cols=128  Identities=19%  Similarity=0.261  Sum_probs=107.0

Q ss_pred             HhCCCCccceeeecCceEEEEEEecCCc---------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeC------
Q 039406           97 ATDGFSDANLLRQDGFGYVHRGVLPNGK---------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAG------  155 (243)
Q Consensus        97 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~---------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~------  155 (243)
                      ..++|...+.||+|+||.||++......               ...+.+.+|+.+++.++|+||+++++++...      
T Consensus        22 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~~~~~~~  101 (364)
T cd07875          22 VLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEF  101 (364)
T ss_pred             hhcceeEEEEeecCCCeEEEEEEECCCCcEEEEEEeCccccCchhHHHHHHHHHHHHhcCCCCccccceeeccccccccc
Confidence            3578999999999999999999754432               2345678899999999999999999987543      


Q ss_pred             CeeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceec
Q 039406          156 SQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIA  227 (243)
Q Consensus       156 ~~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~  227 (243)
                      ..+|+||||+.+ +|.+++..    .+++..+..++.|++.||.|||.        +++|||++.++.+||+|||+++..
T Consensus       102 ~~~~lv~e~~~~-~l~~~~~~----~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~  176 (364)
T cd07875         102 QDVYIVMELMDA-NLCQVIQM----ELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTA  176 (364)
T ss_pred             CeEEEEEeCCCC-CHHHHHHh----cCCHHHHHHHHHHHHHHHHHHhhCCeecCCCCHHHEEECCCCcEEEEeCCCcccc
Confidence            357999999965 77777643    37888999999999999999986        468999999999999999999876


Q ss_pred             CC
Q 039406          228 SD  229 (243)
Q Consensus       228 ~~  229 (243)
                      ..
T Consensus       177 ~~  178 (364)
T cd07875         177 GT  178 (364)
T ss_pred             CC
Confidence            44

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=99.84  E-value=5.1e-20  Score=152.06  Aligned_cols=127  Identities=22%  Similarity=0.343  Sum_probs=109.9

Q ss_pred             CCCccceeeecCceEEEEEEecCCch-----------------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCC
Q 039406          100 GFSDANLLRQDGFGYVHRGVLPNGKE-----------------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGS  156 (243)
Q Consensus       100 ~~~~~~~lg~G~~g~V~~~~~~~~~~-----------------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~  156 (243)
                      +|...+.||.|+||.||+|....+.+                       ..+.+.+|+.+|++++|+||+++++++...+
T Consensus         2 ~~~~~~~lg~g~~~~vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   81 (272)
T cd06629           2 KWVKGELIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHLNIVQYLGFETTEE   81 (272)
T ss_pred             ceeecceecccCceEEEEEeecCCCceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhcCCCCcceEEEEeccCC
Confidence            46778899999999999997543211                       1245778999999999999999999999999


Q ss_pred             eeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          157 QRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       157 ~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      .+++||||+.+++|.+++...+  .+++..++.++.+++.+|.|||.        +++||+++.++.+||+|||+++...
T Consensus        82 ~~~lv~e~~~~~~L~~~l~~~~--~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~~~nil~~~~~~~~l~d~~~~~~~~  159 (272)
T cd06629          82 YLSIFLEYVPGGSIGSCLRTYG--RFEEQLVRFFTEQVLEGLAYLHSKGILHRDLKADNLLVDADGICKISDFGISKKSD  159 (272)
T ss_pred             ceEEEEecCCCCcHHHHHhhcc--CCCHHHHHHHHHHHHHHHHHHhhCCeeecCCChhhEEEcCCCeEEEeecccccccc
Confidence            9999999999999999987653  48889999999999999999987        3589999999999999999998654

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=99.84  E-value=2.4e-20  Score=153.49  Aligned_cols=128  Identities=21%  Similarity=0.319  Sum_probs=110.5

Q ss_pred             CCCccceeeecCceEEEEEEecCCch-------------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEE
Q 039406          100 GFSDANLLRQDGFGYVHRGVLPNGKE-------------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRML  160 (243)
Q Consensus       100 ~~~~~~~lg~G~~g~V~~~~~~~~~~-------------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~l  160 (243)
                      +|...+.||+|+||.||++....+.+                   ..+.+.+|+++|++++|+||+++++++.+.+..++
T Consensus         1 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~   80 (268)
T cd06630           1 EWLKGQQLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIRMLGATCEDSHFNL   80 (268)
T ss_pred             CccccceecCcCceEEEEEEEcCCCcEEEEEEeecccCCchhHHHHHHHHHHHHHHHHHcCCCceehhhceeccCCeEEE
Confidence            47788999999999999997543311                   24678899999999999999999999999999999


Q ss_pred             EEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCC-cEEEeccCCceecCC
Q 039406          161 VYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKF-EAKVADFGLAKIASD  229 (243)
Q Consensus       161 v~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~-~~kl~DFG~a~~~~~  229 (243)
                      ||||+.+++|.+++...+  .+++..++.++.|++.||.|||.        +++||+++.++ .+||+|||++..+..
T Consensus        81 v~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~ql~~al~~LH~~~i~H~~i~~~nil~~~~~~~~~l~dfg~~~~~~~  156 (268)
T cd06630          81 FVEWMAGGSVSHLLSKYG--AFKEAVIINYTEQLLRGLSYLHENQIIHRDVKGANLLIDSTGQRLRIADFGAAARLAA  156 (268)
T ss_pred             EEeccCCCcHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEEccccccccccc
Confidence            999999999999987544  48899999999999999999987        45899998775 699999999987653

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=99.84  E-value=5.4e-20  Score=151.63  Aligned_cols=128  Identities=22%  Similarity=0.315  Sum_probs=109.6

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc------------------hhHHHHHHHHHHHHhcCCCccceEEEEEEe--CCee
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK------------------EGEREFQAEVEIISRVHHKHLVSLVGYYTA--GSQR  158 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~------------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~--~~~~  158 (243)
                      .+|...+.||+|+||.||++....+.                  +..+.+.+|+.+|++++|+||+++++++..  .+.+
T Consensus         2 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   81 (266)
T cd06651           2 INWRRGKLLGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERIVQYYGCLRDRAEKTL   81 (266)
T ss_pred             CCccccceecCCCCEEEEEEEEcCCCcEEEEEEeecCcCCchhHHHHHHHHHHHHHHHHcCCCCeeeEEEEEEcCCCCEE
Confidence            47889999999999999999754421                  124568889999999999999999998875  3678


Q ss_pred             EEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          159 MLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       159 ~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      +++|||+.+++|.+++....  .+++...+.++.|++.+|.|||.        +++||+++.++.+||+|||+++.+.
T Consensus        82 ~l~~e~~~~~~L~~~l~~~~--~l~~~~~~~~~~qi~~~l~~LH~~~i~H~~l~p~nil~~~~~~~~l~dfg~~~~~~  157 (266)
T cd06651          82 TIFMEYMPGGSVKDQLKAYG--ALTESVTRKYTRQILEGMSYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKRLQ  157 (266)
T ss_pred             EEEEeCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEECCCCCEEEccCCCccccc
Confidence            99999999999999987544  48888999999999999999987        4589999999999999999998653

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=99.84  E-value=3.5e-20  Score=153.71  Aligned_cols=122  Identities=27%  Similarity=0.357  Sum_probs=105.9

Q ss_pred             eeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccCCCCH
Q 039406          107 LRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTL  170 (243)
Q Consensus       107 lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~g~L  170 (243)
                      ||+|+||.||+|....+.+                ....+.+|+++|++++|+||+++++++...+..|+||||+++++|
T Consensus         1 lg~g~~g~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (277)
T cd05577           1 LGKGGFGEVCACQVKATGKMYACKKLDKKRLKKRKGEQMALNEKKILEKVSSRFIVSLAYAFETKDDLCLVMTLMNGGDL   80 (277)
T ss_pred             CCCCCceeEEEEEEcCCCcEEEEEEEehhhhhhhhhhHHHHHHHHHHHhCCCCCEeeeeeEEecCCeEEEEEecCCCCcH
Confidence            6899999999997654321                234567899999999999999999999999999999999999999


Q ss_pred             HHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          171 VFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       171 ~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      .+++.......+++..++.++.|++.+|.|||.        +++|||++.++.+||+|||++..+.
T Consensus        81 ~~~l~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~~i~H~di~p~Nil~~~~~~~~l~dfg~~~~~~  146 (277)
T cd05577          81 KYHIYNVGEPGFPEARAIFYAAQIICGLEHLHQRRIVYRDLKPENVLLDDHGNVRISDLGLAVELK  146 (277)
T ss_pred             HHHHHHcCcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEEccCcchhhhc
Confidence            999876554468999999999999999999987        4589999999999999999998654

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.84  E-value=1.6e-21  Score=163.45  Aligned_cols=141  Identities=25%  Similarity=0.312  Sum_probs=117.5

Q ss_pred             CCCCccceeeecCceEEEEEEecCCchh----------------HHHHHHHHHHHHhc-CCCccceEEEEEEeCCeeEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKEG----------------EREFQAEVEIISRV-HHKHLVSLVGYYTAGSQRMLV  161 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~----------------~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~~~lv  161 (243)
                      .+|..+.+||+|+||+|.++..+.+.+.                .+--+.|-++|.-. +-|.+++++.+|.+-+++|+|
T Consensus       349 tDFnFl~VlGKGSFGKVlLaerkgtdELyAiKiLkKDViiQdDDvectm~EKrvLAL~~kppFL~qlHScFQTmDRLyFV  428 (683)
T KOG0696|consen  349 TDFNFLMVLGKGSFGKVLLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLVQLHSCFQTMDRLYFV  428 (683)
T ss_pred             cccceEEEeccCccceeeeecccCcchhhhhhhhccceeeecCcccceehhhhheecCCCCchHHHHHHHhhhhhheeeE
Confidence            5799999999999999999987776541                22234466666655 578999999999999999999


Q ss_pred             EeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCce
Q 039406          162 YEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNTH  233 (243)
Q Consensus       162 ~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~~  233 (243)
                      |||+.||+|.-.|.+-++  +.+..+..++.+|+-||-|||.        |++|||+|.+|++||+|||+++.-.-+.. 
T Consensus       429 MEyvnGGDLMyhiQQ~Gk--FKEp~AvFYAaEiaigLFFLh~kgIiYRDLKLDNvmLd~eGHiKi~DFGmcKEni~~~~-  505 (683)
T KOG0696|consen  429 MEYVNGGDLMYHIQQVGK--FKEPVAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIFDGV-  505 (683)
T ss_pred             EEEecCchhhhHHHHhcc--cCCchhhhhhHHHHHHhhhhhcCCeeeeeccccceEeccCCceEeeecccccccccCCc-
Confidence            999999999999987664  8888999999999999999998        56999999999999999999986543332 


Q ss_pred             eeecccccc
Q 039406          234 VSTRVMGTF  242 (243)
Q Consensus       234 ~~~~~~GT~  242 (243)
                      .+.++||||
T Consensus       506 TTkTFCGTP  514 (683)
T KOG0696|consen  506 TTKTFCGTP  514 (683)
T ss_pred             ceeeecCCC
Confidence            344689997

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=99.84  E-value=5.9e-20  Score=150.75  Aligned_cols=129  Identities=26%  Similarity=0.298  Sum_probs=112.5

Q ss_pred             CCCccceeeecCceEEEEEEecCCc---------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEec
Q 039406          100 GFSDANLLRQDGFGYVHRGVLPNGK---------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEF  164 (243)
Q Consensus       100 ~~~~~~~lg~G~~g~V~~~~~~~~~---------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  164 (243)
                      +|...+.||+|+||.||++....+.               ...+.+.+|+.++++++|+||+++++++...+..++|+||
T Consensus         1 ~y~~~~~lg~G~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~lv~e~   80 (264)
T cd06626           1 RWQRGNKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNLVKYYGVEVHREKVYIFMEY   80 (264)
T ss_pred             CceeeeEeecCCCcEEEEEEECCCCcEEEEEEEECcccchHHHHHHHHHHHHHHhCCCCChhheeeeEecCCEEEEEEec
Confidence            4778899999999999999754321               2467788999999999999999999999999999999999


Q ss_pred             cCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          165 VLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       165 ~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      +++++|.+++....  .+++..+..++.+++.||.|||.        +++||+++.++.+||+|||++......
T Consensus        81 ~~~~~L~~~~~~~~--~~~~~~~~~i~~~i~~~l~~lh~~~i~H~dl~~~nil~~~~~~~kl~d~g~~~~~~~~  152 (264)
T cd06626          81 CSGGTLEELLEHGR--ILDEHVIRVYTLQLLEGLAYLHSHGIVHRDIKPANIFLDHNGVIKLGDFGCAVKLKNN  152 (264)
T ss_pred             CCCCcHHHHHhhcC--CCChHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEcccccccccCCC
Confidence            99999999987543  47888999999999999999987        347999999999999999999887543

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=99.84  E-value=6.2e-20  Score=152.23  Aligned_cols=128  Identities=24%  Similarity=0.385  Sum_probs=111.6

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc--------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEec
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK--------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEF  164 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~--------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  164 (243)
                      ..|...+.||.|+||.||+|.+..+.              .....+.+|+.++++++|+||+++++++.+++..|+||||
T Consensus         4 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   83 (277)
T cd06640           4 ELFTKLERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKGTKLWIIMEY   83 (277)
T ss_pred             HhhhhhhhcccCCCeEEEEEEEccCCEEEEEEEEeccccHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEEec
Confidence            35777889999999999999765432              2345788999999999999999999999999999999999


Q ss_pred             cCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          165 VLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       165 ~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      +.+++|.+++...   .+++..+..++.+++.+|.|||.        +++||+++.++.++|+|||++..+..
T Consensus        84 ~~~~~L~~~i~~~---~l~~~~~~~~~~~l~~~l~~lh~~~ivH~dl~p~Nil~~~~~~~~l~dfg~~~~~~~  153 (277)
T cd06640          84 LGGGSALDLLRAG---PFDEFQIATMLKEILKGLDYLHSEKKIHRDIKAANVLLSEQGDVKLADFGVAGQLTD  153 (277)
T ss_pred             CCCCcHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhCCccCcCCChhhEEEcCCCCEEEcccccceeccC
Confidence            9999999988643   48888999999999999999987        45899999999999999999987654

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.84  E-value=6.7e-20  Score=150.92  Aligned_cols=128  Identities=20%  Similarity=0.300  Sum_probs=109.6

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc------------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeC--Cee
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK------------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAG--SQR  158 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~------------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~--~~~  158 (243)
                      .+|.+.+.||+|+||.||++....+.                  +....+.+|++++++++|+||+++++++.+.  +.+
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~~   81 (264)
T cd06653           2 VNWRLGKLLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDRIVQYYGCLRDPEEKKL   81 (264)
T ss_pred             CceeeeeeEccCCCeEEEEEEEcCCCCEEEEEEEecCcccchhhHHHHHHHHHHHHHHHcCCCCcceEEEEEEcCCCCEE
Confidence            47889999999999999999754321                  2345788899999999999999999998764  468


Q ss_pred             EEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          159 MLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       159 ~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      ++||||+.+++|.+++...+  .+.+..++.++.+++.+|.|||.        +++||+++.++.+||+|||+++...
T Consensus        82 ~~v~e~~~~~~L~~~~~~~~--~l~~~~~~~~~~~i~~al~~LH~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~  157 (264)
T cd06653          82 SIFVEYMPGGSIKDQLKAYG--ALTENVTRRYTRQILQGVSYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKRIQ  157 (264)
T ss_pred             EEEEEeCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCEEECccccccccc
Confidence            89999999999999987544  37888999999999999999987        4589999999999999999998653

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=99.84  E-value=3.1e-20  Score=154.97  Aligned_cols=141  Identities=23%  Similarity=0.312  Sum_probs=117.4

Q ss_pred             cccHHHHHHHhCCCCccceeeecCceEEEEEEecCCch------------hHHHHHHHHHHHHhc-CCCccceEEEEEEe
Q 039406           88 TFTYEELARATDGFSDANLLRQDGFGYVHRGVLPNGKE------------GEREFQAEVEIISRV-HHKHLVSLVGYYTA  154 (243)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~------------~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~  154 (243)
                      .+.+.++....++|.+.+.||+|+||.||++....+.+            ....+.+|+.+++++ +|+||+++++++..
T Consensus        11 ~~~~~~~~~~~~~y~~~~~l~~g~~~~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~e~~~l~~l~~h~ni~~~~~~~~~   90 (291)
T cd06639          11 MLGLESLGDPTDTWEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDPISDVDEEIEAEYNILQSLPNHPNVVKFYGMFYK   90 (291)
T ss_pred             hhhcccCCCCCCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEecccccHHHHHHHHHHHHHHhcCCCCeEEEEEEEEe
Confidence            35556667778999999999999999999998754432            235677899999999 89999999999875


Q ss_pred             C-----CeeEEEEeccCCCCHHHHhccC--CCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEe
Q 039406          155 G-----SQRMLVYEFVLNNTLVFHLHGK--GQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVA  219 (243)
Q Consensus       155 ~-----~~~~lv~e~~~~g~L~~~l~~~--~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~  219 (243)
                      .     +..|+||||+++++|.+++...  ....+.+..++.++.|++.+|.|||.        +++||+++.++.+||+
T Consensus        91 ~~~~~~~~~~lv~ey~~~~sL~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dlkp~nili~~~~~~kl~  170 (291)
T cd06639          91 ADKLVGGQLWLVLELCNGGSVTELVKGLLICGQRLDEAMISYILYGALLGLQHLHNNRIIHRDVKGNNILLTTEGGVKLV  170 (291)
T ss_pred             ccccCCCeeEEEEEECCCCcHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEEcCCCCEEEe
Confidence            3     3689999999999999987531  22358899999999999999999987        4589999999999999


Q ss_pred             ccCCceecC
Q 039406          220 DFGLAKIAS  228 (243)
Q Consensus       220 DFG~a~~~~  228 (243)
                      |||+++.+.
T Consensus       171 dfg~~~~~~  179 (291)
T cd06639         171 DFGVSAQLT  179 (291)
T ss_pred             ecccchhcc
Confidence            999988754

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=99.84  E-value=4.6e-20  Score=151.05  Aligned_cols=124  Identities=27%  Similarity=0.369  Sum_probs=107.8

Q ss_pred             ceeeecCceEEEEEEecCC-c----------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccCC
Q 039406          105 NLLRQDGFGYVHRGVLPNG-K----------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLN  167 (243)
Q Consensus       105 ~~lg~G~~g~V~~~~~~~~-~----------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~  167 (243)
                      ++||+|+||.||++.+... .                ...+.+.+|+.+|++++|+||+++++++.. ...++||||+++
T Consensus         1 ~~ig~g~~~~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~~~~v~e~~~~   79 (257)
T cd05040           1 KKLGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLSDIMDDFLKEAAIMHSLDHENLIRLYGVVLT-HPLMMVTELAPL   79 (257)
T ss_pred             CcCCccCcccEEeeeEecCCCCceEEEEeecCCcccHHHHHHHHHHHHHHhhcCCCCccceeEEEcC-CeEEEEEEecCC
Confidence            4689999999999986541 1                235678899999999999999999999988 899999999999


Q ss_pred             CCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          168 NTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       168 g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      ++|.+++.......+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++.+..
T Consensus        80 ~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~di~p~nil~~~~~~~kl~dfg~~~~~~~  149 (257)
T cd05040          80 GSLLDRLRKDALGHFLISTLCDYAVQIANGMRYLESKRFIHRDLAARNILLASDDKVKIGDFGLMRALPQ  149 (257)
T ss_pred             CcHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHhCCccccccCcccEEEecCCEEEeccccccccccc
Confidence            999999976542358999999999999999999987        56899999999999999999988754

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=99.84  E-value=4.4e-20  Score=156.87  Aligned_cols=125  Identities=14%  Similarity=0.107  Sum_probs=106.6

Q ss_pred             ccceeeec--CceEEEEEEecCCch---------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEecc
Q 039406          103 DANLLRQD--GFGYVHRGVLPNGKE---------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFV  165 (243)
Q Consensus       103 ~~~~lg~G--~~g~V~~~~~~~~~~---------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~  165 (243)
                      +.++||+|  +|++||++..+.+.+               ..+.+.+|+.+++.++||||+++++++..++..|+||||+
T Consensus         2 ~~~~ig~G~~~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~   81 (327)
T cd08227           2 LLTVIGRGFEDLMTVNLARYKPTGEYVTVRRINLEACTNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWVVTSFM   81 (327)
T ss_pred             hhhhccccccceEEEEEEeecccCcEEEEEEechhhccHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEECCEEEEEEecc
Confidence            45789999  678999997665422               3356778999999999999999999999999999999999


Q ss_pred             CCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceec
Q 039406          166 LNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIA  227 (243)
Q Consensus       166 ~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~  227 (243)
                      ++|+|.+++.......+++..++.++.|++.||.|||.        +++|||++.++.++|+||+.+...
T Consensus        82 ~~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~iiH~dlkp~Nil~~~~~~~~l~~~~~~~~~  151 (327)
T cd08227          82 AYGSAKDLICTHFMDGMSELAIAYILQGVLKALDYIHHMGYVHRSVKASHILISVDGKVYLSGLRSNLSM  151 (327)
T ss_pred             CCCcHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCChhhEEEecCCcEEEcccchhhcc
Confidence            99999999865443458999999999999999999987        568999999999999999865443

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=99.84  E-value=7.3e-20  Score=150.02  Aligned_cols=123  Identities=28%  Similarity=0.447  Sum_probs=105.3

Q ss_pred             ceeeecCceEEEEEEecCCc-----------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccCC
Q 039406          105 NLLRQDGFGYVHRGVLPNGK-----------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLN  167 (243)
Q Consensus       105 ~~lg~G~~g~V~~~~~~~~~-----------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~  167 (243)
                      ++||+|+||.||+|++....                 ...+.+.+|+.+|++++|+||+++++++. .+..++||||+.+
T Consensus         1 ~~ig~G~~g~v~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~~v~e~~~~   79 (257)
T cd05060           1 KELGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIAAGKKEFLREASVMAQLDHPCIVRLIGVCK-GEPLMLVMELAPL   79 (257)
T ss_pred             CccCccCceeEEEeEeeccCCCcceEEEEecccccchHHHHHHHHHHHHHHhcCCCCeeeEEEEEc-CCceEEEEEeCCC
Confidence            47999999999999653322                 13457889999999999999999999876 4568999999999


Q ss_pred             CCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          168 NTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       168 g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      ++|.+++....  .+++..++.++.|++.+|.|||.        +++|||++.++.+||+|||+++.+...
T Consensus        80 ~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lh~~~i~H~di~p~nili~~~~~~kl~df~~~~~~~~~  148 (257)
T cd05060          80 GPLLKYLKKRR--EIPVSDLKELAHQVAMGMAYLESKHFVHRDLAARNVLLVNRHQAKISDFGMSRALGAG  148 (257)
T ss_pred             CcHHHHHHhCC--CCCHHHHHHHHHHHHHHHHHHhhcCeeccCcccceEEEcCCCcEEeccccccceeecC
Confidence            99999997654  58999999999999999999987        568999999999999999999876443

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=99.84  E-value=5.9e-20  Score=150.10  Aligned_cols=131  Identities=21%  Similarity=0.330  Sum_probs=112.6

Q ss_pred             CCCccceeeecCceEEEEEEecCCc---------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEec
Q 039406          100 GFSDANLLRQDGFGYVHRGVLPNGK---------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEF  164 (243)
Q Consensus       100 ~~~~~~~lg~G~~g~V~~~~~~~~~---------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  164 (243)
                      +|...+.||+|+||.||++....+.               .....+.+|+.+|++++|+||+++++.+..++..++||||
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~   80 (256)
T cd08220           1 KYEKIRVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMTKDERLAAQNECQVLKLLSHPNIIEYYENFLEDKALMIVMEY   80 (256)
T ss_pred             CceEEEEecccCceEEEEEEEcCCCcEEEEEEEeccccccHHHHHHHHHHHHHhhCCCCchhheeeeEecCCEEEEEEec
Confidence            4788899999999999998764332               2356788999999999999999999999999999999999


Q ss_pred             cCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCC-CcEEEeccCCceecCCC
Q 039406          165 VLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFK-FEAKVADFGLAKIASDV  230 (243)
Q Consensus       165 ~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~-~~~kl~DFG~a~~~~~~  230 (243)
                      +++++|.+++.......+++..++.++.+++.+|.|||.        +++||+++.+ +.+||+|||+++.....
T Consensus        81 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~i~h~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~  155 (256)
T cd08220          81 APGGTLAEYIQKRCNSLLDEDTILHFFVQILLALHHVHTKLILHRDLKTQNILLDKHKMVVKIGDFGISKILSSK  155 (256)
T ss_pred             CCCCCHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEEccCCCceecCCC
Confidence            999999999976554458999999999999999999986        4589999865 46899999999977543

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=99.84  E-value=1.5e-20  Score=156.27  Aligned_cols=128  Identities=22%  Similarity=0.297  Sum_probs=109.3

Q ss_pred             CCCccceeeecCceEEEEEEecCCch---------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEec
Q 039406          100 GFSDANLLRQDGFGYVHRGVLPNGKE---------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEF  164 (243)
Q Consensus       100 ~~~~~~~lg~G~~g~V~~~~~~~~~~---------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  164 (243)
                      +|...+.||+|+||.||+|+...+.+               ....+.+|+.++++++|+||+++++++.+.+.+|+||||
T Consensus         1 ~y~~~~~l~~g~~~~vy~~~~~~~g~~~~~k~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   80 (284)
T cd07839           1 KYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLYDVLHSDKKLTLVFEY   80 (284)
T ss_pred             CceeEEEecccCCeEEEEEEECCCCcEEEEEEeecccccccCccchhHHHHHHHhcCCCCeeeHHHHhccCCceEEEEec
Confidence            47788999999999999998754321               234577899999999999999999999999999999999


Q ss_pred             cCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          165 VLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       165 ~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      +.+ +|.+++..... .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++.+..
T Consensus        81 ~~~-~l~~~~~~~~~-~~~~~~~~~~~~qi~~al~~LH~~~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~  151 (284)
T cd07839          81 CDQ-DLKKYFDSCNG-DIDPEIVKSFMFQLLKGLAFCHSHNVLHRDLKPQNLLINKNGELKLADFGLARAFGI  151 (284)
T ss_pred             CCC-CHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEEcCCCcEEECccchhhccCC
Confidence            975 78777754333 48999999999999999999987        45899999999999999999987643

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=99.83  E-value=3.8e-20  Score=154.24  Aligned_cols=131  Identities=24%  Similarity=0.411  Sum_probs=111.4

Q ss_pred             hCCCCccceeeecCceEEEEEEecC-----C--------------chhHHHHHHHHHHHHhcCCCccceEEEEEEeCCee
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPN-----G--------------KEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQR  158 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~-----~--------------~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~  158 (243)
                      .++|...+.||+|+||.||++....     .              ......+.+|+.++++++|+||+++++++..++..
T Consensus         4 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~ei~~l~~l~h~~iv~~~~~~~~~~~~   83 (288)
T cd05050           4 RNNIEYVRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDHPNIVKLLGVCAVGKPM   83 (288)
T ss_pred             hHhceecccccccccccEEEEEEcccCCCCcceeEEEEecCCCcCHHHHHHHHHHHHHHHhcCCCchheEEEEEcCCCcc
Confidence            3679999999999999999987532     0              11346688999999999999999999999999999


Q ss_pred             EEEEeccCCCCHHHHhccCC--------------------CCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEE
Q 039406          159 MLVYEFVLNNTLVFHLHGKG--------------------QPTMDWPTRIKIALGSAKGLAYLHD--------DLANILL  210 (243)
Q Consensus       159 ~lv~e~~~~g~L~~~l~~~~--------------------~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl  210 (243)
                      |+||||+.+++|.+++....                    ...+++..++.++.+++.+|.|||.        +++|||+
T Consensus        84 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~aL~~lH~~~i~H~dl~p~nil~  163 (288)
T cd05050          84 CLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSCTEQLCIAKQVAAGMAYLSERKFVHRDLATRNCLV  163 (288)
T ss_pred             EEEEecCCCCCHHHHHHHcCccccccccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhCCeecccccHhheEe
Confidence            99999999999999986421                    1236788889999999999999987        4689999


Q ss_pred             CCCCcEEEeccCCceecC
Q 039406          211 DFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       211 ~~~~~~kl~DFG~a~~~~  228 (243)
                      +.++.+||+|||+++.+.
T Consensus       164 ~~~~~~~l~dfg~~~~~~  181 (288)
T cd05050         164 GENMVVKIADFGLSRNIY  181 (288)
T ss_pred             cCCCceEECccccceecc
Confidence            999999999999998653

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=99.83  E-value=1.8e-20  Score=155.31  Aligned_cols=127  Identities=25%  Similarity=0.383  Sum_probs=110.4

Q ss_pred             CCCccceeeecCceEEEEEEecCCc--------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEecc
Q 039406          100 GFSDANLLRQDGFGYVHRGVLPNGK--------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFV  165 (243)
Q Consensus       100 ~~~~~~~lg~G~~g~V~~~~~~~~~--------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~  165 (243)
                      .|...+.||+|+||.||+|.+..+.              ...+.+.+|++++++++|+||+++++++..++..|+||||+
T Consensus         5 ~y~~~~~l~~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   84 (277)
T cd06642           5 LFTKLERIGKGSFGEVYKGIDNRTKEVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYITRYYGSYLKGTKLWIIMEYL   84 (277)
T ss_pred             HHHHHHHhcCCCCeeEEEEEEcCCCeEEEEEEeccccchHHHHHHHHHHHHHHcCCCCccHhhhcccccCCceEEEEEcc
Confidence            4666788999999999999764432              23456889999999999999999999999999999999999


Q ss_pred             CCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          166 LNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       166 ~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      .+++|.+++...   .+.+..++.++.+++.+|.|||.        +++||++++++.+||+|||++..+..
T Consensus        85 ~~~~L~~~~~~~---~~~~~~~~~~~~~i~~~l~~lH~~~ivH~dl~p~ni~i~~~~~~~l~dfg~~~~~~~  153 (277)
T cd06642          85 GGGSALDLLKPG---PLEETYIATILREILKGLDYLHSERKIHRDIKAANVLLSEQGDVKLADFGVAGQLTD  153 (277)
T ss_pred             CCCcHHHHhhcC---CCCHHHHHHHHHHHHHHHHHHhcCCeeccCCChheEEEeCCCCEEEccccccccccC
Confidence            999999988542   48899999999999999999986        45899999999999999999987654

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=99.83  E-value=5.2e-20  Score=153.53  Aligned_cols=130  Identities=24%  Similarity=0.250  Sum_probs=109.2

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc--------------hhHHHHHHHHHHHHhcCCCccceEEEEEEe--CCeeEEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK--------------EGEREFQAEVEIISRVHHKHLVSLVGYYTA--GSQRMLVY  162 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~--------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~--~~~~~lv~  162 (243)
                      ++|...+.||.|.+|.||++.+..+.              .....+.+|+++|++++|+||++++++|.+  .+.+|+||
T Consensus         1 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~   80 (287)
T cd06621           1 EKIVELSRLGEGAGGSVTKCRLKNTGMIFALKTITTDPNPDLQKQILRELEINKSCKSPYIVKYYGAFLDESSSSIGIAM   80 (287)
T ss_pred             CceEEEEEeccCCceEEEEEEECCCCeEEEEEEEecCCchHHHHHHHHHHHHHHhCCCCCeeeeeeEEEccCCCeEEEEE
Confidence            46888999999999999999875432              135678999999999999999999998864  34789999


Q ss_pred             eccCCCCHHHHhccC--CCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          163 EFVLNNTLVFHLHGK--GQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       163 e~~~~g~L~~~l~~~--~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      ||+++++|.+++...  ....+++..+..++.+++.+|.|||.        +++||+++.++.+||+|||++....
T Consensus        81 e~~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~lH~~~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~  156 (287)
T cd06621          81 EYCEGGSLDSIYKKVKKRGGRIGEKVLGKIAESVLKGLSYLHSRKIIHRDIKPSNILLTRKGQVKLCDFGVSGELV  156 (287)
T ss_pred             EecCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEecCCeEEEeecccccccc
Confidence            999999998876531  22347888999999999999999986        4589999999999999999987653

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=99.83  E-value=6.2e-20  Score=154.91  Aligned_cols=125  Identities=18%  Similarity=0.300  Sum_probs=100.7

Q ss_pred             cceeeecCceEEEEEEecCCch-------------hHHHHHHHHHHHHhcCCCccceEEEEEEe--CCeeEEEEeccCCC
Q 039406          104 ANLLRQDGFGYVHRGVLPNGKE-------------GEREFQAEVEIISRVHHKHLVSLVGYYTA--GSQRMLVYEFVLNN  168 (243)
Q Consensus       104 ~~~lg~G~~g~V~~~~~~~~~~-------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~--~~~~~lv~e~~~~g  168 (243)
                      ..+||+|+||.||+|+.+....             ....+.+|+.+|++++|+||+++++++..  +..+|+||||+.+ 
T Consensus         6 g~~lG~G~~g~Vy~~~~~~~~~~~~~a~k~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~~~-   84 (317)
T cd07867           6 GCKVGRGTYGHVYKAKRKDGKDEKEYALKQIEGTGISMSACREIALLRELKHPNVIALQKVFLSHSDRKVWLLFDYAEH-   84 (317)
T ss_pred             ceEeccCCCeeEEEEEecCCCccceEEEEEecCCCCcHHHHHHHHHHHhCCCCCeeeEEEEEeccCCCeEEEEEeeeCC-
Confidence            4689999999999998654321             23467889999999999999999998853  5678999999965 


Q ss_pred             CHHHHhccC-------CCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEE----CCCCcEEEeccCCceecCC
Q 039406          169 TLVFHLHGK-------GQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILL----DFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       169 ~L~~~l~~~-------~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl----~~~~~~kl~DFG~a~~~~~  229 (243)
                      +|.+++...       ....+++..++.++.|++.||.|||.        +|+|||+    +.++.+||+|||+++.+..
T Consensus        85 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~~kl~DfG~a~~~~~  164 (317)
T cd07867          85 DLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNS  164 (317)
T ss_pred             cHHHHHHhhhccccCCCCccCCHHHHHHHHHHHHHHHHHHHhCCEEcCCCCHHHEEEccCCCCCCcEEEeeccceeccCC
Confidence            777776421       12247888899999999999999987        5689999    5667999999999987654

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=99.83  E-value=4.4e-20  Score=154.58  Aligned_cols=128  Identities=19%  Similarity=0.277  Sum_probs=112.1

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc-------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEecc
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK-------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFV  165 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~-------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~  165 (243)
                      ++|...+.||+|+||.||++....+.             ...+.+.+|+.++++++|+||+++++++...+..|+||||+
T Consensus        19 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~~   98 (293)
T cd06647          19 KKYTRFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQPKKELIINEILVMRENKHPNIVNYLDSYLVGDELWVVMEYL   98 (293)
T ss_pred             hhceeeeEecCCCCeEEEEEEEcCCCCEEEEEEeccccchHHHHHHHHHHHHhhcCCCCeeehhheeeeCCcEEEEEecC
Confidence            67899999999999999999754332             13456888999999999999999999999999999999999


Q ss_pred             CCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          166 LNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       166 ~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      ++++|.+++...   .+++..+..++.+++.+|.|||.        +++||+++.++.+||+|||++..+..
T Consensus        99 ~~~~L~~~~~~~---~l~~~~~~~i~~~l~~al~~LH~~gi~H~dL~p~Nili~~~~~~kL~dfg~~~~~~~  167 (293)
T cd06647          99 AGGSLTDVVTET---CMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITP  167 (293)
T ss_pred             CCCcHHHHHhhc---CCCHHHHHHHHHHHHHHHHHHHhCCEeeccCCHHHEEEcCCCCEEEccCcceecccc
Confidence            999999998653   37888999999999999999987        45899999999999999999876543

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=99.83  E-value=7.1e-20  Score=151.93  Aligned_cols=132  Identities=18%  Similarity=0.324  Sum_probs=112.3

Q ss_pred             hCCCCccceeeecCceEEEEEEecCC------------------chhHHHHHHHHHHHHhcCCCccceEEEEEEe-CCee
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNG------------------KEGEREFQAEVEIISRVHHKHLVSLVGYYTA-GSQR  158 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~------------------~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~~~  158 (243)
                      .++|...+.||+|+||.||+|.+...                  ....+.+.+|+.+|++++|+||+++++++.. +...
T Consensus         5 ~~~~~~~~~i~~g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~   84 (280)
T cd05043           5 RDRVTLSDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHASEIQVTLLLQESCLLYGLSHQNILPILHVCIEDGEPP   84 (280)
T ss_pred             hhheEEeeeecccCCceEEEEEEecCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCC
Confidence            46788999999999999999987651                  1135668899999999999999999998765 5678


Q ss_pred             EEEEeccCCCCHHHHhccCCC------CCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCc
Q 039406          159 MLVYEFVLNNTLVFHLHGKGQ------PTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLA  224 (243)
Q Consensus       159 ~lv~e~~~~g~L~~~l~~~~~------~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a  224 (243)
                      ++++||+.+++|.+++.....      ..+++..++.++.+++.||.|||.        +++|||++.++.+||+|||++
T Consensus        85 ~~~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~i~H~di~p~nil~~~~~~~kl~d~g~~  164 (280)
T cd05043          85 FVLYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQIACGMSYLHKRGVIHKDIAARNCVIDEELQVKITDNALS  164 (280)
T ss_pred             EEEEEcCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHHCCEeecccCHhhEEEcCCCcEEECCCCCc
Confidence            999999999999999865321      358899999999999999999987        458999999999999999999


Q ss_pred             eecCC
Q 039406          225 KIASD  229 (243)
Q Consensus       225 ~~~~~  229 (243)
                      +.+..
T Consensus       165 ~~~~~  169 (280)
T cd05043         165 RDLFP  169 (280)
T ss_pred             ccccC
Confidence            87643

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=99.83  E-value=8.6e-20  Score=149.67  Aligned_cols=122  Identities=23%  Similarity=0.334  Sum_probs=103.7

Q ss_pred             eeeecCceEEEEEEecCC-----------------chhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccCCC
Q 039406          106 LLRQDGFGYVHRGVLPNG-----------------KEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNN  168 (243)
Q Consensus       106 ~lg~G~~g~V~~~~~~~~-----------------~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~g  168 (243)
                      .||+|+||.||+|.++..                 ....+.+.+|+.+|+.++|+||+++++++. .+..++||||+.++
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-~~~~~lv~e~~~~~   80 (257)
T cd05116           2 ELGSGNFGTVKKGMYKMKKSEKTVAVKILKNDNNDPALKDELLREANVMQQLDNPYIVRMIGICE-AESWMLVMELAELG   80 (257)
T ss_pred             cCCCcCCcceEEeEEecCCCceEEEEEEccCCCCcHHHHHHHHHHHHHHHhCCCCCcceEEEEEc-CCCcEEEEecCCCC
Confidence            689999999999865321                 113467889999999999999999999875 45678999999999


Q ss_pred             CHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          169 TLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       169 ~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      +|.+++....  .+++..++.++.|++.+|.|||.        ++.|||++.++.+||+|||+++.+...
T Consensus        81 ~L~~~l~~~~--~~~~~~~~~i~~qi~~al~~lH~~~i~H~dlkp~nill~~~~~~kl~Dfg~~~~~~~~  148 (257)
T cd05116          81 PLNKFLQKNK--HVTEKNITELVHQVSMGMKYLEETNFVHRDLAARNVLLVTQHYAKISDFGLSKALGAD  148 (257)
T ss_pred             cHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCEeecccchhhEEEcCCCeEEECCCccccccCCC
Confidence            9999986543  48899999999999999999987        568999999999999999999876543

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=99.83  E-value=9.3e-20  Score=148.95  Aligned_cols=126  Identities=26%  Similarity=0.420  Sum_probs=110.4

Q ss_pred             ceeeecCceEEEEEEecCC---ch--------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccCC
Q 039406          105 NLLRQDGFGYVHRGVLPNG---KE--------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLN  167 (243)
Q Consensus       105 ~~lg~G~~g~V~~~~~~~~---~~--------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~  167 (243)
                      +.||+|+||.||+|.....   ..              ..+.+.+|+++++.++|+||+++++++.....+++||||+.+
T Consensus         1 ~~ig~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   80 (262)
T cd00192           1 KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPNVVRLLGVCTEEEPLYLVLEYMEG   80 (262)
T ss_pred             CccccCCceEEEEEEEecCCCCCceEEeEeeccccchhHHHHHHHHHHHHhhcCCCChheeeeeecCCCceEEEEEeccC
Confidence            4799999999999987643   11              257788999999999999999999999999999999999999


Q ss_pred             CCHHHHhccCC-------CCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          168 NTLVFHLHGKG-------QPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       168 g~L~~~l~~~~-------~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      ++|.+++....       ...+++..++.++.+++.||.|||.        +++||+++.++.+||+|||++......
T Consensus        81 ~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~di~p~nili~~~~~~~l~dfg~~~~~~~~  158 (262)
T cd00192          81 GDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLASKKFVHRDLAARNCLVGEDLVVKISDFGLSRDVYDD  158 (262)
T ss_pred             CcHHHHHhhccccccccccccCCHHHHHHHHHHHHHHHHHHHcCCcccCccCcceEEECCCCcEEEcccccccccccc
Confidence            99999997651       2358999999999999999999987        468999999999999999999987653

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.83  E-value=7.1e-20  Score=151.87  Aligned_cols=130  Identities=24%  Similarity=0.356  Sum_probs=112.0

Q ss_pred             CCCCccceeeecCceEEEEEEecCC----------------ch--hHHHHHHHHHHHHhcCCCccceEEEEEEe--CCee
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNG----------------KE--GEREFQAEVEIISRVHHKHLVSLVGYYTA--GSQR  158 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~----------------~~--~~~~~~~E~~~l~~l~hp~iv~~~~~~~~--~~~~  158 (243)
                      ++|...+.||+|+||.||++.+...                ..  ..+.+.+|+++++.++|+||+++++++..  ....
T Consensus         4 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~ei~~l~~l~~~~i~~~~~~~~~~~~~~~   83 (284)
T cd05038           4 RHLKFIKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLDHENIVKYKGVCEKPGGRSL   83 (284)
T ss_pred             hhchhheeeccCCCeeEEEeeecCCCCCCceEEEEEEeccccchHHHHHHHHHHHHHHhCCCCChheEEeeeecCCCCce
Confidence            4677889999999999999975422                01  35678999999999999999999999887  5579


Q ss_pred             EEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          159 MLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       159 ~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      ++||||+++++|.+++..... .+++..++.++.+++.||.|||.        +++|||++.++.+||+|||++.....
T Consensus        84 ~lv~e~~~~~~l~~~l~~~~~-~~~~~~~~~~~~~l~~aL~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~  161 (284)
T cd05038          84 RLIMEYLPSGSLRDYLQRHRD-QINLKRLLLFSSQICKGMDYLGSQRYIHRDLAARNILVESEDLVKISDFGLAKVLPE  161 (284)
T ss_pred             EEEEecCCCCCHHHHHHhCcc-ccCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHhEEEcCCCCEEEccccccccccc
Confidence            999999999999999976543 48999999999999999999987        45899999999999999999998763

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=99.83  E-value=8.5e-20  Score=151.15  Aligned_cols=128  Identities=20%  Similarity=0.316  Sum_probs=111.2

Q ss_pred             CCCccceeeecCceEEEEEEecCCc--------------hhHHHHHHHHHHHHhcC---CCccceEEEEEEeCCeeEEEE
Q 039406          100 GFSDANLLRQDGFGYVHRGVLPNGK--------------EGEREFQAEVEIISRVH---HKHLVSLVGYYTAGSQRMLVY  162 (243)
Q Consensus       100 ~~~~~~~lg~G~~g~V~~~~~~~~~--------------~~~~~~~~E~~~l~~l~---hp~iv~~~~~~~~~~~~~lv~  162 (243)
                      .|+..+.||+|+||.||+|.+..+.              .....+.+|+.++++++   |+||+++++++..+...|+||
T Consensus         2 ~y~~~~~l~~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~vi~~~~~~~~~~~~~lv~   81 (277)
T cd06917           2 LYQRLELIGRGAYGAVYRGKHVPTGRVVALKIINLDTPDDDVSDIQREVALLSQLRQSQPPNITKYYGSYLKGPRLWIIM   81 (277)
T ss_pred             hhhhhhheeccCCceEEEEEEcCCCcEEEEEEecCCCCchhHHHHHHHHHHHHHhccCCCCCeeeEeeeeeeCCEEEEEE
Confidence            4777889999999999999864332              23456888999999996   999999999999999999999


Q ss_pred             eccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          163 EFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       163 e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      ||+.+++|.+++...   .+++..++.++.+++.+|.|||.        +++||+++.++.++|+|||++..+...
T Consensus        82 e~~~~~~L~~~~~~~---~l~~~~~~~i~~~i~~~l~~lh~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~  154 (277)
T cd06917          82 EYAEGGSVRTLMKAG---PIAEKYISVIIREVLVALKYIHKVGVIHRDIKAANILVTNTGNVKLCDFGVAALLNQN  154 (277)
T ss_pred             ecCCCCcHHHHHHcc---CCCHHHHHHHHHHHHHHHHHHHhCCcccCCcCHHHEEEcCCCCEEEccCCceeecCCC
Confidence            999999999988643   48899999999999999999987        458999999999999999999887543

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=99.83  E-value=5.2e-20  Score=154.76  Aligned_cols=129  Identities=25%  Similarity=0.404  Sum_probs=109.2

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc------------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK------------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRML  160 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~------------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~l  160 (243)
                      ++|...+.||+|+||.||++.+..+.                  .....+.+|+.+++.++|+||+++++++... ..++
T Consensus         7 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~-~~~~   85 (303)
T cd05110           7 TELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVRLLGVCLSP-TIQL   85 (303)
T ss_pred             hhceeccccccCCCccEEEEEEecCCCcceeeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEcCC-Ccee
Confidence            56888899999999999999753221                  1234678899999999999999999998754 5679


Q ss_pred             EEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          161 VYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       161 v~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      ++||+.+|+|.+++..... .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++.+..
T Consensus        86 v~e~~~~g~l~~~~~~~~~-~~~~~~~~~~~~qi~~~L~~LH~~~ivH~dikp~Nill~~~~~~kL~Dfg~~~~~~~  161 (303)
T cd05110          86 VTQLMPHGCLLDYVHEHKD-NIGSQLLLNWCVQIAKGMMYLEERRLVHRDLAARNVLVKSPNHVKITDFGLARLLEG  161 (303)
T ss_pred             eehhcCCCCHHHHHHhccc-CCCHHHHHHHHHHHHHHHHHHhhcCeeccccccceeeecCCCceEEccccccccccC
Confidence            9999999999999875443 47888999999999999999987        56899999999999999999987643

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=99.83  E-value=2.6e-20  Score=156.28  Aligned_cols=127  Identities=19%  Similarity=0.262  Sum_probs=108.7

Q ss_pred             CCCccceeeecCceEEEEEEecCCc-------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccC
Q 039406          100 GFSDANLLRQDGFGYVHRGVLPNGK-------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVL  166 (243)
Q Consensus       100 ~~~~~~~lg~G~~g~V~~~~~~~~~-------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~  166 (243)
                      .|.....||+|+||.||++....+.             ...+.+.+|+.+++.++|+||+++++++..++..|+||||++
T Consensus        22 ~~~~~~~ig~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~iv~e~~~  101 (297)
T cd06659          22 LLENYIKIGEGSTGIVCIAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHQNVVEMYKSYLVGEELWVLMEFLQ  101 (297)
T ss_pred             hHHhhhhcCCCCceeEEEEEEcCCCCEEEEEEEEecccchHHHHHHHHHHHHhCCCCchhhhhhheeeCCeEEEEEecCC
Confidence            3445668999999999999765322             134568899999999999999999999999999999999999


Q ss_pred             CCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          167 NNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       167 ~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      +++|..++...   .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||++..+..
T Consensus       102 ~~~L~~~~~~~---~~~~~~~~~~~~qi~~~L~~LH~~~ivH~dl~p~Nill~~~~~~kL~dfg~~~~~~~  169 (297)
T cd06659         102 GGALTDIVSQT---RLNEEQIATVCESVLQALCYLHSQGVIHRDIKSDSILLTLDGRVKLSDFGFCAQISK  169 (297)
T ss_pred             CCCHHHHHhhc---CCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHeEEccCCcEEEeechhHhhccc
Confidence            99999887542   48899999999999999999986        45899999999999999999976543

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=99.83  E-value=5.1e-20  Score=153.46  Aligned_cols=128  Identities=23%  Similarity=0.264  Sum_probs=109.0

Q ss_pred             CCCccceeeecCceEEEEEEecCCc--------------------hhHHHHHHHHHHHHhc-CCCccceEEEEEEeCCee
Q 039406          100 GFSDANLLRQDGFGYVHRGVLPNGK--------------------EGEREFQAEVEIISRV-HHKHLVSLVGYYTAGSQR  158 (243)
Q Consensus       100 ~~~~~~~lg~G~~g~V~~~~~~~~~--------------------~~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~~  158 (243)
                      +|.+.+.||+|+||.||+++.....                    ...+.+.+|+.++.++ +|+||+++++.+..+...
T Consensus         1 ~~~~~~~ig~G~~~~vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~~~~~~~   80 (288)
T cd05583           1 NFELLRVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVRRCPFLVTLHYAFQTDTKL   80 (288)
T ss_pred             CceEEEEeccCCCceEEEEEEeccccCCcEEEEEEEehHHHHhhhhHHHHHHHHHHHHHhccCCcchhhhheeeecCCEE
Confidence            4778899999999999998753211                    1234577899999999 599999999999999999


Q ss_pred             EEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          159 MLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       159 ~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      |+||||+.+++|.+++....  .+.+..++.++.|++.+|.|||.        ++.|||++.++.+||+|||+++.+..
T Consensus        81 ~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~ql~~~l~~lH~~~~~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~  157 (288)
T cd05583          81 HLILDYVNGGELFTHLYQRE--HFTESEVRVYIAEIVLALDHLHQLGIIYRDIKLENILLDSEGHVVLTDFGLSKEFLA  157 (288)
T ss_pred             EEEEecCCCCcHHHHHhhcC--CcCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEEEECcccccccc
Confidence            99999999999999886543  48889999999999999999987        35899999999999999999987643

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=99.83  E-value=1.1e-19  Score=151.80  Aligned_cols=129  Identities=21%  Similarity=0.288  Sum_probs=108.9

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch---------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEe
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE---------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYE  163 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~---------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e  163 (243)
                      ++|...+.||+|.+|.||++....+.+               ..+.+.+|++++++++|+||+++++++...+..|+|||
T Consensus         2 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   81 (294)
T PLN00009          2 DQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKRLYLVFE   81 (294)
T ss_pred             CceEEEEEecCCCCEEEEEEEecCCCcEEEEEehhhccccccchHHHHHHHHHHHhccCCCEeeEEEEEecCCeEEEEEe
Confidence            578999999999999999998764321               23567889999999999999999999999999999999


Q ss_pred             ccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECC-CCcEEEeccCCceecC
Q 039406          164 FVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDF-KFEAKVADFGLAKIAS  228 (243)
Q Consensus       164 ~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~-~~~~kl~DFG~a~~~~  228 (243)
                      |+. ++|.+++.......+++..+..++.|++.||.|||.        +++||+++. ++.+||+|||++....
T Consensus        82 ~~~-~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~i~H~dl~p~nill~~~~~~~kl~dfg~~~~~~  154 (294)
T PLN00009         82 YLD-LDLKKHMDSSPDFAKNPRLIKTYLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFG  154 (294)
T ss_pred             ccc-ccHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCcceEEEECCCCEEEEcccccccccC
Confidence            996 588887765544346788888999999999999987        468999985 5679999999998654

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=99.83  E-value=5e-20  Score=153.91  Aligned_cols=130  Identities=23%  Similarity=0.281  Sum_probs=111.5

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch---------------hHHHHHHHHHHHHhcCCCccceEEEEEEeC--CeeEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE---------------GEREFQAEVEIISRVHHKHLVSLVGYYTAG--SQRMLV  161 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~---------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~--~~~~lv  161 (243)
                      ++|...+.||.|.||.||+|....+..               ....+.+|+.+|++++|+||+++++++...  +..|+|
T Consensus         5 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~lv   84 (293)
T cd07843           5 DEYEKLNRIEEGTYGVVYRARDKKTGEIVALKKLKMEKEKEGFPITSLREINILLKLQHPNIVTVKEVVVGSNLDKIYMV   84 (293)
T ss_pred             hhhhhhhhhcCCCCeEEEEEEECCCCcEEEEEEEeeccccccchhhHHHHHHHHHhcCCCCEEEEEEEEEecCCCcEEEE
Confidence            578899999999999999998764321               233567899999999999999999998877  899999


Q ss_pred             EeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          162 YEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       162 ~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      |||+.+ +|.+++..... .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++.+...
T Consensus        85 ~e~~~~-~L~~~~~~~~~-~l~~~~~~~i~~qi~~aL~~LH~~~i~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~  159 (293)
T cd07843          85 MEYVEH-DLKSLMETMKQ-PFLQSEVKCLMLQLLSGVAHLHDNWILHRDLKTSNLLLNNRGILKICDFGLAREYGSP  159 (293)
T ss_pred             ehhcCc-CHHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHHHCCeeeccCCHHHEEECCCCcEEEeecCceeeccCC
Confidence            999975 99888865443 58999999999999999999987        458999999999999999999877543

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=99.83  E-value=1.3e-19  Score=148.73  Aligned_cols=123  Identities=28%  Similarity=0.408  Sum_probs=102.7

Q ss_pred             ceeeecCceEEEEEEecCC-----------------chhHHHHHHHHHHHHhcCCCccceEEEEEE-eCCeeEEEEeccC
Q 039406          105 NLLRQDGFGYVHRGVLPNG-----------------KEGEREFQAEVEIISRVHHKHLVSLVGYYT-AGSQRMLVYEFVL  166 (243)
Q Consensus       105 ~~lg~G~~g~V~~~~~~~~-----------------~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~-~~~~~~lv~e~~~  166 (243)
                      +.||+|+||.||+|.+...                 ....+.+.+|+.+++.++|+||+++++++. .++..++||||+.
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~~~   80 (262)
T cd05058           1 RVIGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRITDLEEVEQFLKEGIIMKDFSHPNVLSLLGICLPSEGSPLVVLPYMK   80 (262)
T ss_pred             CcccccCCceEEEEEEecCCCceEEEEEEecCccCCHHHHHHHHHHHHHHccCCCCCcceEEEEeecCCCCcEEEEecCC
Confidence            4689999999999975321                 113457788999999999999999999765 4556899999999


Q ss_pred             CCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          167 NNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       167 ~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      +++|.+++..... .+.+..++.++.+++.||.|||.        +++|||++.++.+||+|||+++.+.
T Consensus        81 ~~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlk~~nili~~~~~~kl~dfg~~~~~~  149 (262)
T cd05058          81 HGDLRNFIRSETH-NPTVKDLIGFGLQVAKGMEYLASKKFVHRDLAARNCMLDESFTVKVADFGLARDIY  149 (262)
T ss_pred             CCCHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHHhCCccccccCcceEEEcCCCcEEECCcccccccc
Confidence            9999999875433 36777888999999999999987        5689999999999999999998654

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=99.83  E-value=5.7e-20  Score=150.27  Aligned_cols=131  Identities=18%  Similarity=0.292  Sum_probs=112.7

Q ss_pred             CCCccceeeecCceEEEEEEecCCc---------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEec
Q 039406          100 GFSDANLLRQDGFGYVHRGVLPNGK---------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEF  164 (243)
Q Consensus       100 ~~~~~~~lg~G~~g~V~~~~~~~~~---------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  164 (243)
                      +|...+.||+|+||.||++..+.+.               ...+.+.+|+.++++++|+||+++++++...+..|+||||
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~   80 (257)
T cd08225           1 RYEIIKKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMPVKEKEASKKEVILLAKMKHPNIVTFFASFQENGRLFIVMEY   80 (257)
T ss_pred             CceEEEEecCCCcceEEEEEEcCCCceEEEEEeeHhhccchhhHHHHHHHHHHHhCCCCChhhhhheeccCCeEEEEEec
Confidence            4778899999999999999876532               2345678999999999999999999999999999999999


Q ss_pred             cCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCC-cEEEeccCCceecCCC
Q 039406          165 VLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKF-EAKVADFGLAKIASDV  230 (243)
Q Consensus       165 ~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~-~~kl~DFG~a~~~~~~  230 (243)
                      +.+++|.+++.......+++..++.++.+++.+|.|||.        +++||++++++ .+||+|||++......
T Consensus        81 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~H~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~  155 (257)
T cd08225          81 CDGGDLMKRINRQRGVLFSEDQILSWFVQISLGLKHIHDRKILHRDIKSQNIFLSKNGMVAKLGDFGIARQLNDS  155 (257)
T ss_pred             CCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCCHHHEEEcCCCCeEEecccccchhccCC
Confidence            999999999876554457999999999999999999987        45899998885 5699999999877543

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=99.83  E-value=7.8e-20  Score=151.82  Aligned_cols=128  Identities=24%  Similarity=0.366  Sum_probs=110.1

Q ss_pred             CCCccceeeecCceEEEEEEecCCch--------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEecc
Q 039406          100 GFSDANLLRQDGFGYVHRGVLPNGKE--------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFV  165 (243)
Q Consensus       100 ~~~~~~~lg~G~~g~V~~~~~~~~~~--------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~  165 (243)
                      +|+..+.||.|++|.||+|+...+..              ....+.+|++++++++|+||+++++++...+..++||||+
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   80 (284)
T cd07836           1 NFKQLEKLGEGTYATVYKGRNRTTGEIVALKEIHLDAEEGTPSTAIREISLMKELKHENIVRLHDVIHTENKLMLVFEYM   80 (284)
T ss_pred             CceEeeeeccCCceEEEEEEECCCCeEEEEEEecccccccchHHHHHHHHHHHhhcCCCEeeeeeeEeeCCcEEEEEecC
Confidence            58889999999999999998754321              2456778999999999999999999999999999999999


Q ss_pred             CCCCHHHHhccCC-CCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          166 LNNTLVFHLHGKG-QPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       166 ~~g~L~~~l~~~~-~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      .+ +|.+++.... ...+++..++.++.|++.+|.|||.        +++||+++.++.+||+|||+++.+.
T Consensus        81 ~~-~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~h~dl~p~ni~~~~~~~~~l~d~g~~~~~~  151 (284)
T cd07836          81 DK-DLKKYMDTHGVRGALDPNTVKSFTYQLLKGIAFCHENRVLHRDLKPQNLLINKRGELKLADFGLARAFG  151 (284)
T ss_pred             Cc-cHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEECCCCcEEEeecchhhhhc
Confidence            75 8888876543 2358999999999999999999986        4589999999999999999998654

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=99.83  E-value=8.6e-20  Score=149.52  Aligned_cols=132  Identities=20%  Similarity=0.260  Sum_probs=110.8

Q ss_pred             CCCccceeeecCceEEEEEEecCCc---------------hhHHHHHHHHHHHHhcCCCccceEEEEEEe--CCeeEEEE
Q 039406          100 GFSDANLLRQDGFGYVHRGVLPNGK---------------EGEREFQAEVEIISRVHHKHLVSLVGYYTA--GSQRMLVY  162 (243)
Q Consensus       100 ~~~~~~~lg~G~~g~V~~~~~~~~~---------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~--~~~~~lv~  162 (243)
                      +|++.+.||.|+||.||++....+.               ...+.+.+|+.+|++++|+||+++++++..  ....|++|
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~   80 (265)
T cd08217           1 DYEVLETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQLVSEVNILRELKHPNIVRYYDRIIDRSNQTLYIVM   80 (265)
T ss_pred             CceeeeeeccCCCeEEEEeeecCCCCEEEEEEEecccCCHHHHHHHHHHHHHHHhcCCCccceeeeeeecCCCCEEEEEe
Confidence            4788899999999999999755432               234568889999999999999999998764  45689999


Q ss_pred             eccCCCCHHHHhccC--CCCCCCHHHHHHHHHHHHHhhhHhh-----c--------CCCcEEECCCCcEEEeccCCceec
Q 039406          163 EFVLNNTLVFHLHGK--GQPTMDWPTRIKIALGSAKGLAYLH-----D--------DLANILLDFKFEAKVADFGLAKIA  227 (243)
Q Consensus       163 e~~~~g~L~~~l~~~--~~~~l~~~~~~~i~~~i~~~l~~lH-----~--------~~~NiLl~~~~~~kl~DFG~a~~~  227 (243)
                      ||+.+++|.+++...  ....+++..++.++.+++.+|.|||     .        +++||+++.++.+||+|||++..+
T Consensus        81 e~~~~~~L~~~l~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~~~~~~i~h~dl~p~nili~~~~~~kl~d~g~~~~~  160 (265)
T cd08217          81 EYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLALYECHNRSDPGNTVLHRDLKPANIFLDANNNVKLGDFGLAKIL  160 (265)
T ss_pred             hhccCCCHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhcCccccCcceecCCCHHHEEEecCCCEEEecccccccc
Confidence            999999999998653  1235899999999999999999999     4        458999999999999999999987


Q ss_pred             CCCC
Q 039406          228 SDVN  231 (243)
Q Consensus       228 ~~~~  231 (243)
                      ....
T Consensus       161 ~~~~  164 (265)
T cd08217         161 GHDS  164 (265)
T ss_pred             cCCc
Confidence            5543

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=99.83  E-value=4.4e-20  Score=153.40  Aligned_cols=131  Identities=24%  Similarity=0.330  Sum_probs=110.1

Q ss_pred             CCCCccceeeecCceEEEEEEecCC-------------------chhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNG-------------------KEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRM  159 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~-------------------~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~  159 (243)
                      .+|.+.+.||+|+||.||+|.+..+                   ....+.+.+|+.++..++|+||+++++++...+..+
T Consensus         5 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~   84 (283)
T cd05091           5 STVRFMEELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGPLREEFKHEAMMRSRLQHPNIVCLLGVVTKEQPLS   84 (283)
T ss_pred             HHHHHHHHhCCCCCCeEEEEEEecCCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcCCCceE
Confidence            3577788999999999999975432                   112456888999999999999999999999999999


Q ss_pred             EEEeccCCCCHHHHhccCC--------------CCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEE
Q 039406          160 LVYEFVLNNTLVFHLHGKG--------------QPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAK  217 (243)
Q Consensus       160 lv~e~~~~g~L~~~l~~~~--------------~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~k  217 (243)
                      +++||+.+++|.+++....              ...+++..++.++.|++.||.|||.        |++|||+++++.+|
T Consensus        85 ~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~~aL~~lH~~gi~H~dlkp~Nil~~~~~~~k  164 (283)
T cd05091          85 MIFSYCSHSDLHEFLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVTQIAAGMEFLSSHHVVHKDLATRNVLVFDKLNVK  164 (283)
T ss_pred             EEEEcCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHcCccccccchhheEecCCCceE
Confidence            9999999999999985321              1247888899999999999999986        56899999999999


Q ss_pred             EeccCCceecCC
Q 039406          218 VADFGLAKIASD  229 (243)
Q Consensus       218 l~DFG~a~~~~~  229 (243)
                      |+|||+++.+..
T Consensus       165 l~Dfg~~~~~~~  176 (283)
T cd05091         165 ISDLGLFREVYA  176 (283)
T ss_pred             eccccccccccc
Confidence            999999887643

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.83  E-value=7.4e-20  Score=156.39  Aligned_cols=121  Identities=21%  Similarity=0.221  Sum_probs=95.0

Q ss_pred             HhCCCCccceeeecCceEEEEEEecC-Cc------------------hhHHHHHHHHHHHHhcCCCccce-EEEEEEeCC
Q 039406           97 ATDGFSDANLLRQDGFGYVHRGVLPN-GK------------------EGEREFQAEVEIISRVHHKHLVS-LVGYYTAGS  156 (243)
Q Consensus        97 ~~~~~~~~~~lg~G~~g~V~~~~~~~-~~------------------~~~~~~~~E~~~l~~l~hp~iv~-~~~~~~~~~  156 (243)
                      ..++|...+.||+|+||+||+|+++. +.                  ...+.+.+|+++|++++|+||+. ++++    +
T Consensus        16 ~~~~Y~~~~~IG~G~fg~Vy~a~~~~~~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~~L~h~~iv~~l~~~----~   91 (365)
T PRK09188         16 LSARFVETAVLKRDVFSTVERGYFAGDPGTARAVRRRVSEVPWWSKPLARHLAAREIRALKTVRGIGVVPQLLAT----G   91 (365)
T ss_pred             ccCCceEccEEeecCcEEEEEEEEcCCCCeEEEEEEecccccccccHHHHHHHHHHHHHHHhccCCCCCcEEEEc----C
Confidence            34789999999999999999997643 11                  12445889999999999999985 5432    4


Q ss_pred             eeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc---------CCCcEEECCCCcEEEeccCCceec
Q 039406          157 QRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD---------DLANILLDFKFEAKVADFGLAKIA  227 (243)
Q Consensus       157 ~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~---------~~~NiLl~~~~~~kl~DFG~a~~~  227 (243)
                      ..|||||||+|++|... ..     ..   ...++.+++.+|.|||.         ||+|||++.++.+||+|||+|+.+
T Consensus        92 ~~~LVmE~~~G~~L~~~-~~-----~~---~~~~~~~i~~aL~~lH~~gIiHrDL~KP~NILv~~~~~ikLiDFGlA~~~  162 (365)
T PRK09188         92 KDGLVRGWTEGVPLHLA-RP-----HG---DPAWFRSAHRALRDLHRAGITHNDLAKPQNWLMGPDGEAAVIDFQLASVF  162 (365)
T ss_pred             CcEEEEEccCCCCHHHh-Cc-----cc---hHHHHHHHHHHHHHHHHCCCeeCCCCCcceEEEcCCCCEEEEECccceec
Confidence            68999999999999732 11     11   14567889999999976         467999999999999999999987


Q ss_pred             CCC
Q 039406          228 SDV  230 (243)
Q Consensus       228 ~~~  230 (243)
                      ...
T Consensus       163 ~~~  165 (365)
T PRK09188        163 RRR  165 (365)
T ss_pred             ccC
Confidence            543

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=99.83  E-value=1.1e-19  Score=149.24  Aligned_cols=122  Identities=25%  Similarity=0.313  Sum_probs=106.9

Q ss_pred             eeecCceEEEEEEecCCc----------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccCCCCH
Q 039406          107 LRQDGFGYVHRGVLPNGK----------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTL  170 (243)
Q Consensus       107 lg~G~~g~V~~~~~~~~~----------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~g~L  170 (243)
                      ||.|+||.||+++.....                ...+.+.+|+.+++.++|+||+++++++.+++.+|+||||+++++|
T Consensus         1 lg~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (262)
T cd05572           1 LGVGGFGRVELVKVKSKNRTFALKCVKKRHIVETGQQEHIFSEKEILEECNHPFIVKLYRTFKDKKYIYMLMEYCLGGEL   80 (262)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEEehhcchhhhHHHHHHHHHHHHHhCCCCCEeeeeeeEEcCCccEEEEecCCCCcH
Confidence            689999999999876421                1346688999999999999999999999999999999999999999


Q ss_pred             HHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          171 VFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       171 ~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      .+++....  .+++..++.++.+++.+|.|||.        +++||+++.++.+||+|||+++.....
T Consensus        81 ~~~l~~~~--~l~~~~~~~~~~~i~~~l~~lH~~~~~h~dl~~~nilv~~~~~~~l~df~~~~~~~~~  146 (262)
T cd05572          81 WTILRDRG--LFDEYTARFYIACVVLAFEYLHNRGIIYRDLKPENLLLDSNGYVKLVDFGFAKKLKSG  146 (262)
T ss_pred             HHHHhhcC--CCCHHHHHHHHHHHHHHHHHHhhCCcccCCCCHHHEEEcCCCCEEEeeCCcccccCcc
Confidence            99997543  48889999999999999999987        458999999999999999999987543

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.83  E-value=1.3e-19  Score=149.35  Aligned_cols=123  Identities=27%  Similarity=0.341  Sum_probs=103.3

Q ss_pred             ceeeecCceEEEEEEecCC-------------------------chhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeE
Q 039406          105 NLLRQDGFGYVHRGVLPNG-------------------------KEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRM  159 (243)
Q Consensus       105 ~~lg~G~~g~V~~~~~~~~-------------------------~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~  159 (243)
                      +.||+|+||.||+|+....                         ......+.+|+.+|+.++||||+++++++..+...+
T Consensus         1 ~~lg~G~~~~vy~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~l~~l~hp~iv~~~~~~~~~~~~~   80 (262)
T cd05077           1 EHLGRGTRTQIYAGILNYKDDDEDDGYSYEKEIKVILKVLDPSHRDISLAFFETASMMRQVSHKHIVLLYGVCVRDVENI   80 (262)
T ss_pred             CccccCCcceEeeeecccCCCccccccchhhceeEEEeecChhhhhHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCE
Confidence            3689999999999974321                         112346788899999999999999999999999999


Q ss_pred             EEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCc-------EEEeccCCc
Q 039406          160 LVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFE-------AKVADFGLA  224 (243)
Q Consensus       160 lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~-------~kl~DFG~a  224 (243)
                      +||||+.+++|..++..... .+++..++.++.|++.||.|||.        +++|||++.++.       +||+|||++
T Consensus        81 lv~e~~~~~~l~~~~~~~~~-~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~Nill~~~~~~~~~~~~~~l~d~g~~  159 (262)
T cd05077          81 MVEEFVEFGPLDLFMHRKSD-VLTTPWKFKVAKQLASALSYLEDKDLVHGNVCTKNILLAREGIDGECGPFIKLSDPGIP  159 (262)
T ss_pred             EEEecccCCCHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHhhhCCeECCCCCcccEEEecCCccCCCCceeEeCCCCCC
Confidence            99999999999988865433 48999999999999999999986        568999987664       899999998


Q ss_pred             eecC
Q 039406          225 KIAS  228 (243)
Q Consensus       225 ~~~~  228 (243)
                      ..+.
T Consensus       160 ~~~~  163 (262)
T cd05077         160 ITVL  163 (262)
T ss_pred             cccc
Confidence            7653

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=99.82  E-value=3.9e-20  Score=154.87  Aligned_cols=125  Identities=22%  Similarity=0.310  Sum_probs=107.6

Q ss_pred             CCccceeeecCceEEEEEEecCCc-------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccCC
Q 039406          101 FSDANLLRQDGFGYVHRGVLPNGK-------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLN  167 (243)
Q Consensus       101 ~~~~~~lg~G~~g~V~~~~~~~~~-------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~  167 (243)
                      |.....||+|+||.||++....+.             ...+.+.+|+.+++.++|+||+++++.+...+..|+||||+++
T Consensus        24 ~~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~lv~e~~~~  103 (292)
T cd06658          24 LDSFIKIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQRRELLFNEVVIMRDYHHENVVDMYNSYLVGDELWVVMEFLEG  103 (292)
T ss_pred             HhhhhcccCCCCeEEEEEEECCCCCEEEEEEEecchHHHHHHHHHHHHHHHhCCCCcHHHHHHheecCCeEEEEEeCCCC
Confidence            344567999999999999765432             2345688999999999999999999999999999999999999


Q ss_pred             CCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          168 NTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       168 g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      ++|.+++...   .+++..++.++.+++.+|.|||.        +++||+++.++.+||+|||++..+.
T Consensus       104 ~~L~~~~~~~---~l~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~Nill~~~~~~kL~dfg~~~~~~  169 (292)
T cd06658         104 GALTDIVTHT---RMNEEQIATVCLSVLRALSYLHNQGVIHRDIKSDSILLTSDGRIKLSDFGFCAQVS  169 (292)
T ss_pred             CcHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEcCCCCEEEccCcchhhcc
Confidence            9999988543   38889999999999999999986        4589999999999999999997654

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=99.82  E-value=6.3e-20  Score=150.77  Aligned_cols=129  Identities=21%  Similarity=0.276  Sum_probs=112.7

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc--------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEec
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK--------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEF  164 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~--------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  164 (243)
                      ++|+..+.||+|+||.||++..+.+.              ...+.+.+|++++++++|+||+++++++...+..++||||
T Consensus         1 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~   80 (265)
T cd06605           1 DDLEYLGELGAGNSGVVSKVLHRPTGKIMAVKTIRLEINEAIQKQILRELDILHKCNSPYIVGFYGAFYNNGDISICMEY   80 (265)
T ss_pred             CcchHHHHhcCCCCeEEEEEEEcCCCcEEEEEEEecccChHHHHHHHHHHHHHHHCCCCchhhhheeeecCCEEEEEEEe
Confidence            46788899999999999999876432              2346788999999999999999999999999999999999


Q ss_pred             cCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc---------CCCcEEECCCCcEEEeccCCceecC
Q 039406          165 VLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD---------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       165 ~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~---------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      +.+++|.+++.... ..+++..+..++.+++.+|.|||.         +++||+++.++.+||+|||++..+.
T Consensus        81 ~~~~~L~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~lH~~~~i~H~dl~~~ni~~~~~~~~~l~d~g~~~~~~  152 (265)
T cd06605          81 MDGGSLDKILKEVQ-GRIPERILGKIAVAVLKGLTYLHEKHKIIHRDVKPSNILVNSRGQIKLCDFGVSGQLV  152 (265)
T ss_pred             cCCCcHHHHHHHcc-CCCCHHHHHHHHHHHHHHHHHHcCCCCeecCCCCHHHEEECCCCCEEEeecccchhhH
Confidence            99999999987653 358899999999999999999988         2479999999999999999987653

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.82  E-value=4.3e-20  Score=151.42  Aligned_cols=142  Identities=20%  Similarity=0.298  Sum_probs=120.7

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhc-CCCccceEEEEEEeCCeeEE
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRV-HHKHLVSLVGYYTAGSQRML  160 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~~~l  160 (243)
                      .++|..+++||+|+|.+|..++++.+.+                .....+.|-.+..+. +||.+|-++.+|.++.++++
T Consensus       249 l~df~ll~vigrgsyakvl~~~~~~t~qiyamkvvkkel~nddedidwvqtek~vfe~asn~pflvglhscfqtesrlff  328 (593)
T KOG0695|consen  249 LQDFDLLRVIGRGSYAKVLLVRLKKTDQIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNNPFLVGLHSCFQTESRLFF  328 (593)
T ss_pred             cccceeeeeecCcchhhhhheehcccceeeehhhHHHHhcCCcccchhHHhhHHHHHhccCCCeEEehhhhhcccceEEE
Confidence            4789999999999999999998776543                344556666676665 79999999999999999999


Q ss_pred             EEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCc
Q 039406          161 VYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNT  232 (243)
Q Consensus       161 v~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~  232 (243)
                      |.||+.||+|.-++.+.+  .+++..++.+..+|+.||.|||.        |++|+|+|..|++||+|+|+++.-..+..
T Consensus       329 vieyv~ggdlmfhmqrqr--klpeeharfys~ei~lal~flh~rgiiyrdlkldnvlldaeghikltdygmcke~l~~gd  406 (593)
T KOG0695|consen  329 VIEYVNGGDLMFHMQRQR--KLPEEHARFYSAEICLALNFLHERGIIYRDLKLDNVLLDAEGHIKLTDYGMCKEGLGPGD  406 (593)
T ss_pred             EEEEecCcceeeehhhhh--cCcHHHhhhhhHHHHHHHHHHhhcCeeeeeccccceEEccCCceeecccchhhcCCCCCc
Confidence            999999999987776544  49999999999999999999997        66999999999999999999997544443


Q ss_pred             eeeecccccc
Q 039406          233 HVSTRVMGTF  242 (243)
Q Consensus       233 ~~~~~~~GT~  242 (243)
                       .++++||||
T Consensus       407 -~tstfcgtp  415 (593)
T KOG0695|consen  407 -TTSTFCGTP  415 (593)
T ss_pred             -ccccccCCC
Confidence             456799997

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.82  E-value=7.2e-22  Score=156.04  Aligned_cols=128  Identities=25%  Similarity=0.347  Sum_probs=108.1

Q ss_pred             CCCCccceeeecCceEEEEEEecCCchh---------------HHHHHHHHHHHHhcCCCccceEEEEEEe--------C
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKEG---------------EREFQAEVEIISRVHHKHLVSLVGYYTA--------G  155 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~---------------~~~~~~E~~~l~~l~hp~iv~~~~~~~~--------~  155 (243)
                      +.|+...+||+|.||.||+|+.+++.+.               -...++|+++|..|+|+|++.++++|..        .
T Consensus        17 ~~yek~~kigqGtfgeVFkAr~~n~~kkvalkkvlmeneKeGfpitalreikiL~~lkHenv~nliEic~tk~Tp~~r~r   96 (376)
T KOG0669|consen   17 SKYEKLAKIGQGTFGEVFKARSKNTGKKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPTNRDR   96 (376)
T ss_pred             hHHHHHHhcCCchHHHHHHHhhcCccchhHHHHHHHhccccCCcHHHHHHHHHHHHhcchhHHHHHHHHhhccCCccccc
Confidence            5677788999999999999998876542               1234689999999999999999988753        2


Q ss_pred             CeeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceec
Q 039406          156 SQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIA  227 (243)
Q Consensus       156 ~~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~  227 (243)
                      ..+|+||.+|+. +|.-++..... .++...+..++.+++.||.|+|+        |++|+||+.+|.+||+|||+|+.+
T Consensus        97 ~t~ylVf~~ceh-DLaGlLsn~~v-r~sls~Ikk~Mk~Lm~GL~~iHr~kilHRDmKaaNvLIt~dgilklADFGlar~f  174 (376)
T KOG0669|consen   97 ATFYLVFDFCEH-DLAGLLSNRKV-RFSLSEIKKVMKGLMNGLYYIHRNKILHRDMKAANVLITKDGILKLADFGLARAF  174 (376)
T ss_pred             ceeeeeHHHhhh-hHHHHhcCccc-cccHHHHHHHHHHHHHHHHHHHHhhHHhhcccHhhEEEcCCceEEeeccccccce
Confidence            359999999987 88888875543 58999999999999999999987        568999999999999999999876


Q ss_pred             C
Q 039406          228 S  228 (243)
Q Consensus       228 ~  228 (243)
                      .
T Consensus       175 s  175 (376)
T KOG0669|consen  175 S  175 (376)
T ss_pred             e
Confidence            4

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=99.82  E-value=1.1e-19  Score=152.35  Aligned_cols=132  Identities=25%  Similarity=0.309  Sum_probs=110.7

Q ss_pred             HHhCCCCccceeeecCceEEEEEEecCCch---------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCC----
Q 039406           96 RATDGFSDANLLRQDGFGYVHRGVLPNGKE---------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGS----  156 (243)
Q Consensus        96 ~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~---------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~----  156 (243)
                      ...++|.+.+.||+|+||.||+|..+.+.+               ....+.+|+.++++++|+||+++++++.+..    
T Consensus         4 ~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~~~~~~~~~~~~~~   83 (302)
T cd07864           4 RCVDKFDIIGQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLNHRNIVNLKEIVTDKQDALD   83 (302)
T ss_pred             hhhhhhheeeeecccCCEEEEEEEECCCCcEEEEEEEeecccccCchHHHHHHHHHHHhCCCCCeeeeeheecCcchhhh
Confidence            455789999999999999999998765321               2345678999999999999999999987654    


Q ss_pred             ------eeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccC
Q 039406          157 ------QRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFG  222 (243)
Q Consensus       157 ------~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG  222 (243)
                            .+|+||||+.+ +|...+.... ..+++..++.++.|++.||.|||.        +++||++++++.+||+|||
T Consensus        84 ~~~~~~~~~lv~e~~~~-~l~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~LH~~~i~H~dl~p~nili~~~~~~kl~dfg  161 (302)
T cd07864          84 FKKDKGAFYLVFEYMDH-DLMGLLESGL-VHFSEDHIKSFMKQLLEGLNYCHKKNFLHRDIKCSNILLNNKGQIKLADFG  161 (302)
T ss_pred             ccccCCcEEEEEcccCc-cHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCcEEeCccc
Confidence                  79999999976 7777665442 258999999999999999999986        4589999999999999999


Q ss_pred             CceecCC
Q 039406          223 LAKIASD  229 (243)
Q Consensus       223 ~a~~~~~  229 (243)
                      ++..+..
T Consensus       162 ~~~~~~~  168 (302)
T cd07864         162 LARLYNS  168 (302)
T ss_pred             ccccccC
Confidence            9987643

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=99.82  E-value=4.5e-20  Score=152.65  Aligned_cols=130  Identities=24%  Similarity=0.335  Sum_probs=113.6

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc----------------hhHHHHHHHHHHHHhcC-CCccceEEEEEEeCCeeEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK----------------EGEREFQAEVEIISRVH-HKHLVSLVGYYTAGSQRMLV  161 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~----------------~~~~~~~~E~~~l~~l~-hp~iv~~~~~~~~~~~~~lv  161 (243)
                      ++|...+.||.|+||.||++....+.                ...+.+.+|++++++++ |+||+++++++..++..++|
T Consensus         1 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv   80 (280)
T cd05581           1 DDFKFGKIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNGHPGIIKLYYTFQDEENLYFV   80 (280)
T ss_pred             CCceEeeeecCCCceEEEEEEEcCCCCEEEEEEechHhccchHHHHHHHHHHHHHHhcccCCCchhHHHHhcCCceEEEE
Confidence            47888999999999999999865432                12356788999999998 99999999999999999999


Q ss_pred             EeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          162 YEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       162 ~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      |||+++++|.+++...+  .+++..++.++.|++.+|.|||.        +++||+++.++.++|+|||++......
T Consensus        81 ~e~~~~~~L~~~l~~~~--~l~~~~~~~i~~ql~~~l~~Lh~~~~~H~dl~~~ni~i~~~~~~~l~df~~~~~~~~~  155 (280)
T cd05581          81 LEYAPNGELLQYIRKYG--SLDEKCTRFYAAEILLALEYLHSKGIIHRDLKPENILLDKDMHIKITDFGTAKVLDPN  155 (280)
T ss_pred             EcCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHeEECCCCCEEecCCccccccCCc
Confidence            99999999999997654  58999999999999999999987        458999999999999999999876543

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.82  E-value=9.4e-20  Score=149.60  Aligned_cols=123  Identities=24%  Similarity=0.308  Sum_probs=104.3

Q ss_pred             ceeeecCceEEEEEEecCCc--------------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEec
Q 039406          105 NLLRQDGFGYVHRGVLPNGK--------------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEF  164 (243)
Q Consensus       105 ~~lg~G~~g~V~~~~~~~~~--------------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  164 (243)
                      +.||+|+||.||+|..+...                    ...+.+.+|+.+|+.++|+||+++++++..++..++||||
T Consensus         1 ~~lg~G~~~~Vy~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~   80 (258)
T cd05078           1 ESLGQGTFTKIFKGIRREVGDYGELHKTEVLLKVLDKSHRNYSESFFEAASMMSQLSHKHLVLNYGVCVCGDESIMVQEY   80 (258)
T ss_pred             CCCCcccchhheeeeecccccccccccchhhHHhhcchhHHHHHHHHHHHHHHHhCCCCChhheeeEEEeCCCcEEEEec
Confidence            36999999999999764321                    1235678899999999999999999999999999999999


Q ss_pred             cCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCc--------EEEeccCCceecC
Q 039406          165 VLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFE--------AKVADFGLAKIAS  228 (243)
Q Consensus       165 ~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~--------~kl~DFG~a~~~~  228 (243)
                      +.+|+|.+++...+. .+++..++.++.|++.||.|||.        +++|||++.++.        +||+|||++....
T Consensus        81 ~~~g~L~~~l~~~~~-~~~~~~~~~~~~qi~~~l~~lH~~~iiH~dlkp~nili~~~~~~~~~~~~~~~l~d~g~~~~~~  159 (258)
T cd05078          81 VKFGSLDTYLKKNKN-LINISWKLEVAKQLAWALHFLEDKGLTHGNVCAKNVLLIREEDRKTGNPPFIKLSDPGISITVL  159 (258)
T ss_pred             CCCCcHHHHHhcCCC-CCCHHHHHHHHHHHHHHHHHHHHCCeecCCCccceEEEecccccccCCCceEEecccccccccC
Confidence            999999999976543 58899999999999999999987        568999987664        6999999987654

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=99.82  E-value=9.9e-20  Score=150.03  Aligned_cols=124  Identities=27%  Similarity=0.417  Sum_probs=105.2

Q ss_pred             ceeeecCceEEEEEEecCCc--------------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEec
Q 039406          105 NLLRQDGFGYVHRGVLPNGK--------------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEF  164 (243)
Q Consensus       105 ~~lg~G~~g~V~~~~~~~~~--------------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  164 (243)
                      +.||+|+||.||+|......                    .....+.+|+.+|+.++|+||+++++++...+..++||||
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~   80 (269)
T cd05044           1 NFLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGATDQEKKEFLKEAHLMSNFNHPNIVKLLGVCLLNEPQYIIMEL   80 (269)
T ss_pred             CccccccceeEEeeeecccccCcccceeehhhhhhcccchhhHHHHHHHHHHHHhcCCCCeeeEeeeecCCCCeEEEEec
Confidence            46999999999999764311                    1345678899999999999999999999999999999999


Q ss_pred             cCCCCHHHHhccCC-----CCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCC-----cEEEeccCCcee
Q 039406          165 VLNNTLVFHLHGKG-----QPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKF-----EAKVADFGLAKI  226 (243)
Q Consensus       165 ~~~g~L~~~l~~~~-----~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~-----~~kl~DFG~a~~  226 (243)
                      +.+++|.+++....     ...+++..++.++.+++.+|.|||.        +++|||++.++     .+||+|||+++.
T Consensus        81 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~~~~~~l~dfg~~~~  160 (269)
T cd05044          81 MEGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCVYLEQMHFIHRDLAARNCLVSEKGYDADRVVKIGDFGLARD  160 (269)
T ss_pred             cCCCcHHHHHHHhhhcccCCccccHHHHHHHHHHHHHHHHHHHhCCcccCCCChheEEEecCCCCCCcceEECCcccccc
Confidence            99999999986431     2247888999999999999999987        46899999877     899999999986


Q ss_pred             cC
Q 039406          227 AS  228 (243)
Q Consensus       227 ~~  228 (243)
                      +.
T Consensus       161 ~~  162 (269)
T cd05044         161 IY  162 (269)
T ss_pred             cc
Confidence            53

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.82  E-value=2.3e-20  Score=164.96  Aligned_cols=137  Identities=23%  Similarity=0.327  Sum_probs=114.1

Q ss_pred             ceeeecCceEEEEEEecCCch-------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccCCCCHH
Q 039406          105 NLLRQDGFGYVHRGVLPNGKE-------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLV  171 (243)
Q Consensus       105 ~~lg~G~~g~V~~~~~~~~~~-------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~g~L~  171 (243)
                      -+||+|+||+||-|++..++.             ..+-+..||.+.++|+|.|||+++|.+..++++-|.||-++||+|.
T Consensus       581 vVLGKGTYG~VYA~RD~~tqvrIaIKEIpekdsr~~QPLhEEIaLH~~LrHkNIVrYLGs~senGf~kIFMEqVPGGSLS  660 (1226)
T KOG4279|consen  581 VVLGKGTYGTVYAARDMDTQVRIAIKEIPEKDSREVQPLHEEIALHSTLRHKNIVRYLGSVSENGFFKIFMEQVPGGSLS  660 (1226)
T ss_pred             EEeecCceeEEEeeccccceeEEEeeecccccchhhccHHHHHHHHHHHhhHhHHHHhhccCCCCeEEEEeecCCCCcHH
Confidence            479999999999998877643             3456789999999999999999999999999999999999999999


Q ss_pred             HHhccC-CCCCCCHHHHHHHHHHHHHhhhHhhc------CC--CcEEEC-CCCcEEEeccCCceecCCCCceeeeccccc
Q 039406          172 FHLHGK-GQPTMDWPTRIKIALGSAKGLAYLHD------DL--ANILLD-FKFEAKVADFGLAKIASDVNTHVSTRVMGT  241 (243)
Q Consensus       172 ~~l~~~-~~~~l~~~~~~~i~~~i~~~l~~lH~------~~--~NiLl~-~~~~~kl~DFG~a~~~~~~~~~~~~~~~GT  241 (243)
                      +++..+ +...-.+..+-.+.+||+.||+|||.      |+  +||||+ -.|.+||+|||.++.+..-+. ++.++.||
T Consensus       661 sLLrskWGPlKDNEstm~fYtkQILeGLkYLHen~IVHRDIKGDNVLvNTySGvlKISDFGTsKRLAginP-~TETFTGT  739 (1226)
T KOG4279|consen  661 SLLRSKWGPLKDNESTMNFYTKQILEGLKYLHENKIVHRDIKGDNVLVNTYSGVLKISDFGTSKRLAGINP-CTETFTGT  739 (1226)
T ss_pred             HHHHhccCCCccchhHHHHHHHHHHHHhhhhhhcceeeccccCCcEEEeeccceEEecccccchhhccCCc-cccccccc
Confidence            998754 32223788899999999999999975      44  899996 569999999999998865443 34456777


Q ss_pred             c
Q 039406          242 F  242 (243)
Q Consensus       242 ~  242 (243)
                      +
T Consensus       740 L  740 (1226)
T KOG4279|consen  740 L  740 (1226)
T ss_pred             h
Confidence            4

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=99.82  E-value=1.6e-20  Score=149.94  Aligned_cols=132  Identities=20%  Similarity=0.293  Sum_probs=107.4

Q ss_pred             CCCCccceeeecCceEEEEEEecCC--------------chhHHHHHHHHHHHHhc-CCCccceEEEEEEeCCeeEEEEe
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNG--------------KEGEREFQAEVEIISRV-HHKHLVSLVGYYTAGSQRMLVYE  163 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~--------------~~~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~~~lv~e  163 (243)
                      ++...+..||.|+-|.|++++++.+              ++..++++..+.++... ++|+||+++|+|..+..++|.||
T Consensus        92 ndl~~l~dlGsGtcG~V~k~~~rs~~~iiAVK~M~rt~Nkee~kRILmDldvv~~s~dcpyIV~c~GyFi~n~dV~IcMe  171 (391)
T KOG0983|consen   92 NDLENLGDLGSGTCGQVWKMRFRSTGHIIAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVQCFGYFITNTDVFICME  171 (391)
T ss_pred             HHhhhHHhhcCCCccceEEEEEcccceEEEEEeecccCCHHHHHHHHHhhhHHhhccCCCeeeeeeeEEeeCchHHHHHH
Confidence            3445567899999999999987663              23567777788777666 49999999999999999999999


Q ss_pred             ccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHh-------hc--CCCcEEECCCCcEEEeccCCceecCCCCc
Q 039406          164 FVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL-------HD--DLANILLDFKFEAKVADFGLAKIASDVNT  232 (243)
Q Consensus       164 ~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~l-------H~--~~~NiLl~~~~~~kl~DFG~a~~~~~~~~  232 (243)
                      .| ...++.++..-.. .+++..+-.+...++.||.||       ||  ||+|||+|+.|++||||||++-++.+...
T Consensus       172 lM-s~C~ekLlkrik~-piPE~ilGk~tva~v~AL~YLKeKH~viHRDvKPSNILlDe~GniKlCDFGIsGrlvdSkA  247 (391)
T KOG0983|consen  172 LM-STCAEKLLKRIKG-PIPERILGKMTVAIVKALYYLKEKHGVIHRDVKPSNILLDERGNIKLCDFGISGRLVDSKA  247 (391)
T ss_pred             HH-HHHHHHHHHHhcC-CchHHhhhhhHHHHHHHHHHHHHhcceeecccCccceEEccCCCEEeecccccceeecccc
Confidence            99 4356666654333 588888888999999999998       66  67999999999999999999998876544

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=99.82  E-value=1.4e-19  Score=150.23  Aligned_cols=129  Identities=19%  Similarity=0.234  Sum_probs=105.8

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch--------------hHHHHHHHHHH-HHhcCCCccceEEEEEEeCCeeEEEEe
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE--------------GEREFQAEVEI-ISRVHHKHLVSLVGYYTAGSQRMLVYE  163 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~--------------~~~~~~~E~~~-l~~l~hp~iv~~~~~~~~~~~~~lv~e  163 (243)
                      ++|.+.+.||+|+||.||++....+.+              ....+..|+.+ ++.++|+||+++++++..++..|+|||
T Consensus         1 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~iv~~~~~~~~~~~~~lv~e   80 (283)
T cd06617           1 DDLEVIEELGRGAYGVVDKMRHVPTGTIMAVKRIRATVNSQEQKRLLMDLDISMRSVDCPYTVTFYGALFREGDVWICME   80 (283)
T ss_pred             CCceEEEEecccCCeEEEEEEEcCCCcEEEEEEEecCCCcHHHHHHHHHHHHHHHHcCCCCeeeeeEEEecCCcEEEEhh
Confidence            478899999999999999998764321              23445566665 566789999999999999999999999


Q ss_pred             ccCCCCHHHHhccC--CCCCCCHHHHHHHHHHHHHhhhHhhcC---------CCcEEECCCCcEEEeccCCceecC
Q 039406          164 FVLNNTLVFHLHGK--GQPTMDWPTRIKIALGSAKGLAYLHDD---------LANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       164 ~~~~g~L~~~l~~~--~~~~l~~~~~~~i~~~i~~~l~~lH~~---------~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      |++ ++|.+++...  ....+++..++.++.|++.||.|||.+         ++|||++.++.+||+|||+++.+.
T Consensus        81 ~~~-~~l~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~i~h~dlkp~nil~~~~~~~kl~dfg~~~~~~  155 (283)
T cd06617          81 VMD-TSLDKFYKKVYDKGLTIPEDILGKIAVSIVKALEYLHSKLSVIHRDVKPSNVLINRNGQVKLCDFGISGYLV  155 (283)
T ss_pred             hhc-ccHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhcCCeecCCCCHHHEEECCCCCEEEeecccccccc
Confidence            996 5887776532  223589999999999999999999863         479999999999999999998764

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=99.82  E-value=2.6e-19  Score=145.97  Aligned_cols=131  Identities=18%  Similarity=0.257  Sum_probs=114.3

Q ss_pred             CCCccceeeecCceEEEEEEecCCc---------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEec
Q 039406          100 GFSDANLLRQDGFGYVHRGVLPNGK---------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEF  164 (243)
Q Consensus       100 ~~~~~~~lg~G~~g~V~~~~~~~~~---------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  164 (243)
                      +|...+.||.|+||.||++....+.               ...+.+.+|+++++.++|+|++++++.+...+..++||||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~~~~~lv~e~   80 (258)
T cd08215           1 KYEIIKQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKKLNHPNIIKYYESFEEKGKLCIVMEY   80 (258)
T ss_pred             CceEEeeeccCCCeEEEEEEEcCCCcEEEEEEeecccCChHHHHHHHHHHHHHHhcCCCChhheEEEEecCCEEEEEEEe
Confidence            4778899999999999999876422               2456688999999999999999999999999999999999


Q ss_pred             cCCCCHHHHhccCC--CCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          165 VLNNTLVFHLHGKG--QPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       165 ~~~g~L~~~l~~~~--~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      +++++|.+++....  ...+++..++.++.+++.+|.|||.        +++||+++.++.+||+|||++......
T Consensus        81 ~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~H~dl~~~nil~~~~~~~~l~d~~~~~~~~~~  156 (258)
T cd08215          81 ADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLHSRKILHRDIKPQNIFLTSNGLVKLGDFGISKVLSST  156 (258)
T ss_pred             cCCCcHHHHHHHhhccCCCcCHHHHHHHHHHHHHHHHHHHhCCEecccCChHHeEEcCCCcEEECCccceeecccC
Confidence            99999999987642  2468999999999999999999987        458999999999999999999887554

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=99.82  E-value=3.8e-19  Score=144.92  Aligned_cols=130  Identities=25%  Similarity=0.395  Sum_probs=113.8

Q ss_pred             CCCccceeeecCceEEEEEEecCCc---------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEec
Q 039406          100 GFSDANLLRQDGFGYVHRGVLPNGK---------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEF  164 (243)
Q Consensus       100 ~~~~~~~lg~G~~g~V~~~~~~~~~---------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  164 (243)
                      +|...+.||+|.+|.||++......               .....+.+|++++.+++|+|++++++++.+.+..++||||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~   80 (254)
T cd06627           1 NYQLGDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPNIVKYIGSIETSDSLYIILEY   80 (254)
T ss_pred             CceeeeEEcccCCeEEEEEEEcCCCcEEEEEEecccccCHHHHHHHHHHHHHHHhCCCCCccEEEEEEEeCCEEEEEEec
Confidence            4778899999999999999765432               2456788999999999999999999999999999999999


Q ss_pred             cCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCC
Q 039406          165 VLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVN  231 (243)
Q Consensus       165 ~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~  231 (243)
                      +++++|.+++....  .+++..+..++.+++.+|.|||.        +++||+++.++.+||+|||++.......
T Consensus        81 ~~~~~L~~~~~~~~--~l~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~  153 (254)
T cd06627          81 AENGSLRQIIKKFG--PFPESLVAVYVYQVLQGLAYLHEQGVIHRDIKAANILTTKDGVVKLADFGVATKLNDVS  153 (254)
T ss_pred             CCCCcHHHHHHhcc--CCCHHHHHHHHHHHHHHHHHHhhCCcccCCCCHHHEEECCCCCEEEeccccceecCCCc
Confidence            99999999987653  58999999999999999999987        4589999999999999999999875433

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=99.82  E-value=2.9e-19  Score=145.75  Aligned_cols=123  Identities=26%  Similarity=0.447  Sum_probs=107.4

Q ss_pred             ceeeecCceEEEEEEecCCc-------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccCCCCHH
Q 039406          105 NLLRQDGFGYVHRGVLPNGK-------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLV  171 (243)
Q Consensus       105 ~~lg~G~~g~V~~~~~~~~~-------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~g~L~  171 (243)
                      ++||+|+||.||++.+..++             ...+.+.+|++++++++|+||+++++++...+..|+||||+.+++|.
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~l~   80 (251)
T cd05041           1 EKIGKGNFGDVYKGVLKGNTEVAVKTCRSTLPPDLKRKFLQEAEILKQYDHPNIVKLIGVCVQKQPIYIVMELVPGGSLL   80 (251)
T ss_pred             CccccCCCceEEEEEEeCCCcEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCCeEEEEEcCCCCcHH
Confidence            47999999999999865421             13467889999999999999999999999999999999999999999


Q ss_pred             HHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          172 FHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       172 ~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      +++..... .+++..++.++.+++.+|.|||.        +++|||++.++.+||+|||+++...
T Consensus        81 ~~l~~~~~-~~~~~~~~~~~~~~~~~l~~lH~~~i~h~di~p~nili~~~~~~~l~d~g~~~~~~  144 (251)
T cd05041          81 TFLRKKKN-RLTVKKLLQMSLDAAAGMEYLESKNCIHRDLAARNCLVGENNVLKISDFGMSREEE  144 (251)
T ss_pred             HHHHhcCC-CCCHHHHHHHHHHHHHHHHHHHhCCEehhhcCcceEEEcCCCcEEEeecccccccc
Confidence            99865433 47888999999999999999987        5689999999999999999998654

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=99.82  E-value=3.3e-19  Score=146.22  Aligned_cols=130  Identities=25%  Similarity=0.328  Sum_probs=114.8

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc--------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEec
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK--------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEF  164 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~--------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  164 (243)
                      ++|++.+.||+|++|.||++....+.              .....+.+|+..+.+++|+||+++++++...+..++||||
T Consensus         1 ~~~~~~~~i~~g~~~~v~~~~~~~~~~~~~vk~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~   80 (264)
T cd06623           1 SDLERVKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLRELKTLRSCESPYVVKCYGAFYKEGEISIVLEY   80 (264)
T ss_pred             CcceeeeeeeecCCeEEEEEEEcCCCcEEEEEEeccCcchHHHHHHHHHHHHHHhcCCCCeeeEEEEEccCCeEEEEEEe
Confidence            46888999999999999999876532              2356789999999999999999999999999999999999


Q ss_pred             cCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc-C--------CCcEEECCCCcEEEeccCCceecCCC
Q 039406          165 VLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD-D--------LANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       165 ~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~-~--------~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      +++++|.+++....  .+++..++.++.|++.+|.|||. .        ++||+++.++.++|+|||++..+...
T Consensus        81 ~~~~~L~~~l~~~~--~l~~~~~~~~~~~l~~~l~~lh~~~~~~H~~l~~~ni~~~~~~~~~l~df~~~~~~~~~  153 (264)
T cd06623          81 MDGGSLADLLKKVG--KIPEPVLAYIARQILKGLDYLHTKRHIIHRDIKPSNLLINSKGEVKIADFGISKVLENT  153 (264)
T ss_pred             cCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHhccCCCccCCCCHHHEEECCCCCEEEccCccceecccC
Confidence            99999999997553  58999999999999999999997 3        47999999999999999999987543

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=99.82  E-value=2.5e-19  Score=150.86  Aligned_cols=128  Identities=27%  Similarity=0.345  Sum_probs=109.1

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc----------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK----------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVY  162 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~----------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  162 (243)
                      ..|...+.||+|+||.||++....+.                +..+.+.+|+++++.++|+||+++++++.+.+..|+||
T Consensus        15 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~Ei~~l~~l~h~niv~~~~~~~~~~~~~lv~   94 (307)
T cd06607          15 KLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHPNTIEYKGCYLREHTAWLVM   94 (307)
T ss_pred             hhhhhheeecCCCCeEEEEEEEcCCCcEEEEEEEeccccCcHHHHHHHHHHHHHHHhCCCCCEEEEEEEEEeCCeEEEEH
Confidence            45888899999999999999764322                13356889999999999999999999999999999999


Q ss_pred             eccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          163 EFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       163 e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      ||+. |+|.+++..... .+++..+..++.|++.+|.|||.        ++.||+++.++.+||+|||++....
T Consensus        95 e~~~-g~l~~~~~~~~~-~l~~~~~~~~~~ql~~~L~~LH~~~i~H~dl~p~nIl~~~~~~~kL~dfg~~~~~~  166 (307)
T cd06607          95 EYCL-GSASDILEVHKK-PLQEVEIAAICHGALQGLAYLHSHERIHRDIKAGNILLTEPGTVKLADFGSASLVS  166 (307)
T ss_pred             HhhC-CCHHHHHHHccc-CCCHHHHHHHHHHHHHHHHHHHHCCceecCCCcccEEECCCCCEEEeecCcceecC
Confidence            9997 477776654333 48999999999999999999987        4689999999999999999998654

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=99.82  E-value=1.7e-19  Score=150.65  Aligned_cols=129  Identities=21%  Similarity=0.250  Sum_probs=107.6

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch---------------hHHHHHHHHHHHHhcC-CCccceEEEEEEeCCe-----
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE---------------GEREFQAEVEIISRVH-HKHLVSLVGYYTAGSQ-----  157 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~---------------~~~~~~~E~~~l~~l~-hp~iv~~~~~~~~~~~-----  157 (243)
                      ++|...+.||+|+||.||+|.+..+.+               ....+.+|+.+++.++ |+||+++++++...+.     
T Consensus         1 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~lK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~~   80 (295)
T cd07837           1 DAYEKLEKIGEGTYGKVYKARDKNTGKLVALKKTRLEMDEEGIPPTALREISLLQMLSESIYIVRLLDVEHVEEKNGKPS   80 (295)
T ss_pred             CCceEeeEecccCCeEEEEEEECCCCcEEEEEeehhhccccCCchHHHHHHHHHHHccCCCCccceeeeEeecCCCCCce
Confidence            468899999999999999998765421               2356788999999995 6999999999887665     


Q ss_pred             eEEEEeccCCCCHHHHhccCC---CCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECC-CCcEEEeccCCce
Q 039406          158 RMLVYEFVLNNTLVFHLHGKG---QPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDF-KFEAKVADFGLAK  225 (243)
Q Consensus       158 ~~lv~e~~~~g~L~~~l~~~~---~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~-~~~~kl~DFG~a~  225 (243)
                      .|+||||+++ +|.+++....   ...+++..++.++.||+.||.|||.        +++|||++. ++.+||+|||+++
T Consensus        81 ~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~i~H~dl~~~nil~~~~~~~~kl~dfg~~~  159 (295)
T cd07837          81 LYLVFEYLDS-DLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGVAHCHKHGVMHRDLKPQNLLVDKQKGLLKIADLGLGR  159 (295)
T ss_pred             EEEEeeccCc-CHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCChHHEEEecCCCeEEEeecccce
Confidence            8999999986 7888775432   2357999999999999999999987        458999998 8899999999998


Q ss_pred             ecC
Q 039406          226 IAS  228 (243)
Q Consensus       226 ~~~  228 (243)
                      .+.
T Consensus       160 ~~~  162 (295)
T cd07837         160 AFS  162 (295)
T ss_pred             ecC
Confidence            653

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=99.82  E-value=1.9e-19  Score=150.78  Aligned_cols=123  Identities=22%  Similarity=0.289  Sum_probs=107.0

Q ss_pred             cceeeecCceEEEEEEecCCc-------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccCCCCH
Q 039406          104 ANLLRQDGFGYVHRGVLPNGK-------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTL  170 (243)
Q Consensus       104 ~~~lg~G~~g~V~~~~~~~~~-------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~g~L  170 (243)
                      ...||+|+||.||++....+.             .....+.+|+.+++.++|+||+++++++...+..|+||||+++++|
T Consensus        25 ~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L  104 (292)
T cd06657          25 FIKIGEGSTGIVCIATVKSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGAL  104 (292)
T ss_pred             HHHcCCCCCeEEEEEEEcCCCeEEEEEEecccchhHHHHHHHHHHHHHhcCCcchhheeeEEEeCCEEEEEEecCCCCcH
Confidence            468999999999999765432             2345688999999999999999999999999999999999999999


Q ss_pred             HHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          171 VFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       171 ~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      .+++...   .+++..++.++.|++.+|.|||.        +++||+++.++.++|+|||++..+..
T Consensus       105 ~~~~~~~---~~~~~~~~~~~~ql~~~l~~lH~~givH~dl~p~Nilv~~~~~~~l~dfg~~~~~~~  168 (292)
T cd06657         105 TDIVTHT---RMNEEQIAAVCLAVLKALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSK  168 (292)
T ss_pred             HHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEEcccccceeccc
Confidence            9987543   37899999999999999999987        45899999999999999999887643

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=99.82  E-value=3.9e-20  Score=157.07  Aligned_cols=140  Identities=31%  Similarity=0.451  Sum_probs=115.2

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch--------hHHHHHHHHHHHHh--cCCCccceEEEEEEeCC----eeEEEEec
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE--------GEREFQAEVEIISR--VHHKHLVSLVGYYTAGS----QRMLVYEF  164 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~--------~~~~~~~E~~~l~~--l~hp~iv~~~~~~~~~~----~~~lv~e~  164 (243)
                      +.....++||+|.||.||+|.+.+...        ..+.|.+|-+|..-  ++|+||++++++-+...    .++||+||
T Consensus       210 ~pl~l~eli~~Grfg~V~KaqL~~~~VAVKifp~~~kqs~~~Ek~Iy~lp~m~h~nIl~Fi~~ekr~t~~~~eywLVt~f  289 (534)
T KOG3653|consen  210 DPLQLLELIGRGRFGCVWKAQLDNRLVAVKIFPEQEKQSFQNEKNIYSLPGMKHENILQFIGAEKRGTADRMEYWLVTEF  289 (534)
T ss_pred             CchhhHHHhhcCccceeehhhccCceeEEEecCHHHHHHHHhHHHHHhccCccchhHHHhhchhccCCccccceeEEeee
Confidence            556677899999999999998877532        56778888888764  58999999999876555    79999999


Q ss_pred             cCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhcC---------------C--CcEEECCCCcEEEeccCCceec
Q 039406          165 VLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHDD---------------L--ANILLDFKFEAKVADFGLAKIA  227 (243)
Q Consensus       165 ~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~---------------~--~NiLl~~~~~~kl~DFG~a~~~  227 (243)
                      .+.|+|.+++..+   ..+|.....++..++.||.|||.+               +  .||||.+|++..|+|||||..+
T Consensus       290 h~kGsL~dyL~~n---tisw~~~cria~SmarGLa~LHee~p~~d~~Kp~IaHRDlkSkNVLvK~DlTccIaDFGLAl~~  366 (534)
T KOG3653|consen  290 HPKGSLCDYLKAN---TISWNSLCRIAESMARGLAHLHEELPRGDHHKPPIAHRDLKSKNVLVKNDLTCCIADFGLALRL  366 (534)
T ss_pred             ccCCcHHHHHHhc---cccHHHHHHHHHHHHHHHHHhcccCCcCCCCCCccccccccccceEEccCCcEEeeccceeEEe
Confidence            9999999999765   589999999999999999999872               2  6999999999999999999998


Q ss_pred             CCCCceeee-ccccc
Q 039406          228 SDVNTHVST-RVMGT  241 (243)
Q Consensus       228 ~~~~~~~~~-~~~GT  241 (243)
                      ........+ ..+||
T Consensus       367 ~p~~~~~d~~~qVGT  381 (534)
T KOG3653|consen  367 EPGKPQGDTHGQVGT  381 (534)
T ss_pred             cCCCCCcchhhhhhh
Confidence            643322211 24666

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=99.82  E-value=2.9e-19  Score=147.34  Aligned_cols=131  Identities=21%  Similarity=0.296  Sum_probs=109.1

Q ss_pred             CCCccceeeecCceEEEEEEecCC-c-----------------------hhHHHHHHHHHHHHh-cCCCccceEEEEEEe
Q 039406          100 GFSDANLLRQDGFGYVHRGVLPNG-K-----------------------EGEREFQAEVEIISR-VHHKHLVSLVGYYTA  154 (243)
Q Consensus       100 ~~~~~~~lg~G~~g~V~~~~~~~~-~-----------------------~~~~~~~~E~~~l~~-l~hp~iv~~~~~~~~  154 (243)
                      +|.+.+.||+|+||.||++....+ .                       .....+.+|+.++.+ ++|+||+++++++..
T Consensus         1 ~y~~~~~ig~G~~~~v~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~   80 (269)
T cd08528           1 EYAVLEHLGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQLRHPNIVRYYKTFLE   80 (269)
T ss_pred             CchhhhhhcCCCCceEEEEEEcCCCCceeeeeEeeccccccccccccchHHHHHHHHHHHHHhhcCCCCCeeeEEeeEcc
Confidence            477889999999999999987651 1                       123456778888865 799999999999999


Q ss_pred             CCeeEEEEeccCCCCHHHHhcc--CCCCCCCHHHHHHHHHHHHHhhhHhhc---------CCCcEEECCCCcEEEeccCC
Q 039406          155 GSQRMLVYEFVLNNTLVFHLHG--KGQPTMDWPTRIKIALGSAKGLAYLHD---------DLANILLDFKFEAKVADFGL  223 (243)
Q Consensus       155 ~~~~~lv~e~~~~g~L~~~l~~--~~~~~l~~~~~~~i~~~i~~~l~~lH~---------~~~NiLl~~~~~~kl~DFG~  223 (243)
                      ++..|+||||+++++|.+++..  .....+++..++.++.+++.+|.|||.         ++.|||++.++.+||+|||+
T Consensus        81 ~~~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~~i~H~dl~~~nil~~~~~~~~l~dfg~  160 (269)
T cd08528          81 NDRLYIVMDLIEGAPLGEHFNSLKEKKQRFTEERIWNIFVQMVLALRYLHKEKRIVHRDLTPNNIMLGEDDKVTITDFGL  160 (269)
T ss_pred             CCeEEEEEecCCCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhccCCceeecCCCHHHEEECCCCcEEEecccc
Confidence            9999999999999999988743  122358899999999999999999984         24799999999999999999


Q ss_pred             ceecCCC
Q 039406          224 AKIASDV  230 (243)
Q Consensus       224 a~~~~~~  230 (243)
                      +......
T Consensus       161 ~~~~~~~  167 (269)
T cd08528         161 AKQKQPE  167 (269)
T ss_pred             eeecccc
Confidence            9876544

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=99.82  E-value=1.8e-19  Score=154.17  Aligned_cols=131  Identities=19%  Similarity=0.306  Sum_probs=110.1

Q ss_pred             HHHhCCCCccceeeecCceEEEEEEecCCch---------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCC---
Q 039406           95 ARATDGFSDANLLRQDGFGYVHRGVLPNGKE---------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGS---  156 (243)
Q Consensus        95 ~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~---------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~---  156 (243)
                      ....++|.+.+.||+|+||.||++....+..               ..+.+.+|+.+|++++|+||+++++++....   
T Consensus        11 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   90 (343)
T cd07880          11 WEVPDRYRDLKQVGSGAYGTVCSALDRRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMKHENVIGLLDVFTPDLSLD   90 (343)
T ss_pred             hccccceEEEEEeeecCCeEEEEEEECCCCcEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCccceeeeecCCcccc
Confidence            3456889999999999999999997543321               2346788999999999999999999987654   


Q ss_pred             ---eeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCce
Q 039406          157 ---QRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAK  225 (243)
Q Consensus       157 ---~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~  225 (243)
                         .+++||||+ +++|.+++...   .+++..++.++.|++.||.|||+        +++|||++.++.+||+|||+++
T Consensus        91 ~~~~~~lv~e~~-~~~l~~~~~~~---~l~~~~~~~i~~qi~~al~~LH~~gi~H~dlkp~Nill~~~~~~kl~dfg~~~  166 (343)
T cd07880          91 RFHDFYLVMPFM-GTDLGKLMKHE---KLSEDRIQFLVYQMLKGLKYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLAR  166 (343)
T ss_pred             ccceEEEEEecC-CCCHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEeeccccc
Confidence               468999999 77998888642   48999999999999999999987        4689999999999999999998


Q ss_pred             ecCC
Q 039406          226 IASD  229 (243)
Q Consensus       226 ~~~~  229 (243)
                      ....
T Consensus       167 ~~~~  170 (343)
T cd07880         167 QTDS  170 (343)
T ss_pred             cccc
Confidence            7643

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=99.82  E-value=2.2e-19  Score=151.32  Aligned_cols=130  Identities=25%  Similarity=0.298  Sum_probs=109.5

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCch---------------hHHHHHHHHHHHHhcCCCccceEEEEEEeC--CeeEE
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGKE---------------GEREFQAEVEIISRVHHKHLVSLVGYYTAG--SQRML  160 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~---------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~--~~~~l  160 (243)
                      .++|...+.||+|+||.||+|....+.+               ....+.+|+.+|++++|+||+++++++...  +.+|+
T Consensus         6 ~~~y~~~~~ig~g~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~l   85 (309)
T cd07845           6 VTEFEKLNRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERDGIPISSLREITLLLNLRHPNIVELKEVVVGKHLDSIFL   85 (309)
T ss_pred             ccceeEeeeeeecCCEEEEEEEECCCCcEEEEEEEEeccCCCCCcchhhHHHHHHHhCCCCCCcceEEEEecCCCCeEEE
Confidence            4789999999999999999998765322               123456899999999999999999998755  56899


Q ss_pred             EEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          161 VYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       161 v~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      ||||+.+ +|.+++.... ..+++..++.++.|++.+|.|||.        +++|||++.++.+||+|||+++.+..
T Consensus        86 v~e~~~~-~l~~~l~~~~-~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nil~~~~~~~kL~dfg~~~~~~~  160 (309)
T cd07845          86 VMEYCEQ-DLASLLDNMP-TPFSESQVKCLMLQLLRGLQYLHENFIIHRDLKVSNLLLTDKGCLKIADFGLARTYGL  160 (309)
T ss_pred             EEecCCC-CHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEECccceeeecCC
Confidence            9999965 8888876533 358999999999999999999987        45899999999999999999987754

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=99.82  E-value=3.8e-19  Score=148.27  Aligned_cols=127  Identities=21%  Similarity=0.273  Sum_probs=110.0

Q ss_pred             CCCccceeeecCceEEEEEEecCCc-------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccC
Q 039406          100 GFSDANLLRQDGFGYVHRGVLPNGK-------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVL  166 (243)
Q Consensus       100 ~~~~~~~lg~G~~g~V~~~~~~~~~-------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~  166 (243)
                      .|...+.||+|++|.||++....+.             ...+.+.+|+.+++.++|+||+++++++...+..|+|+||+.
T Consensus        20 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~~~h~~vv~~~~~~~~~~~~~~v~e~~~   99 (285)
T cd06648          20 YLDNFVKIGEGSTGIVCIATDKSTGRQVAVKKMDLRKQQRRELLFNEVVIMRDYQHPNIVEMYSSYLVGDELWVVMEFLE   99 (285)
T ss_pred             hhhcceEeccCCCeEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHHcCCCChheEEEEEEcCCeEEEEEeccC
Confidence            4555679999999999999865432             134567899999999999999999999999999999999999


Q ss_pred             CCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          167 NNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       167 ~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      +++|.+++...   .+++..++.++.+++.+|.|||.        +++||+++.++.+||+|||++.....
T Consensus       100 ~~~L~~~~~~~---~~~~~~~~~~~~ql~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~l~d~g~~~~~~~  167 (285)
T cd06648         100 GGALTDIVTHT---RMNEEQIATVCLAVLKALSFLHAQGVIHRDIKSDSILLTSDGRVKLSDFGFCAQVSK  167 (285)
T ss_pred             CCCHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHhCCeecCCCChhhEEEcCCCcEEEcccccchhhcc
Confidence            99999998752   48889999999999999999987        46899999999999999999876543

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=99.81  E-value=2.8e-19  Score=148.84  Aligned_cols=132  Identities=21%  Similarity=0.286  Sum_probs=115.6

Q ss_pred             HhCCCCccceeeecCceEEEEEEecCCch------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEec
Q 039406           97 ATDGFSDANLLRQDGFGYVHRGVLPNGKE------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEF  164 (243)
Q Consensus        97 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  164 (243)
                      ..+.|+..+.||+|+||.||++.+.....            ..+.+.+|+++|+.++|+||+++++++...+..|+||||
T Consensus        17 ~~~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~   96 (286)
T cd06614          17 PRELYKNLEKIGEGASGEVYKATDRATGKEVAIKKMRLRKQNKELIINEILIMKDCKHPNIVDYYDSYLVGDELWVVMEY   96 (286)
T ss_pred             ccccchHhHhccCCCCeEEEEEEEccCCcEEEEEEEecCchhHHHHHHHHHHHHHCCCCCeeEEEEEEEECCEEEEEEec
Confidence            45678889999999999999998764321            256788999999999999999999999999999999999


Q ss_pred             cCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          165 VLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       165 ~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      +++++|.+++.... ..+++..+..++.+++.+|.|||.        +++||+++.++.+||+|||++.....
T Consensus        97 ~~~~~L~~~l~~~~-~~l~~~~~~~i~~~i~~~L~~lH~~gi~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~  168 (286)
T cd06614          97 MDGGSLTDIITQNF-VRMNEPQIAYVCREVLQGLEYLHSQNVIHRDIKSDNILLSKDGSVKLADFGFAAQLTK  168 (286)
T ss_pred             cCCCcHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCChhhEEEcCCCCEEECccchhhhhcc
Confidence            99999999997654 258999999999999999999986        46899999999999999999876543

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=99.81  E-value=2.9e-19  Score=148.25  Aligned_cols=128  Identities=20%  Similarity=0.246  Sum_probs=109.9

Q ss_pred             CCccceeeecCceEEEEEEecCCc---------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeC--CeeEEEEe
Q 039406          101 FSDANLLRQDGFGYVHRGVLPNGK---------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAG--SQRMLVYE  163 (243)
Q Consensus       101 ~~~~~~lg~G~~g~V~~~~~~~~~---------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~--~~~~lv~e  163 (243)
                      |.+.+.||+|+||.||+++.....               .....+.+|++++++++|+||+++++++...  +..++|||
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~e   80 (287)
T cd07840           1 YEKIAQIGEGTYGQVYKARNKKTGELVALKKIRMENEKEGFPITAIREIKLLQKLRHPNIVRLKEIVTSKGKGSIYMVFE   80 (287)
T ss_pred             CeeeEEeccCCCeEEEEEEECCCCeEEEEEEEecccccccchHHHHHHHHHHHhccCCCeeeheeeEecCCCCcEEEEec
Confidence            567889999999999999876532               1235678899999999999999999999988  89999999


Q ss_pred             ccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          164 FVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       164 ~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      |+.+ +|.+++.... ..+++..++.++.+++.||.|||.        +++|||+++++.+||+|||++......
T Consensus        81 ~~~~-~l~~~~~~~~-~~~~~~~~~~i~~~i~~al~~LH~~~~~h~dl~p~nil~~~~~~~~l~d~g~~~~~~~~  153 (287)
T cd07840          81 YMDH-DLTGLLDSPE-VKFTESQIKCYMKQLLEGLQYLHSNGILHRDIKGSNILINNDGVLKLADFGLARPYTKR  153 (287)
T ss_pred             cccc-cHHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHHHCCceeccCcHHHeEEcCCCCEEEccccceeeccCC
Confidence            9975 8988886543 258999999999999999999987        458999999999999999999987554

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.81  E-value=8.2e-20  Score=154.12  Aligned_cols=132  Identities=28%  Similarity=0.338  Sum_probs=113.8

Q ss_pred             HhCCCCccceeeecCceEEEEEEecCCch--------hHHHHHHHHHHHHhc--CCCccceEEEEEEeCC----eeEEEE
Q 039406           97 ATDGFSDANLLRQDGFGYVHRGVLPNGKE--------GEREFQAEVEIISRV--HHKHLVSLVGYYTAGS----QRMLVY  162 (243)
Q Consensus        97 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~--------~~~~~~~E~~~l~~l--~hp~iv~~~~~~~~~~----~~~lv~  162 (243)
                      +.......+.||+|.||+||+|.++....        ..+.+.+|.+|.+.+  +|+||+.+++.-..++    .+|||.
T Consensus       209 iarqI~L~e~IGkGRyGEVwrG~wrGe~VAVKiF~srdE~SWfrEtEIYqTvmLRHENILgFIaaD~~~~gs~TQLwLvT  288 (513)
T KOG2052|consen  209 IARQIVLQEIIGKGRFGEVWRGRWRGEDVAVKIFSSRDERSWFRETEIYQTVMLRHENILGFIAADNKDNGSWTQLWLVT  288 (513)
T ss_pred             hhheeEEEEEecCccccceeeccccCCceEEEEecccchhhhhhHHHHHHHHHhccchhhhhhhccccCCCceEEEEEee
Confidence            34667888999999999999999987654        567789999999874  9999999998765444    589999


Q ss_pred             eccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------------CC--CcEEECCCCcEEEeccCCcee
Q 039406          163 EFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------------DL--ANILLDFKFEAKVADFGLAKI  226 (243)
Q Consensus       163 e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------------~~--~NiLl~~~~~~kl~DFG~a~~  226 (243)
                      +|.+.|+|+|+|.+.   .++....+.++..++.||.+||-              |+  .|||+.+++.+.|+|||||..
T Consensus       289 dYHe~GSL~DyL~r~---tv~~~~ml~LalS~AsGLaHLH~eI~GTqgKPaIAHRDlKSKNILVKkn~~C~IADLGLAv~  365 (513)
T KOG2052|consen  289 DYHEHGSLYDYLNRN---TVTTEGMLKLALSIASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVR  365 (513)
T ss_pred             ecccCCcHHHHHhhc---cCCHHHHHHHHHHHhhhHHHHHHHHhcCCCCchhhccccccccEEEccCCcEEEeeceeeEE
Confidence            999999999999763   58999999999999999999975              22  699999999999999999998


Q ss_pred             cCCCC
Q 039406          227 ASDVN  231 (243)
Q Consensus       227 ~~~~~  231 (243)
                      .....
T Consensus       366 h~~~t  370 (513)
T KOG2052|consen  366 HDSDT  370 (513)
T ss_pred             ecccC
Confidence            76553

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=99.81  E-value=1.4e-19  Score=154.31  Aligned_cols=129  Identities=24%  Similarity=0.364  Sum_probs=108.6

Q ss_pred             HhCCCCccceeeecCceEEEEEEecCCch---------------hHHHHHHHHHHHHhc-CCCccceEEEEEEeC--Cee
Q 039406           97 ATDGFSDANLLRQDGFGYVHRGVLPNGKE---------------GEREFQAEVEIISRV-HHKHLVSLVGYYTAG--SQR  158 (243)
Q Consensus        97 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~---------------~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~--~~~  158 (243)
                      ..++|.+.+.||+|+||.||+|.+..+..               ....+.+|+.+++++ +|+||+++++++...  ..+
T Consensus         5 ~~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~ni~~~~~~~~~~~~~~~   84 (337)
T cd07852           5 ILRKYEILQKLGKGAYGIVWKAIDRRTKEVVALKKIFDAFRNATDAQRTFREIMFLQELGDHPNIVKLLNVIKAENDKDI   84 (337)
T ss_pred             hhhHHHHhHhhcCCCCeeEEEEEEcCCCeEEEEEeeccccCcchhhhhhhHHHHHHHHhcCCCCccceeeeeccCCCceE
Confidence            45789999999999999999998654321               234567899999999 999999999988653  368


Q ss_pred             EEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          159 MLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       159 ~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      |+||||+. ++|.+++...   .+.+...+.++.|++.||.|||.        +++|||++.++.+||+|||+++.+..
T Consensus        85 ~lv~e~~~-~~L~~~~~~~---~~~~~~~~~i~~qi~~~L~~LH~~~i~H~dl~p~nill~~~~~~kl~d~g~~~~~~~  159 (337)
T cd07852          85 YLVFEYME-TDLHAVIRAN---ILEDVHKRYIMYQLLKALKYIHSGNVIHRDLKPSNILLNSDCRVKLADFGLARSLSE  159 (337)
T ss_pred             EEEecccc-cCHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCcEEEeeccchhcccc
Confidence            99999997 5999888654   48888999999999999999987        45899999999999999999987643

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=99.81  E-value=7e-19  Score=142.76  Aligned_cols=130  Identities=28%  Similarity=0.372  Sum_probs=114.1

Q ss_pred             CCCccceeeecCceEEEEEEecCCch-------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccC
Q 039406          100 GFSDANLLRQDGFGYVHRGVLPNGKE-------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVL  166 (243)
Q Consensus       100 ~~~~~~~lg~G~~g~V~~~~~~~~~~-------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~  166 (243)
                      +|...+.||+|++|.||++....+.+             ....+.+|++++++++|+||+++++++...+..++++||+.
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~l~~e~~~   80 (253)
T cd05122           1 LFEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILKKCKHPNIVKYYGSYLKKDELWIVMEFCS   80 (253)
T ss_pred             CceeeeeeccCCceEEEEEEECCCCcEEEEEEecccchhHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEecCC
Confidence            47778999999999999998764321             45678899999999999999999999999999999999999


Q ss_pred             CCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          167 NNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       167 ~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      +++|.+++.... ..+++..+..++.+++.+|.|||.        +++||+++.++.+||+|||++......
T Consensus        81 ~~~L~~~~~~~~-~~~~~~~~~~i~~~i~~~l~~lh~~~i~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~  151 (253)
T cd05122          81 GGSLKDLLKSTN-QTLTESQIAYVCKELLKGLEYLHSNGIIHRDIKAANILLTSDGEVKLIDFGLSAQLSDT  151 (253)
T ss_pred             CCcHHHHHhhcC-CCCCHHHHHHHHHHHHHHHHHhhcCCEecCCCCHHHEEEccCCeEEEeecccccccccc
Confidence            999999987653 358999999999999999999987        458999999999999999999887654

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=99.81  E-value=4.7e-19  Score=147.35  Aligned_cols=121  Identities=23%  Similarity=0.273  Sum_probs=99.0

Q ss_pred             eeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHH---hcCCCccceEEEEEEeCCeeEEEEeccC
Q 039406          106 LLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIIS---RVHHKHLVSLVGYYTAGSQRMLVYEFVL  166 (243)
Q Consensus       106 ~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~---~l~hp~iv~~~~~~~~~~~~~lv~e~~~  166 (243)
                      .||+|+||.||++....+..                ....+.+|..+++   ..+|+||+.+++++...+..|+||||+.
T Consensus         1 ~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~   80 (279)
T cd05633           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMTYAFHTPDKLCFILDLMN   80 (279)
T ss_pred             CcccCCCeEEEEEEECCCCcEEEEEEEEccccccchHHHHHHHHHHHHHHHhhCCCCcEeEEEEEEecCCeEEEEEecCC
Confidence            48999999999998654321                1223344544433   3479999999999999999999999999


Q ss_pred             CCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          167 NNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       167 ~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      +++|.+++...+  .+++..+..++.|++.||.|||.        +++|||++.++.+||+|||++....
T Consensus        81 ~~~L~~~i~~~~--~l~~~~~~~i~~qi~~al~~lH~~~ivH~dikp~Nil~~~~~~~~l~dfg~~~~~~  148 (279)
T cd05633          81 GGDLHYHLSQHG--VFSEKEMRFYATEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFS  148 (279)
T ss_pred             CCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCcCCCCCCHHHEEECCCCCEEEccCCcceecc
Confidence            999999887554  48999999999999999999986        4589999999999999999997654

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=99.81  E-value=5.3e-19  Score=144.03  Aligned_cols=130  Identities=29%  Similarity=0.378  Sum_probs=114.1

Q ss_pred             CCCccceeeecCceEEEEEEecCCc---------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeC--CeeEEEE
Q 039406          100 GFSDANLLRQDGFGYVHRGVLPNGK---------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAG--SQRMLVY  162 (243)
Q Consensus       100 ~~~~~~~lg~G~~g~V~~~~~~~~~---------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~--~~~~lv~  162 (243)
                      +|...+.||+|++|.||+|....+.               ...+.+.+|+.++++++|+||+++++.+...  +..++||
T Consensus         1 ~~~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~   80 (260)
T cd06606           1 EWTRGELLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPNIVRYYGSERDEEKNTLNIFL   80 (260)
T ss_pred             CceeeeEeeecCceEEEEEEECCCCcEEEEEEeeccccchHHHHHHHHHHHHHHHcCCCCEeeEEEEEecCCCCeEEEEE
Confidence            4777899999999999999876332               1356788999999999999999999999988  8999999


Q ss_pred             eccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCC
Q 039406          163 EFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVN  231 (243)
Q Consensus       163 e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~  231 (243)
                      ||+.+++|.+++....  .+++..+..++.+++.+|.|||+        +++||+++.++.+||+|||++.......
T Consensus        81 e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~l~~~l~~lh~~~~~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~  155 (260)
T cd06606          81 EYVSGGSLSSLLKKFG--KLPEPVIRKYTRQILEGLAYLHSNGIVHRDIKGANILVDSDGVVKLADFGCAKRLGDIE  155 (260)
T ss_pred             EecCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEcCCCCEEEcccccEEeccccc
Confidence            9999999999987654  58999999999999999999987        3589999999999999999999876543

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=99.81  E-value=3.1e-19  Score=149.88  Aligned_cols=130  Identities=26%  Similarity=0.309  Sum_probs=108.1

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCch---------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCC------
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGKE---------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGS------  156 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~---------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~------  156 (243)
                      .++|...+.||+|+||.||+|....+..               ....+.+|+.++++++|+||+++++++....      
T Consensus        11 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   90 (310)
T cd07865          11 VSKYEKLAKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPYNRY   90 (310)
T ss_pred             hhheEEEEEeecCCCEEEEEEEECCCCcEEEEEEEeccCCcCCchhHHHHHHHHHHhCCCCCccceEEEEecccccccCC
Confidence            3689999999999999999998654321               2335578999999999999999999987543      


Q ss_pred             --eeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCcee
Q 039406          157 --QRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKI  226 (243)
Q Consensus       157 --~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~  226 (243)
                        ..++||||+.+ +|.+++..... .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||++..
T Consensus        91 ~~~~~lv~e~~~~-~l~~~l~~~~~-~~~~~~~~~i~~qi~~al~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~  168 (310)
T cd07865          91 KGSFYLVFEFCEH-DLAGLLSNKNV-KFTLSEIKKVMKMLLNGLYYIHRNKILHRDMKAANILITKDGILKLADFGLARA  168 (310)
T ss_pred             CceEEEEEcCCCc-CHHHHHHhccc-CCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEECCCCcEEECcCCCccc
Confidence              45999999965 88877765432 48999999999999999999987        45899999999999999999987


Q ss_pred             cCC
Q 039406          227 ASD  229 (243)
Q Consensus       227 ~~~  229 (243)
                      +..
T Consensus       169 ~~~  171 (310)
T cd07865         169 FSL  171 (310)
T ss_pred             ccC
Confidence            643

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=99.81  E-value=3.3e-21  Score=169.26  Aligned_cols=142  Identities=23%  Similarity=0.319  Sum_probs=120.2

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCch-------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEec
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGKE-------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEF  164 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~-------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  164 (243)
                      .++|+.+.++|.|+||.|||++++.+.+             ....+..|+-+++.++|+|||.+++-|...+.+|++|||
T Consensus        14 ~ddyellqrvgsgTygdvyKaRd~~s~elaavkvVkLep~dd~~~iqqei~~~~dc~h~nivay~gsylr~dklwicMEy   93 (829)
T KOG0576|consen   14 QDDYELLQRVGSGTYGDVYKARDKRSGELAAVKVVKLEPGDDFSGIQQEIGMLRDCRHPNIVAYFGSYLRRDKLWICMEY   93 (829)
T ss_pred             ccchhheeeecCCcccchhhhcccccCchhhheeeeccCCccccccccceeeeecCCCcChHHHHhhhhhhcCcEEEEEe
Confidence            3789999999999999999999877643             345567899999999999999999999999999999999


Q ss_pred             cCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc------CC--CcEEECCCCcEEEeccCCceecCCCCceeee
Q 039406          165 VLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD------DL--ANILLDFKFEAKVADFGLAKIASDVNTHVST  236 (243)
Q Consensus       165 ~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~------~~--~NiLl~~~~~~kl~DFG~a~~~~~~~~~~~~  236 (243)
                      |.+|+|.+..+..+  .+++.++...+++.+.||+|||.      |+  .|||+++.|.+|++|||.+..+...-.. ..
T Consensus        94 cgggslQdiy~~Tg--plselqiayvcRetl~gl~ylhs~gk~hRdiKGanilltd~gDvklaDfgvsaqitati~K-rk  170 (829)
T KOG0576|consen   94 CGGGSLQDIYHVTG--PLSELQIAYVCRETLQGLKYLHSQGKIHRDIKGANILLTDEGDVKLADFGVSAQITATIAK-RK  170 (829)
T ss_pred             cCCCcccceeeecc--cchhHHHHHHHhhhhccchhhhcCCcccccccccceeecccCceeecccCchhhhhhhhhh-hh
Confidence            99999999887655  59999999999999999999976      33  7999999999999999998876532211 12


Q ss_pred             cccccc
Q 039406          237 RVMGTF  242 (243)
Q Consensus       237 ~~~GT~  242 (243)
                      .+.||+
T Consensus       171 sfiGtp  176 (829)
T KOG0576|consen  171 SFIGTP  176 (829)
T ss_pred             cccCCc
Confidence            356664

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=99.81  E-value=3.9e-19  Score=152.67  Aligned_cols=129  Identities=19%  Similarity=0.265  Sum_probs=108.1

Q ss_pred             HhCCCCccceeeecCceEEEEEEecCCc---------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeC------
Q 039406           97 ATDGFSDANLLRQDGFGYVHRGVLPNGK---------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAG------  155 (243)
Q Consensus        97 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~---------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~------  155 (243)
                      ..++|...+.||+|+||.||++....+.               .....+.+|+.++++++|+||++++++|...      
T Consensus        14 ~~~~y~~~~~lg~g~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   93 (353)
T cd07850          14 VLKRYQNLKPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQNVTHAKRAYRELVLMKLVNHKNIIGLLNVFTPQKSLEEF   93 (353)
T ss_pred             hhcceEEEEEeccCCCEEEEEEEECCCCCEEEEEecCccccChhHHHHHHHHHHHHHhcCCCCCcceeeeeccCCCcccc
Confidence            4588999999999999999999765432               1235677899999999999999999988644      


Q ss_pred             CeeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceec
Q 039406          156 SQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIA  227 (243)
Q Consensus       156 ~~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~  227 (243)
                      ...|+||||+.+ +|.+.+...    +++..+..++.|++.||.|||.        +++|||++.++.+||+|||+++..
T Consensus        94 ~~~~lv~e~~~~-~l~~~~~~~----l~~~~~~~~~~ql~~aL~~LH~~gi~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~  168 (353)
T cd07850          94 QDVYLVMELMDA-NLCQVIQMD----LDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTA  168 (353)
T ss_pred             CcEEEEEeccCC-CHHHHHhhc----CCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEECCCCCEEEccCccceeC
Confidence            357999999965 888877532    7888999999999999999987        458999999999999999999876


Q ss_pred             CCC
Q 039406          228 SDV  230 (243)
Q Consensus       228 ~~~  230 (243)
                      ...
T Consensus       169 ~~~  171 (353)
T cd07850         169 GTS  171 (353)
T ss_pred             CCC
Confidence            543

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=99.81  E-value=2.9e-19  Score=148.38  Aligned_cols=127  Identities=22%  Similarity=0.305  Sum_probs=109.5

Q ss_pred             CCccceeeecCceEEEEEEecCCch---------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEecc
Q 039406          101 FSDANLLRQDGFGYVHRGVLPNGKE---------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFV  165 (243)
Q Consensus       101 ~~~~~~lg~G~~g~V~~~~~~~~~~---------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~  165 (243)
                      |+..+.||.|.+|.||+|....+..               ....+.+|++++++++|+||+++++++.+.+..|++|||+
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~~~~iv~~~~~~~~~~~~~iv~e~~   80 (283)
T cd07835           1 YQKVEKIGEGTYGVVYKARDKLTGEIVALKKIRLETEDEGVPSTAIREISLLKELNHPNIVRLLDVVHSENKLYLVFEFL   80 (283)
T ss_pred             CchheEecCCCCeEEEEEEEcCCCCEEEEEEeecccccccchhHHHHHHHHHHhcCCCCccCHhheeccCCeEEEEEecc
Confidence            5678899999999999997654321               2356788999999999999999999999999999999999


Q ss_pred             CCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          166 LNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       166 ~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      . ++|.+++.......+++..++.++.|++.+|.|||.        +++|||++.++.+||+|||+++.+.
T Consensus        81 ~-~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~lH~~~~~H~dl~p~nil~~~~~~~~l~df~~~~~~~  150 (283)
T cd07835          81 D-LDLKKYMDSSPLTGLDPPLIKSYLYQLLQGIAYCHSHRVLHRDLKPQNLLIDREGALKLADFGLARAFG  150 (283)
T ss_pred             C-cCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCHHHEEEcCCCcEEEeecccccccC
Confidence            5 689998876553458999999999999999999987        3589999999999999999998654

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.81  E-value=1.2e-19  Score=147.82  Aligned_cols=134  Identities=21%  Similarity=0.328  Sum_probs=112.9

Q ss_pred             cHHHHHHHhCCCCccceeeecCceEEEEEEecCC-------------chhHHHHHHHHHHHHhc-CCCccceEEEEEEeC
Q 039406           90 TYEELARATDGFSDANLLRQDGFGYVHRGVLPNG-------------KEGEREFQAEVEIISRV-HHKHLVSLVGYYTAG  155 (243)
Q Consensus        90 ~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~-------------~~~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~  155 (243)
                      +++++-+.++     +.||+|+|+.|-.|+...+             ...+.++.+|++++.++ .|+||++|+++|+++
T Consensus        74 ~F~d~YkLt~-----e~LGeGAyasVqtcv~i~t~~EYAVKiidKq~gHsR~RvfREVe~f~~Cqgh~nilqLiefFEdd  148 (463)
T KOG0607|consen   74 KFEDMYKLTS-----ELLGEGAYASVQTCVSIQTGKEYAVKIIDKQPGHSRSRVFREVETFYQCQGHKNILQLIEFFEDD  148 (463)
T ss_pred             hHHHHHHhHH-----HHhcCccceeeeeeeeeccchhhhhhhhhcCCchHHHHHHHHHHHHHHhcCCccHHHHHHHhccc
Confidence            3666666654     5899999999988863322             23577899999999999 599999999999999


Q ss_pred             CeeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCC---CcEEEeccCCc
Q 039406          156 SQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFK---FEAKVADFGLA  224 (243)
Q Consensus       156 ~~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~---~~~kl~DFG~a  224 (243)
                      .++|||||-|.||.|..+|.++.  .+++.++..++.+|+.||.|||.        ||+|||....   .-||||||.++
T Consensus       149 ~~FYLVfEKm~GGplLshI~~~~--~F~E~EAs~vvkdia~aLdFlH~kgIAHRDlKPENiLC~~pn~vsPvKiCDfDLg  226 (463)
T KOG0607|consen  149 TRFYLVFEKMRGGPLLSHIQKRK--HFNEREASRVVKDIASALDFLHTKGIAHRDLKPENILCESPNKVSPVKICDFDLG  226 (463)
T ss_pred             ceEEEEEecccCchHHHHHHHhh--hccHHHHHHHHHHHHHHHHHHhhcCcccccCCccceeecCCCCcCceeeeccccc
Confidence            99999999999999999998765  49999999999999999999986        6799999654   46899999998


Q ss_pred             eecCCC
Q 039406          225 KIASDV  230 (243)
Q Consensus       225 ~~~~~~  230 (243)
                      .-+..+
T Consensus       227 Sg~k~~  232 (463)
T KOG0607|consen  227 SGIKLN  232 (463)
T ss_pred             cccccC
Confidence            765443

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.81  E-value=1.5e-20  Score=175.13  Aligned_cols=130  Identities=25%  Similarity=0.293  Sum_probs=113.4

Q ss_pred             CCCccceeeecCceEEEEEEecCCch---------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEec
Q 039406          100 GFSDANLLRQDGFGYVHRGVLPNGKE---------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEF  164 (243)
Q Consensus       100 ~~~~~~~lg~G~~g~V~~~~~~~~~~---------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  164 (243)
                      ++.....||.|.||.||.|...++.+               ..+.+.+|+.+|..|+|||+|++|++-...+..+|.|||
T Consensus      1236 rWqrg~~Ig~G~fG~VYtavN~~tGellAvKEI~iq~~~~k~~~~i~eEm~vlE~lnHpNlV~YyGVEvHRekv~IFMEy 1315 (1509)
T KOG4645|consen 1236 RWQRGNFIGGGTFGKVYTAVNLDTGELLAVKEIKIQDSDHKTFKLIAEEMKVLEGLNHPNLVRYYGVEVHREKVYIFMEY 1315 (1509)
T ss_pred             eeccccccCCcceeeeEEeecCCccchhhhhhhhcCccccccCcchHHHHHHHHhccCccccccCceeecHHHHHHHHHH
Confidence            46667899999999999998665543               345578899999999999999999999999999999999


Q ss_pred             cCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCC
Q 039406          165 VLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVN  231 (243)
Q Consensus       165 ~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~  231 (243)
                      |++|+|.+.+...+  .+++.....+..|++.|+.|||.        |++|||++.+|.+|++|||.|+.+....
T Consensus      1316 C~~GsLa~ll~~gr--i~dE~vt~vyt~qll~gla~LH~~gIVHRDIK~aNI~Ld~~g~iK~~DFGsa~ki~~~~ 1388 (1509)
T KOG4645|consen 1316 CEGGSLASLLEHGR--IEDEMVTRVYTKQLLEGLAYLHEHGIVHRDIKPANILLDFNGLIKYGDFGSAVKIKNNA 1388 (1509)
T ss_pred             hccCcHHHHHHhcc--hhhhhHHHHHHHHHHHHHHHHHhcCceecCCCccceeeecCCcEEeecccceeEecCch
Confidence            99999999986543  47788888899999999999976        5689999999999999999999986653

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=99.80  E-value=5.4e-19  Score=148.95  Aligned_cols=129  Identities=19%  Similarity=0.273  Sum_probs=107.2

Q ss_pred             CCCccceeeecCceEEEEEEecC--Cch----------------hHHHHHHHHHHHHhcCCCccceEEEEEEeC--CeeE
Q 039406          100 GFSDANLLRQDGFGYVHRGVLPN--GKE----------------GEREFQAEVEIISRVHHKHLVSLVGYYTAG--SQRM  159 (243)
Q Consensus       100 ~~~~~~~lg~G~~g~V~~~~~~~--~~~----------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~--~~~~  159 (243)
                      +|.+.+.||+|+||.||+|....  ...                ..+.+.+|+.++++++|+||+++++++.+.  +.+|
T Consensus         1 ~y~~~~~ig~g~~g~v~~~~~~~~~~~~~~alK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   80 (316)
T cd07842           1 KYEIEGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLRELKHENVVSLVEVFLEHADKSVY   80 (316)
T ss_pred             CceEEEEeccCCcEEEEEEEecCCCCCCeEEEEEeccccccccCccHHHHHHHHHHHhcCCCCccceEEEEeCCCCceEE
Confidence            47788999999999999998765  211                235678899999999999999999999988  7899


Q ss_pred             EEEeccCCCCHHHHhccC---CCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECC----CCcEEEeccCCc
Q 039406          160 LVYEFVLNNTLVFHLHGK---GQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDF----KFEAKVADFGLA  224 (243)
Q Consensus       160 lv~e~~~~g~L~~~l~~~---~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~----~~~~kl~DFG~a  224 (243)
                      +||||+++ +|.+++...   ....+++..++.++.|++.||.|||.        +++|||++.    ++.+||+|||++
T Consensus        81 lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~h~dlkp~Nil~~~~~~~~~~~kl~Dfg~~  159 (316)
T cd07842          81 LLFDYAEH-DLWQIIKFHRQAKRVSIPPSMVKSLLWQILNGVHYLHSNWVLHRDLKPANILVMGEGPERGVVKIGDLGLA  159 (316)
T ss_pred             EEEeCCCc-CHHHHHHhhccCCCcCcCHHHHHHHHHHHHHHHHHHHhCCEeeCCCCHHHEEEcCCCCccceEEECCCccc
Confidence            99999975 676665422   12257888999999999999999987        458999999    899999999999


Q ss_pred             eecCC
Q 039406          225 KIASD  229 (243)
Q Consensus       225 ~~~~~  229 (243)
                      +.+..
T Consensus       160 ~~~~~  164 (316)
T cd07842         160 RLFNA  164 (316)
T ss_pred             cccCC
Confidence            87644

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=99.80  E-value=1.7e-19  Score=153.71  Aligned_cols=128  Identities=16%  Similarity=0.284  Sum_probs=108.9

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc---------------hhHHHHHHHHHHHHhcCCCccceEEEEEEe----CCeeE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK---------------EGEREFQAEVEIISRVHHKHLVSLVGYYTA----GSQRM  159 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~---------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~----~~~~~  159 (243)
                      ++|.+.+.||+|+||.||++....+.               ...+.+.+|+.+|++++|+||+++++++..    ...+|
T Consensus         5 ~~y~~~~~lg~g~~g~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~   84 (334)
T cd07855           5 SRYKPIENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDVPTLAKRTLRELKILRHFKHDNIIAIRDILRPPGADFKDVY   84 (334)
T ss_pred             hceeeeeeeecCCCeEEEEEEEcCCCCEEEEEEeccccccccchHHHHHHHHHHHhcCCCCccCHHHhccccCCCCceEE
Confidence            78999999999999999999765432               134567889999999999999999998763    35789


Q ss_pred             EEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          160 LVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       160 lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      +||||+. ++|.+++....  .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++....
T Consensus        85 lv~e~~~-~~l~~~~~~~~--~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~Nil~~~~~~~kl~dfg~~~~~~~  159 (334)
T cd07855          85 VVMDLME-SDLHHIIHSDQ--PLTEEHIRYFLYQLLRGLKYIHSANVIHRDLKPSNLLVNEDCELRIGDFGMARGLSS  159 (334)
T ss_pred             EEEehhh-hhHHHHhccCC--CCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCcEEecccccceeecc
Confidence            9999995 58998886544  48999999999999999999987        45899999999999999999987643

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=99.80  E-value=5.6e-19  Score=151.30  Aligned_cols=136  Identities=16%  Similarity=0.288  Sum_probs=112.8

Q ss_pred             cHHHHHHHhCCCCccceeeecCceEEEEEEecCCch---------------hHHHHHHHHHHHHhcCCCccceEEEEEEe
Q 039406           90 TYEELARATDGFSDANLLRQDGFGYVHRGVLPNGKE---------------GEREFQAEVEIISRVHHKHLVSLVGYYTA  154 (243)
Q Consensus        90 ~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~---------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~  154 (243)
                      ...++....++|...+.||+|+||.||++....+.+               ..+.+.+|+.++++++|+||+++++++..
T Consensus         8 ~~~~~~~~~~~y~~~~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~iv~~~~~~~~   87 (345)
T cd07877           8 LNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTP   87 (345)
T ss_pred             HHHHHhhccCceEEEEEeeecCCeEEEEEEEcCCCeEEEEEEecCcchhhHHHHHHHHHHHHHHHcCCCcccceeeeeee
Confidence            345666778999999999999999999997654321               23567789999999999999999998864


Q ss_pred             C------CeeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEec
Q 039406          155 G------SQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVAD  220 (243)
Q Consensus       155 ~------~~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~D  220 (243)
                      .      +..|++++++ +++|.+++...   .+++..++.++.|++.||.|||.        +++||+++.++.+||+|
T Consensus        88 ~~~~~~~~~~~lv~~~~-~~~L~~~~~~~---~l~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIll~~~~~~kl~d  163 (345)
T cd07877          88 ARSLEEFNDVYLVTHLM-GADLNNIVKCQ---KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILD  163 (345)
T ss_pred             cccccccccEEEEehhc-ccCHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHCCeeecCCChHHEEEcCCCCEEEec
Confidence            3      3478899987 77998887543   38999999999999999999987        46899999999999999


Q ss_pred             cCCceecCC
Q 039406          221 FGLAKIASD  229 (243)
Q Consensus       221 FG~a~~~~~  229 (243)
                      ||+++....
T Consensus       164 fg~~~~~~~  172 (345)
T cd07877         164 FGLARHTDD  172 (345)
T ss_pred             ccccccccc
Confidence            999987543

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=99.80  E-value=3.2e-19  Score=145.64  Aligned_cols=131  Identities=21%  Similarity=0.294  Sum_probs=112.1

Q ss_pred             CCCccceeeecCceEEEEEEecCCc---------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEec
Q 039406          100 GFSDANLLRQDGFGYVHRGVLPNGK---------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEF  164 (243)
Q Consensus       100 ~~~~~~~lg~G~~g~V~~~~~~~~~---------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  164 (243)
                      +|.+.+.||+|+||.||++....+.               .....+.+|++++++++|+||+++++++.+....|+||||
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~   80 (256)
T cd08530           1 DFKVLKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPNIISYKEAFLDGNKLCIVMEY   80 (256)
T ss_pred             CceEeeeecCCCceeEEEEEECCCCCEEEEEEEehhhccHHHHHHHHHHHHHHHhCCCCCchhhhhhhccCCEEEEEehh
Confidence            4778899999999999999765432               1345677899999999999999999999999999999999


Q ss_pred             cCCCCHHHHhccCC--CCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          165 VLNNTLVFHLHGKG--QPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       165 ~~~g~L~~~l~~~~--~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      +.+++|.+++....  ...+++..+..++.+++.||.|||.        +++||+++.++.+||+|||+++.....
T Consensus        81 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lh~~~i~h~~l~~~ni~~~~~~~~kl~d~g~~~~~~~~  156 (256)
T cd08530          81 APFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALHEQKILHRDLKSANILLVANDLVKIGDLGISKVLKKN  156 (256)
T ss_pred             cCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhCCcccCCCCcceEEEecCCcEEEeeccchhhhccC
Confidence            99999999886521  2358899999999999999999987        468999999999999999999876543

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=99.80  E-value=1e-18  Score=147.95  Aligned_cols=128  Identities=30%  Similarity=0.368  Sum_probs=108.4

Q ss_pred             CCCccceeeecCceEEEEEEecCCc----------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEe
Q 039406          100 GFSDANLLRQDGFGYVHRGVLPNGK----------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYE  163 (243)
Q Consensus       100 ~~~~~~~lg~G~~g~V~~~~~~~~~----------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e  163 (243)
                      .|...+.||+|+||.||+++...+.                +....+.+|+.+|++++|+|++++++++.+++..|+|||
T Consensus        26 ~f~~~~~lg~G~~~~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e  105 (317)
T cd06635          26 LFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKHPNSIEYKGCYLREHTAWLVME  105 (317)
T ss_pred             hhhhhheeccCCCeEEEEEEEcCCCcEEEEEEEecCCCCchHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCCeEEEEEe
Confidence            3777889999999999999764321                134568889999999999999999999999999999999


Q ss_pred             ccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          164 FVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       164 ~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      |+.+ +|.+++..... .+++..+..++.+++.+|.|||.        +++||+++.++.+||+|||++.....
T Consensus       106 ~~~g-~l~~~~~~~~~-~l~~~~~~~i~~~i~~~l~~lH~~~i~H~dL~p~Nil~~~~~~~kl~dfg~~~~~~~  177 (317)
T cd06635         106 YCLG-SASDLLEVHKK-PLQEVEIAAITHGALQGLAYLHSHNMIHRDIKAGNILLTEPGQVKLADFGSASIASP  177 (317)
T ss_pred             CCCC-CHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCcccEEECCCCCEEEecCCCccccCC
Confidence            9965 77777654333 48999999999999999999987        46899999999999999999876543

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=99.80  E-value=2.7e-19  Score=146.53  Aligned_cols=120  Identities=23%  Similarity=0.307  Sum_probs=105.3

Q ss_pred             eeecCceEEEEEEecCCc----------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccCCCCH
Q 039406          107 LRQDGFGYVHRGVLPNGK----------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTL  170 (243)
Q Consensus       107 lg~G~~g~V~~~~~~~~~----------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~g~L  170 (243)
                      ||.|+||.||+++...+.                ...+.+.+|+.++++++|+||+++++.+...+..|+||||+.+++|
T Consensus         1 lg~g~~~~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (265)
T cd05579           1 ISKGAYGRVFLAKKKSTGDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYVVKLYYSFQGKKNLYLVMEYLPGGDL   80 (265)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEecchhhhhhhHHHHHHHHHHHHHhCCCcchhHHHHheecCcEEEEEEecCCCCcH
Confidence            688999999999876422                1345688899999999999999999999999999999999999999


Q ss_pred             HHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          171 VFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       171 ~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      .+++...+  .+++..+..++.|++.+|.|||.        +++||+++.++.+||+|||++....
T Consensus        81 ~~~l~~~~--~~~~~~~~~i~~qi~~~L~~lH~~~i~H~di~~~nil~~~~~~~~l~dfg~~~~~~  144 (265)
T cd05579          81 ASLLENVG--SLDEDVARIYIAEIVLALEYLHSNGIIHRDLKPDNILIDSNGHLKLTDFGLSKVGL  144 (265)
T ss_pred             HHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHcCeecCCCCHHHeEEcCCCCEEEEecccchhcc
Confidence            99997654  48999999999999999999986        3479999999999999999988654

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=99.80  E-value=3.8e-19  Score=151.34  Aligned_cols=131  Identities=21%  Similarity=0.322  Sum_probs=110.0

Q ss_pred             HHHHhCCCCccceeeecCceEEEEEEecCCc---------------hhHHHHHHHHHHHHhcCCCccceEEEEEEe-CCe
Q 039406           94 LARATDGFSDANLLRQDGFGYVHRGVLPNGK---------------EGEREFQAEVEIISRVHHKHLVSLVGYYTA-GSQ  157 (243)
Q Consensus        94 ~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~---------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~~  157 (243)
                      +..++++|...+.||+|+||.||++....+.               ...+.+.+|+++++.++||||++++++|.. .+.
T Consensus         5 ~~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~   84 (328)
T cd07856           5 VFEITNRYVDLQPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFSTPVLAKRTYRELKLLKHLRHENIISLSDIFISPLED   84 (328)
T ss_pred             eeccccceEEEEeecccCCeEEEEEEECCCCCEEEEEEecccccccchhHHHHHHHHHHHhcCCCCeeeEeeeEecCCCc
Confidence            3446789999999999999999999755332               134567889999999999999999999875 567


Q ss_pred             eEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          158 RMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       158 ~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      .|+||||+ +++|..++...   .+.+..+..++.|++.||.|||.        +++|||++.++.+||+|||++....
T Consensus        85 ~~lv~e~~-~~~L~~~~~~~---~~~~~~~~~~~~ql~~aL~~LH~~~iiH~dl~p~Nili~~~~~~~l~dfg~~~~~~  159 (328)
T cd07856          85 IYFVTELL-GTDLHRLLTSR---PLEKQFIQYFLYQILRGLKYVHSAGVVHRDLKPSNILINENCDLKICDFGLARIQD  159 (328)
T ss_pred             EEEEeehh-ccCHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEeECCCCCEEeCccccccccC
Confidence            89999999 56898888643   37888888999999999999987        4589999999999999999998654

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=99.80  E-value=1e-18  Score=145.21  Aligned_cols=121  Identities=23%  Similarity=0.273  Sum_probs=98.6

Q ss_pred             eeeecCceEEEEEEecCCch----------------hHHHHHHHHH---HHHhcCCCccceEEEEEEeCCeeEEEEeccC
Q 039406          106 LLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVE---IISRVHHKHLVSLVGYYTAGSQRMLVYEFVL  166 (243)
Q Consensus       106 ~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~---~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~  166 (243)
                      .||+|+||.||++......+                ....+..|..   ++...+|+||+++++++...+..|+||||+.
T Consensus         1 ~ig~g~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~   80 (278)
T cd05606           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLMN   80 (278)
T ss_pred             CcccCCCeEEEEEEEecCCCEEEEEEeeccccccchhHHHHHHHHHHHHHHHhCCCCcEeeeeeeeecCCEEEEEEecCC
Confidence            48999999999997654321                1122334433   3445689999999999999999999999999


Q ss_pred             CCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          167 NNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       167 ~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      +++|.+++...+  .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++.+.
T Consensus        81 g~~L~~~l~~~~--~l~~~~~~~~~~ql~~~l~~lH~~~i~H~di~p~nili~~~~~~kl~dfg~~~~~~  148 (278)
T cd05606          81 GGDLHYHLSQHG--VFSEAEMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFS  148 (278)
T ss_pred             CCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCEEcCCCCHHHEEECCCCCEEEccCcCccccC
Confidence            999999886543  58999999999999999999986        4589999999999999999997654

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=99.80  E-value=3.8e-19  Score=147.59  Aligned_cols=128  Identities=22%  Similarity=0.286  Sum_probs=109.3

Q ss_pred             CCccceeeecCceEEEEEEecCCch--------------hHHHHHHHHHHHHhcC-CCccceEEEEEEeCCeeEEEEecc
Q 039406          101 FSDANLLRQDGFGYVHRGVLPNGKE--------------GEREFQAEVEIISRVH-HKHLVSLVGYYTAGSQRMLVYEFV  165 (243)
Q Consensus       101 ~~~~~~lg~G~~g~V~~~~~~~~~~--------------~~~~~~~E~~~l~~l~-hp~iv~~~~~~~~~~~~~lv~e~~  165 (243)
                      |.+.+.||+|+||.||+|+...+.+              ......+|+..+++++ |+||+++++++..++..|+||||+
T Consensus         1 y~~~~~ig~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e~~   80 (283)
T cd07830           1 YKVIKQLGDGTFGSVYLARNKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNEHPNIVKLKEVFRENDELYFVFEYM   80 (283)
T ss_pred             CeeheeeccCCceEEEEEEECCCCcEEEEEEehhhccchhHHHHHHHHHHHHhccCCCCchhHHHHhhcCCcEEEEEecC
Confidence            5677899999999999998765321              1223467999999998 999999999999999999999999


Q ss_pred             CCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          166 LNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       166 ~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                       +++|.+++.......+++..++.++.|++.+|.|||.        +++||+++.++.+||+|||+++....
T Consensus        81 -~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lh~~~i~H~dl~~~ni~i~~~~~~~l~d~~~~~~~~~  151 (283)
T cd07830          81 -EGNLYQLMKDRKGKPFSESVIRSIIYQILQGLAHIHKHGFFHRDLKPENLLVSGPEVVKIADFGLAREIRS  151 (283)
T ss_pred             -CCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHCCcccCCCChhhEEEcCCCCEEEeecccceeccC
Confidence             7799988876543458999999999999999999987        45899999999999999999987654

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=99.80  E-value=3.3e-19  Score=146.32  Aligned_cols=129  Identities=17%  Similarity=0.234  Sum_probs=107.5

Q ss_pred             CCCccceeeecCceEEEEEEecCCc------------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEE
Q 039406          100 GFSDANLLRQDGFGYVHRGVLPNGK------------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLV  161 (243)
Q Consensus       100 ~~~~~~~lg~G~~g~V~~~~~~~~~------------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv  161 (243)
                      +|.+.+.||+|+||.||+++.....                  .....+.+|+.++++++|+||+++++++.+....++|
T Consensus         1 ~y~i~~~ig~g~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   80 (260)
T cd08222           1 RYILQQRLGKGSFGTVYLVKDKKAVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKLDHPAIVKFHASFLERDAFCII   80 (260)
T ss_pred             CceeeeeecCCCCceEEEEEecCCCCcceEEEeccccccccCcchHHHHHHHHHHHHhCCCCcHHHHHHHHhcCCceEEE
Confidence            4778899999999999998765421                  1223466789999999999999999999999999999


Q ss_pred             EeccCCCCHHHHhcc--CCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          162 YEFVLNNTLVFHLHG--KGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       162 ~e~~~~g~L~~~l~~--~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      |||+.+++|.+++..  .....+++..++.++.|++.||.|||.        +++||+++. +.+||+|||+++.+..
T Consensus        81 ~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~h~~l~~~nili~~-~~~~l~d~g~~~~~~~  157 (260)
T cd08222          81 TEYCEGRDLDCKLEELKHTGKTLSENQVCEWFIQLLLGVHYMHQRRILHRDLKAKNIFLKN-NLLKIGDFGVSRLLMG  157 (260)
T ss_pred             EEeCCCCCHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHHcCccccCCChhheEeec-CCEeecccCceeecCC
Confidence            999999999988753  122358999999999999999999987        458999975 5699999999987643

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=99.80  E-value=1.2e-18  Score=143.93  Aligned_cols=137  Identities=20%  Similarity=0.238  Sum_probs=108.2

Q ss_pred             HHHHHHHhCCCCcccee--eecCceEEEEEEecCCch-------hHHHH-HHHHHHHHhc-CCCccceEEEEEEeCCeeE
Q 039406           91 YEELARATDGFSDANLL--RQDGFGYVHRGVLPNGKE-------GEREF-QAEVEIISRV-HHKHLVSLVGYYTAGSQRM  159 (243)
Q Consensus        91 ~~~~~~~~~~~~~~~~l--g~G~~g~V~~~~~~~~~~-------~~~~~-~~E~~~l~~l-~hp~iv~~~~~~~~~~~~~  159 (243)
                      ..+.....++|.+.+.+  |+|+||.||++..+.+..       ....+ ..|+.....+ +|+||+++++++...+..|
T Consensus         6 ~~~~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~e~~~~~~~~~h~~iv~~~~~~~~~~~~~   85 (267)
T PHA03390          6 LSELVQFLKNCEIVKKLKLIDGKFGKVSVLKHKPTQKLFVQKIIKAKNFNAIEPMVHQLMKDNPNFIKLYYSVTTLKGHV   85 (267)
T ss_pred             HHHHHHHHHhhccccceeecCCCceEEEEEEEcCCCcEEEEEEEehhhcchhhHHHHHHhhcCCCEEEEEEEEecCCeeE
Confidence            34455556777777776  999999999998765432       01111 1133333323 7999999999999999999


Q ss_pred             EEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCC-cEEEeccCCceecCC
Q 039406          160 LVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKF-EAKVADFGLAKIASD  229 (243)
Q Consensus       160 lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~-~~kl~DFG~a~~~~~  229 (243)
                      +||||+++++|.+++....  .+++..++.++.|++.||.|||.        +++||+++.++ .++|+|||+++....
T Consensus        86 iv~e~~~~~~L~~~l~~~~--~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~~l~dfg~~~~~~~  162 (267)
T PHA03390         86 LIMDYIKDGDLFDLLKKEG--KLSEAEVKKIIRQLVEALNDLHKHNIIHNDIKLENVLYDRAKDRIYLCDYGLCKIIGT  162 (267)
T ss_pred             EEEEcCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEEeCCCCeEEEecCccceecCC
Confidence            9999999999999997654  58999999999999999999987        45899999988 999999999987653

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=99.80  E-value=4.6e-19  Score=151.31  Aligned_cols=129  Identities=18%  Similarity=0.337  Sum_probs=108.5

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCc---------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeC-----Ce
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGK---------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAG-----SQ  157 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~---------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~-----~~  157 (243)
                      .++|...+.||+|+||.||+++...+.               .....+.+|+.+|+.++|+||+++++++...     ..
T Consensus         4 ~~~y~~~~~lg~G~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni~~~~~~~~~~~~~~~~~   83 (337)
T cd07858           4 DTKYVPIKPIGRGAYGIVCSAKNSETNEKVAIKKIANAFDNRIDAKRTLREIKLLRHLDHENVIAIKDIMPPPHREAFND   83 (337)
T ss_pred             ccceeEEEEeccCCCeEEEEEEecCCCCeEEEEEecccccccchhHHHHHHHHHHHhcCCCCccchHHheecccccccCc
Confidence            367999999999999999999765432               1345677899999999999999999987644     35


Q ss_pred             eEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          158 RMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       158 ~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      .|+||||+. ++|.+++...+  .+++..+..++.|++.||.|||.        +++|||++.++.+||+|||+++....
T Consensus        84 ~~lv~e~~~-~~L~~~~~~~~--~l~~~~~~~i~~qi~~aL~~LH~~~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~  160 (337)
T cd07858          84 VYIVYELMD-TDLHQIIRSSQ--TLSDDHCQYFLYQLLRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLARTTSE  160 (337)
T ss_pred             EEEEEeCCC-CCHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCEEECcCccccccCC
Confidence            899999995 68988886543  48999999999999999999987        45899999999999999999987644

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=99.79  E-value=5.6e-19  Score=150.65  Aligned_cols=128  Identities=19%  Similarity=0.331  Sum_probs=107.5

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCc--------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeC-----Cee
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGK--------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAG-----SQR  158 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~--------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~-----~~~  158 (243)
                      .++|.+.+.||+|+||.||+|+...+.              .....+.+|+.+|++++|+||+++++++...     ...
T Consensus         4 ~~~y~i~~~lg~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~   83 (336)
T cd07849           4 GPRYQNLSYIGEGAYGMVCSATHKPTGVKVAIKKISPFEHQTFCQRTLREIKILRRFKHENIIGILDIIRPPSFESFNDV   83 (336)
T ss_pred             ccceEEEEEEEecCCeEEEEEEEcCCCCeEEEEEecccccchhHHHHHHHHHHHHhCCCCCcCchhheeecccccccceE
Confidence            478999999999999999999765432              1345678899999999999999999887644     358


Q ss_pred             EEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          159 MLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       159 ~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      |+||||+.+ +|.+++...   .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++....
T Consensus        84 ~lv~e~~~~-~l~~~~~~~---~l~~~~~~~i~~ql~~aL~~LH~~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~  158 (336)
T cd07849          84 YIVQELMET-DLYKLIKTQ---HLSNDHIQYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTNCDLKICDFGLARIADP  158 (336)
T ss_pred             EEEehhccc-CHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEECCCCCEEECcccceeeccc
Confidence            999999965 888877543   48999999999999999999987        45899999999999999999987643

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=99.79  E-value=1.1e-18  Score=143.99  Aligned_cols=128  Identities=24%  Similarity=0.364  Sum_probs=104.6

Q ss_pred             CCccceeeecCceEEEEEEecCC------------------chhHHHHHHHHHHHHhcCCCccceEEEEEEeCC------
Q 039406          101 FSDANLLRQDGFGYVHRGVLPNG------------------KEGEREFQAEVEIISRVHHKHLVSLVGYYTAGS------  156 (243)
Q Consensus       101 ~~~~~~lg~G~~g~V~~~~~~~~------------------~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~------  156 (243)
                      |.+.+.||+|+||.||+|.+...                  ....+.+.+|+.+|++++|+||+++++++....      
T Consensus         1 ~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   80 (273)
T cd05074           1 FTLGRMLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADIFSSSDIEEFLREAACMKEFDHPNVIKLIGVSLRSRAKGRLP   80 (273)
T ss_pred             CcchhcccCCCCCCEEeeEeeccCCCceEEEEEEeccccCChHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCCCCccc
Confidence            56678999999999999975431                  113456889999999999999999999886532      


Q ss_pred             eeEEEEeccCCCCHHHHhccC----CCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCc
Q 039406          157 QRMLVYEFVLNNTLVFHLHGK----GQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLA  224 (243)
Q Consensus       157 ~~~lv~e~~~~g~L~~~l~~~----~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a  224 (243)
                      ..++++||+.+|+|.+++...    ....+++..++.++.|++.||.|||.        +++|||++.++.+||+|||++
T Consensus        81 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~nili~~~~~~kl~dfg~~  160 (273)
T cd05074          81 IPMVILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRFMIDIASGMEYLSSKNFIHRDLAARNCMLNENMTVCVADFGLS  160 (273)
T ss_pred             ceEEEEecCCCCcHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCEeecccchhhEEEcCCCCEEECccccc
Confidence            247899999999998876422    11247888999999999999999987        468999999999999999999


Q ss_pred             eecC
Q 039406          225 KIAS  228 (243)
Q Consensus       225 ~~~~  228 (243)
                      +.+.
T Consensus       161 ~~~~  164 (273)
T cd05074         161 KKIY  164 (273)
T ss_pred             cccc
Confidence            8764

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=99.79  E-value=1.5e-18  Score=143.83  Aligned_cols=126  Identities=17%  Similarity=0.198  Sum_probs=104.2

Q ss_pred             CCccceeeecCceEEEEEEecCCch--------------hHHHHHHHHHHHHhcC-CCccceEEEEEEeC--CeeEEEEe
Q 039406          101 FSDANLLRQDGFGYVHRGVLPNGKE--------------GEREFQAEVEIISRVH-HKHLVSLVGYYTAG--SQRMLVYE  163 (243)
Q Consensus       101 ~~~~~~lg~G~~g~V~~~~~~~~~~--------------~~~~~~~E~~~l~~l~-hp~iv~~~~~~~~~--~~~~lv~e  163 (243)
                      |.+.+.||+|+||.||++....+..              ......+|+.++.++. |+||+++++++.+.  +.+++|||
T Consensus         1 y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~lv~e   80 (282)
T cd07831           1 YKILGKIGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKSLEQVNNLREIQALRRLSPHPNILRLIEVLFDRKTGRLALVFE   80 (282)
T ss_pred             CceEeeccccccceEEEEEEcCCCcEEEEEEehhccCCchhhhHHHHHHHHhhcCCCCCccceEEEEecCCCCcEEEEEe
Confidence            5677899999999999997654321              1223457888999885 99999999999987  88999999


Q ss_pred             ccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          164 FVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       164 ~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      |+.+ +|.+++..... .+++..++.++.|++.||.|||.        +++||+++. +.+||+|||+++.+..
T Consensus        81 ~~~~-~l~~~l~~~~~-~~~~~~~~~~~~qi~~~L~~LH~~~i~H~dl~p~ni~l~~-~~~kl~dfg~~~~~~~  151 (282)
T cd07831          81 LMDM-NLYELIKGRKR-PLPEKRVKSYMYQLLKSLDHMHRNGIFHRDIKPENILIKD-DILKLADFGSCRGIYS  151 (282)
T ss_pred             cCCc-cHHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHHHCCceecccCHHHEEEcC-CCeEEEeccccccccc
Confidence            9975 88777765432 58999999999999999999987        458999999 9999999999987643

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=99.79  E-value=1.8e-18  Score=141.89  Aligned_cols=122  Identities=18%  Similarity=0.187  Sum_probs=100.3

Q ss_pred             ceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHH-HhcCCCccceEEEEEEeCCeeEEEEeccCC
Q 039406          105 NLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEII-SRVHHKHLVSLVGYYTAGSQRMLVYEFVLN  167 (243)
Q Consensus       105 ~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l-~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~  167 (243)
                      +.||+|+||.||+|......+                ....+..|..++ ..++|+||+++++++..++.+|+||||+.+
T Consensus         2 ~~l~~g~~~~v~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   81 (260)
T cd05611           2 KPISKGAFGSVYLAKKRSTGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYVAKLYYSFQSKDYLYLVMEYLNG   81 (260)
T ss_pred             ccCCcCCCeeEEEEEecCCCCeEEEEEecchhhhHHHHHHHHHHHHHHHhhcCCCCCeeeeeeeEEcCCeEEEEEeccCC
Confidence            579999999999997654321                112234454444 445899999999999999999999999999


Q ss_pred             CCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          168 NTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       168 g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      ++|.+++....  .+++..+..++.|++.||.|||.        +++|||++.++.+||+|||+++...
T Consensus        82 ~~L~~~l~~~~--~~~~~~~~~i~~qi~~aL~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~  148 (260)
T cd05611          82 GDCASLIKTLG--GLPEDWAKQYIAEVVLGVEDLHQRGIIHRDIKPENLLIDQTGHLKLTDFGLSRNGL  148 (260)
T ss_pred             CCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCcEEEeecccceecc
Confidence            99999987544  48889999999999999999987        4589999999999999999998654

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=99.79  E-value=2e-18  Score=143.30  Aligned_cols=129  Identities=23%  Similarity=0.290  Sum_probs=106.9

Q ss_pred             CCccceeeecCceEEEEEEecCCch---------------hHHHHHHHHHHHHhc---CCCccceEEEEEEeCCe-----
Q 039406          101 FSDANLLRQDGFGYVHRGVLPNGKE---------------GEREFQAEVEIISRV---HHKHLVSLVGYYTAGSQ-----  157 (243)
Q Consensus       101 ~~~~~~lg~G~~g~V~~~~~~~~~~---------------~~~~~~~E~~~l~~l---~hp~iv~~~~~~~~~~~-----  157 (243)
                      |.+.+.||+|+||.||+++.+.+..               ....+.+|+.+++++   +|+||+++++++...+.     
T Consensus         1 y~~~~~l~~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~~~   80 (287)
T cd07838           1 YEELAEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSEEGIPLSTLREIALLKQLESFEHPNIVRLLDVCHGPRTDRELK   80 (287)
T ss_pred             CeEEEEecccCceEEEEEEECCCCCEEEEEEeccccccchhhhhHHHHHHHHHHhhccCCCCcceEEEEEeeccCCCCce
Confidence            5678899999999999998765321               123466788877766   59999999999988776     


Q ss_pred             eEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          158 RMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       158 ~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      ++++|||+.+ +|.+++.......+++..++.++.+++.||.|||.        +++|||++.++.+||+|||++..+..
T Consensus        81 ~~l~~e~~~~-~l~~~l~~~~~~~l~~~~~~~~~~~i~~al~~LH~~~i~h~~l~~~nili~~~~~~~l~dfg~~~~~~~  159 (287)
T cd07838          81 LTLVFEHVDQ-DLATYLSKCPKPGLPPETIKDLMRQLLRGVDFLHSHRIVHRDLKPQNILVTSDGQVKIADFGLARIYSF  159 (287)
T ss_pred             eEEEehhccc-CHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCChhhEEEccCCCEEEeccCcceeccC
Confidence            9999999965 89888866444458999999999999999999987        45899999999999999999988754


Q ss_pred             C
Q 039406          230 V  230 (243)
Q Consensus       230 ~  230 (243)
                      .
T Consensus       160 ~  160 (287)
T cd07838         160 E  160 (287)
T ss_pred             C
Confidence            3

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=99.79  E-value=1.2e-18  Score=148.54  Aligned_cols=127  Identities=24%  Similarity=0.299  Sum_probs=107.3

Q ss_pred             CCCC-ccceeeecCceEEEEEEecCCch-----------h----------------HHHHHHHHHHHHhcCCCccceEEE
Q 039406           99 DGFS-DANLLRQDGFGYVHRGVLPNGKE-----------G----------------EREFQAEVEIISRVHHKHLVSLVG  150 (243)
Q Consensus        99 ~~~~-~~~~lg~G~~g~V~~~~~~~~~~-----------~----------------~~~~~~E~~~l~~l~hp~iv~~~~  150 (243)
                      ++|. +.+.||.|+||.||+++.....+           .                ...+.+|+++|++++|+||+++++
T Consensus         8 ~ry~~~~~~ig~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~   87 (335)
T PTZ00024          8 ERYIQKGAHLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEIKHENIMGLVD   87 (335)
T ss_pred             cchhhhhhcccCCCceeEEEEEECCCCCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHhCCCcceeeeeE
Confidence            5565 35779999999999998654321           0                124678999999999999999999


Q ss_pred             EEEeCCeeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccC
Q 039406          151 YYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFG  222 (243)
Q Consensus       151 ~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG  222 (243)
                      ++...+..|+||||+. ++|.+++....  .+++.....++.|++.||.|||.        +++|||++.++.+||+|||
T Consensus        88 ~~~~~~~~~lv~e~~~-~~l~~~l~~~~--~~~~~~~~~~~~ql~~aL~~LH~~~i~H~dl~~~nill~~~~~~kl~dfg  164 (335)
T PTZ00024         88 VYVEGDFINLVMDIMA-SDLKKVVDRKI--RLTESQVKCILLQILNGLNVLHKWYFMHRDLSPANIFINSKGICKIADFG  164 (335)
T ss_pred             EEecCCcEEEEEeccc-cCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCCeecccccHHHeEECCCCCEEECCcc
Confidence            9999999999999996 58998886543  48899999999999999999987        3589999999999999999


Q ss_pred             CceecC
Q 039406          223 LAKIAS  228 (243)
Q Consensus       223 ~a~~~~  228 (243)
                      +++...
T Consensus       165 ~~~~~~  170 (335)
T PTZ00024        165 LARRYG  170 (335)
T ss_pred             ceeecc
Confidence            998765

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=99.79  E-value=3.9e-18  Score=144.16  Aligned_cols=126  Identities=27%  Similarity=0.358  Sum_probs=106.4

Q ss_pred             CCccceeeecCceEEEEEEecCCc----------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEec
Q 039406          101 FSDANLLRQDGFGYVHRGVLPNGK----------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEF  164 (243)
Q Consensus       101 ~~~~~~lg~G~~g~V~~~~~~~~~----------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  164 (243)
                      |...+.||+|+||.||+|+...+.                ...+.+.+|+.+++.++|+|++++++++.+....|+||||
T Consensus        23 ~~~~~~lg~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~  102 (313)
T cd06633          23 FVGLHEIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKHPNTIEYKGCYLKEHTAWLVMEY  102 (313)
T ss_pred             hhcceeeccCCCeEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEEec
Confidence            666788999999999999754332                1335678899999999999999999999999999999999


Q ss_pred             cCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          165 VLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       165 ~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      +. ++|.+++..... .+++..++.++.|++.+|.|||.        +++||+++.++.+||+|||++....
T Consensus       103 ~~-~~l~~~l~~~~~-~l~~~~~~~~~~qi~~al~~LH~~gi~H~dl~p~nili~~~~~~kL~dfg~~~~~~  172 (313)
T cd06633         103 CL-GSASDLLEVHKK-PLQEVEIAAITHGALQGLAYLHSHNMIHRDIKAGNILLTEPGQVKLADFGSASKSS  172 (313)
T ss_pred             CC-CCHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHHHCCeecCCCChhhEEECCCCCEEEeecCCCcccC
Confidence            96 577777754433 48999999999999999999987        4689999999999999999987543

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=99.78  E-value=2.2e-19  Score=138.25  Aligned_cols=131  Identities=21%  Similarity=0.299  Sum_probs=106.3

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCc--------------hhHHHHHHHHHHHHhc-CCCccceEEEEEEeCCeeEEEE
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGK--------------EGEREFQAEVEIISRV-HHKHLVSLVGYYTAGSQRMLVY  162 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~--------------~~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~~~lv~  162 (243)
                      .++......||+|+||.|-+.++..+.              +..+++++|+.+..+. .+|++|.+||.+...+.+||.|
T Consensus        45 ad~L~~i~elGrGayG~vekmrh~~sg~imAvKri~~tvn~q~q~r~L~dldi~~r~~~CPf~V~FyGa~~regdvwIcM  124 (282)
T KOG0984|consen   45 ADDLVGIEELGRGAYGVVEKMRHIQSGTIMAVKRIRATVNSQEQKRLLMDLDIIMRTVDCPFTVHFYGALFREGDVWICM  124 (282)
T ss_pred             hhhhhhhhhhcCCccchhhheeeccCCeEEEEeeehhhcChHHHHHHHHhhhhhccCCCCCeEEEeehhhhccccEEEeH
Confidence            355666788999999998777655432              2456778888876655 7999999999999999999999


Q ss_pred             eccCCCCHHHHhcc--CCCCCCCHHHHHHHHHHHHHhhhHhhc---------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          163 EFVLNNTLVFHLHG--KGQPTMDWPTRIKIALGSAKGLAYLHD---------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       163 e~~~~g~L~~~l~~--~~~~~l~~~~~~~i~~~i~~~l~~lH~---------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      |.|.- +|..+..+  ......++..+-+|+..+++||+|||.         ||+||||+.+|++||||||++-.+.+
T Consensus       125 E~M~t-Sldkfy~~v~~~g~~ipE~vlGkIa~Svv~al~~L~~kL~vIHRDvKPsNiLIn~~GqVKiCDFGIsG~L~d  201 (282)
T KOG0984|consen  125 ELMDT-SLDKFYRKVLKKGGTIPEDVLGKIAVSVVHALEFLHSKLSVIHRDVKPSNILINYDGQVKICDFGISGYLVD  201 (282)
T ss_pred             HHhhh-hHHHHHHHHHhcCCcCchHHhhHhHHHHHHHHHHHHHHhhhhhccCCcceEEEccCCcEEEcccccceeehh
Confidence            99954 88766543  223468899999999999999999976         56999999999999999999988754

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=99.78  E-value=9e-19  Score=145.89  Aligned_cols=130  Identities=20%  Similarity=0.277  Sum_probs=105.3

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc--------------hhHHHHHHHHHHHHhcC-CCccceEEEEEEeCCeeEEEEe
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK--------------EGEREFQAEVEIISRVH-HKHLVSLVGYYTAGSQRMLVYE  163 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~--------------~~~~~~~~E~~~l~~l~-hp~iv~~~~~~~~~~~~~lv~e  163 (243)
                      ++|...+.||+|+||.||++....+.              .....+.+|+.++.++. |+||+++++++..++..+++||
T Consensus         4 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~~~~~~~iv~~~~~~~~~~~~~~~~e   83 (288)
T cd06616           4 EDLKDLGEIGRGAFGTVNKMLHKPSGTIMAVKRIRSTVDEKEQKRLLMDLDVVMRSSDCPYIVKFYGALFREGDCWICME   83 (288)
T ss_pred             HHhHHHHHhCCCCceEEEEEEECCCCCEEEEEEehhccChHHHHHHHHHHHHHHHhcCCCCEeeeeeEEecCCcEEEEEe
Confidence            45666789999999999999865432              13456788999999996 9999999999999999999999


Q ss_pred             ccCCCCHHHH---hccCCCCCCCHHHHHHHHHHHHHhhhHhhc---------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          164 FVLNNTLVFH---LHGKGQPTMDWPTRIKIALGSAKGLAYLHD---------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       164 ~~~~g~L~~~---l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~---------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      |+.. +|.++   +.......+++..+..++.+++.||+|||.         +++|||++.++.+||+|||+++.+..
T Consensus        84 ~~~~-~l~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~  160 (288)
T cd06616          84 LMDI-SLDKFYKYVYEVLKSVIPEEILGKIAVATVKALNYLKEELKIIHRDVKPSNILLDRNGNIKLCDFGISGQLVD  160 (288)
T ss_pred             cccC-CHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhcCCeeccCCCHHHEEEccCCcEEEeecchhHHhcc
Confidence            9864 55443   322233358999999999999999999975         34899999999999999999986543

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=99.78  E-value=2.3e-18  Score=140.21  Aligned_cols=122  Identities=30%  Similarity=0.328  Sum_probs=106.4

Q ss_pred             eeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccCCCCH
Q 039406          107 LRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTL  170 (243)
Q Consensus       107 lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~g~L  170 (243)
                      ||.|+||.||++......+                ....+.+|+.++++++|+||+++++.+..++..|+||||+.+++|
T Consensus         1 lg~G~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L   80 (250)
T cd05123           1 LGKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFIVKLHYAFQTEEKLYLVLEYAPGGEL   80 (250)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEeehhhhcchHHHHHHHHHHHHHHHcCCCcHHHHHHHeecCCeeEEEEecCCCCcH
Confidence            6899999999998654221                234788899999999999999999999999999999999999999


Q ss_pred             HHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          171 VFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       171 ~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      .+++....  .+++..+..++.|++.+|.|||.        +++||+++.++.++|+|||++......
T Consensus        81 ~~~l~~~~--~l~~~~~~~~~~qi~~~l~~lh~~~~~H~~l~p~ni~~~~~~~~~l~d~~~~~~~~~~  146 (250)
T cd05123          81 FSHLSKEG--RFSEERARFYAAEIVLALEYLHSLGIIYRDLKPENILLDADGHIKLTDFGLAKELSSE  146 (250)
T ss_pred             HHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCceecCCCcceEEEcCCCcEEEeecCcceecccC
Confidence            99997654  48999999999999999999987        468999999999999999999876543

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=99.78  E-value=3.1e-18  Score=145.82  Aligned_cols=127  Identities=20%  Similarity=0.244  Sum_probs=105.5

Q ss_pred             CCCccceeeecCceEEEEEEecCC--ch---------------hHHHHHHHHHHHHhc-CCCccceEEEEEEeC----Ce
Q 039406          100 GFSDANLLRQDGFGYVHRGVLPNG--KE---------------GEREFQAEVEIISRV-HHKHLVSLVGYYTAG----SQ  157 (243)
Q Consensus       100 ~~~~~~~lg~G~~g~V~~~~~~~~--~~---------------~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~----~~  157 (243)
                      +|.+.+.||+|+||.||+++....  ..               ..+.+.+|+.+++++ +|+||+++++++...    ..
T Consensus         1 ~y~~~~~lg~G~~g~vy~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~~~   80 (332)
T cd07857           1 RYELIKELGQGAYGIVCSARNAETSEEETVAIKKITNVFSKKILAKRALRELKLLRHFRGHKNITCLYDMDIVFPGNFNE   80 (332)
T ss_pred             CceEEEEccccCCeEEEEEEeCCCCcCceEEEEEeccccccchhHHHHHHHHHHHHHhcCCCChheeeeeeeeccccCCc
Confidence            477889999999999999987654  21               235678899999999 599999999875432    45


Q ss_pred             eEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          158 RMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       158 ~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      +|++|||+. ++|.+++....  .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++.+..
T Consensus        81 ~~~~~e~~~-~~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~givH~dlkp~Nili~~~~~~kl~Dfg~a~~~~~  157 (332)
T cd07857          81 LYLYEELME-ADLHQIIRSGQ--PLTDAHFQSFIYQILCGLKYIHSANVLHRDLKPGNLLVNADCELKICDFGLARGFSE  157 (332)
T ss_pred             EEEEEeccc-CCHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHeEEcCCCCEEeCcCCCceeccc
Confidence            889999995 58988886543  48999999999999999999987        45899999999999999999987643

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=99.78  E-value=1.1e-18  Score=146.53  Aligned_cols=130  Identities=22%  Similarity=0.258  Sum_probs=107.6

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCch---------------hHHHHHHHHHHHHhcCCCccceEEEEEEeC-------
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGKE---------------GEREFQAEVEIISRVHHKHLVSLVGYYTAG-------  155 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~---------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~-------  155 (243)
                      .++|.+.+.||+|+||.||++....+..               ....+.+|+++|+.++|+||+++++++...       
T Consensus         7 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   86 (311)
T cd07866           7 LRDYEILGKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITALREIKILKKLKHPNVVPLIDMAVERPDKSKRK   86 (311)
T ss_pred             cccEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEEeccCCCCcchhHHHHHHHHHhcCCCCccchhhheeccccccccc
Confidence            4789999999999999999998765421               124567899999999999999999987543       


Q ss_pred             -CeeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCcee
Q 039406          156 -SQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKI  226 (243)
Q Consensus       156 -~~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~  226 (243)
                       ..+|+||||+.+ +|...+.... ..+++..++.++.|++.+|.|||.        +++|||++.++.+||+|||+++.
T Consensus        87 ~~~~~lv~~~~~~-~l~~~~~~~~-~~~~~~~~~~i~~~l~~al~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~  164 (311)
T cd07866          87 RGSVYMVTPYMDH-DLSGLLENPS-VKLTESQIKCYMLQLLEGINYLHENHILHRDIKAANILIDNQGILKIADFGLARP  164 (311)
T ss_pred             CceEEEEEecCCc-CHHHHHhccc-cCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEECcCccchh
Confidence             347999999965 6777665433 258999999999999999999987        45899999999999999999987


Q ss_pred             cCC
Q 039406          227 ASD  229 (243)
Q Consensus       227 ~~~  229 (243)
                      ...
T Consensus       165 ~~~  167 (311)
T cd07866         165 YDG  167 (311)
T ss_pred             ccC
Confidence            643

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=99.78  E-value=1e-18  Score=148.41  Aligned_cols=128  Identities=19%  Similarity=0.290  Sum_probs=110.1

Q ss_pred             CCCccceeeecCceEEEEEEecCCc---------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCC-----eeE
Q 039406          100 GFSDANLLRQDGFGYVHRGVLPNGK---------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGS-----QRM  159 (243)
Q Consensus       100 ~~~~~~~lg~G~~g~V~~~~~~~~~---------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-----~~~  159 (243)
                      +|.+.+.||.|+||.||+|+.....               ...+.+.+|+.+|+.++|+||+++++++...+     .+|
T Consensus         1 ~y~i~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~   80 (330)
T cd07834           1 RYELLKPIGSGAYGVVCSAVDKRTGRKVAIKKISNVFDDLIDAKRILREIKLLRHLRHENIIGLLDILRPPSPEDFNDVY   80 (330)
T ss_pred             CceeeeeecCCCCeEEEEEEeCCCCcEEEEEeeccccccchhhhhHHHHHHHHHhcCCcchhhhhhhhcccCcccccceE
Confidence            4788899999999999999865422               13457889999999999999999999988765     799


Q ss_pred             EEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          160 LVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       160 lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      +||||+. ++|.+++....  .+++..++.++.+++.||.|||.        +++|||++.++.+||+|||++......
T Consensus        81 lv~e~~~-~~l~~~l~~~~--~l~~~~~~~i~~~l~~~l~~LH~~gi~H~dlkp~nili~~~~~~~L~dfg~~~~~~~~  156 (330)
T cd07834          81 IVTELME-TDLHKVIKSPQ--PLTDDHIQYFLYQILRGLKYLHSANVIHRDLKPSNILVNSNCDLKICDFGLARGVDPD  156 (330)
T ss_pred             EEecchh-hhHHHHHhCCC--CCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEcccCceEeeccc
Confidence            9999997 48988886544  58999999999999999999987        458999999999999999999987554

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=99.78  E-value=4.1e-18  Score=143.60  Aligned_cols=128  Identities=27%  Similarity=0.334  Sum_probs=107.7

Q ss_pred             CCCccceeeecCceEEEEEEecCCc----------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEe
Q 039406          100 GFSDANLLRQDGFGYVHRGVLPNGK----------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYE  163 (243)
Q Consensus       100 ~~~~~~~lg~G~~g~V~~~~~~~~~----------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e  163 (243)
                      .|...+.||+|+||.||+++...+.                ...+.+.+|+++++.++|+|++++++++...+..|+|||
T Consensus        16 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   95 (308)
T cd06634          16 LFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVME   95 (308)
T ss_pred             HHHHHHheeeCCCEEEEEEEEcCCCcEEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCcccEEEEEEcCCeeEEEEE
Confidence            4667789999999999999865432                123467789999999999999999999999999999999


Q ss_pred             ccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          164 FVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       164 ~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      |+. |+|.+++..... .+++..++.++.+++.+|.|||.        +++|||++.++.+||+|||++.....
T Consensus        96 ~~~-~~l~~~~~~~~~-~l~~~~~~~~~~~l~~~l~~LH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~  167 (308)
T cd06634          96 YCL-GSASDLLEVHKK-PLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAP  167 (308)
T ss_pred             ccC-CCHHHHHHHcCC-CCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHhEEECCCCcEEECCcccceeecC
Confidence            996 578777654333 48899999999999999999987        45899999999999999999987643

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=99.77  E-value=1.9e-18  Score=143.23  Aligned_cols=128  Identities=19%  Similarity=0.285  Sum_probs=109.7

Q ss_pred             CCccceeeecCceEEEEEEecCCch---------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEecc
Q 039406          101 FSDANLLRQDGFGYVHRGVLPNGKE---------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFV  165 (243)
Q Consensus       101 ~~~~~~lg~G~~g~V~~~~~~~~~~---------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~  165 (243)
                      |...+.||.|++|.||++....+.+               ....+.+|+.+|++++|+||+++++++..++..++||||+
T Consensus         1 y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~   80 (283)
T cd05118           1 YQKLGKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLKELNHPNIIKLLDVFRHKGDLYLVFEFM   80 (283)
T ss_pred             CccceeeecCCCceEEEEEcCCCCcEEEEEEeccccccchhHHHHHHHHHHHHHhcCCCcchHHHhhccCCCEEEEEecc
Confidence            5677899999999999998654321               2456788999999999999999999999999999999999


Q ss_pred             CCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          166 LNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       166 ~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      .+ +|.+++.... ..+++..++.++.+++.+|.|||.        +++||+++.++.+||+|||++......
T Consensus        81 ~~-~l~~~l~~~~-~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~p~nili~~~~~~~l~df~~~~~~~~~  151 (283)
T cd05118          81 DT-DLYKLIKDRQ-RGLPESLIKSYLYQLLQGLAFCHSHGILHRDLKPENLLINTEGVLKLADFGLARSFGSP  151 (283)
T ss_pred             CC-CHHHHHHhhc-ccCCHHHHHHHHHHHHHHHHHHHHCCeeecCcCHHHEEECCCCcEEEeeeeeeEecCCC
Confidence            75 8888776543 358999999999999999999987        458999999999999999999877554

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=99.77  E-value=6e-19  Score=139.04  Aligned_cols=131  Identities=21%  Similarity=0.226  Sum_probs=111.4

Q ss_pred             HhCCCCccceeeecCceEEEEEEecCC-------------chhHHHHHHHHHHHHhcCCCccceEEEEEEeC-----Cee
Q 039406           97 ATDGFSDANLLRQDGFGYVHRGVLPNG-------------KEGEREFQAEVEIISRVHHKHLVSLVGYYTAG-----SQR  158 (243)
Q Consensus        97 ~~~~~~~~~~lg~G~~g~V~~~~~~~~-------------~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~-----~~~  158 (243)
                      ..++|.+.+.||+|+|+.||.+....+             .+..+..++|++..++++||||++++++...+     ...
T Consensus        19 n~~Ryri~~~LgeGGfsfv~LV~~~s~~~~YAlKkI~c~~~~~~e~~~rEid~~rkf~s~~vl~l~dh~l~~~~D~~~~~   98 (302)
T KOG2345|consen   19 NNKRYRIQRLLGEGGFSFVDLVKGLSTGHLYALKKILCHSQEDIEEALREIDNHRKFNSPNVLRLVDHQLREEKDGKHEA   98 (302)
T ss_pred             cCceEEEeeeecCCCceeeeeecccCcccchhhheeeccchHHHHHHHHHHHHHHhhCCcchHHHHHHHHHhhccCceeE
Confidence            346899999999999999999973322             34677889999999999999999998876533     359


Q ss_pred             EEEEeccCCCCHHHHhccCC--CCCCCHHHHHHHHHHHHHhhhHhhc----------CCCcEEECCCCcEEEeccCCcee
Q 039406          159 MLVYEFVLNNTLVFHLHGKG--QPTMDWPTRIKIALGSAKGLAYLHD----------DLANILLDFKFEAKVADFGLAKI  226 (243)
Q Consensus       159 ~lv~e~~~~g~L~~~l~~~~--~~~l~~~~~~~i~~~i~~~l~~lH~----------~~~NiLl~~~~~~kl~DFG~a~~  226 (243)
                      ||++.|...|+|.+.+....  +..+++.+++.|+.+++.||++||.          ||+|||+.+.+.++|.|||.+..
T Consensus        99 yll~Pyy~~Gsl~d~i~~~k~kg~~~sE~~iL~if~gic~gL~~lH~~~~~yAH~DiKP~NILls~~~~~vl~D~GS~~~  178 (302)
T KOG2345|consen   99 YLLLPYYKRGSLLDEIERLKIKGNFVSEAQILWIFLGICRGLEALHEKEPPYAHRDIKPANILLSDSGLPVLMDLGSATQ  178 (302)
T ss_pred             EEEeehhccccHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHhccCCcccccCCCcceeEecCCCceEEEeccCccc
Confidence            99999999999999886532  3358999999999999999999986          56999999999999999999886


Q ss_pred             c
Q 039406          227 A  227 (243)
Q Consensus       227 ~  227 (243)
                      .
T Consensus       179 a  179 (302)
T KOG2345|consen  179 A  179 (302)
T ss_pred             c
Confidence            5

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=99.77  E-value=2.6e-18  Score=146.07  Aligned_cols=122  Identities=17%  Similarity=0.136  Sum_probs=103.7

Q ss_pred             ceeeec--CceEEEEEEecCCc---------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccCC
Q 039406          105 NLLRQD--GFGYVHRGVLPNGK---------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLN  167 (243)
Q Consensus       105 ~~lg~G--~~g~V~~~~~~~~~---------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~  167 (243)
                      ..||+|  +||.||++.+....               +..+.+.+|+.+++.++|+||++++++|..++..|+||||+.+
T Consensus         4 ~~ig~g~~~~~~v~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~~~~~~v~e~~~~   83 (328)
T cd08226           4 VEIGRGFCNLTSVYLARHTPTGTLVTVRITDLENCTEEHLKALQNEVVLSHFFRHPNIMTSWTVFTTGSWLWVISPFMAY   83 (328)
T ss_pred             HHhCCcccCceeEEEEEEcCCCcEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceEeeeEecCCceEEEEecccC
Confidence            356666  89999999764332               1346788999999999999999999999999999999999999


Q ss_pred             CCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCcee
Q 039406          168 NTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKI  226 (243)
Q Consensus       168 g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~  226 (243)
                      ++|.+++.......+++..++.++.|++.||.|||.        |++|||++.++.+||+||+.+..
T Consensus        84 ~~l~~~l~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~ivHrDlkp~Nill~~~~~~~~~~~~~~~~  150 (328)
T cd08226          84 GSANSLLKTYFPEGMSEALIGNILFGALRGLNYLHQNGYIHRNIKASHILISGDGLVSLSGLSHLYS  150 (328)
T ss_pred             CCHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEeCCCcEEEechHHHhh
Confidence            999999876544458899999999999999999987        56899999999999999986543

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=99.77  E-value=3e-19  Score=160.28  Aligned_cols=131  Identities=24%  Similarity=0.361  Sum_probs=112.6

Q ss_pred             CCccceeeecCceEEEEEEecCCc------------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEE
Q 039406          101 FSDANLLRQDGFGYVHRGVLPNGK------------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVY  162 (243)
Q Consensus       101 ~~~~~~lg~G~~g~V~~~~~~~~~------------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  162 (243)
                      +...++||.|+||+||+|.+-...                  +..+.+++|+-+|.+|+|+|+++|++++.... +-||+
T Consensus       698 lkk~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~t~~~~s~e~LdeAl~masldHpnl~RLLgvc~~s~-~qlvt  776 (1177)
T KOG1025|consen  698 LKKDKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEFTSPKASIELLDEALRMASLDHPNLLRLLGVCMLST-LQLVT  776 (1177)
T ss_pred             hhhhceeccccceeEEeeeEecCCceecceeEEEEeeccCCchhhHHHHHHHHHHhcCCCchHHHHhhhcccch-HHHHH
Confidence            345679999999999999754332                  24678899999999999999999999998765 88999


Q ss_pred             eccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHh------hcCC--CcEEECCCCcEEEeccCCceecCCCCce
Q 039406          163 EFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL------HDDL--ANILLDFKFEAKVADFGLAKIASDVNTH  233 (243)
Q Consensus       163 e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~l------H~~~--~NiLl~~~~~~kl~DFG~a~~~~~~~~~  233 (243)
                      +||+.|.|.++++.++. .+.....+.|..||++||.||      |+++  -|||+..-..+||.|||+|+.+..+...
T Consensus       777 q~mP~G~LlDyvr~hr~-~igsq~lLnw~~QIAkgM~YLe~qrlVHrdLaaRNVLVksP~hvkitdfgla~ll~~d~~e  854 (1177)
T KOG1025|consen  777 QLMPLGCLLDYVREHRD-NIGSQDLLNWCYQIAKGMKYLEEQRLVHRDLAARNVLVKSPNHVKITDFGLAKLLAPDEKE  854 (1177)
T ss_pred             HhcccchHHHHHHHhhc-cccHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhheeecCCCeEEEEecchhhccCccccc
Confidence            99999999999987665 488889999999999999999      5677  5999999999999999999998765543

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.77  E-value=8.6e-20  Score=145.94  Aligned_cols=130  Identities=18%  Similarity=0.278  Sum_probs=107.6

Q ss_pred             CCccceeeecCceEEEEEEecCCch---------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCC-----eeEE
Q 039406          101 FSDANLLRQDGFGYVHRGVLPNGKE---------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGS-----QRML  160 (243)
Q Consensus       101 ~~~~~~lg~G~~g~V~~~~~~~~~~---------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-----~~~l  160 (243)
                      .+--+-||-|+||+||.+.+..+.+               ..+++.+|+++|..++|.|++..+++..-.+     .+|+
T Consensus        55 i~PDRPIGYGAFGVVWsVTDPRdgrrvalkK~pnvfq~L~s~krvFre~kmLcfFkHdNVLSaLDILQPph~dfFqEiYV  134 (449)
T KOG0664|consen   55 IQPDRPIGYGAFGVVWSVTDPRSGKRVALKKMPNVFQNLASCKRVFREIKMLSSFRHDNVLSLLDILQPANPSFFQELYV  134 (449)
T ss_pred             CCCCCcccccceeEEEeccCCCCccchhHhhcchHHHHHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCCchHHHHHHH
Confidence            3445789999999999887665532               3577889999999999999999998876443     4889


Q ss_pred             EEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCc
Q 039406          161 VYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNT  232 (243)
Q Consensus       161 v~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~  232 (243)
                      +.|+|.. +|.++|..-.  .++...++.++.||+.||+|||.        ||.|+|++.+..+||||||+|+....+..
T Consensus       135 ~TELmQS-DLHKIIVSPQ--~Ls~DHvKVFlYQILRGLKYLHsA~ILHRDIKPGNLLVNSNCvLKICDFGLARvee~d~~  211 (449)
T KOG0664|consen  135 LTELMQS-DLHKIIVSPQ--ALTPDHVKVFVYQILRGLKYLHTANILHRDIKPGNLLVNSNCILKICDFGLARTWDQRDR  211 (449)
T ss_pred             HHHHHHh-hhhheeccCC--CCCcchhhhhHHHHHhhhHHHhhcchhhccCCCccEEeccCceEEecccccccccchhhh
Confidence            9999965 9998886433  58888999999999999999976        67899999999999999999998765544


Q ss_pred             e
Q 039406          233 H  233 (243)
Q Consensus       233 ~  233 (243)
                      .
T Consensus       212 ~  212 (449)
T KOG0664|consen  212 L  212 (449)
T ss_pred             h
Confidence            3

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.77  E-value=2.8e-18  Score=156.80  Aligned_cols=134  Identities=24%  Similarity=0.410  Sum_probs=112.9

Q ss_pred             hCCCCccceeeecCceEEEEEEecCC---------------------chhHHHHHHHHHHHHhc-CCCccceEEEEEEeC
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNG---------------------KEGEREFQAEVEIISRV-HHKHLVSLVGYYTAG  155 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~---------------------~~~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~  155 (243)
                      .+++.+.+.||+|.||.|++|.....                     ....+.+..|+++|+.+ +|+||+.+++++...
T Consensus       295 ~~~l~~~~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~~~~~~~~~El~~m~~~g~H~niv~llG~~t~~  374 (609)
T KOG0200|consen  295 RENLKLGKYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENASSSEKKDLMSELNVLKELGKHPNIVNLLGACTQD  374 (609)
T ss_pred             hhhccccceeecccccceEeEEEeecccccccceEEEEEEecccccCcHHHHHHHHHHHHHHHhcCCcchhhheeeeccC
Confidence            34455667999999999999964321                     12467889999999999 699999999999999


Q ss_pred             CeeEEEEeccCCCCHHHHhccCC------------C--CCCCHHHHHHHHHHHHHhhhHh------hcCC--CcEEECCC
Q 039406          156 SQRMLVYEFVLNNTLVFHLHGKG------------Q--PTMDWPTRIKIALGSAKGLAYL------HDDL--ANILLDFK  213 (243)
Q Consensus       156 ~~~~lv~e~~~~g~L~~~l~~~~------------~--~~l~~~~~~~i~~~i~~~l~~l------H~~~--~NiLl~~~  213 (243)
                      +.+++|+|||..|+|.+++...+            .  ..+.....+.++.||+.|++||      |||+  -|||+..+
T Consensus       375 ~~~~~v~Ey~~~G~L~~~Lr~~r~~~~~~~~~~~~~~~~~L~~~dLlsfa~QIa~GMe~L~~~~~vHRDLAaRNVLi~~~  454 (609)
T KOG0200|consen  375 GPLYVIVEYAEHGDLLEFLRKKRVTESIDGSGVFPNERDALTTKDLLSFAYQIANGMEYLASVPCVHRDLAARNVLITKN  454 (609)
T ss_pred             CceEEEEEeccCCcHHHHHHhccccccccccCCCccccCCcCHHHHHHHHHHHHHHHHHHhhCCccchhhhhhhEEecCC
Confidence            99999999999999999998665            0  1378889999999999999998      7777  49999999


Q ss_pred             CcEEEeccCCceecCCCC
Q 039406          214 FEAKVADFGLAKIASDVN  231 (243)
Q Consensus       214 ~~~kl~DFG~a~~~~~~~  231 (243)
                      ..+||+|||+|+......
T Consensus       455 ~~~kIaDFGlar~~~~~~  472 (609)
T KOG0200|consen  455 KVIKIADFGLARDHYNKD  472 (609)
T ss_pred             CEEEEccccceeccCCCC
Confidence            999999999999654433

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=99.77  E-value=7.2e-18  Score=140.06  Aligned_cols=136  Identities=20%  Similarity=0.267  Sum_probs=114.0

Q ss_pred             HHhCCCCccceeeecCceEEEEEEecCCch------------hHHHHHHHHHHHHhcC-CC-----ccceEEEEEEeCCe
Q 039406           96 RATDGFSDANLLRQDGFGYVHRGVLPNGKE------------GEREFQAEVEIISRVH-HK-----HLVSLVGYYTAGSQ  157 (243)
Q Consensus        96 ~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~------------~~~~~~~E~~~l~~l~-hp-----~iv~~~~~~~~~~~  157 (243)
                      ...++|.+.+.+|+|+||.|..|.+...+.            ..+..+-|+++|.+|+ +.     -+|++.+||...++
T Consensus        86 ~l~~Ry~i~~~lGeGtFGkV~ec~D~~~~~~vAlKIik~V~kYreAa~iEi~vLqki~~~DP~g~~rcv~m~~wFdyrgh  165 (415)
T KOG0671|consen   86 ILTNRYEIVDLLGEGTFGKVVECWDRETKEHVALKIIKNVDKYREAALIEIEVLQKINESDPNGKFRCVQMRDWFDYRGH  165 (415)
T ss_pred             ccccceehhhhhcCCcccceEEEeecCCCceehHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCCceEEEeeehhhhccCc
Confidence            346889999999999999999999877632            3455567999999994 22     36778889999999


Q ss_pred             eEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECC-----------------
Q 039406          158 RMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDF-----------------  212 (243)
Q Consensus       158 ~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~-----------------  212 (243)
                      +|||+|.+ |-++.+++..+....++...++.++.|+++++.|||.        ||+|||+.+                 
T Consensus       166 iCivfell-G~S~~dFlk~N~y~~fpi~~ir~m~~QL~~sv~fLh~~kl~HTDLKPENILfvss~~~~~~~~k~~~~~~r  244 (415)
T KOG0671|consen  166 ICIVFELL-GLSTFDFLKENNYIPFPIDHIRHMGYQLLESVAFLHDLKLTHTDLKPENILFVSSEYFKTYNPKKKVCFIR  244 (415)
T ss_pred             eEEEEecc-ChhHHHHhccCCccccchHHHHHHHHHHHHHHHHHHhcceeecCCChheEEEeccceEEEeccCCccceec
Confidence            99999998 6699999998887789999999999999999999997        789999821                 


Q ss_pred             ---CCcEEEeccCCceecCCCCc
Q 039406          213 ---KFEAKVADFGLAKIASDVNT  232 (243)
Q Consensus       213 ---~~~~kl~DFG~a~~~~~~~~  232 (243)
                         +..|||+|||.|+.-.+...
T Consensus       245 ~~ks~~I~vIDFGsAtf~~e~hs  267 (415)
T KOG0671|consen  245 PLKSTAIKVIDFGSATFDHEHHS  267 (415)
T ss_pred             cCCCcceEEEecCCcceeccCcc
Confidence               23589999999998766553

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=99.76  E-value=6.3e-18  Score=144.61  Aligned_cols=126  Identities=18%  Similarity=0.313  Sum_probs=104.9

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCch---------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCC------
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGKE---------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGS------  156 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~---------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~------  156 (243)
                      .++|...+.||+|+||.||+|+...+.+               ....+.+|+.+++.++|+||+++++++....      
T Consensus        14 ~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~   93 (342)
T cd07879          14 PERYTSLKQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQSEIFAKRAYRELTLLKHMQHENVIGLLDVFTSAVSGDEFQ   93 (342)
T ss_pred             ccceEEEEEeeecCCeEEEEEEeCCCCcEEEEEEecCccccccchhHHHHHHHHHHhcCCCCccchhheecccccCCCCc
Confidence            4789999999999999999998654321               2345788999999999999999999987543      


Q ss_pred             eeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          157 QRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       157 ~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      .+|+||||+.. +|..++..    .+++..+..++.|++.||.|||.        +++|||++.++.+||+|||+++...
T Consensus        94 ~~~lv~e~~~~-~l~~~~~~----~~~~~~~~~~~~qi~~aL~~LH~~~i~H~dlkp~NIll~~~~~~kL~dfg~~~~~~  168 (342)
T cd07879          94 DFYLVMPYMQT-DLQKIMGH----PLSEDKVQYLVYQMLCGLKYIHSAGIIHRDLKPGNLAVNEDCELKILDFGLARHAD  168 (342)
T ss_pred             eEEEEeccccc-CHHHHHcC----CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEeeCCCCcCCC
Confidence            46999999964 77766521    48889999999999999999977        4589999999999999999998653

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=99.76  E-value=5.7e-18  Score=141.82  Aligned_cols=129  Identities=19%  Similarity=0.283  Sum_probs=106.5

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc--------------hhHHHHHHHHHHHHhc-CCCccceEEEEEEeCCeeEEEEe
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK--------------EGEREFQAEVEIISRV-HHKHLVSLVGYYTAGSQRMLVYE  163 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~--------------~~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~~~lv~e  163 (243)
                      ++|.+.+.||+|+||.||++.+..+.              .....+.+|+.++.++ .|+||+++++++.+....|+|||
T Consensus        15 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e   94 (296)
T cd06618          15 NDLENLGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVKCYGYFITDSDVFICME   94 (296)
T ss_pred             chheeeeEeeccCCeEEEEEEECCCCeEEEEEEEeccCChHHHHHHHHHHHHHHhccCCCchHhhheeeecCCeEEEEee
Confidence            67889999999999999999876422              1234566778777776 49999999999999999999999


Q ss_pred             ccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc---------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          164 FVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD---------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       164 ~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~---------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      |+. ++|.+++..... .+++..+..++.+++.+|.|||.         +++|||++.++.+||+|||++..+..
T Consensus        95 ~~~-~~l~~l~~~~~~-~l~~~~~~~i~~~i~~~l~~lH~~~~i~H~dl~p~nill~~~~~~kL~dfg~~~~~~~  167 (296)
T cd06618          95 LMS-TCLDKLLKRIQG-PIPEDILGKMTVAIVKALHYLKEKHGVIHRDVKPSNILLDASGNVKLCDFGISGRLVD  167 (296)
T ss_pred             ccC-cCHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHhhCCEecCCCcHHHEEEcCCCCEEECccccchhccC
Confidence            995 477776654333 58999999999999999999985         24799999999999999999987643

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=99.76  E-value=1.9e-18  Score=147.94  Aligned_cols=129  Identities=19%  Similarity=0.330  Sum_probs=109.6

Q ss_pred             HhCCCCccceeeecCceEEEEEEecCCch---------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCe----
Q 039406           97 ATDGFSDANLLRQDGFGYVHRGVLPNGKE---------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQ----  157 (243)
Q Consensus        97 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~---------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~----  157 (243)
                      ..++|...+.||+|+||.||+|+...+..               ..+.+.+|+.++++++|+||+++++++...+.    
T Consensus        13 ~~~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   92 (343)
T cd07851          13 VPDRYQNLSPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPFQSAIHAKRTYRELRLLKHMDHENVIGLLDVFTPASSLEDF   92 (343)
T ss_pred             ccCceEEEEEeccCCceEEEEEEECCCCcEEEEEecccccchhhHHHHHHHHHHHHHhccCCCHHHHHHHhhcccccccc
Confidence            45789999999999999999998754321               23556789999999999999999988776554    


Q ss_pred             --eEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceec
Q 039406          158 --RMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIA  227 (243)
Q Consensus       158 --~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~  227 (243)
                        .|+|+||+ +++|.+++...   .+++..++.++.|++.+|.|||.        +++|||++.++.+||+|||++...
T Consensus        93 ~~~~lv~e~~-~~~L~~~~~~~---~l~~~~~~~~~~ql~~aL~~LH~~gi~H~dlkp~Nill~~~~~~kL~dfg~~~~~  168 (343)
T cd07851          93 QDVYLVTHLM-GADLNNIVKCQ---KLSDDHIQFLVYQILRGLKYIHSAGIIHRDLKPSNIAVNEDCELKILDFGLARHT  168 (343)
T ss_pred             ccEEEEEecC-CCCHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCCEEEccccccccc
Confidence              89999999 66999988642   48999999999999999999987        458999999999999999999876


Q ss_pred             CC
Q 039406          228 SD  229 (243)
Q Consensus       228 ~~  229 (243)
                      ..
T Consensus       169 ~~  170 (343)
T cd07851         169 DD  170 (343)
T ss_pred             cc
Confidence            43

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=99.76  E-value=3.8e-18  Score=141.33  Aligned_cols=127  Identities=22%  Similarity=0.265  Sum_probs=109.4

Q ss_pred             CCccceeeecCceEEEEEEecCCc---------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEecc
Q 039406          101 FSDANLLRQDGFGYVHRGVLPNGK---------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFV  165 (243)
Q Consensus       101 ~~~~~~lg~G~~g~V~~~~~~~~~---------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~  165 (243)
                      |...+.||+|.||.||+|+...+.               ...+.+.+|+.++++++|+||+++++++.+.+..++||||+
T Consensus         1 y~~~~~ig~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~~   80 (282)
T cd07829           1 YEKLEKLGEGTYGVVYKARDKKTGEIVALKKIRLDNEEEGIPSTALREISLLKELKHPNIVKLLDVIHTERKLYLVFEYC   80 (282)
T ss_pred             CeeehcccccCcceEEEeeecCCCcEEEEEEeccccccccccHHHHHHHHHHHhcCCCCHHHHHhhhhcCCceEEEecCc
Confidence            566788999999999999876532               12356778999999999999999999999999999999999


Q ss_pred             CCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          166 LNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       166 ~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      . ++|.+++.... ..+++..++.++.+++.+|.|||.        +++||++++++.+||+|||+++....
T Consensus        81 ~-~~l~~~i~~~~-~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~~l~~~ni~~~~~~~~~l~d~g~~~~~~~  150 (282)
T cd07829          81 D-MDLKKYLDKRP-GPLSPNLIKSIMYQLLRGLAYCHSHRILHRDLKPQNILINRDGVLKLADFGLARAFGI  150 (282)
T ss_pred             C-cCHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCChheEEEcCCCCEEEecCCcccccCC
Confidence            7 58999997653 248999999999999999999987        45899999999999999999987644

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=99.76  E-value=6e-18  Score=142.67  Aligned_cols=126  Identities=13%  Similarity=0.078  Sum_probs=103.5

Q ss_pred             ccceeeecCceEEEEEEecC-------------CchhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccCCCC
Q 039406          103 DANLLRQDGFGYVHRGVLPN-------------GKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNT  169 (243)
Q Consensus       103 ~~~~lg~G~~g~V~~~~~~~-------------~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~g~  169 (243)
                      +.+.+|.|+++.||++....             ..+..+.+.+|+.+|+.++|+||+++++++...+..|++|||+.+++
T Consensus         6 i~~~~~~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~e~~~~~~   85 (314)
T cd08216           6 IGKCFEDLMIVHLAKHKPTNTLVAVKKINLDSCSKEDLKLLQQEIITSRQLQHPNILPYVTSFIVDSELYVVSPLMAYGS   85 (314)
T ss_pred             hhHhhcCCceEEEEEecCCCCEEEEEEEeccccchhHHHHHHHHHHHHHhcCCcchhhhhheeecCCeEEEEEeccCCCC
Confidence            34455556666666554311             12345678999999999999999999999999999999999999999


Q ss_pred             HHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          170 LVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       170 L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      |.+++.......+++..++.++.|++.||.|||.        +++|||++.++.+||+|||.+..+.
T Consensus        86 l~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~LH~~~ivH~dlk~~Nili~~~~~~kl~d~~~~~~~~  152 (314)
T cd08216          86 CEDLLKTHFPEGLPELAIAFILKDVLNALDYIHSKGFIHRSVKASHILLSGDGKVVLSGLRYSVSMI  152 (314)
T ss_pred             HHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCcceEEEecCCceEEecCccceeec
Confidence            9999976544458899999999999999999987        4689999999999999999987653

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>PHA02882 putative serine/threonine kinase; Provisional

Probab=99.76  E-value=1.3e-17  Score=139.82  Aligned_cols=128  Identities=16%  Similarity=0.156  Sum_probs=96.5

Q ss_pred             CCCCccceeeecCceEEEEEEecCC---ch-------------h-----------HHHHHHHHHHHHhcCCCccceEEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNG---KE-------------G-----------EREFQAEVEIISRVHHKHLVSLVGY  151 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~---~~-------------~-----------~~~~~~E~~~l~~l~hp~iv~~~~~  151 (243)
                      ++|.+.++||+|+||.||+|....+   ..             .           ......++..+..++|+||++++++
T Consensus        12 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~   91 (294)
T PHA02882         12 KEWKIDKLIGCGGFGCVYETQCASDHCINNQAVAKIENLENETIVMETLVYNNIYDIDKIALWKNIHNIDHLGIPKYYGC   91 (294)
T ss_pred             CceEEeeEEecCCCceEEEEEEcCCcccccceEEEeccccCCchhhHHHHHHhhhhHHHHHHHHHhccCCCCCCCcEEEe
Confidence            6799999999999999999986654   11             0           0011223344556789999999987


Q ss_pred             EEeCC----eeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEe
Q 039406          152 YTAGS----QRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVA  219 (243)
Q Consensus       152 ~~~~~----~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~  219 (243)
                      +....    ..+++||++. .++.+.+....  ..++..++.++.|++.||.|||.        ||+|||++.++.+||+
T Consensus        92 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~i~~qi~~~l~~lH~~~iiHrDiKp~Nill~~~~~~~l~  168 (294)
T PHA02882         92 GSFKRCRMYYRFILLEKLV-ENTKEIFKRIK--CKNKKLIKNIMKDMLTTLEYIHEHGISHGDIKPENIMVDGNNRGYII  168 (294)
T ss_pred             eeEecCCceEEEEEEehhc-cCHHHHHHhhc--cCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCcEEEE
Confidence            66443    4578888874 36766665432  25778889999999999999976        4689999999999999


Q ss_pred             ccCCceecCC
Q 039406          220 DFGLAKIASD  229 (243)
Q Consensus       220 DFG~a~~~~~  229 (243)
                      |||+|+.+..
T Consensus       169 DFGla~~~~~  178 (294)
T PHA02882        169 DYGIASHFII  178 (294)
T ss_pred             EcCCceeecc
Confidence            9999987743

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=99.76  E-value=7e-18  Score=150.04  Aligned_cols=132  Identities=23%  Similarity=0.350  Sum_probs=98.8

Q ss_pred             HhCCCCccceeeecCceEEEEEEecCC-----------------c------------hhHHHH--------------HHH
Q 039406           97 ATDGFSDANLLRQDGFGYVHRGVLPNG-----------------K------------EGEREF--------------QAE  133 (243)
Q Consensus        97 ~~~~~~~~~~lg~G~~g~V~~~~~~~~-----------------~------------~~~~~~--------------~~E  133 (243)
                      ..++|.+.++||+|+||.||+|.+...                 .            ...+.|              ..|
T Consensus       143 ~~d~F~i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~~~~~~~~fl~e~~~~~~~~e~~~vE  222 (507)
T PLN03224        143 SSDDFQLRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMDRQGVRQDFLKTGTLAKGSAETGMVE  222 (507)
T ss_pred             cccCceEeeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecccchhhHHHHHhhhhhhhcccchhHHH
Confidence            357899999999999999999864110                 0            011222              346


Q ss_pred             HHHHHhcCCCcc-----ceEEEEEEe--------CCeeEEEEeccCCCCHHHHhccCCC---------------------
Q 039406          134 VEIISRVHHKHL-----VSLVGYYTA--------GSQRMLVYEFVLNNTLVFHLHGKGQ---------------------  179 (243)
Q Consensus       134 ~~~l~~l~hp~i-----v~~~~~~~~--------~~~~~lv~e~~~~g~L~~~l~~~~~---------------------  179 (243)
                      +.++.+++|.++     ++++++|..        .+..||||||+.+++|.++++....                     
T Consensus       223 ~~~l~~l~~~~l~~~~~~~~lg~~~~~~~~g~~~~~~~~LV~Ey~~~gsL~~~L~~~~~~~~~~L~e~l~~g~~l~~~~~  302 (507)
T PLN03224        223 AYMCAKIKRNPIAAASCAEYLGYFTSNTADGAFTKGSQWLVWKFESDATLGDALDGKLGPFPGCLEEFMMAGKKIPDNMP  302 (507)
T ss_pred             HHHHHHhhcccchhhhhhhhhhhcccccccccccCCceEEEEEcCCCCcHHHHHhhccCCCcchHHHHHhcCCchhhhcc
Confidence            667777766544     667776643        3568999999999999998864211                     


Q ss_pred             -CCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          180 -PTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       180 -~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                       ..+++..++.++.+++.+|.|||.        +++|||++.++.+||+|||+++.+.
T Consensus       303 ~~~~~~~~~~~i~~ql~~aL~~lH~~~ivHrDLKp~NILl~~~~~~kL~DFGla~~~~  360 (507)
T PLN03224        303 QDKRDINVIKGVMRQVLTGLRKLHRIGIVHRDIKPENLLVTVDGQVKIIDFGAAVDMC  360 (507)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHCCeecCCCchHhEEECCCCcEEEEeCcCccccc
Confidence             124567788899999999999976        4689999999999999999997654

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=99.76  E-value=1e-19  Score=144.77  Aligned_cols=129  Identities=19%  Similarity=0.267  Sum_probs=101.4

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc--------------hhHHHHHHHHHHHHhc-CCCccceEEEEEEeCCeeEEEEe
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK--------------EGEREFQAEVEIISRV-HHKHLVSLVGYYTAGSQRMLVYE  163 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~--------------~~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~~~lv~e  163 (243)
                      ++.+.+..||.|+||.|++..++...              +..++++.|.+..++- ++||||++||.+..++..||.||
T Consensus        64 ~~Lqdlg~iG~G~fG~V~KM~hk~sg~~mAVKrIr~~n~~keq~rll~e~d~~mks~~cp~IVkfyGa~F~EGdcWiCME  143 (361)
T KOG1006|consen   64 DNLQDLGEIGNGAFGTVNKMLHKPSGKLMAVKRIRSNNIEKEQKRLLMEHDTVMKSSNCPNIVKFYGALFSEGDCWICME  143 (361)
T ss_pred             chHHHHHHhcCCcchhhhhhhcCccCcEEEEEEeeeccchHHHHHHHHHHHHHHhhcCCcHHHHHhhhhhcCCceeeeHH
Confidence            34455678999999999998766543              3567788888765554 79999999999999999999999


Q ss_pred             ccCCCCHHHHhc---cCCCCCCCHHHHHHHHHHHHHhhhHh-------hc--CCCcEEECCCCcEEEeccCCceecC
Q 039406          164 FVLNNTLVFHLH---GKGQPTMDWPTRIKIALGSAKGLAYL-------HD--DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       164 ~~~~g~L~~~l~---~~~~~~l~~~~~~~i~~~i~~~l~~l-------H~--~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      +|+ .+|..+..   ...+..+++.-.-.|....+.||.||       ||  ||+|||+|..|.+||||||++-.+.
T Consensus       144 LMd-~SlDklYk~vy~vq~~~ipE~Ilg~ItvatV~AL~yLK~~lkiIHRDvKPSNILldr~G~vKLCDFGIcGqLv  219 (361)
T KOG1006|consen  144 LMD-ISLDKLYKRVYSVQKSRIPENILGHITVATVDALDYLKEELKIIHRDVKPSNILLDRHGDVKLCDFGICGQLV  219 (361)
T ss_pred             HHh-hhHHHHHHHHHHHHhccCcHhhhhheeeeehhHHHHHHHHhhhhhccCChhheEEecCCCEeeecccchHhHH
Confidence            994 47665432   22233477777777888888888887       77  5799999999999999999987664

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=99.75  E-value=1.8e-18  Score=160.67  Aligned_cols=131  Identities=24%  Similarity=0.319  Sum_probs=106.8

Q ss_pred             HHHhCCCCccceeeecCceEEEEEEecCCc--------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeC-----
Q 039406           95 ARATDGFSDANLLRQDGFGYVHRGVLPNGK--------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAG-----  155 (243)
Q Consensus        95 ~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~--------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~-----  155 (243)
                      -+...+|+.++.||+|+||.||+++.+-+.              ....++.+|+++|.+|+|||||++|..|.+.     
T Consensus       475 SRY~~DFEEL~lLGkGGFG~VvkVRNKlDGr~YAIKKIpl~~s~~~~skI~rEVk~LArLnHpNVVRYysAWVEs~~~~~  554 (1351)
T KOG1035|consen  475 SRYLNDFEELELLGKGGFGSVVKVRNKLDGREYAIKKIPLKASDKLYSKILREVKLLARLNHPNVVRYYSAWVESTAELT  554 (1351)
T ss_pred             hhHhhhhHHHHHhcCCCCceEEEEeecccchhhhhhhccCchHHHHHHHHHHHHHHHhhcCCcceeeeehhhhccCCccc
Confidence            355688999999999999999999865442              2445678999999999999999998766320     


Q ss_pred             --------------------------------------------------------------------------------
Q 039406          156 --------------------------------------------------------------------------------  155 (243)
Q Consensus       156 --------------------------------------------------------------------------------  155 (243)
                                                                                                      
T Consensus       555 ~~ei~~~~~~~~sQs~s~~~~~~~~~q~t~~p~~~~~~~~~~~~dd~sss~~~~~~~~~~~~d~e~~d~dedg~~~S~tS  634 (1351)
T KOG1035|consen  555 VLEIVASDSESRSQSASKYNGVDIRYQPTSSPSLTLSELDSEDEDDKSSSYTTRKASYESSTDEENDDSDEDGRNLSNTS  634 (1351)
T ss_pred             cccccccchhhhcccCCCcccceeeeccCCCcccCcchhhccccCccccccccccccccccCCccccccccccccccccc
Confidence                                                                                            


Q ss_pred             ----------------------------------CeeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHh
Q 039406          156 ----------------------------------SQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL  201 (243)
Q Consensus       156 ----------------------------------~~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~l  201 (243)
                                                        -.+||=||||+...|.+++..+... -.....+.++.+|+.||.|+
T Consensus       635 ~~e~~~~~d~~~ess~s~~~~~n~~e~~~~~q~~~~LYIQMEyCE~~ll~~iI~~N~~~-~~~d~~wrLFreIlEGLaYI  713 (1351)
T KOG1035|consen  635 DSEGSVILDDTSESSESIPKTENSSEPMVPVQKPLILYIQMEYCEKTLLRDIIRRNHFN-SQRDEAWRLFREILEGLAYI  713 (1351)
T ss_pred             ccCCccccCcchhhhhhccccCCccccccccccceEEEEEHhhhhhhHHHHHHHhcccc-hhhHHHHHHHHHHHHHHHHH
Confidence                                              1368889999997777777654321 13667889999999999999


Q ss_pred             hc--------CCCcEEECCCCcEEEeccCCcee
Q 039406          202 HD--------DLANILLDFKFEAKVADFGLAKI  226 (243)
Q Consensus       202 H~--------~~~NiLl~~~~~~kl~DFG~a~~  226 (243)
                      |.        ||.||++|.++.|||+|||+|..
T Consensus       714 H~~giIHRDLKP~NIFLd~~~~VKIGDFGLAt~  746 (1351)
T KOG1035|consen  714 HDQGIIHRDLKPRNIFLDSRNSVKIGDFGLATD  746 (1351)
T ss_pred             HhCceeeccCCcceeEEcCCCCeeecccccchh
Confidence            76        67899999999999999999997

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=99.75  E-value=7e-18  Score=144.33  Aligned_cols=126  Identities=22%  Similarity=0.344  Sum_probs=105.1

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc-------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeC----------
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK-------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAG----------  155 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~-------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~----------  155 (243)
                      ++|...+.||.|+||.||+|....+.             ...+.+.+|+++|++++|+||+++++++...          
T Consensus         5 ~~y~~~~~Lg~g~~g~vy~~~~~~~~~~v~iK~i~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~   84 (342)
T cd07854           5 SRYMDLRPLGCGSNGLVFSAVDSDCDKRVAVKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVYEVLGPSGSDLTEDVGS   84 (342)
T ss_pred             cceEEEEEecCCCCEEEEEEEECCCCcEEEEEEEecCCCchHHHHHHHHHHHHhcCCCcchhhHhhhccccccccccccc
Confidence            68999999999999999999875542             1346688999999999999999999876543          


Q ss_pred             ----CeeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECC-CCcEEEeccC
Q 039406          156 ----SQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDF-KFEAKVADFG  222 (243)
Q Consensus       156 ----~~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~-~~~~kl~DFG  222 (243)
                          ...|+||||+. ++|.+++...   .+.+..++.++.|++.||.|||.        +++|||++. ++.+||+|||
T Consensus        85 ~~~~~~~~lv~e~~~-~~L~~~~~~~---~l~~~~~~~~~~qi~~aL~~LH~~givH~dikp~Nili~~~~~~~kl~dfg  160 (342)
T cd07854          85 LTELNSVYIVQEYME-TDLANVLEQG---PLSEEHARLFMYQLLRGLKYIHSANVLHRDLKPANVFINTEDLVLKIGDFG  160 (342)
T ss_pred             ccccceEEEEeeccc-ccHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEcCCCceEEECCcc
Confidence                35899999997 5898887532   48899999999999999999986        458999974 5678999999


Q ss_pred             CceecC
Q 039406          223 LAKIAS  228 (243)
Q Consensus       223 ~a~~~~  228 (243)
                      +++.+.
T Consensus       161 ~~~~~~  166 (342)
T cd07854         161 LARIVD  166 (342)
T ss_pred             cceecC
Confidence            998753

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.74  E-value=2.7e-17  Score=158.28  Aligned_cols=123  Identities=23%  Similarity=0.371  Sum_probs=102.7

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCch---------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccCCC
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGKE---------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNN  168 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~---------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~g  168 (243)
                      ...|...++||+|+||.||+|+...+..         ......+|+++|++++|||||++++++.+.+..|+|||||++|
T Consensus       689 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~l~~l~HpnIv~~~~~~~~~~~~~lv~Ey~~~g  768 (968)
T PLN00113        689 LSSLKEENVISRGKKGASYKGKSIKNGMQFVVKEINDVNSIPSSEIADMGKLQHPNIVKLIGLCRSEKGAYLIHEYIEGK  768 (968)
T ss_pred             HhhCCcccEEccCCCeeEEEEEECCCCcEEEEEEccCCccccHHHHHHHhhCCCCCcceEEEEEEcCCCCEEEEeCCCCC
Confidence            3567788899999999999998754321         1112345789999999999999999999999999999999999


Q ss_pred             CHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc-----------CCCcEEECCCCcEEEeccCCcee
Q 039406          169 TLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD-----------DLANILLDFKFEAKVADFGLAKI  226 (243)
Q Consensus       169 ~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~-----------~~~NiLl~~~~~~kl~DFG~a~~  226 (243)
                      +|.++++.     ++|..+..++.+++.||.|||.           |++|||++.++..++. ||.+..
T Consensus       769 ~L~~~l~~-----l~~~~~~~i~~~ia~~L~yLH~~~~~~iiH~dlkp~Nil~~~~~~~~~~-~~~~~~  831 (968)
T PLN00113        769 NLSEVLRN-----LSWERRRKIAIGIAKALRFLHCRCSPAVVVGNLSPEKIIIDGKDEPHLR-LSLPGL  831 (968)
T ss_pred             cHHHHHhc-----CCHHHHHHHHHHHHHHHHHhccCCCCCeecCCCCHHhEEECCCCceEEE-eccccc
Confidence            99999952     8899999999999999999993           4589999998888775 666544

>PRK10345 hypothetical protein; Provisional

Probab=99.73  E-value=6.4e-17  Score=128.68  Aligned_cols=119  Identities=18%  Similarity=0.185  Sum_probs=89.3

Q ss_pred             CCccceeeecCceEEEEEEecCCc------------hhHHHHHHHHHHHHhc-----CCCccceEEEEEEeCC---eeE-
Q 039406          101 FSDANLLRQDGFGYVHRGVLPNGK------------EGEREFQAEVEIISRV-----HHKHLVSLVGYYTAGS---QRM-  159 (243)
Q Consensus       101 ~~~~~~lg~G~~g~V~~~~~~~~~------------~~~~~~~~E~~~l~~l-----~hp~iv~~~~~~~~~~---~~~-  159 (243)
                      +...+.||+|+||.||.  +....            ...+.+.+|+.+|+.+     +|+||+++|++++++.   .++ 
T Consensus         4 L~~~~~LG~G~~~~Vy~--hp~~~~k~IKv~~~~~~~~~~~~~rEi~~l~~L~~~~~~h~nIvr~yg~~et~~g~g~v~~   81 (210)
T PRK10345          4 LSEQSPLGTGRHRKCYA--HPEDAQRCIKIVYHRGDGGDKEIRRELKYYAHLSRRLIDWSGIPRYYGTVETDCGTGYVYD   81 (210)
T ss_pred             cCCcceecCCCceEEEE--CCCCcCeEEEEEeccccchHHHHHHHHHHHHHhhccCCCCcccceeeEEEEeCCCCeEEEE
Confidence            34567999999999996  22211            1456789999999999     5799999999999873   434 


Q ss_pred             EEEec--cCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhh-hHhhc--------CCCcEEECC----CCcEEEec-cCC
Q 039406          160 LVYEF--VLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGL-AYLHD--------DLANILLDF----KFEAKVAD-FGL  223 (243)
Q Consensus       160 lv~e~--~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l-~~lH~--------~~~NiLl~~----~~~~kl~D-FG~  223 (243)
                      +||||  +.+++|.+++.+.   .+++.  ..++.+++.++ .|||.        ||+|||++.    ++.++|+| ||.
T Consensus        82 ~I~e~~G~~~~tL~~~l~~~---~~~e~--~~~~~~~L~~l~~yLh~~~IvhrDlKp~NILl~~~~~~~~~~~LiDg~G~  156 (210)
T PRK10345         82 VIADFDGKPSITLTEFAEQC---RYEED--VAQLRQLLKKLKRYLLDNRIVTMELKPQNILCQRISESEVIPVVCDNIGE  156 (210)
T ss_pred             EEecCCCCcchhHHHHHHcc---cccHh--HHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEeccCCCCCcEEEEECCCC
Confidence            78999  5579999999653   25544  35677888777 88876        568999974    34899999 555


Q ss_pred             cee
Q 039406          224 AKI  226 (243)
Q Consensus       224 a~~  226 (243)
                      ...
T Consensus       157 ~~~  159 (210)
T PRK10345        157 STF  159 (210)
T ss_pred             cce
Confidence            444

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=99.72  E-value=2.1e-17  Score=129.92  Aligned_cols=122  Identities=14%  Similarity=0.099  Sum_probs=88.9

Q ss_pred             cceeeecCceEEEEEEecCCch--------------h-------HHH-----------------HHHHHHHHHhcCCCcc
Q 039406          104 ANLLRQDGFGYVHRGVLPNGKE--------------G-------ERE-----------------FQAEVEIISRVHHKHL  145 (243)
Q Consensus       104 ~~~lg~G~~g~V~~~~~~~~~~--------------~-------~~~-----------------~~~E~~~l~~l~hp~i  145 (243)
                      ...||+|+||.||+|....++.              .       ..+                 ..+|+++|.++.++++
T Consensus         2 ~~~ig~G~~~~Vy~a~~~~g~~vAvKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~v   81 (190)
T cd05147           2 NGCISTGKEANVYHATTANGEERAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKSNPRKMVRTWAEKEMRNLKRLVTAGI   81 (190)
T ss_pred             CCccccccceEEEEEECCCCCEEEEEEEEecccccccHHHhhcCCchhhccccCCCHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            3689999999999998653211              0       112                 2349999999988776


Q ss_pred             ceEEEEEEeCCeeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHh-hc--------CCCcEEECCCCcE
Q 039406          146 VSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL-HD--------DLANILLDFKFEA  216 (243)
Q Consensus       146 v~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~l-H~--------~~~NiLl~~~~~~  216 (243)
                      .....+...  ..+|||||+.++++...+....  .+++..+..++.|++.+|.|+ |.        +|+|||++ ++.+
T Consensus        82 ~~p~~~~~~--~~~iVmE~i~g~~l~~~~~~~~--~~~~~~~~~i~~qi~~~L~~l~H~~giiHrDlkP~NIli~-~~~v  156 (190)
T cd05147          82 PCPEPILLK--SHVLVMEFIGDDGWAAPRLKDA--PLSESKARELYLQVIQIMRILYQDCRLVHADLSEYNLLYH-DGKL  156 (190)
T ss_pred             CCCcEEEec--CCEEEEEEeCCCCCcchhhhcC--CCCHHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEE-CCcE
Confidence            443333222  2389999999877765432222  488889999999999999998 45        46899998 5789


Q ss_pred             EEeccCCceecCCC
Q 039406          217 KVADFGLAKIASDV  230 (243)
Q Consensus       217 kl~DFG~a~~~~~~  230 (243)
                      +|+|||+|......
T Consensus       157 ~LiDFG~a~~~~~~  170 (190)
T cd05147         157 YIIDVSQSVEHDHP  170 (190)
T ss_pred             EEEEccccccCCCc
Confidence            99999999876543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.72  E-value=1.7e-16  Score=126.65  Aligned_cols=129  Identities=27%  Similarity=0.343  Sum_probs=111.4

Q ss_pred             CCccceeeecCceEEEEEEecCCch--------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccC
Q 039406          101 FSDANLLRQDGFGYVHRGVLPNGKE--------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVL  166 (243)
Q Consensus       101 ~~~~~~lg~G~~g~V~~~~~~~~~~--------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~  166 (243)
                      |...+.||.|++|.||++....+.+              ..+.+.+|++.+++++|+|++++++++......++++||+.
T Consensus         1 ~~~~~~i~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~   80 (225)
T smart00221        1 YELGKKLGEGAFGKVYLARDKGTGELVAVKVLKKEKTEKQREEFLREIRILKKLKHPNIVKLYGVFEDPEPLYLVMEYCE   80 (225)
T ss_pred             CceeeEeecCCCeEEEEEEEcCCCcEEEEEeeccccchHHHHHHHHHHHHHHhCCCCChhhheeeeecCCceEEEEeccC
Confidence            4567899999999999998765221              45678899999999999999999999999999999999999


Q ss_pred             CCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          167 NNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       167 ~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      +++|.+++...... +++.....++.+++.++.|||.        ++.||+++.++.++|+|||++..+...
T Consensus        81 ~~~L~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~lh~~~i~h~di~~~ni~v~~~~~~~l~d~g~~~~~~~~  151 (225)
T smart00221       81 GGDLFDYLRKKGGK-LSEEEARFYLRQILEALEYLHSLGIVHRDLKPENILLGMDGLVKLADFGLARFIHRD  151 (225)
T ss_pred             CCCHHHHHHhcccC-CCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEeeCceeeEecCc
Confidence            99999999765421 7888999999999999999976        347999999999999999999987654

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=99.71  E-value=4.5e-17  Score=132.20  Aligned_cols=117  Identities=18%  Similarity=0.089  Sum_probs=98.4

Q ss_pred             cCceEEEEEEecCCch--------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccCCCCHHHHhccCCCCC
Q 039406          110 DGFGYVHRGVLPNGKE--------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPT  181 (243)
Q Consensus       110 G~~g~V~~~~~~~~~~--------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~  181 (243)
                      |.||.||++++..+.+        ....+.+|...+....|+||+++++++...+..|+||||+.+++|.+++....  .
T Consensus         4 g~~~~v~~~~~~~~~~~~~~K~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~--~   81 (237)
T cd05576           4 GVIDKVLLVMDTRTQQTFILKGLRKSSEYSRERLTIIPHCVPNMVCLHKYIVSEDSVFLVLQHAEGGKLWSHISKFL--N   81 (237)
T ss_pred             cccceEEEEEEccCCcEEEEEeecchhhhhhHHHHHHhcCCCceeehhhheecCCeEEEEEecCCCCCHHHHHHHhc--C
Confidence            7899999998776543        11234556666666789999999999999999999999999999999986543  4


Q ss_pred             CCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          182 MDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       182 l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      +++..+..++.|++.||.|||.        +|+||+++.++.++|+|||++..+.
T Consensus        82 l~~~~~~~~~~ql~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~l~df~~~~~~~  136 (237)
T cd05576          82 IPEECVKRWAAEMVVALDALHREGIVCRDLNPNNILLDDRGHIQLTYFSRWSEVE  136 (237)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEEcCCCCEEEecccchhccc
Confidence            8999999999999999999987        4689999999999999999876654

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.71  E-value=2.3e-18  Score=134.62  Aligned_cols=128  Identities=16%  Similarity=0.271  Sum_probs=107.9

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCc----------hhHHHHHHHHHHHHhcC-CCccceEEEEEEeCC--eeEEEEec
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGK----------EGEREFQAEVEIISRVH-HKHLVSLVGYYTAGS--QRMLVYEF  164 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~----------~~~~~~~~E~~~l~~l~-hp~iv~~~~~~~~~~--~~~lv~e~  164 (243)
                      .++|++.+++|+|.|++||.|+...+.          ...+.+.+|++||..|. |+||++++++..+..  ...||+||
T Consensus        37 ~ddYeivrk~GRGKYSEVFeg~~~~~~eK~ViKiLKPVkkkKIkREikIL~nL~gg~NIi~L~DiV~Dp~SktpaLiFE~  116 (338)
T KOG0668|consen   37 QDDYEIVRKVGRGKYSEVFEGINITNNEKCVIKILKPVKKKKIKREIKILQNLRGGPNIIKLLDIVKDPESKTPSLIFEY  116 (338)
T ss_pred             cchHHHHHHHcCccHhhHhcccccCCCceEEEeeechHHHHHHHHHHHHHHhccCCCCeeehhhhhcCccccCchhHhhh
Confidence            478999999999999999999754433          25678899999999997 999999999987654  57799999


Q ss_pred             cCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCC-CcEEEeccCCceecCCC
Q 039406          165 VLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFK-FEAKVADFGLAKIASDV  230 (243)
Q Consensus       165 ~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~-~~~kl~DFG~a~~~~~~  230 (243)
                      +.+.+...+..     .++...++.++.+++.||.|||+        ||.|++||.. ..++|+|+|+|.++-..
T Consensus       117 v~n~Dfk~ly~-----tl~d~dIryY~~elLkALdyCHS~GImHRDVKPhNvmIdh~~rkLrlIDWGLAEFYHp~  186 (338)
T KOG0668|consen  117 VNNTDFKQLYP-----TLTDYDIRYYIYELLKALDYCHSMGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPG  186 (338)
T ss_pred             hccccHHHHhh-----hhchhhHHHHHHHHHHHHhHHHhcCcccccCCcceeeechhhceeeeeecchHhhcCCC
Confidence            98877766543     47778899999999999999986        6799999965 68999999999987543

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=99.71  E-value=1.4e-17  Score=150.84  Aligned_cols=133  Identities=21%  Similarity=0.150  Sum_probs=90.1

Q ss_pred             HhCCCCccceeeecCceEEEEEEecCC----ch------hHHHHHHHHHHHHhc---CCCccceEEEE------EEeCCe
Q 039406           97 ATDGFSDANLLRQDGFGYVHRGVLPNG----KE------GEREFQAEVEIISRV---HHKHLVSLVGY------YTAGSQ  157 (243)
Q Consensus        97 ~~~~~~~~~~lg~G~~g~V~~~~~~~~----~~------~~~~~~~E~~~l~~l---~hp~iv~~~~~------~~~~~~  157 (243)
                      ..++|...+.||+|+||.||+|++..+    ..      .......|+.+..++   .+.++..++..      ......
T Consensus       130 ~~~~y~l~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~~~~~~e~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (566)
T PLN03225        130 KKDDFVLGKKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATEYGAVEIWMNERVRRACPNSCADFVYGFLEPVSSKKEDE  209 (566)
T ss_pred             ccCCeEEeEEEeeCCCeEEEEEEEcCCccccCcEEEEEEecccchhHHHHHHHHHhhchhhHHHHHHhhhcccccccCCc
Confidence            457899999999999999999998765    21      111111222222222   22233222211      245667


Q ss_pred             eEEEEeccCCCCHHHHhccCCCC------------------CCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEEC
Q 039406          158 RMLVYEFVLNNTLVFHLHGKGQP------------------TMDWPTRIKIALGSAKGLAYLHD--------DLANILLD  211 (243)
Q Consensus       158 ~~lv~e~~~~g~L~~~l~~~~~~------------------~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~  211 (243)
                      ++|||||+.+++|.+++......                  ......+..++.|++.||.|||.        ||+|||++
T Consensus       210 ~~LV~ey~~~gsL~~~l~~~~~~~~v~~~l~~~~~~l~~~~~r~~~~i~~i~~qll~aL~yLH~~gIiHRDLKP~NILl~  289 (566)
T PLN03225        210 YWLVWRYEGESTLADLMQSKEFPYNVEPYLLGKVQDLPKGLERENKIIQTIMRQILFALDGLHSTGIVHRDVKPQNIIFS  289 (566)
T ss_pred             eEEEEEecCCCcHHHHHHhcCCchhHHHHhccchhhccccchhhHHHHHHHHHHHHHHHHHHHHCCEEeCcCCHHHEEEe
Confidence            99999999999999988654210                  01123456789999999999976        56899998


Q ss_pred             C-CCcEEEeccCCceecCC
Q 039406          212 F-KFEAKVADFGLAKIASD  229 (243)
Q Consensus       212 ~-~~~~kl~DFG~a~~~~~  229 (243)
                      . ++.+||+|||+|+.+..
T Consensus       290 ~~~~~~KL~DFGlA~~l~~  308 (566)
T PLN03225        290 EGSGSFKIIDLGAAADLRV  308 (566)
T ss_pred             CCCCcEEEEeCCCcccccc
Confidence            6 58999999999987643

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=99.70  E-value=1.6e-17  Score=132.72  Aligned_cols=128  Identities=20%  Similarity=0.340  Sum_probs=106.7

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCch------------hHHHHHHHHHHHHhc-CCCccceEEEE-EEeCCeeEEEEe
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGKE------------GEREFQAEVEIISRV-HHKHLVSLVGY-YTAGSQRMLVYE  163 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~------------~~~~~~~E~~~l~~l-~hp~iv~~~~~-~~~~~~~~lv~e  163 (243)
                      .+.|.+.+.||+|.||.+.+|.++.++.            ..+.|.+|...--.| .|.||+.-|++ |.+.+.++++||
T Consensus        23 ~d~y~I~k~lgeG~FgkIlL~eHr~s~t~ivlKavp~p~tt~~dF~rEfhY~~~Ls~H~hIi~tY~vaFqt~d~YvF~qE  102 (378)
T KOG1345|consen   23 EDVYTINKQLGEGRFGKILLAEHRQSKTRIVLKAVPRPQTTQADFVREFHYSFFLSPHQHIIDTYEVAFQTSDAYVFVQE  102 (378)
T ss_pred             hhhhhHHHHhcccceeeEEeeeccCCceEEEeeccCcchhhHHHHHHHhccceeeccchhhhHHHHHHhhcCceEEEeec
Confidence            4678899999999999999999887653            467788888765555 58999998874 778888999999


Q ss_pred             ccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEE-CCC-CcEEEeccCCceecC
Q 039406          164 FVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILL-DFK-FEAKVADFGLAKIAS  228 (243)
Q Consensus       164 ~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl-~~~-~~~kl~DFG~a~~~~  228 (243)
                      |++.|+|..-+...+   +-+.....++.|++.||+|+|.        |++|||| +.+ .+|||||||+.+..+
T Consensus       103 ~aP~gdL~snv~~~G---igE~~~K~v~~ql~SAi~fMHsknlVHRdlK~eNiLif~~df~rvKlcDFG~t~k~g  174 (378)
T KOG1345|consen  103 FAPRGDLRSNVEAAG---IGEANTKKVFAQLLSAIEFMHSKNLVHRDLKAENILIFDADFYRVKLCDFGLTRKVG  174 (378)
T ss_pred             cCccchhhhhcCccc---ccHHHHHHHHHHHHHHHHHhhccchhhcccccceEEEecCCccEEEeeecccccccC
Confidence            999999998886543   7788889999999999999987        4589998 333 589999999988754

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=99.70  E-value=2e-16  Score=124.40  Aligned_cols=123  Identities=13%  Similarity=0.018  Sum_probs=91.4

Q ss_pred             cceeeecCceEEEEEEecCCch--------------h------------------------HHHHHHHHHHHHhcCCCcc
Q 039406          104 ANLLRQDGFGYVHRGVLPNGKE--------------G------------------------EREFQAEVEIISRVHHKHL  145 (243)
Q Consensus       104 ~~~lg~G~~g~V~~~~~~~~~~--------------~------------------------~~~~~~E~~~l~~l~hp~i  145 (243)
                      .+.||+|+||.||+|...++..              .                        ...+.+|...+.++.|++|
T Consensus         2 ~~~ig~G~~~~Vy~a~~~~g~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i   81 (190)
T cd05145           2 NGCISTGKEANVYHARTGDGEELAVKIYKTSTLSFKDRDKYIEGDPRFRSRYSKSNPRKLVFAWAEKEFRNLKRLYEAGV   81 (190)
T ss_pred             CceeecCCCcEEEEEEcCCCCEEEEEEEEcCcceEeeHHHHhcCCcccccccccCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            4689999999999998652211              0                        1223578999999999988


Q ss_pred             ceEEEEEEeCCeeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc---------CCCcEEECCCCcE
Q 039406          146 VSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD---------DLANILLDFKFEA  216 (243)
Q Consensus       146 v~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~---------~~~NiLl~~~~~~  216 (243)
                      .....+....  .||||||++|+++...+....  .++......++.+++.+|.++|.         +|+|||++ ++.+
T Consensus        82 ~~p~~~~~~~--~~lVmE~~~g~~~~~~~l~~~--~~~~~~~~~i~~~l~~~l~~lH~~~givHrDlkP~NIll~-~~~~  156 (190)
T cd05145          82 PVPEPILLKK--NVLVMEFIGDDGSPAPRLKDV--PLEEEEAEELYEQVVEQMRRLYQEAGLVHGDLSEYNILYH-DGKP  156 (190)
T ss_pred             CCceEEEecC--CEEEEEEecCCCchhhhhhhc--cCCHHHHHHHHHHHHHHHHHHHHhCCEecCCCChhhEEEE-CCCE
Confidence            5554443332  489999998875543322222  36778889999999999999875         46899998 8999


Q ss_pred             EEeccCCceecCCCC
Q 039406          217 KVADFGLAKIASDVN  231 (243)
Q Consensus       217 kl~DFG~a~~~~~~~  231 (243)
                      +|+|||+|+.+....
T Consensus       157 ~liDFG~a~~~~~~~  171 (190)
T cd05145         157 YIIDVSQAVELDHPN  171 (190)
T ss_pred             EEEEcccceecCCCC
Confidence            999999999886543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=99.67  E-value=3.3e-16  Score=141.55  Aligned_cols=120  Identities=17%  Similarity=0.187  Sum_probs=97.8

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch-------------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE-------------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRM  159 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~-------------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~  159 (243)
                      ..|...+.||+|+||.||++.+.....                   ..+++.+|+++|+.++|++|+..+.++.+.+..+
T Consensus       333 ~~~~~~~~iG~G~~g~Vy~~~~~~~~~v~k~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~  412 (535)
T PRK09605        333 RRKIPDHLIGKGAEADIKKGEYLGRDAVIKERVPKGYRHPELDERLRTERTRAEARLLSEARRAGVPTPVIYDVDPEEKT  412 (535)
T ss_pred             cccCccceeccCCcEEEEEEeecCccceeEEEecccccchhHHHHHHHHHHHHHHHHHHhhcccCCCeeEEEEEeCCCCE
Confidence            455678899999999999975432211                   1346788999999999999998887777777889


Q ss_pred             EEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          160 LVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       160 lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      +||||+++++|.+++.          ....++.+++.+|.|||.        +|+|||+ .++.++|+|||+|+....
T Consensus       413 lv~E~~~g~~L~~~l~----------~~~~~~~~i~~~L~~lH~~giiHrDlkp~NILl-~~~~~~liDFGla~~~~~  479 (535)
T PRK09605        413 IVMEYIGGKDLKDVLE----------GNPELVRKVGEIVAKLHKAGIVHGDLTTSNFIV-RDDRLYLIDFGLGKYSDL  479 (535)
T ss_pred             EEEEecCCCcHHHHHH----------HHHHHHHHHHHHHHHHHhCCCccCCCChHHEEE-ECCcEEEEeCcccccCCc
Confidence            9999999999998874          345678889999999876        4689999 678999999999987643

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=99.66  E-value=3.7e-16  Score=140.75  Aligned_cols=142  Identities=23%  Similarity=0.286  Sum_probs=107.5

Q ss_pred             CCccceeeecCce-EEEEEEecCCchhHHH--------HHHHHHHHHhc-CCCccceEEEEEEeCCeeEEEEeccCCCCH
Q 039406          101 FSDANLLRQDGFG-YVHRGVLPNGKEGERE--------FQAEVEIISRV-HHKHLVSLVGYYTAGSQRMLVYEFVLNNTL  170 (243)
Q Consensus       101 ~~~~~~lg~G~~g-~V~~~~~~~~~~~~~~--------~~~E~~~l~~l-~hp~iv~~~~~~~~~~~~~lv~e~~~~g~L  170 (243)
                      |.-.+++|.|+.| .||+|.+.......++        ..+||.+|+.- +|+|||++|+.-.+....||..|+|.. +|
T Consensus       511 ~~~~eilG~Gs~Gt~Vf~G~ye~R~VAVKrll~e~~~~A~rEi~lL~eSD~H~NviRyyc~E~d~qF~YIalELC~~-sL  589 (903)
T KOG1027|consen  511 FSPKEILGYGSNGTVVFRGVYEGREVAVKRLLEEFFDFAQREIQLLQESDEHPNVIRYYCSEQDRQFLYIALELCAC-SL  589 (903)
T ss_pred             eccHHHcccCCCCcEEEEEeeCCceehHHHHhhHhHHHHHHHHHHHHhccCCCceEEEEeeccCCceEEEEehHhhh-hH
Confidence            5556789999887 4899999887765554        36788888888 599999999998899999999999965 99


Q ss_pred             HHHhccC--CCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECC---C--CcEEEeccCCceecCCCCcee-
Q 039406          171 VFHLHGK--GQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDF---K--FEAKVADFGLAKIASDVNTHV-  234 (243)
Q Consensus       171 ~~~l~~~--~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~---~--~~~kl~DFG~a~~~~~~~~~~-  234 (243)
                      .+++...  ..........+.++.|++.||.+||.        ||.||||+.   +  .+++|+|||+++.+..+.... 
T Consensus       590 ~dlie~~~~d~~~~~~i~~~~~l~q~~~GlaHLHsl~iVHRDLkPQNILI~~~~~~~~~ra~iSDfglsKkl~~~~sS~~  669 (903)
T KOG1027|consen  590 QDLIESSGLDVEMQSDIDPISVLSQIASGLAHLHSLKIVHRDLKPQNILISVPSADGTLRAKISDFGLSKKLAGGKSSFS  669 (903)
T ss_pred             HHHHhccccchhhcccccHHHHHHHHHHHHHHHHhcccccccCCCceEEEEccCCCcceeEEecccccccccCCCcchhh
Confidence            9999873  11111113456778888888888865        679999975   3  479999999999986554322 


Q ss_pred             -eeccccccC
Q 039406          235 -STRVMGTFG  243 (243)
Q Consensus       235 -~~~~~GT~G  243 (243)
                       .....||-|
T Consensus       670 r~s~~sGt~G  679 (903)
T KOG1027|consen  670 RLSGGSGTSG  679 (903)
T ss_pred             cccCCCCccc
Confidence             234566655

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.66  E-value=3.3e-15  Score=117.26  Aligned_cols=123  Identities=30%  Similarity=0.423  Sum_probs=106.4

Q ss_pred             eeecCceEEEEEEecCCch--------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccCCCCHHH
Q 039406          107 LRQDGFGYVHRGVLPNGKE--------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVF  172 (243)
Q Consensus       107 lg~G~~g~V~~~~~~~~~~--------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~g~L~~  172 (243)
                      ||+|.+|.||++....+.+              ..+.+.+|+..++.++|++|+++++++......+++|||+.+++|.+
T Consensus         1 l~~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~~~e~~~~~~l~~   80 (215)
T cd00180           1 LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVFEDENHLYLVMEYCEGGSLKD   80 (215)
T ss_pred             CCcCCceEEEEEEecCCCcEEEEEEeccccchhHHHHHHHHHHHHHhcCCCCeeeEeeeeecCCeEEEEEecCCCCcHHH
Confidence            6899999999998764221              13678999999999999999999999999999999999999899999


Q ss_pred             HhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECC-CCcEEEeccCCceecCCC
Q 039406          173 HLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDF-KFEAKVADFGLAKIASDV  230 (243)
Q Consensus       173 ~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~-~~~~kl~DFG~a~~~~~~  230 (243)
                      ++.... ..+++..+..++.+++.+|.+||.        ++.||+++. ++.++|+|||.+......
T Consensus        81 ~~~~~~-~~~~~~~~~~~~~~l~~~l~~lh~~~~~H~dl~~~ni~~~~~~~~~~l~d~~~~~~~~~~  146 (215)
T cd00180          81 LLKENE-GKLSEDEILRILLQILEGLEYLHSNGIIHRDLKPENILLDSDNGKVKLADFGLSKLLTSD  146 (215)
T ss_pred             HHHhcc-CCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHhhEEEeCCCCcEEEecCCceEEccCC
Confidence            987542 248889999999999999999987        458999999 899999999999877543

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>PRK14879 serine/threonine protein kinase; Provisional

Probab=99.66  E-value=1.1e-15  Score=121.88  Aligned_cols=117  Identities=18%  Similarity=0.281  Sum_probs=94.8

Q ss_pred             ceeeecCceEEEEEEecCCch-------------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEecc
Q 039406          105 NLLRQDGFGYVHRGVLPNGKE-------------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFV  165 (243)
Q Consensus       105 ~~lg~G~~g~V~~~~~~~~~~-------------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~  165 (243)
                      +.||+|++|.||+|.+.....                   ....+.+|+.++..++|++|.....++.+.+..++||||+
T Consensus         2 ~~l~~G~~~~vy~~~~~~~~~~vK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e~~   81 (211)
T PRK14879          2 KLIKRGAEAEIYLGDFLGIKAVIKWRIPKRYRHPELDERIRRERTRREARIMSRARKAGVNVPAVYFVDPENFIIVMEYI   81 (211)
T ss_pred             cccccCceEEEEEEeeCCCceEEEEeCCcCCcChHHHHHHHHHHHHHHHHHHHHHHHCCCCCCeEEEEeCCCCEEEEEEe
Confidence            579999999999996432211                   1245778999999999999888777777778899999999


Q ss_pred             CCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          166 LNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       166 ~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      +|++|.+++....     + ....++.+++.+|.++|.        ++.|||++ ++.++|+|||+++...
T Consensus        82 ~G~~L~~~~~~~~-----~-~~~~i~~~i~~~l~~lH~~~i~H~Dl~p~Nil~~-~~~~~liDf~~a~~~~  145 (211)
T PRK14879         82 EGEPLKDLINSNG-----M-EELELSREIGRLVGKLHSAGIIHGDLTTSNMILS-GGKIYLIDFGLAEFSK  145 (211)
T ss_pred             CCcCHHHHHHhcc-----H-HHHHHHHHHHHHHHHHHhCCcccCCCCcccEEEE-CCCEEEEECCcccCCC
Confidence            9999999885422     2 677888899999999876        35899999 8899999999998643

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.64  E-value=3.1e-15  Score=127.98  Aligned_cols=114  Identities=19%  Similarity=0.248  Sum_probs=97.0

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc------------hhHHHHHHHHHHHHhcC-----C---CccceEEEEEEe----
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK------------EGEREFQAEVEIISRVH-----H---KHLVSLVGYYTA----  154 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~------------~~~~~~~~E~~~l~~l~-----h---p~iv~~~~~~~~----  154 (243)
                      .+|.+.++||.|-|++||+|.+....            ...+..+.||++|++++     |   .+||+|++.|..    
T Consensus        78 gRY~v~rKLGWGHFSTVWLawDtq~~r~VAlKVvKSAqhYtEaAlDEIklL~~v~~~Dp~~~~~~~VV~LlD~FkhsGpN  157 (590)
T KOG1290|consen   78 GRYHVQRKLGWGHFSTVWLAWDTQNKRYVALKVVKSAQHYTEAALDEIKLLQQVREGDPNDPGKKCVVQLLDHFKHSGPN  157 (590)
T ss_pred             ceEEEEEeccccccceeEEEeeccCCeEEEEEEEehhhHHHHHHHHHHHHHHHHHhcCCCCCCCceeeeeeccceecCCC
Confidence            67889999999999999999876654            35677889999999984     2   379999999974    


Q ss_pred             CCeeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc---------CCCcEEECCC
Q 039406          155 GSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD---------DLANILLDFK  213 (243)
Q Consensus       155 ~~~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~---------~~~NiLl~~~  213 (243)
                      +.++|||+|++ |.+|..+|.....+.++...++.|+.|||.||.|||+         ||+|||+..+
T Consensus       158 G~HVCMVfEvL-GdnLLklI~~s~YrGlpl~~VK~I~~qvL~GLdYLH~ecgIIHTDlKPENvLl~~~  224 (590)
T KOG1290|consen  158 GQHVCMVFEVL-GDNLLKLIKYSNYRGLPLSCVKEICRQVLTGLDYLHRECGIIHTDLKPENVLLCST  224 (590)
T ss_pred             CcEEEEEehhh-hhHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHhcCccccCCCcceeeeecc
Confidence            44899999999 7799999987766679999999999999999999998         5799998543

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.64  E-value=2.3e-15  Score=123.52  Aligned_cols=132  Identities=18%  Similarity=0.222  Sum_probs=108.8

Q ss_pred             CCCCccceeeecCceEEEEEEecC-----------CchhHHHHHHHHHHHHhc-CCCccceEEEEEEeCCeeEEEEeccC
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPN-----------GKEGEREFQAEVEIISRV-HHKHLVSLVGYYTAGSQRMLVYEFVL  166 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~-----------~~~~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~~~lv~e~~~  166 (243)
                      -+|.++++||+|.||++|.|...-           .+...-.+..|.+..+.| ..++|..+|-+..++-+-.||||++ 
T Consensus        28 ~hyrVGkKIGeGsFG~lf~G~Nl~nne~VAIKfEPrkS~APQLrdEYr~YKlL~g~~GIP~vYYFGqeG~~NiLVidLL-  106 (449)
T KOG1165|consen   28 PHYRVGKKIGEGSFGVLFLGKNLYNNEPVAIKFEPRKSEAPQLRDEYRTYKLLGGTEGIPQVYYFGQEGKYNILVIDLL-  106 (449)
T ss_pred             ccceeccccccCcceeeecccccccCceEEEEeccccCCcchHHHHHHHHHHHcCCCCCCceeeeccccchhhhhhhhh-
Confidence            579999999999999999996322           222455678898888888 4799999998888888899999998 


Q ss_pred             CCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCC-----CcEEEeccCCceecCCCCc
Q 039406          167 NNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFK-----FEAKVADFGLAKIASDVNT  232 (243)
Q Consensus       167 ~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~-----~~~kl~DFG~a~~~~~~~~  232 (243)
                      |-+|+|+..-.++ .|+...++.++.|++.-++|+|.        ||+|+||...     ..|.|+|||+|+.+.+..+
T Consensus       107 GPSLEDLFD~CgR-~FSvKTV~miA~Qmi~rie~vH~k~LIYRDIKPdNFLIGrp~~k~~n~IhiiDFGmAK~YrDp~T  184 (449)
T KOG1165|consen  107 GPSLEDLFDLCGR-RFSVKTVAMIAKQMITRIEYVHEKDLIYRDIKPDNFLIGRPGTKDANVIHIIDFGMAKEYRDPKT  184 (449)
T ss_pred             CcCHHHHHHHhcC-cccHHhHHHHHHHHHHHHHHHHhcceeecccCccceeecCCCCCCCceEEEEeccchhhhcCccc
Confidence            7788887654333 59999999999999999999997        6799999643     4689999999999877544

>PRK12274 serine/threonine protein kinase; Provisional

Probab=99.63  E-value=4.3e-15  Score=117.01  Aligned_cols=115  Identities=19%  Similarity=0.138  Sum_probs=85.2

Q ss_pred             CccceeeecCceEEEEEEecCCch---------------hHHHHHHHHHHHHhcC-CCccceEEEEEEeCCeeEEEEecc
Q 039406          102 SDANLLRQDGFGYVHRGVLPNGKE---------------GEREFQAEVEIISRVH-HKHLVSLVGYYTAGSQRMLVYEFV  165 (243)
Q Consensus       102 ~~~~~lg~G~~g~V~~~~~~~~~~---------------~~~~~~~E~~~l~~l~-hp~iv~~~~~~~~~~~~~lv~e~~  165 (243)
                      .....|++|+||+||.+.....+.               ....+.+|+++|++|. |++|.+++++    +..|++|||+
T Consensus         5 ~~~~~l~~~~f~~v~~~~~~~~k~~~~~l~~~~~~~~~~~~~l~~rE~~iL~~L~~~~~vP~ll~~----~~~~lvmeyI   80 (218)
T PRK12274          5 AVNEPLKSDTFGRILLVRGGERKFVRRDLSAAPWWLRGVAWWLARREALALRQLDGLPRTPRLLHW----DGRHLDRSYL   80 (218)
T ss_pred             ccceeecCCCcceEEEeecCCceeeecccccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEE----cCEEEEEeee
Confidence            345789999999999775432221               1225789999999995 5889999886    4579999999


Q ss_pred             CCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhh------cCC---CcEEECCCCcEEEeccCCceecCC
Q 039406          166 LNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLH------DDL---ANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       166 ~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH------~~~---~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      .|.+|.+.+...         ...++.+++.+|.++|      +|+   +|||++.++.++|+|||+|.....
T Consensus        81 ~G~~L~~~~~~~---------~~~~~~qi~~~L~~lH~~GIvHrDL~kp~NILv~~~g~i~LIDFG~A~~~~~  144 (218)
T PRK12274         81 AGAAMYQRPPRG---------DLAYFRAARRLLQQLHRCGVAHNDLAKEANWLVQEDGSPAVIDFQLAVRGNP  144 (218)
T ss_pred             cCccHHhhhhhh---------hHHHHHHHHHHHHHHHHCcCccCCCCCcceEEEcCCCCEEEEECCCceecCC
Confidence            999997654211         1235566666666665      454   699999999999999999996554

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.63  E-value=5.9e-16  Score=136.11  Aligned_cols=130  Identities=21%  Similarity=0.243  Sum_probs=107.3

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCch---------hHHHHHHHHHHHHhc-CCCccceEEEEEEeCCeeEEEEeccCC
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGKE---------GEREFQAEVEIISRV-HHKHLVSLVGYYTAGSQRMLVYEFVLN  167 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~---------~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~~~lv~e~~~~  167 (243)
                      ++.|.....+|.|+|+.|-.|....+..         ......+|+.++... +|+||+++.+.+.+..++|+|||++.|
T Consensus       321 ~~~y~~~~~~~~gs~s~~~~~~~~~t~~~~~vkii~~~~~~~~~e~~~~~~~~~h~niv~~~~v~~~~~~~~~v~e~l~g  400 (612)
T KOG0603|consen  321 TESYEFREELGEGSFSAVKYCESSPTDQEPAVKIISKRADDNQDEIPISLLVRDHPNIVKSHDVYEDGKEIYLVMELLDG  400 (612)
T ss_pred             chhhccccccCCCCccceeeeeccccccchhheeccccccccccccchhhhhcCCCcceeecceecCCceeeeeehhccc
Confidence            4678888889999999999998766543         112356688776666 799999999999999999999999999


Q ss_pred             CCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEE-CCCCcEEEeccCCceecCCC
Q 039406          168 NTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILL-DFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       168 g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl-~~~~~~kl~DFG~a~~~~~~  230 (243)
                      +.|.+.+.....  +. ..+..|+.+|+.++.|||.        +|+|||+ +..++++|+|||+++.....
T Consensus       401 ~ell~ri~~~~~--~~-~e~~~w~~~lv~Av~~LH~~gvvhRDLkp~NIL~~~~~g~lrltyFG~a~~~~~~  469 (612)
T KOG0603|consen  401 GELLRRIRSKPE--FC-SEASQWAAELVSAVDYLHEQGVVHRDLKPGNILLDGSAGHLRLTYFGFWSELERS  469 (612)
T ss_pred             cHHHHHHHhcch--hH-HHHHHHHHHHHHHHHHHHhcCeeecCCChhheeecCCCCcEEEEEechhhhCchh
Confidence            999888765442  33 6777899999999999987        5799999 58899999999999987655

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=99.62  E-value=2.6e-15  Score=118.67  Aligned_cols=113  Identities=18%  Similarity=0.232  Sum_probs=87.5

Q ss_pred             eeeecCceEEEEEEecCCch-------------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccC
Q 039406          106 LLRQDGFGYVHRGVLPNGKE-------------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVL  166 (243)
Q Consensus       106 ~lg~G~~g~V~~~~~~~~~~-------------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~  166 (243)
                      .||+|+||.||++.+...+.                   ...++.+|++++..++|.++.....++...+..++||||++
T Consensus         1 ~ig~G~~~~vy~~~~~~~~~viK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e~~~   80 (199)
T TIGR03724         1 LIAKGAEAIIYLGDFLGLKAVIKERVPKSYRHPELDERIRRERTRNEARLLSRARKAGVNTPVVYDVDPDNKTIVMEYIE   80 (199)
T ss_pred             CCCCCceEEEEEeecCCccEEEEEecCCcCcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEEEC
Confidence            48999999999997433211                   12556789999999998876655555666777899999999


Q ss_pred             CCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          167 NNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       167 ~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      |++|.+++....   .      .++.+++.+|.+||.        ++.|||++ ++.++|+|||+++...
T Consensus        81 g~~l~~~~~~~~---~------~~~~~i~~~l~~lH~~gi~H~Dl~~~Nil~~-~~~~~liDfg~a~~~~  140 (199)
T TIGR03724        81 GKPLKDVIEEGN---D------ELLREIGRLVGKLHKAGIVHGDLTTSNIIVR-DDKLYLIDFGLGKYSD  140 (199)
T ss_pred             CccHHHHHhhcH---H------HHHHHHHHHHHHHHHCCeecCCCCcceEEEE-CCcEEEEECCCCcCCC
Confidence            999998875421   1      667778888888766        35899999 8999999999998754

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=99.61  E-value=5.1e-15  Score=119.09  Aligned_cols=118  Identities=26%  Similarity=0.324  Sum_probs=100.9

Q ss_pred             CceEEEEEEecCCch-------------h-HHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccCCCCHHHHhcc
Q 039406          111 GFGYVHRGVLPNGKE-------------G-EREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHG  176 (243)
Q Consensus       111 ~~g~V~~~~~~~~~~-------------~-~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~  176 (243)
                      +||.||+|+...+.+             . .+.+.+|++.+++++|+||+++++++......+++|||+.+++|.+++..
T Consensus         1 ~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L~~~~~~   80 (244)
T smart00220        1 SFGKVYLARDKKTGKLVAIKVIKKEKIKKKRERILREISILKKLKHPNIVRLYDVFEDEDKLYLVMEYCDGGDLFDLLKK   80 (244)
T ss_pred             CceEEEEEEECCCCcEEEEEEecccccccHHHHHHHHHHHHHhCCCCcHHHHHhheeeCCEEEEEEeCCCCCCHHHHHHh
Confidence            467777777654221             1 67889999999999999999999999999999999999999999999875


Q ss_pred             CCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          177 KGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       177 ~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      ...  +++..+..++.+++.++.|||.        ++.||+++.++.++|+|||++......
T Consensus        81 ~~~--~~~~~~~~~~~~l~~~l~~lh~~~i~h~~i~~~ni~~~~~~~~~l~d~~~~~~~~~~  140 (244)
T smart00220       81 RGR--LSEDEARFYARQILSALEYLHSNGIIHRDLKPENILLDEDGHVKLADFGLARQLDPG  140 (244)
T ss_pred             ccC--CCHHHHHHHHHHHHHHHHHHHHcCeecCCcCHHHeEECCCCcEEEccccceeeeccc
Confidence            443  7889999999999999999976        347999999999999999999987653

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=99.59  E-value=1.3e-14  Score=116.33  Aligned_cols=122  Identities=13%  Similarity=0.124  Sum_probs=91.3

Q ss_pred             HhCCCCccceeeecCceEEEEEEecCCc--------------hhHHH------HHHHHHHHHhcCCCccceEEEEEEeC-
Q 039406           97 ATDGFSDANLLRQDGFGYVHRGVLPNGK--------------EGERE------FQAEVEIISRVHHKHLVSLVGYYTAG-  155 (243)
Q Consensus        97 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~--------------~~~~~------~~~E~~~l~~l~hp~iv~~~~~~~~~-  155 (243)
                      ..++|...++||+|+||.||+......+              .....      +.+|+..+.+++|++|..+.+++... 
T Consensus        29 l~~~y~~~~~l~~~~f~~v~l~~~~~~~~iiKvf~~~~~~~~~~~~~f~~g~~~e~Ea~~l~rL~~~GI~~~~d~~~~~~  108 (232)
T PRK10359         29 LSYNIKTIKVFRNIDDTKVSLIDTDYGKYILKVFAPKVKRTERFLKSFVKGDYYENLIVQTDRVRSEGLASLNDFYLLAE  108 (232)
T ss_pred             hhCceEEEEEecCCCceEEEEEecCCCcEEEEEechhcCchHHHHHhhhhhHHHHHHHHHHHHHHHCCCCcceEeeeecc
Confidence            4578999999999999999997553211              12222      57899999999999999999886643 


Q ss_pred             -------CeeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHh------hcC--CCcEEECCCCcEEEec
Q 039406          156 -------SQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL------HDD--LANILLDFKFEAKVAD  220 (243)
Q Consensus       156 -------~~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~l------H~~--~~NiLl~~~~~~kl~D  220 (243)
                             +..+|||||++|.+|.++..      ++..    ...+++.+|..|      |+|  |+|||++.+| ++|+|
T Consensus       109 ~~~~~~~~~~~lvmEyi~G~tL~~~~~------~~~~----~~~~i~~~l~~lH~~gi~H~Dikp~Nili~~~g-i~liD  177 (232)
T PRK10359        109 RKTLRYAHTYIMLIEYIEGVELNDMPE------ISED----VKAKIKASIESLHQHGMVSGDPHKGNFIVSKNG-LRIID  177 (232)
T ss_pred             cccccccCCeEEEEEEECCccHHHhhh------ccHH----HHHHHHHHHHHHHHcCCccCCCChHHEEEeCCC-EEEEE
Confidence                   35899999999999988742      2222    233555555555      555  4899999988 99999


Q ss_pred             cCCceecCC
Q 039406          221 FGLAKIASD  229 (243)
Q Consensus       221 FG~a~~~~~  229 (243)
                      ||..+...+
T Consensus       178 fg~~~~~~e  186 (232)
T PRK10359        178 LSGKRCTAQ  186 (232)
T ss_pred             CCCcccccc
Confidence            999887643

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.57  E-value=1.6e-14  Score=122.72  Aligned_cols=125  Identities=18%  Similarity=0.262  Sum_probs=103.9

Q ss_pred             CCCccceeeecCceEEEEEEecCCc--h------------hHHHHHHHHHHHHhcCC----CccceEEEEE-EeCCeeEE
Q 039406          100 GFSDANLLRQDGFGYVHRGVLPNGK--E------------GEREFQAEVEIISRVHH----KHLVSLVGYY-TAGSQRML  160 (243)
Q Consensus       100 ~~~~~~~lg~G~~g~V~~~~~~~~~--~------------~~~~~~~E~~~l~~l~h----p~iv~~~~~~-~~~~~~~l  160 (243)
                      +|.+.+.||+|+||.||.+......  .            ....+..|+.+|..+..    .++..+++.+ ..+...||
T Consensus        19 ~~~i~~~iG~G~fG~V~~v~~~~~~~~~~a~K~e~~~~~~~~~~l~~E~~vl~~l~~~~~~~~~~~~~~~G~~~~~~~~i   98 (322)
T KOG1164|consen   19 RYKLGKKIGEGGFGAVYLVSDKSEKNKEYAKKLEKKELGSKPSVLKIEIQVLKKLEKKNGPSHFPKLLDHGRSTEDFNFI   98 (322)
T ss_pred             ceEEeeeccccCCceEEEEEecCCCCeeEEEEEEEecccCCCccchhHHHHHHHHhhhcCCCCCCEEEEeccCCCceeEE
Confidence            7999999999999999999876543  1            11157889999998863    6899999998 57788999


Q ss_pred             EEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCC-----CcEEEeccCCce
Q 039406          161 VYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFK-----FEAKVADFGLAK  225 (243)
Q Consensus       161 v~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~-----~~~kl~DFG~a~  225 (243)
                      ||+.+ |.+|.++........++...++.++.|++.+|++||+        ||+|+++...     ..+.|.|||+|+
T Consensus        99 VM~l~-G~sL~dl~~~~~~~~fs~~T~l~ia~q~l~~l~~lH~~G~iHRDiKp~N~~~g~~~~~~~~~~~llDfGlar  175 (322)
T KOG1164|consen   99 VMSLL-GPSLEDLRKRNPPGRFSRKTVLRIAIQNLNALEDLHSKGFIHRDIKPENFVVGQSSRSEVRTLYLLDFGLAR  175 (322)
T ss_pred             EEecc-CccHHHHHHhCCCCCcCHhHHHHHHHHHHHHHHHHHhcCcccCCcCHHHeeecCCCCcccceEEEEecCCCc
Confidence            99988 8899998865554569999999999999999987765        5689999754     469999999999

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.55  E-value=1.1e-14  Score=114.94  Aligned_cols=132  Identities=17%  Similarity=0.210  Sum_probs=106.9

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCch-----------hHHHHHHHHHHHHhcCC-CccceEEEEEEeCCeeEEEEecc
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGKE-----------GEREFQAEVEIISRVHH-KHLVSLVGYYTAGSQRMLVYEFV  165 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~-----------~~~~~~~E~~~l~~l~h-p~iv~~~~~~~~~~~~~lv~e~~  165 (243)
                      .+.|.++++||.|+||.+|.|......+           ..-.+..|.++.+.|++ ..|..+..++.+..+-.+||+++
T Consensus        14 ~gky~lvrkiGsGSFGdIy~~~~i~~ge~VAiK~Es~~a~hpqL~yEskvY~iL~~g~GiP~i~~y~~e~~ynvlVMdLL   93 (341)
T KOG1163|consen   14 GGKYKLVRKIGSGSFGDIYLGISITSGEEVAIKLESSKAKHPQLLYESKVYRILQGGVGIPHIRHYGTEKDYNVLVMDLL   93 (341)
T ss_pred             ccceEEEEeecCCchhheeeeeeccCCceEEEEeecccCCCcchhHHHHHHHHhccCCCCchhhhhccccccceeeeecc
Confidence            3789999999999999999997544322           23457789999998864 67888888888888999999998


Q ss_pred             CCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCC---CcEEEeccCCceecCCCC
Q 039406          166 LNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFK---FEAKVADFGLAKIASDVN  231 (243)
Q Consensus       166 ~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~---~~~kl~DFG~a~~~~~~~  231 (243)
                       |.+|+++..-... .++...++.++-|++.-++|+|.        ||+|+|+.-+   ..+.|+|||+|+.+.+..
T Consensus        94 -GPsLEdLfnfC~R-~ftmkTvLMLaDQml~RiEyvH~r~fiHRDIKPdNFLMGlgrh~~kl~LIDFGLaKky~d~~  168 (341)
T KOG1163|consen   94 -GPSLEDLFNFCSR-RFTMKTVLMLADQMLSRIEYVHLRNFIHRDIKPDNFLMGLGRHCNKLYLIDFGLAKKYRDIR  168 (341)
T ss_pred             -CccHHHHHHHHhh-hhhHHhHHHHHHHHHHHHHHHHhhccccccCCccceeeccccccceEEEEeccchhhhcccc
Confidence             8899888753322 48889999999999999999875        6799998644   578999999999986644

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=99.55  E-value=1.8e-14  Score=113.92  Aligned_cols=127  Identities=13%  Similarity=0.018  Sum_probs=90.6

Q ss_pred             HHHHHhCCCCccceeeecCceEEEEEEecCCch----------------------------------hHHHHHHHHHHHH
Q 039406           93 ELARATDGFSDANLLRQDGFGYVHRGVLPNGKE----------------------------------GEREFQAEVEIIS  138 (243)
Q Consensus        93 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~----------------------------------~~~~~~~E~~~l~  138 (243)
                      ++......|...+.||+|+||.||++....+..                                  ....+.+|+.++.
T Consensus         9 ~~~~~~~~~~~~~~i~~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~   88 (198)
T cd05144           9 TLVKRGVVESLGNQIGVGKESDVYLALDPDGNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEFAALK   88 (198)
T ss_pred             HHHHcCchhhcCCccccCcceEEEEEEcCCCCEEEEEEEecccchhhhhcchHHHHhccccchhHHHhHHHHHHHHHHHH
Confidence            444444447888999999999999997653211                                  0123567889999


Q ss_pred             hcCCCc--cceEEEEEEeCCeeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcE
Q 039406          139 RVHHKH--LVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANI  208 (243)
Q Consensus       139 ~l~hp~--iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~Ni  208 (243)
                      .+.|.+  +..+++    ....++||||++|++|.++...        .....++.+++.++.++|.        +|+||
T Consensus        89 ~l~~~~i~v~~~~~----~~~~~lv~e~~~g~~L~~~~~~--------~~~~~~~~~i~~~l~~lh~~gi~H~Dl~p~Ni  156 (198)
T cd05144          89 ALYEEGFPVPKPID----WNRHAVVMEYIDGVELYRVRVL--------EDPEEVLDEILEEIVKAYKHGIIHGDLSEFNI  156 (198)
T ss_pred             HHHHcCCCCCceee----cCCceEEEEEeCCcchhhcccc--------ccHHHHHHHHHHHHHHHHHCCCCcCCCCcccE
Confidence            997774  444443    2456899999999999765421        1234566777777777654        45899


Q ss_pred             EECCCCcEEEeccCCceecCCCC
Q 039406          209 LLDFKFEAKVADFGLAKIASDVN  231 (243)
Q Consensus       209 Ll~~~~~~kl~DFG~a~~~~~~~  231 (243)
                      |++.++.++|+|||++..+..++
T Consensus       157 ll~~~~~~~liDfg~~~~~~~~~  179 (198)
T cd05144         157 LVDDDEKIYIIDWPQMVSTDHPN  179 (198)
T ss_pred             EEcCCCcEEEEECCccccCCCcc
Confidence            99999999999999997766543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>smart00090 RIO RIO-like kinase

Probab=99.54  E-value=2.3e-14  Score=116.40  Aligned_cols=125  Identities=13%  Similarity=0.047  Sum_probs=91.7

Q ss_pred             CCCccceeeecCceEEEEEE-e-cCCch------------------------------------hHHHHHHHHHHHHhcC
Q 039406          100 GFSDANLLRQDGFGYVHRGV-L-PNGKE------------------------------------GEREFQAEVEIISRVH  141 (243)
Q Consensus       100 ~~~~~~~lg~G~~g~V~~~~-~-~~~~~------------------------------------~~~~~~~E~~~l~~l~  141 (243)
                      .|.+.+.||+|+||.||+|+ . ..+..                                    ....+.+|+.+|+++.
T Consensus        29 ~~~i~~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~L~~L~  108 (237)
T smart00090       29 LSAIGGCISTGKEANVYHALDFDGSGKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKINPRKLVRLWAEKEFRNLQRLY  108 (237)
T ss_pred             hHHhCCeeccCcceeEEEEEecCCCCcEEEEEEEEcCcceecchhhhcccchhhccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            47889999999999999998 2 22210                                    0123568999999997


Q ss_pred             CC--ccceEEEEEEeCCeeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc---------CCCcEEE
Q 039406          142 HK--HLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD---------DLANILL  210 (243)
Q Consensus       142 hp--~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~---------~~~NiLl  210 (243)
                      +.  .+.+++++    ...++||||+.+.+|..++....  .+.......++.+++.+|.+||.         +|+|||+
T Consensus       109 ~~~i~~p~~~~~----~~~~lV~E~~~g~~L~~~~~~~~--~~~~~~~~~i~~qi~~~l~~LH~~g~iiH~Dikp~NIli  182 (237)
T smart00090      109 EAGVPVPKPIAW----RRNVLVMEFIGGDGLPAPRLKDV--EPEEEEEFELYDDILEEMRKLYKEGELVHGDLSEYNILV  182 (237)
T ss_pred             hcCCCCCeeeEe----cCceEEEEEecCCcccccccccC--CcchHHHHHHHHHHHHHHHHHHhcCCEEeCCCChhhEEE
Confidence            53  23344432    23589999999988876553222  35556677899999999999875         4689999


Q ss_pred             CCCCcEEEeccCCceecCCCC
Q 039406          211 DFKFEAKVADFGLAKIASDVN  231 (243)
Q Consensus       211 ~~~~~~kl~DFG~a~~~~~~~  231 (243)
                      + ++.++|+|||+|.......
T Consensus       183 ~-~~~i~LiDFg~a~~~~~~~  202 (237)
T smart00090      183 H-DGKVVIIDVSQSVELDHPM  202 (237)
T ss_pred             E-CCCEEEEEChhhhccCCcc
Confidence            9 8899999999999766543

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=99.53  E-value=7.4e-15  Score=126.68  Aligned_cols=135  Identities=21%  Similarity=0.186  Sum_probs=106.4

Q ss_pred             HhCCCCccceeeecCceEEEEEEecC------------CchhHHHHHHHHHHHHhcCC------CccceEEEEEEeCCee
Q 039406           97 ATDGFSDANLLRQDGFGYVHRGVLPN------------GKEGEREFQAEVEIISRVHH------KHLVSLVGYYTAGSQR  158 (243)
Q Consensus        97 ~~~~~~~~~~lg~G~~g~V~~~~~~~------------~~~~~~~~~~E~~~l~~l~h------p~iv~~~~~~~~~~~~  158 (243)
                      .-+.|.+....|+|-|++|.+|.+..            .+...+.-++|+++|++|+.      -|+++|+..|...+++
T Consensus       430 LD~RY~V~~~~GkGvFs~Vvra~D~~r~~~vAiKIIRnNE~M~KtGl~EleiLkKL~~AD~Edk~Hclrl~r~F~hknHL  509 (752)
T KOG0670|consen  430 LDSRYEVQGYTGKGVFSTVVRARDQARGQEVAIKIIRNNEVMHKTGLKELEILKKLNDADPEDKFHCLRLFRHFKHKNHL  509 (752)
T ss_pred             hcceeEEEeccccceeeeeeeccccCCCCeeEEEEeecchHHhhhhhHHHHHHHHhhccCchhhhHHHHHHHHhhhccee
Confidence            44678889999999999999996543            33355667889999999953      4889999999999999


Q ss_pred             EEEEeccCCCCHHHHhccCCC-CCCCHHHHHHHHHHHHHhhhHh------hc--CCCcEEECCC-CcEEEeccCCceecC
Q 039406          159 MLVYEFVLNNTLVFHLHGKGQ-PTMDWPTRIKIALGSAKGLAYL------HD--DLANILLDFK-FEAKVADFGLAKIAS  228 (243)
Q Consensus       159 ~lv~e~~~~g~L~~~l~~~~~-~~l~~~~~~~i~~~i~~~l~~l------H~--~~~NiLl~~~-~~~kl~DFG~a~~~~  228 (243)
                      |||+|-+ ..+|.++++.-+. ..|.+..++.++.|+..||..|      |.  ||+|||+++. ..+||||||.|..+.
T Consensus       510 ClVFE~L-slNLRevLKKyG~nvGL~ikaVRsYaqQLflALklLK~c~vlHaDIKPDNiLVNE~k~iLKLCDfGSA~~~~  588 (752)
T KOG0670|consen  510 CLVFEPL-SLNLREVLKKYGRNVGLHIKAVRSYAQQLFLALKLLKKCGVLHADIKPDNILVNESKNILKLCDFGSASFAS  588 (752)
T ss_pred             EEEehhh-hchHHHHHHHhCcccceeehHHHHHHHHHHHHHHHHHhcCeeecccCccceEeccCcceeeeccCccccccc
Confidence            9999988 5599999986543 2466666666766666666654      77  5699999876 578999999999987


Q ss_pred             CCCc
Q 039406          229 DVNT  232 (243)
Q Consensus       229 ~~~~  232 (243)
                      ++..
T Consensus       589 enei  592 (752)
T KOG0670|consen  589 ENEI  592 (752)
T ss_pred             cccc
Confidence            7653

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=99.51  E-value=2.5e-14  Score=120.37  Aligned_cols=128  Identities=17%  Similarity=0.260  Sum_probs=109.2

Q ss_pred             HHHHhCCCCccceeeecCceEEEEEEecCC---ch-----------hHHHHHHHHHHHHhc-CCCccceEEEEEEeCCee
Q 039406           94 LARATDGFSDANLLRQDGFGYVHRGVLPNG---KE-----------GEREFQAEVEIISRV-HHKHLVSLVGYYTAGSQR  158 (243)
Q Consensus        94 ~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~---~~-----------~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~~  158 (243)
                      +....+.|...++||+|+|+.||++.+...   .+           ...++.+|+++|..+ .+.||+++.+++..++..
T Consensus        31 ~p~~~~~~~~v~kigeGsFssv~~a~~~~~~~~~~~valk~i~~ts~p~ri~~El~~L~~~gG~~ni~~~~~~~rnnd~v  110 (418)
T KOG1167|consen   31 IPFISNAYKVVNKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRTSSPSRILNELEMLYRLGGSDNIIKLNGCFRNNDQV  110 (418)
T ss_pred             hhhhhhhhhhhccccccchhhhhhhhHhhhccccceEeeeecccccCchHHHHHHHHHHHhccchhhhcchhhhccCCee
Confidence            344457789999999999999999987662   11           346789999999999 599999999999999999


Q ss_pred             EEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCC-CcEEEeccCCcee
Q 039406          159 MLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFK-FEAKVADFGLAKI  226 (243)
Q Consensus       159 ~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~-~~~kl~DFG~a~~  226 (243)
                      .+||||++...-.+++..     ++...++.++..++.||.++|.        ||+|+|.+.. +.-.|+|||+|..
T Consensus       111 ~ivlp~~~H~~f~~l~~~-----l~~~~i~~Yl~~ll~Al~~~h~~GIvHRDiKpsNFL~n~~t~rg~LvDFgLA~~  182 (418)
T KOG1167|consen  111 AIVLPYFEHDRFRDLYRS-----LSLAEIRWYLRNLLKALAHLHKNGIVHRDIKPSNFLYNRRTQRGVLVDFGLAQR  182 (418)
T ss_pred             EEEecccCccCHHHHHhc-----CCHHHHHHHHHHHHHHhhhhhccCccccCCCccccccccccCCceEEechhHHH
Confidence            999999999888888753     6788899999999999999865        5799999855 7889999999984

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=99.50  E-value=1.6e-14  Score=117.83  Aligned_cols=126  Identities=21%  Similarity=0.260  Sum_probs=99.9

Q ss_pred             CCCCccceeeecCceEEEEEEecCC---------------chhHHHHHHHHHHHHhcCCCccceEEEEEEeC------Ce
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNG---------------KEGEREFQAEVEIISRVHHKHLVSLVGYYTAG------SQ  157 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~---------------~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~------~~  157 (243)
                      .+|..++.+|.|.- .|..+.+.-.               ....++..+|..+|..++|+||++++.+|.-.      ..
T Consensus        17 ~Ry~nL~p~~~g~~-~v~~a~D~v~~~~v~ikk~~~pf~n~~~akra~rel~l~~~v~~~nii~l~n~ftP~~~l~~~~e   95 (369)
T KOG0665|consen   17 KRYVNLKPIGSGAQ-IVVAAFDQVLGRPVAIKKLSRPFQNQTHAKRAYRELKLMKCVNHKNIISLLNVFTPQKTLEEFQE   95 (369)
T ss_pred             eeeeeecccCCCCc-eEEecchhhccCceehhhhcCccccCccchhhhhhhhhhhhhcccceeeeeeccCccccHHHHHh
Confidence            56777778887776 4544432111               11346678899999999999999999998643      36


Q ss_pred             eEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          158 RMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       158 ~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      +|+|||||.. +|...+..    .++-..+..|+.|+++|++|||+        ||+||++..++.+||.|||+|+....
T Consensus        96 ~y~v~e~m~~-nl~~vi~~----elDH~tis~i~yq~~~~ik~lhs~~IihRdLkPsnivv~~~~~lKi~dfg~ar~e~~  170 (369)
T KOG0665|consen   96 VYLVMELMDA-NLCQVILM----ELDHETISYILYQMLCGIKHLHSAGIIHRDLKPSNIVVNSDCTLKILDFGLARTEDT  170 (369)
T ss_pred             HHHHHHhhhh-HHHHHHHH----hcchHHHHHHHHHHHHHHHHHHhcceeecccCcccceecchhheeeccchhhcccCc
Confidence            8999999955 89888863    26778899999999999999976        67999999999999999999997654


Q ss_pred             C
Q 039406          230 V  230 (243)
Q Consensus       230 ~  230 (243)
                      .
T Consensus       171 ~  171 (369)
T KOG0665|consen  171 D  171 (369)
T ss_pred             c
Confidence            3

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=99.47  E-value=1.5e-12  Score=108.28  Aligned_cols=131  Identities=27%  Similarity=0.343  Sum_probs=109.0

Q ss_pred             CCccceeeecCceEEEEEEecCCc-------------hhHHHHHHHHHHHHhcCCC-ccceEEEEEEeCCeeEEEEeccC
Q 039406          101 FSDANLLRQDGFGYVHRGVLPNGK-------------EGEREFQAEVEIISRVHHK-HLVSLVGYYTAGSQRMLVYEFVL  166 (243)
Q Consensus       101 ~~~~~~lg~G~~g~V~~~~~~~~~-------------~~~~~~~~E~~~l~~l~hp-~iv~~~~~~~~~~~~~lv~e~~~  166 (243)
                      |...+.||.|+|+.||++......             .....+.+|+.++..+.|+ +|+++++.+......+++++++.
T Consensus         2 ~~~~~~l~~g~~~~v~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   81 (384)
T COG0515           2 YRILRKLGEGSFGEVYLARDRKLVALKVLAKKLESKSKEVERFLREIQILASLNHPPNIVKLYDFFQDEGSLYLVMEYVD   81 (384)
T ss_pred             ceeEEeecCCCCeEEEEEEeccEEEEEeechhhccchhHHHHHHHHHHHHHHccCCcceeeEEEEEecCCEEEEEEecCC
Confidence            667789999999999999766210             1366789999999999988 79999999988888899999999


Q ss_pred             CCCHHHHhccCCC-CCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCC-cEEEeccCCceecCCCC
Q 039406          167 NNTLVFHLHGKGQ-PTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKF-EAKVADFGLAKIASDVN  231 (243)
Q Consensus       167 ~g~L~~~l~~~~~-~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~-~~kl~DFG~a~~~~~~~  231 (243)
                      +++|.+++..... ..+.......++.+++.++.|+|.        ||+|||++..+ .++++|||+++.+....
T Consensus        82 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~H~~~~~hrd~kp~nil~~~~~~~~~l~dfg~~~~~~~~~  156 (384)
T COG0515          82 GGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLHSKGIIHRDIKPENILLDRDGRVVKLIDFGLAKLLPDPG  156 (384)
T ss_pred             CCcHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeeecCCCCeEEEeccCcceecCCCC
Confidence            9999977765431 148888999999999999999986        56899999988 79999999998765443

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=99.42  E-value=1.2e-12  Score=97.85  Aligned_cols=117  Identities=20%  Similarity=0.105  Sum_probs=91.5

Q ss_pred             ccceeeecCceEEEEEEecCCc-------h--hHHHHHHHHHHHHhcCC--CccceEEEEEEeCCeeEEEEeccCCCCHH
Q 039406          103 DANLLRQDGFGYVHRGVLPNGK-------E--GEREFQAEVEIISRVHH--KHLVSLVGYYTAGSQRMLVYEFVLNNTLV  171 (243)
Q Consensus       103 ~~~~lg~G~~g~V~~~~~~~~~-------~--~~~~~~~E~~~l~~l~h--p~iv~~~~~~~~~~~~~lv~e~~~~g~L~  171 (243)
                      +.+.||+|.++.||++......       .  ....+.+|+.+++.++|  .++.+++.++...+..+++|||+.++.+.
T Consensus         2 ~~~~i~~g~~~~v~~~~~~~~~~~iK~~~~~~~~~~~~~e~~~~~~l~~~~~~~p~~~~~~~~~~~~~~v~e~~~g~~~~   81 (155)
T cd05120           2 SIKLLKGGLTNRVYLLGTKDEDYVLKINPSREKGADREREVAILQLLARKGLPVPKVLASGESDGWSYLLMEWIEGETLD   81 (155)
T ss_pred             cceecccccccceEEEEecCCeEEEEecCCCCchhHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCccEEEEEecCCeecc
Confidence            3578999999999999864321       1  13478899999999976  58999999888888999999999887775


Q ss_pred             HHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc-----------CCCcEEECCCCcEEEeccCCceecC
Q 039406          172 FHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD-----------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       172 ~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~-----------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      .+         +......++.+++.+|.+||.           ++.|||++..+.++++|||+++...
T Consensus        82 ~~---------~~~~~~~~~~~~~~~l~~lh~~~~~~i~H~Dl~~~Nil~~~~~~~~l~Df~~~~~~~  140 (155)
T cd05120          82 EV---------SEEEKEDIAEQLAELLAKLHQLPLLVLCHGDLHPGNILVDDGKILGIIDWEYAGYGP  140 (155)
T ss_pred             cC---------CHHHHHHHHHHHHHHHHHHhCCCceEEEecCCCcceEEEECCcEEEEEecccccCCC
Confidence            43         334555667777777777664           3589999998999999999998654

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=99.38  E-value=5.7e-12  Score=102.54  Aligned_cols=94  Identities=18%  Similarity=0.148  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHHhcCCCcc--ceEEEEEEeCC-e---eEEEEeccCC-CCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhH
Q 039406          128 REFQAEVEIISRVHHKHL--VSLVGYYTAGS-Q---RMLVYEFVLN-NTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAY  200 (243)
Q Consensus       128 ~~~~~E~~~l~~l~hp~i--v~~~~~~~~~~-~---~~lv~e~~~~-g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~  200 (243)
                      .++.+|+.++.+|+|.+|  ++.+++..... .   .++||||++| .+|.+++...   .++..    .+.+++.+|.+
T Consensus        85 ~r~~rE~~ll~~L~~~gi~vP~pl~~~~~~~~~~~~~~lV~e~l~G~~~L~~~l~~~---~l~~~----~~~~i~~~l~~  157 (239)
T PRK01723         85 TRAFAEFRLLAQLYEAGLPVPRPIAARVVRHGLFYRADILIERIEGARDLVALLQEA---PLSEE----QWQAIGQLIAR  157 (239)
T ss_pred             hHHHHHHHHHHHHHhCCCCCceeEeeeeeecCcceeeeEEEEecCCCCCHHHHHhcC---CCCHH----HHHHHHHHHHH
Confidence            457889999999998875  66776644322 2   3599999997 6999888542   24443    35677888888


Q ss_pred             hhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          201 LHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       201 lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      ||.        +|.|||++.++.++|+|||.++...
T Consensus       158 lH~~GI~HrDlkp~NILv~~~~~v~LIDfg~~~~~~  193 (239)
T PRK01723        158 FHDAGVYHADLNAHNILLDPDGKFWLIDFDRGELRT  193 (239)
T ss_pred             HHHCCCCCCCCCchhEEEcCCCCEEEEECCCcccCC
Confidence            876        4689999999999999999998764

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=99.37  E-value=1.8e-11  Score=102.86  Aligned_cols=139  Identities=19%  Similarity=0.215  Sum_probs=112.7

Q ss_pred             cHHHHHHHhCCCCccceeeecCceEEEEEEecCCch-------------------hHHHHHHHHHHHHhcCCCccceEEE
Q 039406           90 TYEELARATDGFSDANLLRQDGFGYVHRGVLPNGKE-------------------GEREFQAEVEIISRVHHKHLVSLVG  150 (243)
Q Consensus        90 ~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~-------------------~~~~~~~E~~~l~~l~hp~iv~~~~  150 (243)
                      ...++.....++....++-+|+||.||+|.+++.+.                   ....++.|..+|..+.|+|+..+.+
T Consensus       275 r~~~l~v~r~Rv~l~~llqEGtFGri~~gI~~eEdt~n~~q~v~vKTvk~~AS~iQv~~~L~es~lly~~sH~nll~V~~  354 (563)
T KOG1024|consen  275 RLQELTVQRCRVRLSCLLQEGTFGRIYRGIWREEDTYNDCQEVLVKTVKQHASQIQVNLLLQESMLLYGASHPNLLSVLG  354 (563)
T ss_pred             hHHhhhhhhhheechhhhhcCchhheeeeeecccCCcchHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCcCCCccceeE
Confidence            345666666788889999999999999997765421                   3455778888899999999999999


Q ss_pred             EEEe-CCeeEEEEeccCCCCHHHHhcc------CCCCCCCHHHHHHHHHHHHHhhhHhhc------CC--CcEEECCCCc
Q 039406          151 YYTA-GSQRMLVYEFVLNNTLVFHLHG------KGQPTMDWPTRIKIALGSAKGLAYLHD------DL--ANILLDFKFE  215 (243)
Q Consensus       151 ~~~~-~~~~~lv~e~~~~g~L~~~l~~------~~~~~l~~~~~~~i~~~i~~~l~~lH~------~~--~NiLl~~~~~  215 (243)
                      ++.. ....++++.++.-|+|..++..      ...+.++-.+....+.|++.|++|||+      |+  -|++||+..+
T Consensus       355 V~ie~~~~P~V~y~~~~~gNLK~FL~~Cr~~~~~~aqtvtt~qlV~masQla~am~hlh~~~ViHkDiAaRNCvIdd~Lq  434 (563)
T KOG1024|consen  355 VSIEDYATPFVLYPATGVGNLKSFLQICRGDDPSYAQTVTTIQLVLMASQLAMAMEHLHNHGVIHKDIAARNCVIDDQLQ  434 (563)
T ss_pred             EEeeccCcceEEEeccCcchHHHHHHHhccCCCccccchhHHHHHHHHHHHHHHHHHHHhcCcccchhhhhcceehhhee
Confidence            8764 4567888999988999999862      223456777888999999999999977      55  5999999999


Q ss_pred             EEEeccCCceecC
Q 039406          216 AKVADFGLAKIAS  228 (243)
Q Consensus       216 ~kl~DFG~a~~~~  228 (243)
                      +||+|=.++|-+.
T Consensus       435 VkltDsaLSRDLF  447 (563)
T KOG1024|consen  435 VKLTDSALSRDLF  447 (563)
T ss_pred             EEeccchhccccC
Confidence            9999999998653

>cd05119 RIO RIO kinase family, catalytic domain

Probab=99.31  E-value=1.4e-11  Score=96.24  Aligned_cols=117  Identities=14%  Similarity=0.085  Sum_probs=77.8

Q ss_pred             cceeeecCceEEEEEEecCCch--------------hHHH----------------------HHHHHHHHHhcCCCc--c
Q 039406          104 ANLLRQDGFGYVHRGVLPNGKE--------------GERE----------------------FQAEVEIISRVHHKH--L  145 (243)
Q Consensus       104 ~~~lg~G~~g~V~~~~~~~~~~--------------~~~~----------------------~~~E~~~l~~l~hp~--i  145 (243)
                      .+.||+|+||.||+|....+..              ....                      ...|...+.++.+..  +
T Consensus         2 ~~~lg~G~~g~Vy~a~~~~~~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~   81 (187)
T cd05119           2 GGPIGTGKEADVYLALDGDGEPVAVKIYRTGRTSFKKRKRYRTGDYRFGRKKSNWRYLSRLWAEKEFRNLKRLYEAGVPV   81 (187)
T ss_pred             CcccccccceeEEEEECCCCCEEEEEEEecCccchhhhhhhhHHHHHhccCCcchhhhhhHHHHHHHHHHHHHHHcCCCC
Confidence            4689999999999998663321              0011                      135666666664433  4


Q ss_pred             ceEEEEEEeCCeeEEEEeccCCCCHHH-HhccCCCCCCCHHHHHHHHHHHHHhhhHhhc---------CCCcEEECCCCc
Q 039406          146 VSLVGYYTAGSQRMLVYEFVLNNTLVF-HLHGKGQPTMDWPTRIKIALGSAKGLAYLHD---------DLANILLDFKFE  215 (243)
Q Consensus       146 v~~~~~~~~~~~~~lv~e~~~~g~L~~-~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~---------~~~NiLl~~~~~  215 (243)
                      .+++++    ...++||||+.++.+.. .+....   .. .....++.+++.++.++|.         +++|||++ ++.
T Consensus        82 ~~~~~~----~~~~lv~e~~~g~~~~~~~l~~~~---~~-~~~~~~~~~~~~~l~~lh~~~~ivH~Dl~p~Nili~-~~~  152 (187)
T cd05119          82 PKPIDL----NRHVLVMEFIGGDGIPAPRLKDVR---LL-EDPEELYDQILELMRKLYREAGLVHGDLSEYNILVD-DGK  152 (187)
T ss_pred             CceEec----CCCEEEEEEeCCCCccChhhhhhh---hc-ccHHHHHHHHHHHHHHHhhccCcCcCCCChhhEEEE-CCc
Confidence            444443    34689999999854321 111110   11 4567788888888888876         45899999 999


Q ss_pred             EEEeccCCceecCC
Q 039406          216 AKVADFGLAKIASD  229 (243)
Q Consensus       216 ~kl~DFG~a~~~~~  229 (243)
                      ++|+|||.+.....
T Consensus       153 ~~liDfg~a~~~~~  166 (187)
T cd05119         153 VYIIDVPQAVEIDH  166 (187)
T ss_pred             EEEEECcccccccC
Confidence            99999999987655

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.21  E-value=9.2e-12  Score=113.35  Aligned_cols=125  Identities=18%  Similarity=0.186  Sum_probs=96.2

Q ss_pred             CccceeeecCceEEEEEEecCCch-------------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEE
Q 039406          102 SDANLLRQDGFGYVHRGVLPNGKE-------------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVY  162 (243)
Q Consensus       102 ~~~~~lg~G~~g~V~~~~~~~~~~-------------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  162 (243)
                      ...+++|.|++|.|+.+......+                   ....+..|+.+-..+.|+|++..+..+.+....+-+|
T Consensus       321 ~~~~~~g~ga~g~~~~~~~~~~~~~~~~~~~r~~~~~~~s~~~~~~~i~sE~~i~~~l~h~~~~e~l~~~~~~~~~~~~m  400 (601)
T KOG0590|consen  321 KPGRVLGSGAYGSVRIAKRRSDLKSFPEKEFRVRVKPTESERKYNYNITSEFCIGSSLSHPNIIETLDIVQEIDGILQSM  400 (601)
T ss_pred             CccceeeecccCceEEEEecCCCccchhhhhhcccCCcccHHHHhhhhhhheeecccccCCchhhhHHHHhhcccchhhh
Confidence            356789999999666664222110                   1112445666677889999988877766666556669


Q ss_pred             eccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          163 EFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       163 e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      |||++ +|+.++...+  .+....+..++.|++.||.|+|.        |++|+|++.+|.+||+|||.+..+.-
T Consensus       401 E~~~~-Dlf~~~~~~~--~~~~~e~~c~fKqL~~Gv~y~h~~GiahrdlK~enll~~~~g~lki~Dfg~~~vf~~  472 (601)
T KOG0590|consen  401 EYCPY-DLFSLVMSNG--KLTPLEADCFFKQLLRGVKYLHSMGLAHRDLKLENLLVTENGILKIIDFGAASVFRY  472 (601)
T ss_pred             hcccH-HHHHHHhccc--ccchhhhhHHHHHHHHHHHHHHhcCceeccCccccEEEecCCceEEeecCcceeecc
Confidence            99999 9999987653  37788899999999999999976        56999999999999999999988743

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=99.20  E-value=1.4e-11  Score=110.29  Aligned_cols=130  Identities=18%  Similarity=0.217  Sum_probs=85.3

Q ss_pred             CCCCccceeeecCceEEEEEEecC-Cch----------------------------------------------hHH---
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPN-GKE----------------------------------------------GER---  128 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~-~~~----------------------------------------------~~~---  128 (243)
                      .+|.. +.||.|++|.||+|+++. +++                                              ..+   
T Consensus       120 ~~fd~-~PlasaSiaQVh~A~l~~~G~~VAVKV~rP~i~~~I~~Dl~~l~~~a~~l~~~~~~~~~l~~~~~v~e~~~~l~  198 (537)
T PRK04750        120 DDFDI-KPLASASIAQVHFARLKDNGREVVVKVLRPDILPVIDADLALMYRLARWVERLLPDGRRLKPREVVAEFEKTLH  198 (537)
T ss_pred             HhcCh-hhhcCCCccEEEEEEECCCCCEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHH
Confidence            45666 789999999999999876 321                                              001   


Q ss_pred             ---HHHHHHHHHHhcC----CCccceEEEEEE-eCCeeEEEEeccCCCCHHHHh--ccCCC--CCCCHHHHHHHHHHHHH
Q 039406          129 ---EFQAEVEIISRVH----HKHLVSLVGYYT-AGSQRMLVYEFVLNNTLVFHL--HGKGQ--PTMDWPTRIKIALGSAK  196 (243)
Q Consensus       129 ---~~~~E~~~l~~l~----hp~iv~~~~~~~-~~~~~~lv~e~~~~g~L~~~l--~~~~~--~~l~~~~~~~i~~~i~~  196 (243)
                         .+.+|+..+.+++    +.+.+.+-.++. .....+||||||+|+.|.++.  ...+.  ..+....+..++.|++.
T Consensus       199 ~ElD~~~Ea~N~~~~~~~f~~~~~v~VP~v~~d~st~~VLvmE~i~G~~l~d~~~l~~~g~d~~~la~~~v~~~~~Qif~  278 (537)
T PRK04750        199 DELDLMREAANASQLRRNFEDSDMLYVPEVYWDYCSETVMVMERMYGIPVSDVAALRAAGTDMKLLAERGVEVFFTQVFR  278 (537)
T ss_pred             HhhCHHHHHHHHHHHHHHccCCCCeecceeecccCCCceEEEeeecCccHHhHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence               1233444444442    333344333332 244567999999999997742  22221  12444455666777764


Q ss_pred             hhhHhhcCC--CcEEECCCC----cEEEeccCCceecCCC
Q 039406          197 GLAYLHDDL--ANILLDFKF----EAKVADFGLAKIASDV  230 (243)
Q Consensus       197 ~l~~lH~~~--~NiLl~~~~----~~kl~DFG~a~~~~~~  230 (243)
                       -.+.|+|+  .||+++.++    .++++|||++..+.+.
T Consensus       279 -~GffHaDpHPGNIlv~~~g~~~~~i~llDFGivg~l~~~  317 (537)
T PRK04750        279 -DGFFHADMHPGNIFVSYDPPENPRYIALDFGIVGSLNKE  317 (537)
T ss_pred             -CCeeeCCCChHHeEEecCCCCCCeEEEEecceEEECCHH
Confidence             67889976  799999888    9999999999987653

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.19  E-value=1.9e-11  Score=114.48  Aligned_cols=128  Identities=19%  Similarity=0.178  Sum_probs=94.4

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCchhHH---------HHHHHHHHHHhcC---CCccceEEEEEEeCCeeEEEEecc
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGKEGER---------EFQAEVEIISRVH---HKHLVSLVGYYTAGSQRMLVYEFV  165 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~---------~~~~E~~~l~~l~---hp~iv~~~~~~~~~~~~~lv~e~~  165 (243)
                      ...|.+.+.||+|+||.||+|...+++...-         .|.-=..++.+|+   -+.|+.++.++...+.-+||+||.
T Consensus       697 ~~~~~I~~e~G~g~y~~vy~a~~~~~~~~alK~e~P~~~WEfYI~~q~~~RLk~~~~~~~~~~~~a~~~~~~S~lv~ey~  776 (974)
T KOG1166|consen  697 GEKFCISKEIGEGSYGSVYVATHSNGKLVALKVEKPPNPWEFYICLQVMERLKPQMLPSIMHISSAHVFQNASVLVSEYS  776 (974)
T ss_pred             ceeEEEEeeeccccceEEEEeecCCCcEEEEEeecCCCceeeeehHHHHHhhchhhhcchHHHHHHHccCCcceeeeecc
Confidence            4567788999999999999998777432100         0000112233333   345666777777778889999999


Q ss_pred             CCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECC-------CCcEEEeccCCceec
Q 039406          166 LNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDF-------KFEAKVADFGLAKIA  227 (243)
Q Consensus       166 ~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~-------~~~~kl~DFG~a~~~  227 (243)
                      +.|+|.+++...+  .++|..++.|..|+|.-|+.||.        ||+|+||..       ..-++|+|||.+--+
T Consensus       777 ~~Gtlld~~N~~~--~m~e~lv~~~~~qml~ive~lH~~~IIHgDiKPDNfll~~~~~~~~~~~~l~lIDfG~siDm  851 (974)
T KOG1166|consen  777 PYGTLLDLINTNK--VMDEYLVMFFSCQMLRIVEHLHAMGIIHGDIKPDNFLLRREICADSDSKGLYLIDFGRSIDM  851 (974)
T ss_pred             ccccHHHhhccCC--CCCchhhhHHHHHHHHHHHHHHhcceecccCCcceeEeecccCCCCcccceEEEecccceee
Confidence            9999999997443  58999999999999999999987        679999932       245999999988643

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.15  E-value=8e-12  Score=110.37  Aligned_cols=125  Identities=26%  Similarity=0.279  Sum_probs=100.5

Q ss_pred             eeeecCceEEEEEEecCCch------------------hHHHHHHHHHHHHhcC-CCccceEEEEEEeCCeeEEEEeccC
Q 039406          106 LLRQDGFGYVHRGVLPNGKE------------------GEREFQAEVEIISRVH-HKHLVSLVGYYTAGSQRMLVYEFVL  166 (243)
Q Consensus       106 ~lg~G~~g~V~~~~~~~~~~------------------~~~~~~~E~~~l~~l~-hp~iv~~~~~~~~~~~~~lv~e~~~  166 (243)
                      .+|+|.||.|+.++-..+..                  .......|..++..++ |+.+|++...+..+...+++++|..
T Consensus         1 vlg~g~~gkvfLvrk~~g~da~~~yamkvl~k~t~~~~~~~~t~~er~il~~~~~~~f~v~lhyafqt~~kl~l~ld~~r   80 (612)
T KOG0603|consen    1 VLGQGSYGKVFLVRKAGGADAGHLYAMKVLKKATLKVRDRTHTKQERIILAFVHNTPFLVKLHYAFQTDGKLYLILDFLR   80 (612)
T ss_pred             CCCcCCCcchHHHHHhccccccchhhhhcccccccccccccccccHHHHHhhccCCCceeeeeeeeccccchhHhhhhcc
Confidence            36888888888764222110                  1113455778888886 9999999999999999999999999


Q ss_pred             CCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCc
Q 039406          167 NNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNT  232 (243)
Q Consensus       167 ~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~  232 (243)
                      ||+|...+....  .+.+.....+...++.+++++|.        |++||+++.+|++|+.|||+++...+...
T Consensus        81 gg~lft~l~~~~--~f~~~~~~~~~aelaLald~lh~l~iiyrd~k~enilld~~Ghi~~tdfglske~v~~~~  152 (612)
T KOG0603|consen   81 GGDLFTRLSKEV--MFDELDVAFYLAELALALDHLHKLGIAYRDYKLENVLLLLEGHIKLTDFGLSKEAVKEKI  152 (612)
T ss_pred             cchhhhccccCC--chHHHHHHHHHHHHHHHHhhcchhHHHHhcccccceeecccCccccCCchhhhHhHhhhh
Confidence            999998886554  47788888888999999999886        67999999999999999999998765443

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=99.12  E-value=2.5e-10  Score=100.67  Aligned_cols=99  Identities=20%  Similarity=0.184  Sum_probs=60.5

Q ss_pred             HHHHHHHHHhcC----CCccceEEEEE-EeCCeeEEEEeccCCCCHHHHhccCCCCCCCHHHHH----HHHHHHHHhhhH
Q 039406          130 FQAEVEIISRVH----HKHLVSLVGYY-TAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRI----KIALGSAKGLAY  200 (243)
Q Consensus       130 ~~~E~~~l~~l~----hp~iv~~~~~~-~~~~~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~----~i~~~i~~~l~~  200 (243)
                      |.+|...+.+++    +.+-+.+-.++ ......+|||||++|++|.++...... ......+.    ..+...++.-.+
T Consensus       200 f~~Ea~n~~~~~~~~~~~~~v~vP~v~~~~~~~~vLvmE~i~G~~L~~~~~~~~~-~~~~~~ia~~~~~~~l~ql~~~g~  278 (437)
T TIGR01982       200 LRREAANASELGENFKNDPGVYVPEVYWDRTSERVLTMEWIDGIPLSDIAALDEA-GLDRKALAENLARSFLNQVLRDGF  278 (437)
T ss_pred             HHHHHHHHHHHHHhcCCCCCEEeCCEehhhcCCceEEEEeECCcccccHHHHHhc-CCCHHHHHHHHHHHHHHHHHhCCc
Confidence            445665555552    33333332222 223457899999999999887643211 12222111    112223345567


Q ss_pred             hhcCC--CcEEECCCCcEEEeccCCceecCC
Q 039406          201 LHDDL--ANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       201 lH~~~--~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      +|+|+  .||+++.++.++|+|||++..+..
T Consensus       279 ~H~D~hPgNilv~~~g~i~liDfG~~~~l~~  309 (437)
T TIGR01982       279 FHADLHPGNIFVLKDGKIIALDFGIVGRLSE  309 (437)
T ss_pred             eeCCCCcccEEECCCCcEEEEeCCCeeECCH
Confidence            78865  899999999999999999998764

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms]

Probab=99.10  E-value=1.5e-10  Score=101.75  Aligned_cols=91  Identities=25%  Similarity=0.494  Sum_probs=82.6

Q ss_pred             HHhcCCCccceEEEEEEeCCeeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhcCC---------Cc
Q 039406          137 ISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHDDL---------AN  207 (243)
Q Consensus       137 l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~~---------~N  207 (243)
                      |+.+.|.|+.+++|.+.+....++|.+||..|+|.|.+.... ..+++.....++++++.||.|||..+         .|
T Consensus         1 l~~l~h~n~~~f~g~~~~~~~~~~i~~~c~rGsl~D~i~~~~-~~~d~~F~~s~~rdi~~Gl~ylh~s~i~~hg~l~s~n   79 (484)
T KOG1023|consen    1 LRQLDHDNLNKFIGASVDGPEMIVIWEYCSRGSLLDILSNED-IKLDYFFILSFIRDISKGLAYLHNSPIGYHGALKSSN   79 (484)
T ss_pred             CcccchhhhhhheeeEecCCceEEEEeeecCccHHhHHhccc-cCccHHHHHHHHHHHHHHHHHHhcCcceeeeeecccc
Confidence            467899999999999999999999999999999999998643 35899999999999999999999843         79


Q ss_pred             EEECCCCcEEEeccCCceecC
Q 039406          208 ILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       208 iLl~~~~~~kl~DFG~a~~~~  228 (243)
                      +++|..+.+||+|||+..+..
T Consensus        80 Clvd~~w~lklt~~Gl~~~~~  100 (484)
T KOG1023|consen   80 CLVDSRWVLKLTDFGLNSLLE  100 (484)
T ss_pred             ceeeeeEEEEechhhhccccc
Confidence            999999999999999998874

>KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms]

Probab=99.10  E-value=7.5e-11  Score=99.52  Aligned_cols=82  Identities=26%  Similarity=0.229  Sum_probs=65.4

Q ss_pred             CCCccceEEEEEEe---------------------------CCeeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHH
Q 039406          141 HHKHLVSLVGYYTA---------------------------GSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALG  193 (243)
Q Consensus       141 ~hp~iv~~~~~~~~---------------------------~~~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~  193 (243)
                      +|||||++..+|.+                           ...+|+||.-... +|.+++..+   ..+....+.++.|
T Consensus       274 ~HPNIvri~~aF~dsv~~lPda~~~YPdalp~R~~p~g~g~~~tlylvMkrY~~-tLr~yl~~~---~~s~r~~~~~laQ  349 (598)
T KOG4158|consen  274 KHPNIVRIQTAFIDSVKVLPDAIERYPDALPARWYPSGAGEPKTLYLVMKRYRQ-TLREYLWTR---HRSYRTGRVILAQ  349 (598)
T ss_pred             CCCCEEeehhhhhhhhccCCchhhhCcccccceecccccCCCceEEEehhcchh-hHHHHHhcC---CCchHHHHHHHHH
Confidence            69999999998854                           2358999998855 999988654   3666778889999


Q ss_pred             HHHhhhHhhc--------CCCcEEE--CCCC--cEEEeccCCcee
Q 039406          194 SAKGLAYLHD--------DLANILL--DFKF--EAKVADFGLAKI  226 (243)
Q Consensus       194 i~~~l~~lH~--------~~~NiLl--~~~~--~~kl~DFG~a~~  226 (243)
                      +++|+.|||+        |.+||||  |+++  .+.|+|||+|-.
T Consensus       350 lLEav~hL~~hgvAhRDlKSDNiL~ElddD~~P~LVvaDFGCcLA  394 (598)
T KOG4158|consen  350 LLEAVTHLHKHGVAHRDLKSDNILLELDDDEIPQLVVADFGCCLA  394 (598)
T ss_pred             HHHHHHHHHHccchhhcccccceEEEecCCCCcEEEEcccceeee
Confidence            9999999965        4489998  4443  689999999864

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.02  E-value=1e-10  Score=94.27  Aligned_cols=118  Identities=19%  Similarity=0.360  Sum_probs=99.6

Q ss_pred             CccceeeecCceEEEEEEecCCch-------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccCCC
Q 039406          102 SDANLLRQDGFGYVHRGVLPNGKE-------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNN  168 (243)
Q Consensus       102 ~~~~~lg~G~~g~V~~~~~~~~~~-------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~g  168 (243)
                      ....+|.+...|+.|+|++.....             ..+.|..|.-.|+-+.||||+.+++.|....++.++..||+.|
T Consensus       193 nl~tkl~e~hsgelwrgrwqgndivakil~vr~~t~risrdfneefp~lrifshpnilpvlgacnsppnlv~isq~mp~g  272 (448)
T KOG0195|consen  193 NLITKLAESHSGELWRGRWQGNDIVAKILNVREVTARISRDFNEEFPALRIFSHPNILPVLGACNSPPNLVIISQYMPFG  272 (448)
T ss_pred             hhhhhhccCCCcccccccccCcchhhhhhhhhhcchhhcchhhhhCcceeeecCCchhhhhhhccCCCCceEeeeeccch
Confidence            334567888889999998876542             3356778888899899999999999999999999999999999


Q ss_pred             CHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc----------CCCcEEECCCCcEEEe
Q 039406          169 TLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD----------DLANILLDFKFEAKVA  219 (243)
Q Consensus       169 ~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~----------~~~NiLl~~~~~~kl~  219 (243)
                      +|+..+++.....++..++..++++++.|+.|||.          ....++||++.+.+|.
T Consensus       273 slynvlhe~t~vvvd~sqav~faldiargmaflhslep~ipr~~lns~hvmidedltaris  333 (448)
T KOG0195|consen  273 SLYNVLHEQTSVVVDHSQAVRFALDIARGMAFLHSLEPMIPRFYLNSKHVMIDEDLTARIS  333 (448)
T ss_pred             HHHHHHhcCccEEEecchHHHHHHHHHhhHHHHhhcchhhhhhhcccceEEecchhhhhee
Confidence            99999998766567788999999999999999998          2268999999876654

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.02  E-value=1.9e-10  Score=108.85  Aligned_cols=82  Identities=11%  Similarity=0.031  Sum_probs=61.0

Q ss_pred             HhcCC-CccceEEEEE-------EeCCeeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc------
Q 039406          138 SRVHH-KHLVSLVGYY-------TAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD------  203 (243)
Q Consensus       138 ~~l~h-p~iv~~~~~~-------~~~~~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~------  203 (243)
                      +.++| .||.+++++|       .....++++|||+ +++|.+++.... ..+++..++.++.||+.||.|||.      
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~al~~lH~~gIvHr  104 (793)
T PLN00181         27 KSLSHIDYVRSLLGSHKEGNLDGLDDDSIVRALECE-DVSLRQWLDNPD-RSVDAFECFHVFRQIVEIVNAAHSQGIVVH  104 (793)
T ss_pred             chhhHHHHHHHhhcccCCccccccccchhhhhhccC-CccHHHHHhccc-ccccHHHHHHHHHHHHHHHHHHHhCCeeec
Confidence            34555 5777888877       2334678889988 559999997543 358999999999999999999987      


Q ss_pred             --CCCcEEECCCCcEEEecc
Q 039406          204 --DLANILLDFKFEAKVADF  221 (243)
Q Consensus       204 --~~~NiLl~~~~~~kl~DF  221 (243)
                        ||+||||+..+.+|++||
T Consensus       105 DlKP~NiLl~~~~~~k~~d~  124 (793)
T PLN00181        105 NVRPSCFVMSSFNHVSFIES  124 (793)
T ss_pred             cCCchhEEEcccCcEEEeec
Confidence              679999965444333333

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.99  E-value=4.1e-09  Score=80.87  Aligned_cols=101  Identities=20%  Similarity=0.286  Sum_probs=73.9

Q ss_pred             hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhcCC
Q 039406          126 GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHDDL  205 (243)
Q Consensus       126 ~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~~  205 (243)
                      ...+..+|..+|.+++--.|.--+=++.+.+...|+|||++|..|.+.+...   ..+....+......+|--.++|.|+
T Consensus        42 rr~Rt~~Earil~~a~~~GV~~P~v~dvD~~~~~I~me~I~G~~lkd~l~~~---~~~~~r~vG~~vg~lH~~givHGDL  118 (204)
T COG3642          42 RRERTRREARILAKAREAGVPVPIVYDVDPDNGLIVMEYIEGELLKDALEEA---RPDLLREVGRLVGKLHKAGIVHGDL  118 (204)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCEEEEEEeCChhHHHHHHhc---chHHHHHHHHHHHHHHhcCeecCCC
Confidence            3456788999999886555544444556777788999999999998888654   1333444444555677777888888


Q ss_pred             --CcEEECCCCcEEEeccCCceecCCC
Q 039406          206 --ANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       206 --~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                        +||++...+ +.++||||+..-...
T Consensus       119 TtsNiIl~~~~-i~~IDfGLg~~s~~~  144 (204)
T COG3642         119 TTSNIILSGGR-IYFIDFGLGEFSDEV  144 (204)
T ss_pred             ccceEEEeCCc-EEEEECCcccccccH
Confidence              799997554 999999999875443

>cd05151 ChoK Choline Kinase (ChoK)

Probab=98.82  E-value=1.2e-08  Score=78.23  Aligned_cols=110  Identities=23%  Similarity=0.117  Sum_probs=70.1

Q ss_pred             ceeeecCceEEEEEEecCCc----------hhHHHHHHHHHHHHhcCCCcc-ceEEEEEEeCCeeEEEEeccCCCCHHHH
Q 039406          105 NLLRQDGFGYVHRGVLPNGK----------EGEREFQAEVEIISRVHHKHL-VSLVGYYTAGSQRMLVYEFVLNNTLVFH  173 (243)
Q Consensus       105 ~~lg~G~~g~V~~~~~~~~~----------~~~~~~~~E~~~l~~l~hp~i-v~~~~~~~~~~~~~lv~e~~~~g~L~~~  173 (243)
                      +.|+.|.++.||++......          .....+.+|+++++.+.+.++ .+++.+..  ...++||||++|.++.+.
T Consensus         4 ~~l~~G~~~~vy~~~~~~~~~~lK~~~~~~~~~~~~~~E~~~l~~l~~~~~~P~~~~~~~--~~~~lv~e~i~G~~l~~~   81 (170)
T cd05151           4 SPLKGGMTNKNYRVEVANKKYVVRIPGNGTELLINRENEAENSKLAAEAGIGPKLYYFDP--ETGVLITEFIEGSELLTE   81 (170)
T ss_pred             eecCCcccCceEEEEECCeEEEEEeCCCCcccccCHHHHHHHHHHHHHhCCCCceEEEeC--CCCeEEEEecCCCccccc
Confidence            56778888888887543211          112346789999998865444 45555433  345799999999887643


Q ss_pred             hccCCCCCCCHHHHHHHHHHHHHhhhH-----------hhcCC--CcEEECCCCcEEEeccCCceec
Q 039406          174 LHGKGQPTMDWPTRIKIALGSAKGLAY-----------LHDDL--ANILLDFKFEAKVADFGLAKIA  227 (243)
Q Consensus       174 l~~~~~~~l~~~~~~~i~~~i~~~l~~-----------lH~~~--~NiLl~~~~~~kl~DFG~a~~~  227 (243)
                      .  .    ...    .++.+++..|..           +|+|+  .|||++ ++.++|+|||.+..-
T Consensus        82 ~--~----~~~----~~~~~l~~~l~~LH~~~~~~~~~~HgD~~~~Nil~~-~~~~~liDf~~a~~~  137 (170)
T cd05151          82 D--F----SDP----ENLEKIAKLLKKLHSSPLPDLVPCHNDLLPGNFLLD-DGRLWLIDWEYAGMN  137 (170)
T ss_pred             c--c----cCH----HHHHHHHHHHHHHhCCCCCCceeecCCCCcCcEEEE-CCeEEEEecccccCC
Confidence            1  0    111    122333333333           56654  799999 678999999998864

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]

Probab=98.81  E-value=7.7e-08  Score=73.84  Aligned_cols=126  Identities=17%  Similarity=0.204  Sum_probs=85.3

Q ss_pred             ccceeeecCceEEEEEEecCCc-------------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEe
Q 039406          103 DANLLRQDGFGYVHRGVLPNGK-------------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYE  163 (243)
Q Consensus       103 ~~~~lg~G~~g~V~~~~~~~~~-------------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e  163 (243)
                      .+..|.+|+-+.|+++.+....                   -..++..+|+++|.+++--.|.--.-+|.+.+.-.|+||
T Consensus        11 ~l~likQGAEArv~~~~~~Ge~~iIK~Rf~K~YRHP~LD~kLtr~Rt~~Ear~l~k~~~~GI~~P~l~~~D~~~~~i~ME   90 (229)
T KOG3087|consen   11 SLELIKQGAEARVPRGSFSGEAAIIKERFSKRYRHPALDQKLTRKRTKQEARLLAKCRALGIPAPRLIFIDTYGGQIYME   90 (229)
T ss_pred             cceeeeccceeeEeeeccCCceeEEeecccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEecCCCeEEEE
Confidence            5678999999999988755432                   145677889999999875555554455667777789999


Q ss_pred             ccCC-CCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHh------hcCC--CcEEECCCC---cEEEeccCCceecC
Q 039406          164 FVLN-NTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL------HDDL--ANILLDFKF---EAKVADFGLAKIAS  228 (243)
Q Consensus       164 ~~~~-g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~l------H~~~--~NiLl~~~~---~~kl~DFG~a~~~~  228 (243)
                      |++| -++.+++...............++..|-..+.-|      |.|+  +|||+..++   .+.|+|||++..-.
T Consensus        91 ~~~g~~~vk~~i~~~~~~~~~d~~~~~~~~~iG~~igklH~ndiiHGDLTTSNill~~~~~~~~~~lIdfgls~~s~  167 (229)
T KOG3087|consen   91 FIDGASTVKDFILSTMEDESEDEGLAELARRIGELIGKLHDNDIIHGDLTTSNILLRSDGNQITPILIDFGLSSVSR  167 (229)
T ss_pred             eccchhHHHHHHHHHccCcccchhHHHHHHHHHHHHHHhhhCCeecccccccceEEecCCCcCceEEEeecchhccc
Confidence            9977 4777777654322222222245555555555544      5566  799996554   46899999987643

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=98.79  E-value=3.2e-08  Score=88.69  Aligned_cols=114  Identities=19%  Similarity=0.113  Sum_probs=92.0

Q ss_pred             eeeecCceEEEEEEecCCchhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccCCCCHHHHhccCCCCCCCHH
Q 039406          106 LLRQDGFGYVHRGVLPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWP  185 (243)
Q Consensus       106 ~lg~G~~g~V~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~l~~~  185 (243)
                      +.-.|.+-.||.....++ .......+-++.|+.++||||+++++.++.++.+|||+|-+  --|..++++.     ...
T Consensus        33 ~k~~~~~vsVF~~~~~~~-~~~~~~~~A~k~lKtlRHP~Il~yL~t~e~~~~~ylvTErV--~Pl~~~lk~l-----~~~  104 (690)
T KOG1243|consen   33 RKADGGPVSVFVYKRSNG-EVTELAKRAVKRLKTLRHPNILSYLDTTEEEGTLYLVTERV--RPLETVLKEL-----GKE  104 (690)
T ss_pred             eeccCCceEEEEEeCCCc-hhhHHHHHHHHHhhhccCchhhhhhhhhcccCceEEEeecc--ccHHHHHHHh-----HHH
Confidence            344566777888777776 55666777889999999999999999999999999999988  4666666543     345


Q ss_pred             HHHHHHHHHHHhhhHhhcCC---------CcEEECCCCcEEEeccCCceec
Q 039406          186 TRIKIALGSAKGLAYLHDDL---------ANILLDFKFEAKVADFGLAKIA  227 (243)
Q Consensus       186 ~~~~i~~~i~~~l~~lH~~~---------~NiLl~~~~~~kl~DFG~a~~~  227 (243)
                      .....+.||+.||.|||.|.         +-|+++..|+-||++|-++...
T Consensus       105 ~v~~Gl~qIl~AL~FL~~d~~lvHgNv~~~SVfVn~~GeWkLggle~v~~~  155 (690)
T KOG1243|consen  105 EVCLGLFQILAALSFLNDDCNLVHGNVCKDSVFVNESGEWKLGGLELVSKA  155 (690)
T ss_pred             HHHHHHHHHHHHHHHHhccCCeeeccEeeeeEEEcCCCcEEEeeeEEEecc
Confidence            66777899999999998754         5678899999999999887654

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=98.78  E-value=1.6e-08  Score=77.94  Aligned_cols=59  Identities=22%  Similarity=0.222  Sum_probs=52.4

Q ss_pred             CCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--CCCcEEECCCCcEEEeccCCceecCC
Q 039406          168 NTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       168 g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      |+|.+++..++. .+++..++.++.|++.||.|||.  |++|||++.++.+|+  ||+++....
T Consensus         1 GsL~~~l~~~~~-~l~~~~~~~i~~qi~~~L~~lH~~~kp~Nil~~~~~~~~~--fG~~~~~~~   61 (176)
T smart00750        1 VSLADILEVRGR-PLNEEEIWAVCLQCLRALRELHRQAKSGNILLTWDGLLKL--DGSVAFKTP   61 (176)
T ss_pred             CcHHHHHHHhCC-CCCHHHHHHHHHHHHHHHHHHHhcCCcccEeEcCccceee--ccceEeecc
Confidence            689999975443 59999999999999999999999  789999999999999  999988654

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]

Probab=98.71  E-value=4.1e-08  Score=79.76  Aligned_cols=121  Identities=16%  Similarity=0.120  Sum_probs=84.1

Q ss_pred             CCccceeeecCceEEEEEEecCCch----------------------------------hHHHHHHHHHHHHhcCCC--c
Q 039406          101 FSDANLLRQDGFGYVHRGVLPNGKE----------------------------------GEREFQAEVEIISRVHHK--H  144 (243)
Q Consensus       101 ~~~~~~lg~G~~g~V~~~~~~~~~~----------------------------------~~~~~~~E~~~l~~l~hp--~  144 (243)
                      ..+...||-|.-+.||.|...++.+                                  .+....+|.++|.+|...  .
T Consensus        93 e~iG~~IGvGKEsdVY~~~~~~g~~~~vKfHR~GrtsFrkvk~~R~y~~~~~h~sWl~~sRl~A~rEf~~L~~L~~~G~~  172 (304)
T COG0478          93 EAIGTKIGVGKESDVYVAIDPKGRKVAVKFHRLGRTSFRKVKRNRDYLADKEHGSWLYVSRLAAEREFEALQRLYPEGVK  172 (304)
T ss_pred             HhhccccccCccceEEEEECCCCCEEEEEEeecCchhhhhhcchhhhhccccCcchhhhHHHHHHHHHHHHHHhhhcCCC
Confidence            3456789999999999997654321                                  234567899999999655  6


Q ss_pred             cceEEEEEEeCCeeEEEEeccCCCCHHHHhccCCCCCCCHHHHH----HHHHHHHHhhhHhhcCCC--cEEECCCCcEEE
Q 039406          145 LVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRI----KIALGSAKGLAYLHDDLA--NILLDFKFEAKV  218 (243)
Q Consensus       145 iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~----~i~~~i~~~l~~lH~~~~--NiLl~~~~~~kl  218 (243)
                      +.+.+++    +.-.+||||++|-.|...-..    ......++    ..+..+. -..|+|.|.+  |||++++|.+.+
T Consensus       173 VP~P~~~----nRHaVvMe~ieG~eL~~~r~~----~en~~~il~~il~~~~~~~-~~GiVHGDlSefNIlV~~dg~~~v  243 (304)
T COG0478         173 VPKPIAW----NRHAVVMEYIEGVELYRLRLD----VENPDEILDKILEEVRKAY-RRGIVHGDLSEFNILVTEDGDIVV  243 (304)
T ss_pred             CCCcccc----ccceeeeehcccceeecccCc----ccCHHHHHHHHHHHHHHHH-HcCccccCCchheEEEecCCCEEE
Confidence            7777665    667899999999777654311    12222222    2222222 5667899985  999999999999


Q ss_pred             eccCCceecCCC
Q 039406          219 ADFGLAKIASDV  230 (243)
Q Consensus       219 ~DFG~a~~~~~~  230 (243)
                      +||=-+.....+
T Consensus       244 IDwPQ~v~~~hp  255 (304)
T COG0478         244 IDWPQAVPISHP  255 (304)
T ss_pred             EeCcccccCCCC
Confidence            999877665443

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=98.71  E-value=1.2e-07  Score=75.71  Aligned_cols=70  Identities=11%  Similarity=0.065  Sum_probs=50.9

Q ss_pred             ceeeecCceEEEEEEecCCch-------------hHHHHHHHHHHHHhcCC--CccceEEEEEEeC---CeeEEEEeccC
Q 039406          105 NLLRQDGFGYVHRGVLPNGKE-------------GEREFQAEVEIISRVHH--KHLVSLVGYYTAG---SQRMLVYEFVL  166 (243)
Q Consensus       105 ~~lg~G~~g~V~~~~~~~~~~-------------~~~~~~~E~~~l~~l~h--p~iv~~~~~~~~~---~~~~lv~e~~~  166 (243)
                      +.|+.|.++.||++...++..             ....+.+|+++++.+++  .++.+++.+....   +..++||||++
T Consensus         4 ~~l~~G~~n~~~~v~~~~g~~~ilK~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~vp~~~~~~~~~~~~~~~~~v~e~i~   83 (223)
T cd05154           4 RQLSGGQSNLTYLLTAGGGRRLVLRRPPPGALLPSAHDVAREYRVLRALAGTGVPVPKVLALCEDPSVLGTPFYVMERVD   83 (223)
T ss_pred             eecCCCccceEEEEEecCCcceEEEeCCCcccCcccccHHHHHHHHHHhhCCCCCCCCEEEECCCCCccCCceEEEEEeC
Confidence            568888889999887654211             24567899999999975  3457777776653   36789999999


Q ss_pred             CCCHHHHh
Q 039406          167 NNTLVFHL  174 (243)
Q Consensus       167 ~g~L~~~l  174 (243)
                      |.++.+.+
T Consensus        84 G~~l~~~~   91 (223)
T cd05154          84 GRVLRDRL   91 (223)
T ss_pred             CEecCCCC
Confidence            98776544

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=98.65  E-value=5.4e-07  Score=70.87  Aligned_cols=92  Identities=15%  Similarity=0.152  Sum_probs=60.9

Q ss_pred             HHHHHHHHhcCC--CccceEEEEEEeCCeeEEEEeccCCCCHHH-HhccCCCCCCCHHHHHHHHHHHHHhhhHh------
Q 039406          131 QAEVEIISRVHH--KHLVSLVGYYTAGSQRMLVYEFVLNNTLVF-HLHGKGQPTMDWPTRIKIALGSAKGLAYL------  201 (243)
Q Consensus       131 ~~E~~~l~~l~h--p~iv~~~~~~~~~~~~~lv~e~~~~g~L~~-~l~~~~~~~l~~~~~~~i~~~i~~~l~~l------  201 (243)
                      .+|+..|+++..  -++.+.+++    ..-+|||||+.+..+.. .+...   .++......+..+++..|..|      
T Consensus        74 ~kE~r~L~rl~~~Gv~vP~pi~~----~~~~lvME~Ig~~~~~~~~Lkd~---~~~~~~~~~i~~~i~~~l~~l~H~~gl  146 (197)
T cd05146          74 EKEMHNLKRMQKAGIPCPEVVVL----KKHVLVMSFIGDDQVPAPKLKDA---KLNDEEMKNAYYQVLSMMKQLYKECNL  146 (197)
T ss_pred             HHHHHHHHHHHHcCCCCCeEEEe----cCCEEEEEEcCCCCccchhhhcc---ccCHHHHHHHHHHHHHHHHHHHHhCCe
Confidence            489999999853  455666654    45689999997654422 22211   244344455556666666554      


Q ss_pred             -hcCC--CcEEECCCCcEEEeccCCceecCCC
Q 039406          202 -HDDL--ANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       202 -H~~~--~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                       |.|+  .|||++ ++.+.|+|||.|......
T Consensus       147 VHGDLs~~NIL~~-~~~v~iIDF~qav~~~hp  177 (197)
T cd05146         147 VHADLSEYNMLWH-DGKVWFIDVSQSVEPTHP  177 (197)
T ss_pred             ecCCCCHHHEEEE-CCcEEEEECCCceeCCCC
Confidence             5566  599997 578999999999877544

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=98.57  E-value=9.4e-09  Score=93.85  Aligned_cols=129  Identities=19%  Similarity=0.282  Sum_probs=101.4

Q ss_pred             CCCccceeeecCceEEEEEEecCC----------------chhHHHHHHHHHHHHhcC-CCccceEEEEEEeCCeeEEEE
Q 039406          100 GFSDANLLRQDGFGYVHRGVLPNG----------------KEGEREFQAEVEIISRVH-HKHLVSLVGYYTAGSQRMLVY  162 (243)
Q Consensus       100 ~~~~~~~lg~G~~g~V~~~~~~~~----------------~~~~~~~~~E~~~l~~l~-hp~iv~~~~~~~~~~~~~lv~  162 (243)
                      .|.+.+.||+|+|+.|-.......                ....+....|..+-+.+. |.|++++++.....+..++++
T Consensus        21 ~~~~~~~ig~gs~~~~~~~~~~~~~~~~~a~~~~s~~~~~~~~~~~i~~e~~~~~~~s~h~n~~~~~~~~~~~~~~~~~~  100 (601)
T KOG0590|consen   21 QYKLSRSIGKGSFSSSALASNSRDPESSSATKPISIPPKSEDSSEHIDTETDIQKKLSKHSNTVHMIEPSSSPRSYLLSL  100 (601)
T ss_pred             cccccccccccccchhhhhhhcCCCcceeeccCCCCCCCccchhhhcCccccccccccccccccccCCccCCCccccccc
Confidence            455666788888887766543221                112344455777777776 999999999999999999999


Q ss_pred             eccCCCCHHHHh-ccCCCCCCCHHHHHHHHHHHHHhhhHhh-c--------CCCcEEECCCC-cEEEeccCCceecCC
Q 039406          163 EFVLNNTLVFHL-HGKGQPTMDWPTRIKIALGSAKGLAYLH-D--------DLANILLDFKF-EAKVADFGLAKIASD  229 (243)
Q Consensus       163 e~~~~g~L~~~l-~~~~~~~l~~~~~~~i~~~i~~~l~~lH-~--------~~~NiLl~~~~-~~kl~DFG~a~~~~~  229 (243)
                      +|..++++.+.+ .... ...+...+-.++.|+..++.|+| .        +|+|.+++..+ .+|+.|||+|..+..
T Consensus       101 ~~s~g~~~f~~i~~~~~-~~~~~~~~~~~~~ql~s~l~~~H~~~~~~h~~ikP~n~~l~~s~~~l~~~df~~At~~~~  177 (601)
T KOG0590|consen  101 SYSDGGSLFSKISHPDS-TGTSSSSASRYLPQLNSGLSYLHPENGVTHRDIKPSNSLLDESGSALKIADFGLATAYRN  177 (601)
T ss_pred             CcccccccccccccCCc-cCCCCcchhhhhhhhccCccccCcccccccCCCCCccchhccCCCcccCCCchhhccccc
Confidence            999999999888 4332 13556677889999999999999 3        57899999999 999999999998866

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.49  E-value=7.7e-07  Score=78.88  Aligned_cols=131  Identities=18%  Similarity=0.109  Sum_probs=105.3

Q ss_pred             CCCCccceeee--cCceEEEEEEe--cCCc---------------hhHHHHHHHHHHHHhcC-CCccceEEEEEEeCCee
Q 039406           99 DGFSDANLLRQ--DGFGYVHRGVL--PNGK---------------EGEREFQAEVEIISRVH-HKHLVSLVGYYTAGSQR  158 (243)
Q Consensus        99 ~~~~~~~~lg~--G~~g~V~~~~~--~~~~---------------~~~~~~~~E~~~l~~l~-hp~iv~~~~~~~~~~~~  158 (243)
                      ..|...+.+|.  |.+|.||.+..  ..+.               .....-.+|+...++++ |+|.++.+..++..+..
T Consensus       114 ~~~~~~~~~g~~~g~~~s~~~~~~~~~~s~~~~a~k~s~~p~s~p~~~~~k~~~~~s~~~i~~~~~~v~~~~~~e~~~~l  193 (524)
T KOG0601|consen  114 QRFPISSRTGSLPGSKGSVFKSRCTNSESPHKFAVKKSKIPFSPPLDSKRKLREFLSHHKIDSHENPVRDSPAWEGSGIL  193 (524)
T ss_pred             hhcccccccccCCCCCceeecccCCcccCCcccccccccCCCCCccccccccchhhcccccCccccccccCcccccCCcc
Confidence            35677789999  99999999977  3221               12334467787778885 99999999999999999


Q ss_pred             EEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHH----hhhHhhc--------CCCcEEECCC-CcEEEeccCCce
Q 039406          159 MLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAK----GLAYLHD--------DLANILLDFK-FEAKVADFGLAK  225 (243)
Q Consensus       159 ~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~----~l~~lH~--------~~~NiLl~~~-~~~kl~DFG~a~  225 (243)
                      |+-+|+|. .+|..+.+.... .++...+..++.+...    ||.++|.        +++||++..+ ...+++|||+..
T Consensus       194 fiqtE~~~-~sl~~~~~~~~~-~~p~~~l~~~~~~~~~~~~~al~~~hs~~~~~~~~kp~~i~~~~~~~s~~~~df~~v~  271 (524)
T KOG0601|consen  194 FIQTELCG-ESLQSYCHTPCN-FLPDNLLWNSLRDWLSRDVTALSHLHSNNIVHDDLKPANIFTTSDWTSCKLTDFGLVS  271 (524)
T ss_pred             eeeecccc-chhHHhhhcccc-cCCchhhhhHHhhhhhcccccccccCCCcccccccchhheecccccceeecCCcceeE
Confidence            99999995 688888875543 3677777888888888    9999987        4589999988 889999999999


Q ss_pred             ecCCCC
Q 039406          226 IASDVN  231 (243)
Q Consensus       226 ~~~~~~  231 (243)
                      .+.+.+
T Consensus       272 ~i~~~~  277 (524)
T KOG0601|consen  272 KISDGN  277 (524)
T ss_pred             EccCCc
Confidence            887655

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=98.44  E-value=3.6e-07  Score=81.73  Aligned_cols=124  Identities=19%  Similarity=0.242  Sum_probs=83.4

Q ss_pred             ceeeecCceEEEEEEecCCch----------------------------------------------------hHHHHHH
Q 039406          105 NLLRQDGFGYVHRGVLPNGKE----------------------------------------------------GEREFQA  132 (243)
Q Consensus       105 ~~lg~G~~g~V~~~~~~~~~~----------------------------------------------------~~~~~~~  132 (243)
                      .-|+.++-|.||+|+++.+++                                                    ..-.+.+
T Consensus       131 ~PiAsASIaQVH~A~L~sG~~VAVKVqrPgi~~~i~~DL~il~~~a~~~~~~~~~~~~l~~~~vv~e~~~~l~~ElDy~~  210 (517)
T COG0661         131 EPIASASIAQVHRAVLKSGEEVAVKVQRPGIRERIEADLKLLRRLARLIKRLPPGGRRLDLVEVVDEFEKRLREELDYRR  210 (517)
T ss_pred             CchhhhhHhhheeEEecCCCEEEEEecCCChHHHHHHHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHHHHHhCHHH
Confidence            578999999999999886532                                                    1122455


Q ss_pred             HHHHHHhcC-----CCccceEEE-EEEeCCeeEEEEeccCCCCHHHHh--ccCCCC--CCCHHHHHHHHHHHHHhhhHhh
Q 039406          133 EVEIISRVH-----HKHLVSLVG-YYTAGSQRMLVYEFVLNNTLVFHL--HGKGQP--TMDWPTRIKIALGSAKGLAYLH  202 (243)
Q Consensus       133 E~~~l~~l~-----hp~iv~~~~-~~~~~~~~~lv~e~~~~g~L~~~l--~~~~~~--~l~~~~~~~i~~~i~~~l~~lH  202 (243)
                      |...+.+++     .++| ++=. +++..+.-.|+|||++|..+.+..  ...+..  .+...-...++.|++. -.|.|
T Consensus       211 EA~n~~~~~~nf~~~~~v-~VP~V~we~t~~~VLtmE~i~Gi~i~d~~~l~~~g~d~k~ia~~~~~~f~~q~~~-dgffH  288 (517)
T COG0661         211 EAANAERFRENFKDDPDV-YVPKVYWEYTTRRVLTMEWIDGIKISDIAALKSAGIDRKELAELLVRAFLRQLLR-DGFFH  288 (517)
T ss_pred             HHHHHHHHHHHcCCCCCe-EeceeehhccCCcEEEEEeeCCEecccHHHHHhcCCCHHHHHHHHHHHHHHHHHh-cCccc
Confidence            666665552     2333 3322 334456678999999998888774  332211  1223334455666665 78899


Q ss_pred             cCC--CcEEECCCCcEEEeccCCceecCCC
Q 039406          203 DDL--ANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       203 ~~~--~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      .||  .||+++.+|++.+.|||+...+.+.
T Consensus       289 aDpHpGNi~v~~~g~i~~lDfGi~g~l~~~  318 (517)
T COG0661         289 ADPHPGNILVRSDGRIVLLDFGIVGRLDPK  318 (517)
T ss_pred             cCCCccceEEecCCcEEEEcCcceecCCHH
Confidence            987  7999999999999999999887653

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=98.38  E-value=6.8e-07  Score=74.13  Aligned_cols=129  Identities=18%  Similarity=0.229  Sum_probs=76.6

Q ss_pred             CCCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhcC----------CCccceEEEEEE
Q 039406          100 GFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRVH----------HKHLVSLVGYYT  153 (243)
Q Consensus       100 ~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l~----------hp~iv~~~~~~~  153 (243)
                      .+...+.||.|+++.||.+.+..+.+                ..+.+.+|.-....+.          |-.++..++...
T Consensus        13 ~l~~~~~i~~g~~~~v~~v~d~~t~~~~avkvf~~~~~~~~~~~~~~~~e~l~~~~~~~~~~p~~a~~~~r~l~P~d~~~   92 (288)
T PF14531_consen   13 TLVRGRIIGKGGFSIVFEVTDVETGEEFAVKVFLLPADASANEYEQLKEEQLAITLFPGVKNPKEAYRHLRFLVPLDLLR   92 (288)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEEESSTTHTTHHHHHHHHHHGGGGSTT--SHHHHHHHH-B---SEEEE
T ss_pred             EEEEccccccCCceEEEEEEEccCCceEEEEEEecccccchHHHHHHHHHHHHhhhhccCCCHHHHHHhceEEeeeEEEE
Confidence            45667899999999999998877532                4556666654333321          223333333322


Q ss_pred             ---------eCC--------eeEEEEeccCCCCHHHHhcc---CCCC--CCCHHHHHHHHHHHHHhhhHhhc--------
Q 039406          154 ---------AGS--------QRMLVYEFVLNNTLVFHLHG---KGQP--TMDWPTRIKIALGSAKGLAYLHD--------  203 (243)
Q Consensus       154 ---------~~~--------~~~lv~e~~~~g~L~~~l~~---~~~~--~l~~~~~~~i~~~i~~~l~~lH~--------  203 (243)
                               ...        +.+++|+-+. ++|.+++..   ....  .+.....+.+..|+++.+++||+        
T Consensus        93 i~~~~~~~~~~~~~~~~~v~n~~~l~P~~~-~dL~~~~~~l~~~~~~~~~l~~~arl~lT~Q~I~lvA~Lh~~GlVHgdi  171 (288)
T PF14531_consen   93 IPGKPPFFERGPGQSIYWVLNRFLLMPRAQ-GDLQDLVEALFSRAQTHSPLAFAARLSLTVQMIRLVANLHSYGLVHGDI  171 (288)
T ss_dssp             ETTS-SEEEECETTEEEEEESEEEEEE--S-EEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHTTEEEST-
T ss_pred             EcCCCcceecCCCCccceeehhhhccchhh-hcHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHhhcceEeccc
Confidence                     111        2467888874 488877542   1111  12233445566888988899876        


Q ss_pred             CCCcEEECCCCcEEEeccCCceecCC
Q 039406          204 DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       204 ~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      +++|+|++.+|.++|+||+.....++
T Consensus       172 ~~~nfll~~~G~v~Lg~F~~~~r~g~  197 (288)
T PF14531_consen  172 KPENFLLDQDGGVFLGDFSSLVRAGT  197 (288)
T ss_dssp             SGGGEEE-TTS-EEE--GGGEEETTE
T ss_pred             ceeeEEEcCCCCEEEcChHHHeecCc
Confidence            46899999999999999998887654

>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.35  E-value=5.9e-07  Score=70.24  Aligned_cols=99  Identities=18%  Similarity=0.135  Sum_probs=58.2

Q ss_pred             hHHHHHHHHHHHHhcCCC--ccceEEEEEEeCCeeEEEEeccC--CCCHHHHhccCCCCCCCHH----HHHHHHHHHHHh
Q 039406          126 GEREFQAEVEIISRVHHK--HLVSLVGYYTAGSQRMLVYEFVL--NNTLVFHLHGKGQPTMDWP----TRIKIALGSAKG  197 (243)
Q Consensus       126 ~~~~~~~E~~~l~~l~hp--~iv~~~~~~~~~~~~~lv~e~~~--~g~L~~~l~~~~~~~l~~~----~~~~i~~~i~~~  197 (243)
                      ......+|.+.|.++..-  ++.+++.+.    .-+|||||++  |..+..+...... .....    .++..+..+++.
T Consensus        51 ~~~~~~~E~~~L~~l~~~Gv~vP~p~~~~----~~~ivME~I~~~G~~~~~l~~~~~~-~~~~~~~~~~il~~~~~~~~~  125 (188)
T PF01163_consen   51 IREWAKKEFRNLKRLYEAGVPVPKPYDYN----RNVIVMEYIGEDGVPLPRLKDVDLS-PEEPKELLEEILEEIIKMLHK  125 (188)
T ss_dssp             HHHHHHHHHHHHHHCCCTT-SS--EEEEE----TTEEEEE--EETTEEGGCHHHCGGG-GSTHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHCCccCCcEEEEe----CCEEEEEecCCCccchhhHHhcccc-chhHHHHHHHHHHHHHHHHHh
Confidence            356678899999999765  456666552    3479999998  6455443322100 01111    222223344555


Q ss_pred             hhHhhcCC--CcEEECCCCcEEEeccCCceecCCC
Q 039406          198 LAYLHDDL--ANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       198 l~~lH~~~--~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      ...+|.|+  .|||++++ .+.|+|||.|.....+
T Consensus       126 ~givHGDLs~~NIlv~~~-~~~iIDf~qav~~~~p  159 (188)
T PF01163_consen  126 AGIVHGDLSEYNILVDDG-KVYIIDFGQAVDSSHP  159 (188)
T ss_dssp             TTEEESS-STTSEEEETT-CEEE--GTTEEETTST
T ss_pred             cCceecCCChhhEEeecc-eEEEEecCcceecCCc
Confidence            66778887  59999877 9999999999877644

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.

>COG2112 Predicted Ser/Thr protein kinase [Signal transduction mechanisms]

Probab=98.34  E-value=3.5e-06  Score=64.45  Aligned_cols=117  Identities=17%  Similarity=0.200  Sum_probs=79.5

Q ss_pred             CccceeeecCceEEEEEEecCCc---------hhHHHHHHHHHHHHhcCCCcc-ceEEEEEEeCCeeEEEEeccCCCCHH
Q 039406          102 SDANLLRQDGFGYVHRGVLPNGK---------EGEREFQAEVEIISRVHHKHL-VSLVGYYTAGSQRMLVYEFVLNNTLV  171 (243)
Q Consensus       102 ~~~~~lg~G~~g~V~~~~~~~~~---------~~~~~~~~E~~~l~~l~hp~i-v~~~~~~~~~~~~~lv~e~~~~g~L~  171 (243)
                      ...+.|++|.+|.||+|.+....         ..+..+..|+++|..+.-.++ .++|.+..+    ++.|||+.|-.|.
T Consensus        25 ~v~~~L~KG~~s~Vyl~~~~~~~~a~Kvrr~ds~r~~l~kEakiLeil~g~~~~p~vy~yg~~----~i~me~i~G~~L~  100 (201)
T COG2112          25 RVEKELAKGTTSVVYLGEWRGGEVALKVRRRDSPRRNLEKEAKILEILAGEGVTPEVYFYGED----FIRMEYIDGRPLG  100 (201)
T ss_pred             hhhhhhhcccccEEEEeeccCceEEEEEecCCcchhhHHHHHHHHHHhhhcCCCceEEEechh----hhhhhhhcCcchh
Confidence            45678999999999999876543         356789999999999976655 456665433    4569999998998


Q ss_pred             HHhccCCCCCCCHHHHHHHHH--HHHHhhhHhhcCC----CcEEECCCCcEEEeccCCceecC
Q 039406          172 FHLHGKGQPTMDWPTRIKIAL--GSAKGLAYLHDDL----ANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       172 ~~l~~~~~~~l~~~~~~~i~~--~i~~~l~~lH~~~----~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      ++....     +-...+.++-  -++..+...|..+    .||++. ++.+.|+||--|++-.
T Consensus       101 ~~~~~~-----~rk~l~~vlE~a~~LD~~GI~H~El~~~~k~vlv~-~~~~~iIDFd~At~k~  157 (201)
T COG2112         101 KLEIGG-----DRKHLLRVLEKAYKLDRLGIEHGELSRPWKNVLVN-DRDVYIIDFDSATFKK  157 (201)
T ss_pred             hhhhcc-----cHHHHHHHHHHHHHHHHhccchhhhcCCceeEEec-CCcEEEEEccchhhcc
Confidence            766431     2222333222  2344445557754    466665 4499999999998543

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.28  E-value=6.7e-08  Score=90.85  Aligned_cols=123  Identities=20%  Similarity=0.149  Sum_probs=92.9

Q ss_pred             CCCccceeeecCceEEEEEEecCCc-----------h-hHHHHH---HHHHHHHhcCCCccceEEEEEEeCCeeEEEEec
Q 039406          100 GFSDANLLRQDGFGYVHRGVLPNGK-----------E-GEREFQ---AEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEF  164 (243)
Q Consensus       100 ~~~~~~~lg~G~~g~V~~~~~~~~~-----------~-~~~~~~---~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  164 (243)
                      +|...+.||.+.|=+|.+|++.++.           . ....|.   +|++ ..-+++||.+.+.-+.+.+...|||-+|
T Consensus        24 e~~~~~~LGstRFlKv~r~k~~eG~vVvKVFvk~~p~~sL~~~~qrL~~ik-~~l~~~pn~lPfqk~~~t~kAAylvRqy  102 (1431)
T KOG1240|consen   24 ECHYVENLGSTRFLKVARAKDREGLVVVKVFVKQDPTISLRPFKQRLEEIK-FALMKAPNCLPFQKVLVTDKAAYLVRQY  102 (1431)
T ss_pred             ceeeecccCchhhhhhhhccCCCceEEEEEEeccCCCCCchHHHHHHHHHH-HHhhcCCcccchHHHHHhhHHHHHHHHH
Confidence            4556677888777666665544432           2 233333   3444 4556899999998888888889999999


Q ss_pred             cCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCcee
Q 039406          165 VLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKI  226 (243)
Q Consensus       165 ~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~  226 (243)
                      ... +|.|.+.-+.  -+...+.+-|+.|++.||.-||+        |.+||||+.-+.+.|+||..-+.
T Consensus       103 vkh-nLyDRlSTRP--FL~~iEKkWiaFQLL~al~qcH~~gVcHGDIKsENILiTSWNW~~LtDFAsFKP  169 (1431)
T KOG1240|consen  103 VKH-NLYDRLSTRP--FLVLIEKKWIAFQLLKALSQCHKLGVCHGDIKSENILITSWNWLYLTDFASFKP  169 (1431)
T ss_pred             Hhh-hhhhhhccch--HHHHHHHHHHHHHHHHHHHHHHHcCccccccccceEEEeeechhhhhcccccCC
Confidence            966 9999997554  46777888899999999999876        44899999999999999987764

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=98.24  E-value=1.6e-05  Score=65.81  Aligned_cols=98  Identities=17%  Similarity=0.155  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHhcCCCcc--ceEEEEEEe-----CCeeEEEEeccCCC-CHHHHhccCCCCCCCHHHHHHHHHHHHHhhhH
Q 039406          129 EFQAEVEIISRVHHKHL--VSLVGYYTA-----GSQRMLVYEFVLNN-TLVFHLHGKGQPTMDWPTRIKIALGSAKGLAY  200 (243)
Q Consensus       129 ~~~~E~~~l~~l~hp~i--v~~~~~~~~-----~~~~~lv~e~~~~g-~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~  200 (243)
                      .+.+|...+.+|..-+|  ..++.+++.     ....+||||++++. +|.+++...............++.+++..+.-
T Consensus        74 ~a~rE~~~l~~L~~~GIptP~pVa~~e~~~~~~~~~s~LVte~l~~~~sL~~~~~~~~~~~~~~~~~~~ll~~la~~i~~  153 (268)
T PRK15123         74 GADREWRAIHRLHEVGVDTMTGVAFGERGSNPATRTSFIITEDLAPTISLEDYCADWATNPPDPRLKRMLIKRVATMVRD  153 (268)
T ss_pred             HHHHHHHHHHHHHHcCCCCCCeeEEEEecCCCccceeEEEEeeCCCCccHHHHHHhhcccCCCHHHHHHHHHHHHHHHHH
Confidence            37789998888843333  444555543     23578999999885 79888753222234555666777788777777


Q ss_pred             hhc------C--CCcEEECC-------CCcEEEeccCCcee
Q 039406          201 LHD------D--LANILLDF-------KFEAKVADFGLAKI  226 (243)
Q Consensus       201 lH~------~--~~NiLl~~-------~~~~kl~DFG~a~~  226 (243)
                      ||.      |  +.|||++.       +..+.|+||+.++.
T Consensus       154 LH~~Gi~HgDL~~~NiLl~~~~~~~~~~~~~~LIDl~r~~~  194 (268)
T PRK15123        154 MHAAGINHRDCYICHFLLHLPFPGREEDLKLSVIDLHRAQI  194 (268)
T ss_pred             HHHCcCccCCCChhhEEEeccccCCCCCceEEEEECCcccc
Confidence            765      4  47999975       46899999998865

>KOG3741 consensus Poly(A) ribonuclease subunit [RNA processing and modification]

Probab=98.17  E-value=7.4e-06  Score=72.05  Aligned_cols=99  Identities=17%  Similarity=0.213  Sum_probs=78.9

Q ss_pred             HHHHHHhcCCCccceEEEEEE----eCCeeEEEEeccCC-CCHHHHhccC-------------CCCCCCHHHHHHHHHHH
Q 039406          133 EVEIISRVHHKHLVSLVGYYT----AGSQRMLVYEFVLN-NTLVFHLHGK-------------GQPTMDWPTRIKIALGS  194 (243)
Q Consensus       133 E~~~l~~l~hp~iv~~~~~~~----~~~~~~lv~e~~~~-g~L~~~l~~~-------------~~~~l~~~~~~~i~~~i  194 (243)
                      -++.++++.|.|||.+.++|.    .+..+++|++|.++ ++|.++.-..             ......+..++.++.|+
T Consensus       323 lve~wkkl~h~NvV~frevf~t~tF~D~SlvlvYDYyP~s~TL~d~~F~~~~~t~~~n~~~~~~~~~~~e~~lW~y~~QL  402 (655)
T KOG3741|consen  323 LVEAWKKLCHTNVVPFREVFLTYTFGDLSLVLVYDYYPSSPTLYDLYFANPPFTKRTNSFYPSQNLKAPEEVLWSYISQL  402 (655)
T ss_pred             HHHHHHHhccCceeehhhhhhhhccCcceEEEEEecCCCCchHHHHHccCCccccccccccccCCCCchHHHHHHHHHHH
Confidence            467899999999999999887    34569999999976 5777654221             12236788999999999


Q ss_pred             HHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCC
Q 039406          195 AKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVN  231 (243)
Q Consensus       195 ~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~  231 (243)
                      ..||.++|.        ++.+||++.+.+++|..-|+...+.++.
T Consensus       403 taaL~sIHssGLAck~L~~~kIlv~G~~RIriS~C~i~Dvl~~d~  447 (655)
T KOG3741|consen  403 TAALYSIHSSGLACKTLDLKKILVTGKMRIRISGCGIMDVLQEDP  447 (655)
T ss_pred             HHHHHHHHhcCceeecccHhHeEeeCcceEEEecccceeeecCCC
Confidence            999999998        5689999999899999888877765443

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.14  E-value=1.5e-06  Score=77.00  Aligned_cols=127  Identities=18%  Similarity=0.190  Sum_probs=97.4

Q ss_pred             hCCCCccceeeecCceEEEEEEecC-Cch---------------hHHHHHHHHHHHHhc-CCCccceEEEEEEeCCeeEE
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPN-GKE---------------GEREFQAEVEIISRV-HHKHLVSLVGYYTAGSQRML  160 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~-~~~---------------~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~~~l  160 (243)
                      +.+|..+..||.|.|+.|+.+..+. +..               ....-..|+-+...+ .|.+++.++..|......|+
T Consensus       264 ~~df~~v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~~~l~~~~~di~sl~ev~l~~~l~~~~~~~g~~~~W~~~r~~~i  343 (524)
T KOG0601|consen  264 LTDFGLVSKISDGNFSSVFKVSKRPEGDCIYAAKELLNGLATFASDIFSLGEVILEAILGSHLPSVGKNSSWSQLRQGYI  343 (524)
T ss_pred             cCCcceeEEccCCccccceeeeecCCCCceEeChhhhccccchHhhhcchhhhhHhhHhhcccccCCCCCCccccccccC
Confidence            4578889999999999999976441 110               112224566666666 48899998887777778889


Q ss_pred             EEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCC-CcEEEeccCCcee
Q 039406          161 VYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFK-FEAKVADFGLAKI  226 (243)
Q Consensus       161 v~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~-~~~kl~DFG~a~~  226 (243)
                      -.|||+++++...+.-  ...+++...+.+..+++.++.++|.        +++||++..+ +..++.|||++..
T Consensus       344 p~e~~~~~s~~l~~~~--~~~~d~~~~~~~~~q~~~~l~~i~s~~~~~~d~~psni~i~~~~~~~~~~~~~~~t~  416 (524)
T KOG0601|consen  344 PLEFCEGGSSSLRSVT--SQMLDEDPRLRLTAQILTALNVIHSKLFVHLDVKPSNILISNDGFFSKLGDFGCWTR  416 (524)
T ss_pred             chhhhcCcchhhhhHH--HHhcCcchhhhhHHHHHhccccccchhhhcccccccceeeccchhhhhccccccccc
Confidence            9999999998876622  2247788889999999999999987        4589999876 8899999999864

>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172

Probab=98.11  E-value=4.9e-05  Score=61.39  Aligned_cols=66  Identities=14%  Similarity=0.117  Sum_probs=47.1

Q ss_pred             cceeeecCceEEEEEEe-----c--CCchhHHHHHHHHHHHHhcCCCc--cceEEEEEEeCCeeEEEEeccCCCC
Q 039406          104 ANLLRQDGFGYVHRGVL-----P--NGKEGEREFQAEVEIISRVHHKH--LVSLVGYYTAGSQRMLVYEFVLNNT  169 (243)
Q Consensus       104 ~~~lg~G~~g~V~~~~~-----~--~~~~~~~~~~~E~~~l~~l~hp~--iv~~~~~~~~~~~~~lv~e~~~~g~  169 (243)
                      ...||+|..+.||+...     +  ..........+|.++|+.+..-.  +.+.+.+....+...+|||+++|..
T Consensus         6 ~~~i~~G~t~~~y~~~~~~~VlR~~~~~~~~~~i~~E~~~l~~l~~~glpvP~~~~~~~~~~~~glv~e~i~G~~   80 (226)
T TIGR02172         6 WTQTGEGGNGESYTHKTGKWMLKLYNPGFDKETIKREFDASRKVFSLGIPTPHPFDLVEDGGRLGLIYELIVGKR   80 (226)
T ss_pred             heeecCCCCcceeEecCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHcCCCCCceEEEEecCCeeeeeeeecCCcc
Confidence            35789999999998421     1  11113456788999999886433  4677888888888899999998863

This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=98.06  E-value=1.2e-06  Score=76.77  Aligned_cols=75  Identities=19%  Similarity=0.214  Sum_probs=62.2

Q ss_pred             eeEEEEeccCCCCHHHHhccCC-CCCCCHHHHHHHHHHHHHhhhH---hhc--CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          157 QRMLVYEFVLNNTLVFHLHGKG-QPTMDWPTRIKIALGSAKGLAY---LHD--DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       157 ~~~lv~e~~~~g~L~~~l~~~~-~~~l~~~~~~~i~~~i~~~l~~---lH~--~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      ++||.|++|+..+|.+||..+. ....++...+.++.|+..+++|   +|+  ++.||++..+..+||.|||+.......
T Consensus       330 ~lyI~Mn~c~~~tledWl~rr~~~e~~s~s~~~~~~~q~~~~~~yk~~ihrdlkp~nif~~~d~q~kIgDFgl~ts~~~~  409 (516)
T KOG1033|consen  330 YLYIQMNLCEKETLEDWLRRRRTGEERSLSLMLDIFKQIAPAVEYKGLIHRDLKPSNIFFSDDDQLKIGDFGLVTSQDKD  409 (516)
T ss_pred             chhhhhhhhhhhhHHHHhhCCCcccccchhHHHHHHHhhccchhhccchhhhccccccccccchhhhhhhhhheeecccC
Confidence            5899999999999999997433 2245677888999999999975   577  458999999999999999999887655


Q ss_pred             C
Q 039406          231 N  231 (243)
Q Consensus       231 ~  231 (243)
                      .
T Consensus       410 ~  410 (516)
T KOG1033|consen  410 E  410 (516)
T ss_pred             C
Confidence            4

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=97.99  E-value=4.6e-06  Score=78.57  Aligned_cols=102  Identities=20%  Similarity=0.290  Sum_probs=65.0

Q ss_pred             CCCCccceeeecCceEEEEEEecCCchhHH-HHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccCCCCHHHHhccC
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKEGER-EFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGK  177 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~-~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~  177 (243)
                      ++|..++.|..|+||.||.++++.+..... .+.+.--+|+     ||.      ...++.++|      |+....++..
T Consensus        83 ~df~~IklisngAygavylvrh~~trqrfa~kiNkq~lilR-----nil------t~a~npfvv------gDc~tllk~~  145 (1205)
T KOG0606|consen   83 SDFNTIKLISNGAYGAVYLVRHKETRQRFAMKINKQNLILR-----NIL------TFAGNPFVV------GDCATLLKNI  145 (1205)
T ss_pred             cccceeEeeccCCCCceeeeeccccccchhhcccccchhhh-----ccc------cccCCccee------chhhhhcccC
Confidence            789999999999999999998876543111 1111111222     111      112233333      4555555544


Q ss_pred             CCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceec
Q 039406          178 GQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIA  227 (243)
Q Consensus       178 ~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~  227 (243)
                      +.  +..        +++.+++|||+        +++|+||+.-|++|++|||+.+..
T Consensus       146 g~--lPv--------dmvla~Eylh~ygivhrdlkpdnllIT~mGhiKlTDfgLsk~G  193 (1205)
T KOG0606|consen  146 GP--LPV--------DMVLAVEYLHSYGIVHRDLKPDNLLITSMGHIKLTDFGLSKKG  193 (1205)
T ss_pred             CC--Ccc--------hhhHHhHhhccCCeecCCCCCCcceeeecccccccchhhhhhh
Confidence            33  322        22667888876        569999999999999999999864

>KOG1266 consensus Protein kinase [Signal transduction mechanisms]

Probab=97.97  E-value=7.1e-06  Score=68.38  Aligned_cols=85  Identities=20%  Similarity=0.289  Sum_probs=68.6

Q ss_pred             HHHHhcCCCccceEEEEEEeCC-----eeEEEEeccCCCCHHHHhccCC--CCCCCHHHHHHHHHHHHHhhhHhhc-CC-
Q 039406          135 EIISRVHHKHLVSLVGYYTAGS-----QRMLVYEFVLNNTLVFHLHGKG--QPTMDWPTRIKIALGSAKGLAYLHD-DL-  205 (243)
Q Consensus       135 ~~l~~l~hp~iv~~~~~~~~~~-----~~~lv~e~~~~g~L~~~l~~~~--~~~l~~~~~~~i~~~i~~~l~~lH~-~~-  205 (243)
                      ..|-++.|-|||+++.|+.+..     +..++.|||..|+|..+|++..  ...+......+|+-||+.||.|||. +| 
T Consensus       119 dnllqlvHsnlvkfH~yw~d~K~~e~~rviFiteymssgs~~~fLkrt~~~~~a~~~~~wkkw~tqIlsal~yLhs~~Pp  198 (458)
T KOG1266|consen  119 DNLLQLVHSNLVKFHKYWTDKKYEEKPRVIFITEYMSSGSLKQFLKRTKKNQKALFQKAWKKWCTQILSALSYLHSCDPP  198 (458)
T ss_pred             HHHHHHHHHHHHHHHHhhcccccccccceEEEEecccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhccCCc
Confidence            4566778999999999886543     5889999999999999997633  3357777888999999999999998 32 


Q ss_pred             --------CcEEECCCCcEEEe
Q 039406          206 --------ANILLDFKFEAKVA  219 (243)
Q Consensus       206 --------~NiLl~~~~~~kl~  219 (243)
                              .-|++..+|-+||.
T Consensus       199 iihgnlTc~tifiq~ngLIkig  220 (458)
T KOG1266|consen  199 IIHGNLTCDTIFIQHNGLIKIG  220 (458)
T ss_pred             cccCCcchhheeecCCceEEec
Confidence                    67888888888875

>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY)

Probab=97.95  E-value=0.0002  Score=57.15  Aligned_cols=122  Identities=14%  Similarity=0.152  Sum_probs=70.5

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCc-----------hhHH---------HHHHHHHHHHhcC---CCccceEEEEEE-
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGK-----------EGER---------EFQAEVEIISRVH---HKHLVSLVGYYT-  153 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~-----------~~~~---------~~~~E~~~l~~l~---hp~iv~~~~~~~-  153 (243)
                      .++|...+++.......|.+-......           ...+         ...+++..+.+++   .-.+..++-+.+ 
T Consensus        30 ~~~~~~~kv~k~~~r~~ValIei~~~kyIlK~pr~~~~r~er~~~sf~kg~~~~~l~~~~~~i~~~g~~~~~~~yl~~ek  109 (229)
T PF06176_consen   30 DNNYKIIKVFKNTKRNYVALIEIDGKKYILKEPREENRRPERRFKSFFKGSEYSRLINNTDKIRNEGFTEPADPYLAAEK  109 (229)
T ss_pred             hCCceEEEeecCCCccEEEEEEECCcEEEEeccchhhhhHHHHHHHHhccHHHHHHHHHHHHHHHcCccccccceeeeee
Confidence            467888788877776666665433321           0111         1223333344443   233333333322 


Q ss_pred             ----eCCeeEEEEeccCCCCHHHHhccCCCCCCCHH---HHHHHHHHHHHhhhHhhcCC--CcEEECCCCcEEEeccCCc
Q 039406          154 ----AGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWP---TRIKIALGSAKGLAYLHDDL--ANILLDFKFEAKVADFGLA  224 (243)
Q Consensus       154 ----~~~~~~lv~e~~~~g~L~~~l~~~~~~~l~~~---~~~~i~~~i~~~l~~lH~~~--~NiLl~~~~~~kl~DFG~a  224 (243)
                          -....+|||||++|..|.++..      +.+.   .+.. ...-+|...++|.||  .|+++++++ ++++||+..
T Consensus       110 k~~~~~~~~~ll~EYIeG~~l~d~~~------i~e~~~~ki~~-~ikqlH~~G~~HGD~hpgNFlv~~~~-i~iID~~~k  181 (229)
T PF06176_consen  110 KIFRYTSSYVLLMEYIEGVELNDIED------IDEDLAEKIVE-AIKQLHKHGFYHGDPHPGNFLVSNNG-IRIIDTQGK  181 (229)
T ss_pred             eeccceeEEEEEEEEecCeecccchh------cCHHHHHHHHH-HHHHHHHcCCccCCCCcCcEEEECCc-EEEEECccc
Confidence                2234678999999988876542      2221   1222 234467778889986  799998555 999999987


Q ss_pred             eec
Q 039406          225 KIA  227 (243)
Q Consensus       225 ~~~  227 (243)
                      +..
T Consensus       182 ~~~  184 (229)
T PF06176_consen  182 RMS  184 (229)
T ss_pred             ccc
Confidence            654

The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process

>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=97.94  E-value=0.00012  Score=58.16  Aligned_cols=100  Identities=23%  Similarity=0.204  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHHHhcCCC--ccceEEEEEEeCC----eeEEEEeccCCC-CHHHHhccCCCCCCCHHHHHHHHHHHHHhhh
Q 039406          127 EREFQAEVEIISRVHHK--HLVSLVGYYTAGS----QRMLVYEFVLNN-TLVFHLHGKGQPTMDWPTRIKIALGSAKGLA  199 (243)
Q Consensus       127 ~~~~~~E~~~l~~l~hp--~iv~~~~~~~~~~----~~~lv~e~~~~g-~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~  199 (243)
                      ..+..+|...+..|..-  .+.+.+.+.+...    ..+||+|++++. +|.+++.....  .+......++.++...+.
T Consensus        55 ~~ra~~E~~~~~~L~~~Gi~tP~pva~~~~r~~~~~~s~lite~l~~~~~L~~~~~~~~~--~~~~~~~~ll~~l~~~i~  132 (206)
T PF06293_consen   55 RSRAKREWRNLQRLREAGIPTPEPVAYGERRKGGGYRSYLITEALPGAQDLRDLLQQWEQ--LDPSQRRELLRALARLIA  132 (206)
T ss_pred             chHHHHHHHHHHHHHHcCCCCCcEEEEEEEcCCCceeEEEEEEeCCCcccHHHHHHhhcc--cchhhHHHHHHHHHHHHH
Confidence            34567888888777433  3455666655422    468999999884 79998875322  344455566666666666


Q ss_pred             Hhhc------CC--CcEEECCCC---cEEEeccCCceecC
Q 039406          200 YLHD------DL--ANILLDFKF---EAKVADFGLAKIAS  228 (243)
Q Consensus       200 ~lH~------~~--~NiLl~~~~---~~kl~DFG~a~~~~  228 (243)
                      -||.      |+  .|||++.++   .+.|+||+-++...
T Consensus       133 ~lH~~gi~H~Dl~~~NILv~~~~~~~~~~lIDld~~~~~~  172 (206)
T PF06293_consen  133 KLHDAGIYHGDLNPSNILVDPDDGQYRFYLIDLDRMRFRP  172 (206)
T ss_pred             HHHHCcCCCCCCCcccEEEeCCCCceeEEEEcchhceeCC
Confidence            6654      54  799998887   89999999888754

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane

>PF12260 PIP49_C: Protein-kinase domain of FAM69; InterPro: IPR022049 Family with sequence similarity 69 has three members (A, B and C)

Probab=97.93  E-value=4.1e-05  Score=60.01  Aligned_cols=93  Identities=19%  Similarity=0.153  Sum_probs=70.8

Q ss_pred             HHHHHHHHhcCC-CccceEEEEEEeCCeeEEEEeccCCCCHHHHhcc-CCCCCCCHHHHHHHHHHHHHhhhHhhc-----
Q 039406          131 QAEVEIISRVHH-KHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHG-KGQPTMDWPTRIKIALGSAKGLAYLHD-----  203 (243)
Q Consensus       131 ~~E~~~l~~l~h-p~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~-~~~~~l~~~~~~~i~~~i~~~l~~lH~-----  203 (243)
                      .+|.-+|+.+.+ +++.+++|.|-.    ++|.||...+++...... ..-...+|..+..|+.+++..+.+++.     
T Consensus         7 ~~E~lll~~l~~~~~~pk~lG~CG~----~~v~E~~~~~~~~~~~~~l~~~~~~~w~~R~~iA~~lL~~l~~l~~~~~~~   82 (188)
T PF12260_consen    7 NNEPLLLQLLQGSEPFPKLLGSCGR----FYVVEYVGAGSLYGIYRPLSQFLQSPWEQRAKIALQLLELLEELDHGPLGF   82 (188)
T ss_pred             ccHHHHHHHcCCCCCCCCeeeECCC----EEEEEeecCccccccccccccccccCHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence            468888998875 699999999843    578999987665421000 000136899999999999999999966     


Q ss_pred             ------CCCcEEECCCCcEEEeccCCceec
Q 039406          204 ------DLANILLDFKFEAKVADFGLAKIA  227 (243)
Q Consensus       204 ------~~~NiLl~~~~~~kl~DFG~a~~~  227 (243)
                            +++|+-+++++++|++|..-+-..
T Consensus        83 ~~lcDv~~~nfgv~~~~~lk~iDld~v~~~  112 (188)
T PF12260_consen   83 FYLCDVSPDNFGVNDDGRLKLIDLDDVFVE  112 (188)
T ss_pred             EEEeecchHHeEEeCCCcEEEEechhcchh
Confidence                  347999999999999999876654

Proteins in this uncharacterised family are described as transmembrane proteins.

>PRK09902 hypothetical protein; Provisional

Probab=97.83  E-value=0.00041  Score=55.08  Aligned_cols=130  Identities=13%  Similarity=0.069  Sum_probs=84.8

Q ss_pred             hCCCCccceeeecCceEEEEEEecCC-----------------chhHHHHHHHHHHHHhcCCCc--cceEEEEEEe----
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNG-----------------KEGEREFQAEVEIISRVHHKH--LVSLVGYYTA----  154 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~-----------------~~~~~~~~~E~~~l~~l~hp~--iv~~~~~~~~----  154 (243)
                      ..++...---|+|+.+.|++..+...                 +.....|.+|+..|.+|..-+  +.++..+...    
T Consensus        17 ~~~wve~pN~~rgG~SgV~r~~~~g~~~ylKrq~nhl~~s~r~P~g~ptf~rE~~~L~~L~~~GvPVP~pvf~~~~k~~~   96 (216)
T PRK09902         17 EGDWVEEPNYRRNGMSGVQCVERNGKKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVIVPKIVFGEAVKIEG   96 (216)
T ss_pred             CCceecCCCcCCCCcceEEEEEeCCcEEEEEeccCcccccccCCCCchHHHHHHHHHHHHHHcCCCCCccceeeeeccCC
Confidence            34444444456677777776542211                 114567899999999885332  4444422111    


Q ss_pred             CCeeEEEEeccCC-CCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc------CC--CcEEECCCCc--EEEeccCC
Q 039406          155 GSQRMLVYEFVLN-NTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD------DL--ANILLDFKFE--AKVADFGL  223 (243)
Q Consensus       155 ~~~~~lv~e~~~~-g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~------~~--~NiLl~~~~~--~kl~DFG~  223 (243)
                      ....+||+|-+.| .+|.+++....-...+......++.+++..+.-||.      ++  .|||++.++.  ++++||--
T Consensus        97 ~~rA~LVTe~L~g~~~L~~~l~~~~~~~~~~~~k~~il~~va~~ia~LH~~Gv~Hgdly~khIll~~~g~~~v~lIDlEk  176 (216)
T PRK09902         97 EWRALLVTEDMAGFISIADWYAQHAVSPYSDEVRQAMLKAVALAFKKMHSVNRQHGCCYVRHIYVKTEGKAEAGFLDLEK  176 (216)
T ss_pred             ceEEEEEEEeCCCCccHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHCCCcCCCCCHhheeecCCCCeeEEEEEhhc
Confidence            1247799997754 589888865432235666667888888888888876      44  6999986666  99999987


Q ss_pred             ceec
Q 039406          224 AKIA  227 (243)
Q Consensus       224 a~~~  227 (243)
                      ++..
T Consensus       177 ~r~~  180 (216)
T PRK09902        177 SRRR  180 (216)
T ss_pred             cchh
Confidence            7653

>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]

Probab=97.82  E-value=5.3e-05  Score=68.00  Aligned_cols=121  Identities=21%  Similarity=0.243  Sum_probs=75.8

Q ss_pred             cceeeecCceEEEEEEecCCch-------------------------------------------------hHHHHHHHH
Q 039406          104 ANLLRQDGFGYVHRGVLPNGKE-------------------------------------------------GEREFQAEV  134 (243)
Q Consensus       104 ~~~lg~G~~g~V~~~~~~~~~~-------------------------------------------------~~~~~~~E~  134 (243)
                      .+-|+.-+.|.||+|++++++.                                                 ..-.|.+|.
T Consensus       166 ~~piaaASlaQVhrA~L~~G~~VaVKVQ~P~l~~~~~~Dl~~~~~~~~~l~k~~p~~~~~~lvdE~~~~L~~ELDF~~EA  245 (538)
T KOG1235|consen  166 EEPIAAASLAQVHRARLKNGEDVAVKVQHPGLEKLIMLDLRNLRLLAKVLQKFFPDFDLVWLVDEIAKSLPQELDFTKEA  245 (538)
T ss_pred             cchhhhcchhheEEEEecCCCEEEEEecCcChHHHHHHHHHHHHHHHHHHHHhCcCCchhhHHHHHHhhhHhhcchHHHH
Confidence            3578889999999999887642                                                 111244455


Q ss_pred             HHHHh----cCCCc------cceEEEEEEeCCeeEEEEeccCCCCHHHH--hccCCCCCCCHHHHH-----HHHHHHHHh
Q 039406          135 EIISR----VHHKH------LVSLVGYYTAGSQRMLVYEFVLNNTLVFH--LHGKGQPTMDWPTRI-----KIALGSAKG  197 (243)
Q Consensus       135 ~~l~~----l~hp~------iv~~~~~~~~~~~~~lv~e~~~~g~L~~~--l~~~~~~~l~~~~~~-----~i~~~i~~~  197 (243)
                      +...+    +.|-+      |.++|..  ....-.|+||||+|..+.|.  |.+.+   ++...+.     .++.||+ .
T Consensus       246 ~Nae~~~~~f~~~~~~~~V~VP~Vy~~--~st~RVLtME~~~G~~i~Dl~~i~~~g---i~~~~i~~~l~~~~~~qIf-~  319 (538)
T KOG1235|consen  246 KNAERFRENFKDFSLLTYVLVPKVYWD--LSTKRVLTMEYVDGIKINDLDAIDKRG---ISPHDILNKLVEAYLEQIF-K  319 (538)
T ss_pred             HhHHHHHHHHHhcccccceeCCeehhh--cCcceEEEEEecCCccCCCHHHHHHcC---CCHHHHHHHHHHHHHHHHH-h
Confidence            44333    33444      3444332  23456899999999766544  33333   4433332     2333433 3


Q ss_pred             hhHhhcCC--CcEEECC----CCcEEEeccCCceecCCC
Q 039406          198 LAYLHDDL--ANILLDF----KFEAKVADFGLAKIASDV  230 (243)
Q Consensus       198 l~~lH~~~--~NiLl~~----~~~~kl~DFG~a~~~~~~  230 (243)
                      -.|+|.||  .||+++.    ++.+.+.|||+.+.+...
T Consensus       320 ~GffHaDPHPGNilv~~~~~~~~~ivllDhGl~~~is~~  358 (538)
T KOG1235|consen  320 TGFFHADPHPGNILVRPNPEGDEEIVLLDHGLYAVISHK  358 (538)
T ss_pred             cCCccCCCCCCcEEEecCCCCCccEEEEcccccccccHH
Confidence            34789987  7999984    578999999999877543

>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]

Probab=97.79  E-value=0.00019  Score=58.11  Aligned_cols=97  Identities=18%  Similarity=0.149  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHhcC--CCccceEEEEEEeCCeeEEEEeccCCC-CHHHHhccCCCCC----CCHHHHHHHHHHHHHhhhHh
Q 039406          129 EFQAEVEIISRVH--HKHLVSLVGYYTAGSQRMLVYEFVLNN-TLVFHLHGKGQPT----MDWPTRIKIALGSAKGLAYL  201 (243)
Q Consensus       129 ~~~~E~~~l~~l~--hp~iv~~~~~~~~~~~~~lv~e~~~~g-~L~~~l~~~~~~~----l~~~~~~~i~~~i~~~l~~l  201 (243)
                      ...+|+..|+++.  +-.+.+-+.+.    .-.|||||+... .-.-.|..-....    --+..++..+..+++.....
T Consensus       114 W~~kEf~NL~R~~eAGVrvP~Pi~~~----~nVLvMEfIg~~g~pAP~LkDv~~e~~e~~~~~~~~v~~~~~l~~~a~LV  189 (268)
T COG1718         114 WARKEFRNLKRAYEAGVRVPEPIAFR----NNVLVMEFIGDDGLPAPRLKDVPLELEEAEGLYEDVVEYMRRLYKEAGLV  189 (268)
T ss_pred             HHHHHHHHHHHHHHcCCCCCCceeec----CCeEEEEeccCCCCCCCCcccCCcCchhHHHHHHHHHHHHHHHHHhcCcc
Confidence            3456888888874  33444555543    246999999442 1111121111000    01334455556666666777


Q ss_pred             hcCCC--cEEECCCCcEEEeccCCceecCCC
Q 039406          202 HDDLA--NILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       202 H~~~~--NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      |.|++  |||+. ++.+.|+|||-|.....+
T Consensus       190 HgDLSEyNiL~~-~~~p~iID~~QaV~~~hp  219 (268)
T COG1718         190 HGDLSEYNILVH-DGEPYIIDVSQAVTIDHP  219 (268)
T ss_pred             cccchhhheEEE-CCeEEEEECccccccCCC
Confidence            99996  99999 889999999999876543

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=97.47  E-value=1.1e-05  Score=72.75  Aligned_cols=130  Identities=12%  Similarity=0.063  Sum_probs=90.7

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch-------hHHHHHHHHHHHHhcCCCc-cceEEEEEEeCCeeEEEEeccCCC-C
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE-------GEREFQAEVEIISRVHHKH-LVSLVGYYTAGSQRMLVYEFVLNN-T  169 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~-------~~~~~~~E~~~l~~l~hp~-iv~~~~~~~~~~~~~lv~e~~~~g-~  169 (243)
                      ..+....-+++++++.++|.+....+.       ......-++++|.+++||| .+..++-+..+...+++|+++.++ +
T Consensus       242 kws~~fh~fvK~altknpKkRptaeklL~h~fvs~~l~~rl~~eLLdK~n~P~~~v~~~~d~~~E~~~~i~~~i~s~~rs  321 (829)
T KOG0576|consen  242 KWSEFFHNFVKGALTKNPKKRPTAEKLLQHPFVSQTLSRRLAIELLDKVNNPNPVVRYLEDYDGEDYLWIPMRICSTGRS  321 (829)
T ss_pred             cchHHHHHHHHHHhcCCCccCCChhhheeceeeccchhhHHHHHHHHHccCCCCcccccccCCcccccchhhhhhcCCcc
Confidence            444555667889999999987544432       1133455789999999999 777777777788899999999876 2


Q ss_pred             HHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhcC----CCcEEECCCCcEEEeccCCceecCCC
Q 039406          170 LVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHDD----LANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       170 L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~----~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      ....+... ...+...+...+.+.-+.+++++|+.    .+|||..+ +..|..||+....+...
T Consensus       322 ~~~~~~~s-e~~~~~~~~~~~~r~et~~l~~l~~~~~~~~d~~l~s~-~~~~~~~~~v~~~L~~~  384 (829)
T KOG0576|consen  322 SALEMTVS-EIALEQYQFAYPLRKETRPLAELHSSYKVHRDNILGSE-EEVKLLDFAVPPQLTRT  384 (829)
T ss_pred             ccccCChh-hHhhhhhhhhhhhhhhcccccccccccccCcccccccc-cccccccccCCcccCcc
Confidence            22222111 11234445556677788899999986    46888764 77899999999877654

>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily

Probab=97.41  E-value=0.0033  Score=50.12  Aligned_cols=69  Identities=13%  Similarity=0.183  Sum_probs=47.7

Q ss_pred             cceeeecCceEEEEEEecCCc---------hhHHHHHHHHHHHHhcCCC--ccceEEEEEE---eCCeeEEEEeccCCCC
Q 039406          104 ANLLRQDGFGYVHRGVLPNGK---------EGEREFQAEVEIISRVHHK--HLVSLVGYYT---AGSQRMLVYEFVLNNT  169 (243)
Q Consensus       104 ~~~lg~G~~g~V~~~~~~~~~---------~~~~~~~~E~~~l~~l~hp--~iv~~~~~~~---~~~~~~lv~e~~~~g~  169 (243)
                      ++.|+.|..+.||+....++.         .....+.+|..+++.+...  .+.+++.+..   .....+++|++++|..
T Consensus         2 i~~l~~G~~n~~~~v~~~~~~~vlK~~~~~~~~~~~~~e~~~~~~l~~~~~pvP~~~~~~~~~~~~~~~~~~~~~i~g~~   81 (239)
T PF01636_consen    2 IRPLSGGFSNRVYRVTTDDGRYVLKFYRPPDAAERLRREAAVLRQLAEHGIPVPRVLAFDTSDEFNGFPYLLMEYIPGRP   81 (239)
T ss_dssp             EEEEEESSSSEEEEEEETTSEEEEEEESSHHHHHHHHHHHHHHHHHHHTTSBS--EEEEEEETEETSEEEEEEEEESSEE
T ss_pred             CccCCCCCeeeEEEEEECCcEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCCceEEeecccccccccceEEEEEecccc
Confidence            357888989999988765532         2356778899998888532  3556666443   3345789999999987


Q ss_pred             HHH
Q 039406          170 LVF  172 (243)
Q Consensus       170 L~~  172 (243)
                      +..
T Consensus        82 ~~~   84 (239)
T PF01636_consen   82 LDD   84 (239)
T ss_dssp             HHH
T ss_pred             ccc
Confidence            777

; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....

>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH)

Probab=97.26  E-value=0.0032  Score=51.18  Aligned_cols=45  Identities=13%  Similarity=0.132  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHhcC-CCccceEEEEEEeCCeeEEEEeccCCCCHHH
Q 039406          128 REFQAEVEIISRVH-HKHLVSLVGYYTAGSQRMLVYEFVLNNTLVF  172 (243)
Q Consensus       128 ~~~~~E~~~l~~l~-hp~iv~~~~~~~~~~~~~lv~e~~~~g~L~~  172 (243)
                      ..+.+|+++++.+. +--+.+++++....+..++|||+++|..|..
T Consensus        36 ~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~lv~e~i~G~~l~~   81 (244)
T cd05150          36 YELEREAERLRWLAGKLPVPEVIDYGSDDGRAWLLTSAVPGVPAAA   81 (244)
T ss_pred             cchHHHHHHHHHHHhcCCCCeEEEEEecCCccEEEEEeeCCccHhH
Confidence            35678999988884 4445677887777677899999999877664

The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio

>PF10707 YrbL-PhoP_reg: PhoP regulatory network protein YrbL; InterPro: IPR019647 This entry represents proteins that are activated by the protein PhoP

Probab=97.14  E-value=0.018  Score=45.51  Aligned_cols=120  Identities=18%  Similarity=0.173  Sum_probs=74.9

Q ss_pred             ccceeeecCceEEEEEEe----------cCC----------------chhHHHHHHHHHHHHhcC------CCccceEEE
Q 039406          103 DANLLRQDGFGYVHRGVL----------PNG----------------KEGEREFQAEVEIISRVH------HKHLVSLVG  150 (243)
Q Consensus       103 ~~~~lg~G~~g~V~~~~~----------~~~----------------~~~~~~~~~E~~~l~~l~------hp~iv~~~~  150 (243)
                      ....||+|+.-.||.--.          ...                ....+...+|+.....+.      +.+|.++||
T Consensus         5 ~~~~i~~G~~R~cy~HP~dp~~cIKV~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~E~~~y~~l~~~~~~~~~~i~r~~G   84 (199)
T PF10707_consen    5 ESDLIAQGGERDCYQHPDDPNLCIKVMRPDRGERRRPFKRWLKRLRPKSRYRQNRRELRYYKQLSLRRGVDWSHIPRFYG   84 (199)
T ss_pred             CCcccccCCCceEEECCCCCCeEEEEEccccccccccchhHHHhhcccchhHHHHHHHHHHHHHhhccCCcccccccEeE
Confidence            346789999988886411          111                012456677776666555      889999999


Q ss_pred             EEEeCCeeEEEEeccCC------CCHHHHhccCCCCCCCHHHHHHHHHHHHHhh---hHhhc--CCCcEEECCC--C--c
Q 039406          151 YYTAGSQRMLVYEFVLN------NTLVFHLHGKGQPTMDWPTRIKIALGSAKGL---AYLHD--DLANILLDFK--F--E  215 (243)
Q Consensus       151 ~~~~~~~~~lv~e~~~~------g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l---~~lH~--~~~NiLl~~~--~--~  215 (243)
                      +.+++--.-+|+|.+.+      -+|.+++....   ++. .....+.++..-|   ..+..  ++.||++...  +  .
T Consensus        85 ~veT~~G~Glv~e~I~d~dG~~s~TL~~~l~~~~---~~~-~~~~~L~~f~~~l~~~~Iv~~dl~~~NIv~~~~~~~~~~  160 (199)
T PF10707_consen   85 FVETNLGLGLVVELIRDADGNISPTLEDYLKEGG---LTE-ELRQALDEFKRYLLDHHIVIRDLNPHNIVVQRRDSGEFR  160 (199)
T ss_pred             EEecCCceEEEEEEEECCCCCcCccHHHHHHcCC---ccH-HHHHHHHHHHHHHHHcCCeecCCCcccEEEEecCCCceE
Confidence            99999999999998742      46888885433   444 3333333333222   22223  4589999532  2  5


Q ss_pred             EEEec-cCCcee
Q 039406          216 AKVAD-FGLAKI  226 (243)
Q Consensus       216 ~kl~D-FG~a~~  226 (243)
                      +.|+| ||-...
T Consensus       161 lvlIDG~G~~~~  172 (199)
T PF10707_consen  161 LVLIDGLGEKEL  172 (199)
T ss_pred             EEEEeCCCCccc
Confidence            88888 554443

PhoP controls the expression of a large number of genes that mediate adaptation to low Mg2+ environments and/or virulence in several bacterial species. YbrL is proposed to be acting in a loop activity with PhoP and PrmA analogous to the multi-component loop in Salmonella sp., where the PhoP-dependent PmrD protein activates the regulatory protein PmrA, and the activated PmrA then represses transcription from the PmrD promoter which harbours binding sites for both the PhoP and PmrA proteins. Expression of YrbL is induced in low Mg2+ in a PhoP-dependent fashion and repressed by Fe3+ in a PmrA-dependent manner [].

>KOG2268 consensus Serine/threonine protein kinase [Signal transduction mechanisms; General function prediction only]

Probab=97.10  E-value=0.0015  Score=55.10  Aligned_cols=121  Identities=14%  Similarity=0.077  Sum_probs=77.6

Q ss_pred             CCccceeeecCceEEEEEEecCCch----------------------------------hHHHHHHHHHHHHhcC-CC-c
Q 039406          101 FSDANLLRQDGFGYVHRGVLPNGKE----------------------------------GEREFQAEVEIISRVH-HK-H  144 (243)
Q Consensus       101 ~~~~~~lg~G~~g~V~~~~~~~~~~----------------------------------~~~~~~~E~~~l~~l~-hp-~  144 (243)
                      +.+++.||-|.-+.||.+...++..                                  .+-...+|+..|+.|. |- -
T Consensus        94 ~svGnqIGVGKESDIY~v~d~~G~~~~lK~HRLGRtSFR~Vk~kRDY~r~r~~~sWlyLSRlaa~kEfafmkaL~e~gfp  173 (465)
T KOG2268|consen   94 ESVGNQIGVGKESDIYVVADEEGNPLILKLHRLGRTSFRNVKNKRDYLRKRKSGSWLYLSRLAATKEFAFMKALYERGFP  173 (465)
T ss_pred             hhhccccccccccceEEEecCCCCchhHHHHhhhhhhHHHhhhhhhhHhcCCccchhhhHHHHHHHHHHHHHHHHHcCCC
Confidence            5678899999999999997664432                                  1123456888888874 22 2


Q ss_pred             cceEEEEEEeCCeeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhcCCC--cEEECCCCcEEEeccC
Q 039406          145 LVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHDDLA--NILLDFKFEAKVADFG  222 (243)
Q Consensus       145 iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~~~--NiLl~~~~~~kl~DFG  222 (243)
                      +.+.++    .++-++|||++.|-.|...-+-... .--...++.++..++. -.++|.|-.  ||++++++.++++||=
T Consensus       174 VPkpiD----~~RH~Vvmelv~g~Pl~~v~~v~d~-~~ly~~lm~~Iv~la~-~GlIHgDFNEFNimv~dd~~i~vIDFP  247 (465)
T KOG2268|consen  174 VPKPID----HNRHCVVMELVDGYPLRQVRHVEDP-PTLYDDLMGLIVRLAN-HGLIHGDFNEFNIMVKDDDKIVVIDFP  247 (465)
T ss_pred             CCCccc----ccceeeHHHhhcccceeeeeecCCh-HHHHHHHHHHHHHHHH-cCceecccchheeEEecCCCEEEeech
Confidence            333443    3667899999999877654422111 1112233344444432 356788873  9999999999999997


Q ss_pred             Cceec
Q 039406          223 LAKIA  227 (243)
Q Consensus       223 ~a~~~  227 (243)
                      -....
T Consensus       248 QmvS~  252 (465)
T KOG2268|consen  248 QMVST  252 (465)
T ss_pred             Hhhcc
Confidence            55443

>PLN02876 acyl-CoA dehydrogenase

Probab=96.91  E-value=0.0046  Score=59.29  Aligned_cols=96  Identities=17%  Similarity=0.169  Sum_probs=65.5

Q ss_pred             cceeeecCceEEEEEEecCCc----------------hhHHHHHHHHHHHHhcC-CCcc--ceEEEEEEeC---CeeEEE
Q 039406          104 ANLLRQDGFGYVHRGVLPNGK----------------EGEREFQAEVEIISRVH-HKHL--VSLVGYYTAG---SQRMLV  161 (243)
Q Consensus       104 ~~~lg~G~~g~V~~~~~~~~~----------------~~~~~~~~E~~~l~~l~-hp~i--v~~~~~~~~~---~~~~lv  161 (243)
                      .+.|+.|.++.+|+.....+.                .....+.+|+++|+.|. |.+|  .+++.++.+.   +..|+|
T Consensus        43 v~~l~gG~sn~ty~l~~~~~~~~~~~VLR~~p~~~~~~~~~~~~rE~~~l~~L~~~~~vpVP~v~~~~~d~~v~G~~flV  122 (822)
T PLN02876         43 VSQFGHGQSNPTFLLEVGNGGSVKRYVLRKKPPGKLLQSAHAVEREYQVLRALGEHTDVPVPKVYCLCTDASVIGTAFYI  122 (822)
T ss_pred             EEEeCCCCcCceEEEEECCCCcceeEEEEeCCCCccCccHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCCCcCCCceEE
Confidence            567888888888876544321                12346889999999995 6665  7778777654   468899


Q ss_pred             EeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc
Q 039406          162 YEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD  203 (243)
Q Consensus       162 ~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~  203 (243)
                      |||++|..+.+..    -..++......++.+++..|..||.
T Consensus       123 ME~v~G~~~~~~~----~~~~~~~~r~~l~~~l~~~La~LH~  160 (822)
T PLN02876        123 MEYLEGRIFVDPK----LPGVAPERRRAIYRATAKVLAALHS  160 (822)
T ss_pred             EEecCCcccCCcc----CCCCCHHHHHHHHHHHHHHHHHHhC
Confidence            9999885443211    1124555666777888888887776

>COG5072 ALK1 Serine/threonine kinase of the haspin family [Cell division and chromosome partitioning]

Probab=96.87  E-value=0.0033  Score=53.85  Aligned_cols=65  Identities=18%  Similarity=0.254  Sum_probs=45.1

Q ss_pred             CeeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHh-------hcCC--CcEEECCCCcEEEeccCCcee
Q 039406          156 SQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL-------HDDL--ANILLDFKFEAKVADFGLAKI  226 (243)
Q Consensus       156 ~~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~l-------H~~~--~NiLl~~~~~~kl~DFG~a~~  226 (243)
                      .+.|++|++- |+.|.. +.     .-.+.++..|+.+.+.-+..+       |+++  .||||+ +|+|.|+||-++|.
T Consensus       299 ~y~yl~~kdh-gt~is~-ik-----~~~~~e~lsff~s~~sil~~lekkf~fehrnlt~~niLId-~GnvtLIDfklsRl  370 (488)
T COG5072         299 LYLYLHFKDH-GTPISI-IK-----ADRSEEELSFFWSCISILDILEKKFPFEHRNLTLDNILID-EGNVTLIDFKLSRL  370 (488)
T ss_pred             eEEEEEEecC-Cceeee-ee-----cccHHHHHHHHHHHHHHHhhhhhcCCcccccccccceeee-cCceEEEEeeeeec
Confidence            3577888876 556642 21     135667777766655444443       8865  799999 99999999999995


Q ss_pred             cC
Q 039406          227 AS  228 (243)
Q Consensus       227 ~~  228 (243)
                      -.
T Consensus       371 ~~  372 (488)
T COG5072         371 SY  372 (488)
T ss_pred             cc
Confidence            43

>PRK10593 hypothetical protein; Provisional

Probab=96.65  E-value=0.012  Score=49.55  Aligned_cols=97  Identities=12%  Similarity=0.053  Sum_probs=67.7

Q ss_pred             CCccceeeecCceEEEEEEecCCc-------h--hHHHHHHHHHHHHhcCC---CccceEEEEEEe---CCeeEEEEecc
Q 039406          101 FSDANLLRQDGFGYVHRGVLPNGK-------E--GEREFQAEVEIISRVHH---KHLVSLVGYYTA---GSQRMLVYEFV  165 (243)
Q Consensus       101 ~~~~~~lg~G~~g~V~~~~~~~~~-------~--~~~~~~~E~~~l~~l~h---p~iv~~~~~~~~---~~~~~lv~e~~  165 (243)
                      ....+.||.|..+.||+....+++       .  ....+.+|.+.|+.|.-   -.+.++++++.+   .+..+||||++
T Consensus        16 ~~~~~~i~~G~~~~vy~~~~~~~~~~~k~~~~~~~~~~~~~Ea~~L~~L~~~~~vpVP~V~~~~~~~~~~g~~~LVmE~i   95 (297)
T PRK10593         16 LSRVECISEQPYAALWALYDSQGNPMPLMARSFSTPGVAQQEAWKLSMLARSGTVRMPTVYGVMTHEQSPGPDVLLLERL   95 (297)
T ss_pred             hheeeecCCccceeEEEEEcCCCCEEEEEecccccchHHHHHHHHHHHHccCCCCCcCcEEEEeccCCcCCCeEEEEecc
Confidence            344668999999999986432221       1  23578899999998853   357788887754   36689999999


Q ss_pred             CCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhcC
Q 039406          166 LNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHDD  204 (243)
Q Consensus       166 ~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~  204 (243)
                      +++++.+.       .........+..+++..|.-||+.
T Consensus        96 ~G~~~~~~-------~~~~~~~~~l~~~l~~~La~LH~~  127 (297)
T PRK10593         96 RGVSVEAP-------ARTPERWEQLKDQIVEGLLAWHRI  127 (297)
T ss_pred             CCEecCCC-------CCCHHHHHHHHHHHHHHHHHHhCC
Confidence            99877651       122334455667777888888873

>cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members

Probab=96.57  E-value=0.017  Score=46.64  Aligned_cols=45  Identities=16%  Similarity=0.175  Sum_probs=28.9

Q ss_pred             hHHHHHHHHHHHHhcCCC---ccceEEEEEEeC---CeeEEEEeccCCCCH
Q 039406          126 GEREFQAEVEIISRVHHK---HLVSLVGYYTAG---SQRMLVYEFVLNNTL  170 (243)
Q Consensus       126 ~~~~~~~E~~~l~~l~hp---~iv~~~~~~~~~---~~~~lv~e~~~~g~L  170 (243)
                      ....+.+|.++|..|...   -+.++++.....   ...|++|++++|.++
T Consensus        31 ~~~~~~~E~~~l~~L~~~~~v~vP~~~~~~~~~~~~~~~~~l~~~i~G~~l   81 (235)
T cd05155          31 YAGQVRKEQRWLPRLAPHLPLPVPEPLGKGEPGEGYPWPWSVYRWLEGETA   81 (235)
T ss_pred             hHHHHHHHHHHHHHHhccCCCCCCceeecCCCccCCCcceEEEEeecCCCC
Confidence            455788999999887532   344444443322   235889999988665

The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resista

>cd05153 HomoserineK_II Homoserine Kinase, type II

Probab=95.91  E-value=0.12  Score=43.12  Aligned_cols=67  Identities=7%  Similarity=0.043  Sum_probs=39.7

Q ss_pred             cceeeecCceEEEEEEecCCc--------hhHHHHHHHHHHHHhcCCC--ccceEEE------EEEeCCeeEEEEeccCC
Q 039406          104 ANLLRQDGFGYVHRGVLPNGK--------EGEREFQAEVEIISRVHHK--HLVSLVG------YYTAGSQRMLVYEFVLN  167 (243)
Q Consensus       104 ~~~lg~G~~g~V~~~~~~~~~--------~~~~~~~~E~~~l~~l~hp--~iv~~~~------~~~~~~~~~lv~e~~~~  167 (243)
                      .+.|..|....+|+....++.        .....+..|+.++..|.+-  .+.+++.      +....+..++||+|++|
T Consensus        19 i~~i~~G~~n~~y~v~~~~~~~vLr~~~~~~~~~~~~e~~~l~~L~~~g~~vp~~i~~~~g~~~~~~~~~~~~l~~~i~G   98 (296)
T cd05153          19 FEGISAGIENTNYFVTTDSGRYVLTLFEKVSAEELPFFLALLDHLAERGLPVPRPIADRDGEYLSELAGKPAALVEFLAG   98 (296)
T ss_pred             eecccCccccceEEEEeCCCcEEEEEcCCCChHhccHHHHHHHHHHHCCCCCCccccCCCCcEeeeeCCceEEEEEeCCC
Confidence            445666666677765432211        2345567788888877432  2444433      12345567899999988


Q ss_pred             CCH
Q 039406          168 NTL  170 (243)
Q Consensus       168 g~L  170 (243)
                      ..+
T Consensus        99 ~~~  101 (296)
T cd05153          99 EHL  101 (296)
T ss_pred             CCC
Confidence            654

Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a PK fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine.

>PF13095 FTA2: Kinetochore Sim4 complex subunit FTA2

Probab=95.89  E-value=0.053  Score=42.86  Aligned_cols=111  Identities=20%  Similarity=0.249  Sum_probs=69.0

Q ss_pred             CCCCccceeeecCc-eEEEEEEecCCc--------------------------------hhHHHHHHHHHHHHhc---CC
Q 039406           99 DGFSDANLLRQDGF-GYVHRGVLPNGK--------------------------------EGEREFQAEVEIISRV---HH  142 (243)
Q Consensus        99 ~~~~~~~~lg~G~~-g~V~~~~~~~~~--------------------------------~~~~~~~~E~~~l~~l---~h  142 (243)
                      .+++.++.||.|.- |.||++......                                ....-|..|.+...+|   .+
T Consensus        37 ~~I~flefLg~g~~~~~V~kv~I~g~~YALKlf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~PF~~ECRAfgRLke~~~  116 (207)
T PF13095_consen   37 DDIEFLEFLGHGSHDGYVFKVEIDGRIYALKLFRFWDYTEPDYTRERFAGHETSLSTPAHYADPFNCECRAFGRLKEAGR  116 (207)
T ss_pred             CcEeeeeecCCCCceeEEEEEEECCeEEEEEEeeccccCCCccccccccccccccchhhhhcChHHHHHHhhHHHHhccc
Confidence            67888999999999 999999643321                                1123467788877666   45


Q ss_pred             Ccc--ceEEEEEEeC------------------CeeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhh
Q 039406          143 KHL--VSLVGYYTAG------------------SQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLH  202 (243)
Q Consensus       143 p~i--v~~~~~~~~~------------------~~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH  202 (243)
                      .++  |+++||+.-.                  ....||.||+....           .+..    .-+.+|+.-|..+|
T Consensus       117 e~~~Avkc~Gyl~L~~~~q~~~~~~~~~~~~~~~~~aIVKD~v~~~~-----------~~~~----~~~~~~~~dl~~~~  181 (207)
T PF13095_consen  117 EGLWAVKCHGYLLLTEDQQFEQLRQRGSDHRPLPIRAIVKDFVPDDP-----------PLQI----RDIPQMLRDLKILH  181 (207)
T ss_pred             cCceEEEeeEEEEEchHHHHHHhhcccccCCCCccEEEEEeecCCcc-----------ccch----hHHHHHHHHHHHHH
Confidence            566  9999987422                  12457788776543           1222    23456666677777


Q ss_pred             cCC---CcEEECCCCcEEEeccCCc
Q 039406          203 DDL---ANILLDFKFEAKVADFGLA  224 (243)
Q Consensus       203 ~~~---~NiLl~~~~~~kl~DFG~a  224 (243)
                      +.-   ..+-..+-..-||+|||.+
T Consensus       182 k~gI~~~Dv~~~ny~~G~lvDfs~~  206 (207)
T PF13095_consen  182 KLGIVPRDVKPRNYRGGKLVDFSSS  206 (207)
T ss_pred             HCCeeeccCccccccCCEEEecccC
Confidence            621   1222222235689999864

>TIGR00938 thrB_alt homoserine kinase, Neisseria type

Probab=95.85  E-value=0.15  Score=42.89  Aligned_cols=80  Identities=13%  Similarity=0.063  Sum_probs=44.5

Q ss_pred             cHHHHHHHhCCCCc-----cceeeecCceEEEEEEecCCch---------hHHHHHHHHHHHHhcCCC--ccceEEEE--
Q 039406           90 TYEELARATDGFSD-----ANLLRQDGFGYVHRGVLPNGKE---------GEREFQAEVEIISRVHHK--HLVSLVGY--  151 (243)
Q Consensus        90 ~~~~~~~~~~~~~~-----~~~lg~G~~g~V~~~~~~~~~~---------~~~~~~~E~~~l~~l~hp--~iv~~~~~--  151 (243)
                      +-+++......|.+     .+.++.|....+|+....+++.         ....+..|+.++..|..-  .+.+++..  
T Consensus         8 ~~~~l~~~l~~y~~~~~~~i~~~~~G~~n~~y~v~t~~~~~vLK~~~~~~~~~~i~~e~~~l~~L~~~g~pvp~~i~t~~   87 (307)
T TIGR00938         8 SDEEMSSFLDGYDLGELLSLKGIAEGVENSNYLLTTDVGRYILTLYEKRVKAEELPFFLALTTHLAARGLPVPKPVKSRD   87 (307)
T ss_pred             CHHHHHHHHHhcCCCCceeccccCCccccceEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHHHHHHCCCCCCccccCCC
Confidence            33455555445533     4556667667788765332211         134556677777777322  23444331  


Q ss_pred             ----EEeCCeeEEEEeccCCCC
Q 039406          152 ----YTAGSQRMLVYEFVLNNT  169 (243)
Q Consensus       152 ----~~~~~~~~lv~e~~~~g~  169 (243)
                          ....+..+++|||++|..
T Consensus        88 g~~~~~~~g~~~~l~e~i~G~~  109 (307)
T TIGR00938        88 GRQLSTLAGKPACLVEFLQGLS  109 (307)
T ss_pred             CCeehhcCCeEEEEEEeCCCCC
Confidence                123456889999998844

Homoserine kinase is required in the biosynthesis of threonine from aspartate.The member of this family from Pseudomonas aeruginosa was shown by direct assay and complementation to act specifically as a homoserine kinase.

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=95.10  E-value=0.0028  Score=60.54  Aligned_cols=86  Identities=19%  Similarity=0.228  Sum_probs=65.9

Q ss_pred             cCCCccceEEEEEEeCCeeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEEC
Q 039406          140 VHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLD  211 (243)
Q Consensus       140 l~hp~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~  211 (243)
                      .++|.++....-+......+|||+|+.+++|...++..+  ..+..-++.++..+..+++|||.        ++.|+|+.
T Consensus       861 p~~P~v~~~~~s~~~rsP~~L~~~~~~~~~~~Skl~~~~--~~saepaRs~i~~~vqs~e~L~s~~r~h~~~~p~~~l~~  938 (1205)
T KOG0606|consen  861 PRSPAVVRSFPSFPCRSPLPLVGHYLNGGDLPSKLHNSG--CLSAEPARSPILERVQSLESLHSSLRKHRDLKPDSLLIA  938 (1205)
T ss_pred             CCCCceecccCCCCCCCCcchhhHHhccCCchhhhhcCC--CcccccccchhHHHHhhhhccccchhhcccccccchhhc
Confidence            445666655444556778999999999999999887655  24555566677778888888865        45899999


Q ss_pred             CCCcEEEeccCCceec
Q 039406          212 FKFEAKVADFGLAKIA  227 (243)
Q Consensus       212 ~~~~~kl~DFG~a~~~  227 (243)
                      .++..++.|||.....
T Consensus       939 ~~gh~~l~~~~t~~~v  954 (1205)
T KOG0606|consen  939 YDGHRPLTDFGTLSKV  954 (1205)
T ss_pred             ccCCcccCcccccccc
Confidence            9999999999966554

>TIGR02721 ycfN_thiK thiamine kinase

Probab=94.77  E-value=0.14  Score=41.86  Aligned_cols=26  Identities=27%  Similarity=0.259  Sum_probs=21.8

Q ss_pred             HhhcCC--CcEEECCCCcEEEeccCCcee
Q 039406          200 YLHDDL--ANILLDFKFEAKVADFGLAKI  226 (243)
Q Consensus       200 ~lH~~~--~NiLl~~~~~~kl~DFG~a~~  226 (243)
                      .+|.|+  .|||++.++ ++|+||..|..
T Consensus       148 l~H~Dl~~~Nil~~~~~-~~lIDwE~a~~  175 (256)
T TIGR02721       148 PLHMDVHAYNLVVTPQG-LKLIDWEYASD  175 (256)
T ss_pred             eecCCCCcCcEEEeCCC-CEEEeccccCc
Confidence            568876  799999877 78999998875

Members of this family are the ycfN gene product of Escherichia coli, now identified as the salvage enzyme thiamine kinase (thiK), and additional proteobacterial homologs taken to be orthologs with equivalent function.

>PRK05231 homoserine kinase; Provisional

Probab=94.68  E-value=0.51  Score=39.83  Aligned_cols=27  Identities=30%  Similarity=0.329  Sum_probs=21.2

Q ss_pred             HhhcCC--CcEEECCCCcEEEeccCCcee
Q 039406          200 YLHDDL--ANILLDFKFEAKVADFGLAKI  226 (243)
Q Consensus       200 ~lH~~~--~NiLl~~~~~~kl~DFG~a~~  226 (243)
                      .+|.|.  .|||++.+...-|+||+.+..
T Consensus       189 liHgD~~~~Nil~~~~~~~~iIDf~~~~~  217 (319)
T PRK05231        189 VIHADLFRDNVLFEGDRLSGFIDFYFACN  217 (319)
T ss_pred             cCCCCCCCCcEEEECCceEEEEecccccC
Confidence            468875  799998665568999998854

>KOG2270 consensus Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning]

Probab=94.35  E-value=0.33  Score=42.15  Aligned_cols=93  Identities=15%  Similarity=0.162  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccCCCCH-HHHhccCCCCCCCHHH-------HHHHHHHHHHhhhH
Q 039406          129 EFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTL-VFHLHGKGQPTMDWPT-------RIKIALGSAKGLAY  200 (243)
Q Consensus       129 ~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~g~L-~~~l~~~~~~~l~~~~-------~~~i~~~i~~~l~~  200 (243)
                      +..+|++.|++|+.-.|.----+...  .-.|||+|+..... .-.|+   ...++...       .+.+++.+-+-...
T Consensus       212 WAEKE~RNLkRl~~aGIP~PePIlLk--~hVLVM~FlGrdgw~aPkLK---d~~ls~~ka~~~Y~~~v~~MR~lY~~c~L  286 (520)
T KOG2270|consen  212 WAEKEMRNLKRLNNAGIPCPEPILLK--NHVLVMEFLGRDGWAAPKLK---DASLSTSKARELYQQCVRIMRRLYQKCRL  286 (520)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCceeee--cceEeeeeccCCCCcCcccc---cccCChHHHHHHHHHHHHHHHHHHHHhce
Confidence            34678999999875554322222222  34699999943111 11121   11244333       33444445555555


Q ss_pred             hhcCCC--cEEECCCCcEEEeccCCceec
Q 039406          201 LHDDLA--NILLDFKFEAKVADFGLAKIA  227 (243)
Q Consensus       201 lH~~~~--NiLl~~~~~~kl~DFG~a~~~  227 (243)
                      +|.|++  |+|+- +|.+.|+|.+-+...
T Consensus       287 VHADLSEfN~Lyh-dG~lyiIDVSQSVE~  314 (520)
T KOG2270|consen  287 VHADLSEFNLLYH-DGKLYIIDVSQSVEH  314 (520)
T ss_pred             eccchhhhhheEE-CCEEEEEEccccccC
Confidence            688885  98885 788999998876644

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=93.96  E-value=0.21  Score=48.89  Aligned_cols=104  Identities=23%  Similarity=0.240  Sum_probs=75.2

Q ss_pred             hHHHHHHHHHHHHhcCCCccceEEEEEEeCCe----eEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHh
Q 039406          126 GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQ----RMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL  201 (243)
Q Consensus       126 ~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~----~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~l  201 (243)
                      .......|++.+.++.|+|++.++.|......    ..+..|+|..-++...+...+  ..+....+.+..+++.||.|+
T Consensus       225 ~i~~~E~e~~~l~k~~~~n~~~~~~~~le~~~~g~~~~v~~~~~s~~~~~~~~q~v~--~i~~~~~r~~~~~~~~GL~~~  302 (1351)
T KOG1035|consen  225 EIQTTEIELESLSKIAHDNLGGYFVYGLERLFRGIVLDVLQEICSKVELRSLLQSVG--SIPLETLRILHQKLLEGLAYL  302 (1351)
T ss_pred             HHHHHHHHHHHHHhhccccccceeEEeehhhcchHHHHHHHhhcCccchHHHHhhcc--ccCHHHHHHHHHHHhhhHHHH
Confidence            34445567788889999999999988764332    334557888888888776554  477788889999999999999


Q ss_pred             hc-CCCcEEE----------CCCCcEEEe--ccCCceecCCCC
Q 039406          202 HD-DLANILL----------DFKFEAKVA--DFGLAKIASDVN  231 (243)
Q Consensus       202 H~-~~~NiLl----------~~~~~~kl~--DFG~a~~~~~~~  231 (243)
                      |. ...|+.+          +..+.+.+.  ||+..+.+.+..
T Consensus       303 h~~~l~~v~L~~s~~~~~~~~~e~~~~~sl~~~~ss~~l~d~~  345 (1351)
T KOG1035|consen  303 HSLSLEHVVLSASSSKESTVDGEGVVAISLSDFDSSKPLPDNE  345 (1351)
T ss_pred             HHhccceeEEecccccccccCccceeecchhhhcccccCCCcc
Confidence            98 4455555          334556666  888888765543

>PF07387 Seadorna_VP7: Seadornavirus VP7; InterPro: IPR009973 This family consists of several Seadornavirus specific VP7 proteins of around 305 residues in length

Probab=93.33  E-value=0.23  Score=40.07  Aligned_cols=79  Identities=18%  Similarity=0.132  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhh-------
Q 039406          127 EREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLA-------  199 (243)
Q Consensus       127 ~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~-------  199 (243)
                      ...|.++..++.++.  .|+++..-  ..-.+-+++|+|-....           ..    ..++..-+.+|.       
T Consensus       102 ~~~y~nky~v~Armh--GilrL~ND--n~~~yGvIlE~Cy~~~i-----------~~----~N~i~agi~~L~~fH~~~~  162 (308)
T PF07387_consen  102 DALYFNKYRVFARMH--GILRLKND--NNYKYGVILERCYKIKI-----------NF----SNFITAGIKDLMDFHSENQ  162 (308)
T ss_pred             hhhhhhhhhHHHHhh--heeEeecC--CCceeEEEEeeccCccc-----------ch----hHHHHHhHHHHHHhhccCC
Confidence            345677888888775  56666522  22346699999843211           10    011111123333       


Q ss_pred             -HhhcC--CCcEEECCCCcEEEeccCCc
Q 039406          200 -YLHDD--LANILLDFKFEAKVADFGLA  224 (243)
Q Consensus       200 -~lH~~--~~NiLl~~~~~~kl~DFG~a  224 (243)
                       +||.|  |+||+-|..|.+||.|=+..
T Consensus       163 ~~lHGD~np~NiM~D~~G~lKlVDP~~L  190 (308)
T PF07387_consen  163 HCLHGDCNPDNIMCDKFGYLKLVDPVCL  190 (308)
T ss_pred             CeecCCCChhheeecCCCCEEecChhhh
Confidence             34554  58999999999999997743

The function of this family is unknown.

>COG3173 Predicted aminoglycoside phosphotransferase [General function prediction only]

Probab=93.07  E-value=0.77  Score=39.04  Aligned_cols=45  Identities=16%  Similarity=0.238  Sum_probs=29.0

Q ss_pred             hHHHHHHHHHHHHhcCC--CccceEEEEEEeCC--eeEEEEeccCCCCH
Q 039406          126 GEREFQAEVEIISRVHH--KHLVSLVGYYTAGS--QRMLVYEFVLNNTL  170 (243)
Q Consensus       126 ~~~~~~~E~~~l~~l~h--p~iv~~~~~~~~~~--~~~lv~e~~~~g~L  170 (243)
                      ......+|+++|+.+.-  --+-..+++|.++.  ..|.||+|++|..+
T Consensus        64 ~~~~~~re~~~i~~l~~~~vP~p~~~~~~~~~~~g~pf~v~~~veGe~~  112 (321)
T COG3173          64 SAHDEKREYRVIAALLDVDVPVPRAFGLCGEGYLGTPFYVMEWVEGEVV  112 (321)
T ss_pred             hhhHHHhHHHHHHHhcCCCCCCcccccccccCCCCCceEEEEEecceec
Confidence            34556778888887743  22334455555544  67999999988533

>PLN02236 choline kinase

Probab=92.51  E-value=0.57  Score=40.28  Aligned_cols=29  Identities=28%  Similarity=0.515  Sum_probs=23.1

Q ss_pred             hHhhcCC--CcEEECC-CCcEEEeccCCceec
Q 039406          199 AYLHDDL--ANILLDF-KFEAKVADFGLAKIA  227 (243)
Q Consensus       199 ~~lH~~~--~NiLl~~-~~~~kl~DFG~a~~~  227 (243)
                      .++|+|+  .|||+++ ++.++|+||..|..-
T Consensus       201 ~~cH~Dl~~~Nil~~~~~~~~~lID~Eya~~~  232 (344)
T PLN02236        201 GFCHNDLQYGNIMIDEETRAITIIDYEYASYN  232 (344)
T ss_pred             eEEeCCCCcCcEEEeCCCCcEEEEeehhcccc
Confidence            3468876  7999986 478999999998753

>PHA00451 protein kinase

Probab=92.51  E-value=0.066  Score=43.74  Aligned_cols=117  Identities=15%  Similarity=0.131  Sum_probs=64.5

Q ss_pred             ceeeecCceEEEEEEecCCchhHHHHHHH-----HHHHHhc--CCCccceEEEEEEeCCeeEEEEeccCC-----CC---
Q 039406          105 NLLRQDGFGYVHRGVLPNGKEGEREFQAE-----VEIISRV--HHKHLVSLVGYYTAGSQRMLVYEFVLN-----NT---  169 (243)
Q Consensus       105 ~~lg~G~~g~V~~~~~~~~~~~~~~~~~E-----~~~l~~l--~hp~iv~~~~~~~~~~~~~lv~e~~~~-----g~---  169 (243)
                      ++||.|-|+..|.-.+-.+....-.|.+|     .....++  ..+.|..+|.+-...+.+-+|++++.-     .+   
T Consensus        71 ~~LGNGHFSAAy~H~lLPgrVIKVGFKKEDSGAAYtAFCRM~QGR~GIPnVY~VaRHaGCYTVVLD~L~~C~r~~nd~h~  150 (362)
T PHA00451         71 NLLGNGHFSAAYSHELLPGRVIKVGFKKEDSGAAYTAFCRMHQGRAGIPNVYHVARHAGCYTVVLDYLNPCYRESNDVHH  150 (362)
T ss_pred             HHhcCcchhhHhhcccCCCeeEEeccccccccHHHHHHHHHhcCCCCCccHHHHHHhcCceEEehhhccccccccchHHH
Confidence            58999999887765433333222222222     2233444  356777777766666777788887632     11   


Q ss_pred             ----HHHHhccCC-------CCCCCHHHHHHHHHHHHHhhhHhhcCCCcEEECCCCcEEEecc
Q 039406          170 ----LVFHLHGKG-------QPTMDWPTRIKIALGSAKGLAYLHDDLANILLDFKFEAKVADF  221 (243)
Q Consensus       170 ----L~~~l~~~~-------~~~l~~~~~~~i~~~i~~~l~~lH~~~~NiLl~~~~~~kl~DF  221 (243)
                          +..++.+..       ...-...+.+..+.....|+.-.--...||+++++|...|+|=
T Consensus       151 ~ya~~a~~~~e~~~d~~~~~~~~~~FIETCk~IRkFF~GIASFDmHSGNiMf~~~g~p~ITDP  213 (362)
T PHA00451        151 HYAAAAYIIIECCSDAAEEYPGSQEFIETCKMIRKFFYGIASFDMHSGNIMFDQDGVPYITDP  213 (362)
T ss_pred             HHHHHHHHHHhccCCHHhccCCchhHHHHHHHHHHHHhhhhcccccCCceeeCCCCCeEecCC
Confidence                111111110       0011223344455555555554433457999999999999993

>cd00891 PI3Kc Phosphoinositide 3-kinase (PI3K), catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=91.72  E-value=2.8  Score=36.21  Aligned_cols=22  Identities=27%  Similarity=0.156  Sum_probs=19.6

Q ss_pred             cCCCcEEECCCCcEEEeccCCc
Q 039406          203 DDLANILLDFKFEAKVADFGLA  224 (243)
Q Consensus       203 ~~~~NiLl~~~~~~kl~DFG~a  224 (243)
                      |..+||||+.+|++-=+|||+.
T Consensus       210 RH~~NILi~~~G~~~HIDFG~i  231 (352)
T cd00891         210 RHNDNIMLTKTGHLFHIDFGHF  231 (352)
T ss_pred             cCCCceEECCCCCEEEEehHHh
Confidence            3568999999999999999975

PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms c

>PF01633 Choline_kinase: Choline/ethanolamine kinase; InterPro: IPR002573 Choline kinase, (ATP:choline phosphotransferase, 2

Probab=91.56  E-value=0.25  Score=39.17  Aligned_cols=29  Identities=41%  Similarity=0.613  Sum_probs=19.8

Q ss_pred             hhHhhcCC--CcEEE-CCCCcEEEeccCCcee
Q 039406          198 LAYLHDDL--ANILL-DFKFEAKVADFGLAKI  226 (243)
Q Consensus       198 l~~lH~~~--~NiLl-~~~~~~kl~DFG~a~~  226 (243)
                      +.++|.|+  .|||+ +.++.++|+||-.|..
T Consensus       143 ~v~cHnDl~~~Nil~~~~~~~~~lIDfEya~~  174 (211)
T PF01633_consen  143 LVFCHNDLNPGNILINNKDGEVKLIDFEYAGY  174 (211)
T ss_dssp             EEEE-S--SGGGEEETSSSSCEEE--GTT-EE
T ss_pred             ceEeeccCccccEEeccCCCeEEEecHHHHhh
Confidence            56779987  79999 8889999999999875

7.1.32 from EC) belongs to the choline/ethanolamine kinase family. Ethanolamine and choline are major membrane phospholipids, in the form of glycerophosphoethanolamine and glycerophosphocholine. Ethanolamine is also a component of the glycosylphosphatidylinositol (GPI) anchor, which is necessary for cell-surface protein attachment []. The de novo synthesis of these phospholipids begins with the creation of phosphoethanolamine and phosphocholine by ethanolamine and choline kinases in the first step of the CDP-ethanolamine pathway [, ]. There are two putative choline/ethanolamine kinases (C/EKs) in the Trypanosoma brucei genome. Ethanolamine kinase has no choline kinase activity [] and its activity is inhibited by ADP []. Inositol supplementation represses ethanolamine kinase, decreasing the incorporation of ethanolamine into the CDP-ethanolamine pathway and into phosphatidylethanolamine and phosphatidylcholine []. ; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 3C5I_A 2IG7_A 3LQ3_A 3FEG_A 2QG7_E 3FI8_A 1NW1_A 3MES_A 3G15_A 2CKP_B ....

>cd05165 PI3Kc_I Phosphoinositide 3-kinase (PI3K), class I, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=91.10  E-value=2.9  Score=36.31  Aligned_cols=23  Identities=22%  Similarity=0.127  Sum_probs=20.1

Q ss_pred             cCCCcEEECCCCcEEEeccCCce
Q 039406          203 DDLANILLDFKFEAKVADFGLAK  225 (243)
Q Consensus       203 ~~~~NiLl~~~~~~kl~DFG~a~  225 (243)
                      |..+||||+.+|++-=+|||+.-
T Consensus       219 RH~~NILi~~~G~l~HIDFG~il  241 (366)
T cd05165         219 RHNDNIMVKETGQLFHIDFGHIL  241 (366)
T ss_pred             cCCcceEEcCCCCEEEEehHHhh
Confidence            35789999999999999999864

PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. In vitro, they can also phosphorylate the substrates P

>cd05166 PI3Kc_II Phosphoinositide 3-kinase (PI3K), class II, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=91.06  E-value=4.6  Score=34.91  Aligned_cols=22  Identities=27%  Similarity=0.161  Sum_probs=19.4

Q ss_pred             cCCCcEEECCCCcEEEeccCCc
Q 039406          203 DDLANILLDFKFEAKVADFGLA  224 (243)
Q Consensus       203 ~~~~NiLl~~~~~~kl~DFG~a  224 (243)
                      |..+||||+.+|++-=+|||+.
T Consensus       209 RH~~NILl~~~G~l~HIDFG~~  230 (353)
T cd05166         209 RHNDNIMLTKSGHMFHIDFGKF  230 (353)
T ss_pred             cCCCceEECCCCCEEEEeeHHh
Confidence            3568999999999999999975

PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not associate with any

>cd05152 MPH2' Macrolide 2'-Phosphotransferase (MPH2')

Probab=90.87  E-value=1.4  Score=36.66  Aligned_cols=27  Identities=33%  Similarity=0.527  Sum_probs=20.6

Q ss_pred             hhcCC--CcEEECCCCc-EEEeccCCceec
Q 039406          201 LHDDL--ANILLDFKFE-AKVADFGLAKIA  227 (243)
Q Consensus       201 lH~~~--~NiLl~~~~~-~kl~DFG~a~~~  227 (243)
                      +|.|.  .|||++.+++ .-|+||+.+..-
T Consensus       188 vHGD~~~~Nilv~~~~~~~gviDWe~a~iG  217 (276)
T cd05152         188 VHGDLHPGHILIDEDARVTGLIDWTEAKVG  217 (276)
T ss_pred             EeCCCCCCcEEEeCCCCEEEEECcHhcccC
Confidence            47764  7999997565 469999998764

MPH2' is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). MPH2' catalyzes the transfer of the gamma-phosphoryl group from ATP to the 2'-hydroxyl of macrolide antibiotics such as erythromycin, clarithromycin, and azithromycin, among others. Macrolides penetrate the bacterial cell and bind to ribosomes, where it interrupts protein elongation, leading ultimately to the demise of the bacterium. Phosphorylation of macrolides leads to their inactivation. Based on substrate specificity and amino acid sequence, MPH2' is divided into types I and II, encoded by mphA and mphB genes, respectively. MPH2'I inactivates 14-membered ring macrolides while MPH2'II inactivates both 14- and 16-membered ring macrolides. Enzymatic inactivation of macrolides has been reported

>cd05177 PI3Kc_C2_gamma Phosphoinositide 3-kinase (PI3K), class II, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=90.37  E-value=6.1  Score=34.15  Aligned_cols=23  Identities=26%  Similarity=0.170  Sum_probs=20.2

Q ss_pred             cCCCcEEECCCCcEEEeccCCce
Q 039406          203 DDLANILLDFKFEAKVADFGLAK  225 (243)
Q Consensus       203 ~~~~NiLl~~~~~~kl~DFG~a~  225 (243)
                      |..+||||+.+|++-=+|||+.-
T Consensus       210 RHn~NILi~~~G~~~HIDFG~il  232 (354)
T cd05177         210 RHNDNIMLTHSGHMFHIDFGKFL  232 (354)
T ss_pred             cCCCceeEcCCCCEEEEehHHhc
Confidence            35689999999999999999874

PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n

>cd05176 PI3Kc_C2_alpha Phosphoinositide 3-kinase (PI3K), class II, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=90.12  E-value=6.7  Score=33.84  Aligned_cols=23  Identities=26%  Similarity=0.127  Sum_probs=20.0

Q ss_pred             cCCCcEEECCCCcEEEeccCCce
Q 039406          203 DDLANILLDFKFEAKVADFGLAK  225 (243)
Q Consensus       203 ~~~~NiLl~~~~~~kl~DFG~a~  225 (243)
                      |..+||||+.+|++-=+|||+.-
T Consensus       209 RHn~NILi~~~Ghl~HIDFG~il  231 (353)
T cd05176         209 RHNDNIMLRSTGHMFHIDFGKFL  231 (353)
T ss_pred             cCCcceEEcCCCCEEEEeeHHhc
Confidence            35689999999999999999863

PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n

>PRK10271 thiK thiamine kinase; Provisional

Probab=89.76  E-value=0.24  Score=38.67  Aligned_cols=28  Identities=25%  Similarity=0.250  Sum_probs=22.8

Q ss_pred             hHhhcCC--CcEEECCCCcEEEeccCCceec
Q 039406          199 AYLHDDL--ANILLDFKFEAKVADFGLAKIA  227 (243)
Q Consensus       199 ~~lH~~~--~NiLl~~~~~~kl~DFG~a~~~  227 (243)
                      .-||.|+  +||++++++ ++|+||+.|..-
T Consensus        78 ~p~H~D~~~~N~~~~~~~-~~lIDwe~a~~g  107 (188)
T PRK10271         78 APLHMDVHAGNLVHSASG-LRLIDWEYAGDG  107 (188)
T ss_pred             eeecCCCCCccEEEECCC-EEEEeCCcccCC
Confidence            3469976  899998777 999999998653

>cd05167 PI4Kc_III_alpha Phosphoinositide 4-kinase (PI4K), Type III, alpha isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=88.94  E-value=4.9  Score=34.06  Aligned_cols=23  Identities=26%  Similarity=0.254  Sum_probs=20.2

Q ss_pred             cCCCcEEECCCCcEEEeccCCce
Q 039406          203 DDLANILLDFKFEAKVADFGLAK  225 (243)
Q Consensus       203 ~~~~NiLl~~~~~~kl~DFG~a~  225 (243)
                      |..+||||+.+|++-=+|||+.-
T Consensus       167 RHn~NILid~~G~l~HIDFG~il  189 (311)
T cd05167         167 RHNGNIMIDDDGHIIHIDFGFIF  189 (311)
T ss_pred             cCccceEEcCCCCEEEEeeHHhh
Confidence            35689999999999999999864

PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIalpha is a 220 kDa protein found in the plasma membrane and the endoplasmic reticulum (ER). The role of PI4KIIIalpha in the ER remains unclear. In the plasma membrane, it provides PtdIns(4)P, which is then converted by PI5Ks to PtdIns(4,5)P2, an important signaling mole

>cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes

Probab=88.80  E-value=0.49  Score=39.61  Aligned_cols=30  Identities=33%  Similarity=0.439  Sum_probs=24.3

Q ss_pred             hhHhhcCC--CcEEECCC----CcEEEeccCCceec
Q 039406          198 LAYLHDDL--ANILLDFK----FEAKVADFGLAKIA  227 (243)
Q Consensus       198 l~~lH~~~--~NiLl~~~----~~~kl~DFG~a~~~  227 (243)
                      +.+||.|+  .|||++.+    +.++|+||..|..-
T Consensus       179 ~~lcH~Dl~~~Nil~~~~~~~~~~i~lIDwEya~~~  214 (302)
T cd05156         179 VVFCHNDLQEGNILLLNPSSETKKLVLIDFEYASYN  214 (302)
T ss_pred             ceEEecCCCcCeEEecCCCCCCCcEEEEeeCCCCCC
Confidence            34578876  79999875    88999999998753

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer

>COG4248 Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains [General function prediction only]

Probab=88.61  E-value=3.7  Score=36.49  Aligned_cols=65  Identities=15%  Similarity=0.210  Sum_probs=47.3

Q ss_pred             eEEEEeccCCCC-HHHHhcc----CCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccC
Q 039406          158 RMLVYEFVLNNT-LVFHLHG----KGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFG  222 (243)
Q Consensus       158 ~~lv~e~~~~g~-L~~~l~~----~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG  222 (243)
                      +-++|..+.+.. +.+++..    .......|...+..++.++.+..-||.        +.+|+|+.+++.|.|+|=.
T Consensus        85 iGflmP~v~g~~pI~~~y~p~tRRqs~P~~~w~fllrvaRnlA~aFA~lH~~Gh~vGDVn~~~~lVsd~~~V~LVdsD  162 (637)
T COG4248          85 IGFLMPKVSGKEPIHMIYSPATRRQSYPHCAWDFLLRVARNLASAFATLHEHGHVVGDVNQNSFLVSDDSKVVLVDSD  162 (637)
T ss_pred             eEEecccCCCccchhhhcCchhhcccCCccccHHHHHHHHHHHHHHHHHHhcCCcccccCccceeeecCceEEEEccc
Confidence            678888886642 2333321    122346899999999999999999987        3489999988888888743

>PRK09550 mtnK methylthioribose kinase; Reviewed

Probab=88.33  E-value=4.7  Score=35.48  Aligned_cols=64  Identities=14%  Similarity=0.099  Sum_probs=45.4

Q ss_pred             cceeeecCceEEEEEEecCCc-h-------------------hHHHHHHHHHHHHhcC---CCccceEEEEEEeCCeeEE
Q 039406          104 ANLLRQDGFGYVHRGVLPNGK-E-------------------GEREFQAEVEIISRVH---HKHLVSLVGYYTAGSQRML  160 (243)
Q Consensus       104 ~~~lg~G~~g~V~~~~~~~~~-~-------------------~~~~~~~E~~~l~~l~---hp~iv~~~~~~~~~~~~~l  160 (243)
                      .+.||.|.+..||++....+. .                   ..++...|.+.|+.+.   ..++.+++.+  +....++
T Consensus        31 ~~elggGn~N~VyrV~~~~g~~svIVKqa~p~~r~~g~~wpl~~eR~~~Eae~L~~l~~~~p~~VPkV~~~--D~~~~~l  108 (401)
T PRK09550         31 AREIGDGNLNLVFRVSDTEGGKSVIVKQALPYVRVVGESWPLTLDRARIEAEALKIQAKYVPDLVPKVYHY--DEELAVT  108 (401)
T ss_pred             eeEcCCCceEEEEEEEeCCCCeEEEEEecCcccccccccccccHHHHHHHHHHHHHHHhhCCCCCCeEEEE--CCCCCEE
Confidence            467899999999998765531 0                   2345677888888763   3467778776  4456789


Q ss_pred             EEeccCCCC
Q 039406          161 VYEFVLNNT  169 (243)
Q Consensus       161 v~e~~~~g~  169 (243)
                      ||||+++..
T Consensus       109 VME~L~~~~  117 (401)
T PRK09550        109 VMEDLSDHK  117 (401)
T ss_pred             EEecCCCcc
Confidence            999997643

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=87.80  E-value=0.27  Score=43.85  Aligned_cols=60  Identities=18%  Similarity=0.297  Sum_probs=47.1

Q ss_pred             HHHHhCCCCccceeeecCceEEEEEEecCCc--------------hhHHHHHHHHHHHHhcCCCccceEEEEEE
Q 039406           94 LARATDGFSDANLLRQDGFGYVHRGVLPNGK--------------EGEREFQAEVEIISRVHHKHLVSLVGYYT  153 (243)
Q Consensus        94 ~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~--------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~  153 (243)
                      +.+..++|+.+..+|.|+||+|+.+....+.              ....+..+|...+..+.|++++++...|.
T Consensus        44 ~sr~a~~~e~~~~~~~~g~~~~~~~~n~~d~~~~avkritlkn~e~s~~rvl~~~~s~a~feh~g~~~~~ha~~  117 (516)
T KOG1033|consen   44 TSREANDFEPGQCLGRGGFGVVFSAQNKADENKYAVKRITLKNREESRSRVLREVSSLAEFEHPGIKRYFHAWY  117 (516)
T ss_pred             hhhhhccccccccccccCccccCCccccccchhhHHHHhcccchhhhhhhhhccccchhhhcccchhhheecee
Confidence            4555689999999999999999998755543              23455677888888999999999866554

>KOG4720 consensus Ethanolamine kinase [Lipid transport and metabolism]

Probab=87.80  E-value=0.94  Score=38.06  Aligned_cols=37  Identities=32%  Similarity=0.461  Sum_probs=27.9

Q ss_pred             HHHHHHHHhcC-CCccceEEEEEEeCCeeEEEEeccCCCCHH
Q 039406          131 QAEVEIISRVH-HKHLVSLVGYYTAGSQRMLVYEFVLNNTLV  171 (243)
Q Consensus       131 ~~E~~~l~~l~-hp~iv~~~~~~~~~~~~~lv~e~~~~g~L~  171 (243)
                      .+|+...+.|+ |-.-.+||+.|..+    ||+||++|.+|.
T Consensus       126 e~Ev~afk~L~a~G~ap~Ly~tF~NG----Lvyefi~g~tL~  163 (391)
T KOG4720|consen  126 ENEVIAFKLLAAYGFAPKLYGTFNNG----LVYEFIQGKTLE  163 (391)
T ss_pred             HHHHHHHHHHHHcCcChhhhheecCc----eEEeeecCcccC
Confidence            45666667664 77778888887764    899999987774

>cd00892 PIKKc_ATR ATR (Ataxia telangiectasia and Rad3-related), catalytic domain; The ATR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=86.68  E-value=10  Score=30.83  Aligned_cols=24  Identities=25%  Similarity=0.110  Sum_probs=20.5

Q ss_pred             cCCCcEEECC-CCcEEEeccCCcee
Q 039406          203 DDLANILLDF-KFEAKVADFGLAKI  226 (243)
Q Consensus       203 ~~~~NiLl~~-~~~~kl~DFG~a~~  226 (243)
                      |.++|||++. +|++.-+|||.+--
T Consensus       146 Rh~~NIli~~~tG~~~HIDfg~~~~  170 (237)
T cd00892         146 RHGENILFDSNTGDVVHVDFNCLFD  170 (237)
T ss_pred             CCcccEEEEcCCCcEEEEehHhhhc
Confidence            4689999997 89999999997643

ATR is also referred to as Mei-41 (Drosophila), Esr1/Mec1p (Saccharomyces cerevisiae), Rad3 (Schizosaccharomyces pombe), and FRAP-related protein (human). ATR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATR contains a UME domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. Together with its downstream effector kinase, Chk1, ATR plays a central

>cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes

Probab=86.08  E-value=3  Score=33.32  Aligned_cols=37  Identities=24%  Similarity=0.348  Sum_probs=24.1

Q ss_pred             HHHHHHHHhcCC-CccceEEEEEEeCCeeEEEEeccCCCCHH
Q 039406          131 QAEVEIISRVHH-KHLVSLVGYYTAGSQRMLVYEFVLNNTLV  171 (243)
Q Consensus       131 ~~E~~~l~~l~h-p~iv~~~~~~~~~~~~~lv~e~~~~g~L~  171 (243)
                      .+|+.+++.+.. .-..+++..+.  +  .+||||++|.++.
T Consensus        43 ~~E~~~~~~l~~~gl~P~v~~~~~--~--~~l~e~i~G~~l~   80 (235)
T cd05157          43 ERELRIHKLLSKHGLAPKLYATFQ--N--GLIYEFIPGRTLE   80 (235)
T ss_pred             HHHHHHHHHHHhCCCCCeEEEEeC--C--cEEEEeeCCCcCC
Confidence            478888888843 33455554432  2  4899999986653

ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo

>cd05164 PIKKc Phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily, catalytic domain; The PIKK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=85.85  E-value=9.3  Score=30.68  Aligned_cols=24  Identities=38%  Similarity=0.335  Sum_probs=20.3

Q ss_pred             cCCCcEEECC-CCcEEEeccCCcee
Q 039406          203 DDLANILLDF-KFEAKVADFGLAKI  226 (243)
Q Consensus       203 ~~~~NiLl~~-~~~~kl~DFG~a~~  226 (243)
                      |.++|||++. +|++.=+|||++--
T Consensus       138 Rh~~NIli~~~tG~v~hIDf~~~~~  162 (222)
T cd05164         138 RHLDNILIDRETGEVVHIDFGCIFE  162 (222)
T ss_pred             CCCceEEEECCCCcEEEEccHHhhc
Confidence            4689999998 89999999998643

Members include ATM (Ataxia telangiectasia mutated), ATR (Ataxia telangiectasia and Rad3-related), TOR (Target of rapamycin), SMG-1 (Suppressor of morphogenetic effect on genitalia-1), and DNA-PK (DNA-dependent protein kinase). PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). They show strong preference for phosphorylating serine/threonine residues followed by a glutamine and are also referred to as (S/T)-Q-directed kinases. They all contain a FATC (FRAP, ATM and TRRAP, C-terminal) d

>cd00895 PI3Kc_C2_beta Phosphoinositide 3-kinase (PI3K), class II, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=85.72  E-value=17  Score=31.46  Aligned_cols=22  Identities=27%  Similarity=0.184  Sum_probs=19.4

Q ss_pred             cCCCcEEECCCCcEEEeccCCc
Q 039406          203 DDLANILLDFKFEAKVADFGLA  224 (243)
Q Consensus       203 ~~~~NiLl~~~~~~kl~DFG~a  224 (243)
                      |..+||||+.+|++-=+|||+.
T Consensus       210 RHndNImi~~~GhlfHIDFG~i  231 (354)
T cd00895         210 RHNDNIMLKTTGHMFHIDFGRF  231 (354)
T ss_pred             cCCCceeEcCCCCEEEEeeHHh
Confidence            3568999999999999999975

PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not

>cd05175 PI3Kc_IA_alpha Phosphoinositide 3-kinase (PI3K), class IA, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=85.23  E-value=14  Score=32.11  Aligned_cols=23  Identities=22%  Similarity=0.122  Sum_probs=20.1

Q ss_pred             cCCCcEEECCCCcEEEeccCCce
Q 039406          203 DDLANILLDFKFEAKVADFGLAK  225 (243)
Q Consensus       203 ~~~~NiLl~~~~~~kl~DFG~a~  225 (243)
                      |..+||||+.+|++-=+|||+.-
T Consensus       218 RHndNImi~~~G~l~HIDFG~iL  240 (366)
T cd05175         218 RHNSNIMVKDDGQLFHIDFGHFL  240 (366)
T ss_pred             cCccceeEcCCCCEEEEehHHhh
Confidence            45789999999999999999864

PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and

>PF10140 YukC: WXG100 protein secretion system (Wss), protein YukC; InterPro: IPR018778 Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria

Probab=85.18  E-value=2.7  Score=36.32  Aligned_cols=81  Identities=11%  Similarity=0.179  Sum_probs=0.0

Q ss_pred             HHhcCCCccceEEEEEEeCCeeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc------CCCcEEE
Q 039406          137 ISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD------DLANILL  210 (243)
Q Consensus       137 l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~------~~~NiLl  210 (243)
                      +-...||+++.. .+-++++.+.+.++.-+.+.=...+..     ++....+.++.+|..=-.++|.      .|+||++
T Consensus        17 lL~~~~~~f~~~-~i~~~ed~~~~~y~~~~~~~~f~~i~~-----~~~~eklr~~~ni~~l~~~~~~~~~f~l~P~Nl~f   90 (359)
T PF10140_consen   17 LLKEHDPYFLPQ-EIEEDEDELTFTYQIPESYQSFEEIKK-----LDKSEKLRLLINIAALKEHLNSRYTFILHPENLVF   90 (359)
T ss_dssp             GGGS--TTB--E-EEEE-SSEEEEEE---TTSEEGGGGGG-----S-HHHHHHHHHHGGGGGGGGGSSEE---SGGGEEE
T ss_pred             HHhccCcccCCc-eEEEeCCEEEEEEEcCcccCcHHHHHh-----cCHHHHHHHHHHHHHHHHHhcCceeEEEechheEE


Q ss_pred             CCCCcEEEeccCC
Q 039406          211 DFKFEAKVADFGL  223 (243)
Q Consensus       211 ~~~~~~kl~DFG~  223 (243)
                      |.++.+++.-.|+
T Consensus        91 d~~~~p~i~hrGi  103 (359)
T PF10140_consen   91 DKNLMPKILHRGI  103 (359)
T ss_dssp             -TTS-EEES--EE
T ss_pred             cCCCCEEEEEcCC

This protein is designated YukC in Bacillus subtilis and EssB is Staphylococcus aureus. ; PDB: 4ANN_A.

>KOG3021 consensus Predicted kinase [General function prediction only]

Probab=84.84  E-value=2.3  Score=34.31  Aligned_cols=82  Identities=21%  Similarity=0.262  Sum_probs=0.0

Q ss_pred             HHHHHHHhCCCCccceeeecCceEEEEEEecCCch-----------hHHHHHHHHHHHHhcCCCccceE---EEEEEe-C
Q 039406           91 YEELARATDGFSDANLLRQDGFGYVHRGVLPNGKE-----------GEREFQAEVEIISRVHHKHLVSL---VGYYTA-G  155 (243)
Q Consensus        91 ~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~-----------~~~~~~~E~~~l~~l~hp~iv~~---~~~~~~-~  155 (243)
                      ++++.+..-+...++.+|.-+-|++-.++..++..           ..+.|.-|+.-|..+..-+.|++   +.+..- .
T Consensus         1 mee~l~ael~~~~vr~~gs~gggcI~~~r~ydtDaG~~FvK~nr~~~~~mfeGE~~sLeAi~sT~tv~vprpikvid~p~   80 (313)
T KOG3021|consen    1 MEELLRAELGLNNVRALGSVGGGCISDGRHYDTDAGKVFVKVNRSIARDMFEGELASLEAIQSTETVLVPRPIKVIDLPG   80 (313)
T ss_pred             ChHHHHHhcCcceeeeecCCCCceeccccccccCCccEEEEeccccchHHHhhHHHHHHHHHhcCceecCCceeeEecCC


Q ss_pred             CeeEEEEeccCCCCHHH
Q 039406          156 SQRMLVYEFVLNNTLVF  172 (243)
Q Consensus       156 ~~~~lv~e~~~~g~L~~  172 (243)
                      +..++|||+++-+.|..
T Consensus        81 Ggs~lime~idf~~lr~   97 (313)
T KOG3021|consen   81 GGSSLIMEHIDFQGLRS   97 (313)
T ss_pred             Cceeeeeehhhcccchh

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	243
3tl8_A	349	The Avrptob-Bak1 Complex Reveals Two Structurally S		9e-32
3uim_A	326	Structural Basis For The Impact Of Phosphorylation		2e-30
2nry_A	307	Crystal Structure Of Irak-4 Length = 307		6e-20
2nru_A	307	Crystal Structure Of Irak-4 Length = 307		1e-19
2qkw_B	321	Structural Basis For Activation Of Plant Immunity B		1e-19
3hgk_A	327	Crystal Structure Of Effect Protein Avrptob Complex		2e-19
2oib_A	301	Crystal Structure Of Irak4 Kinase Domain Apo Form L		2e-19
2o8y_A	298	Apo Irak4 Kinase Domain Length = 298		1e-18
3ppz_A	309	Crystal Structure Of Ctr1 Kinase Domain In Complex		2e-09
3p86_A	309	Crystal Structure Of Ctr1 Kinase Domain Mutant D676		3e-09
3kul_B	325	Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep		2e-07
3kul_A	325	Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep		2e-07
4f0f_A	287	Crystal Structure Of The Roco4 Kinase Domain Bound		2e-07
2rei_A	318	Kinase Domain Of Human Ephrin Type-a Receptor 7 (ep		2e-07
1k9a_A	450	Crystal Structure Analysis Of Full-Length Carboxyl-		1e-06
3d7t_A	269	Structural Basis For The Recognition Of C-Src By It		1e-06
1jpa_A	312	Crystal Structure Of Unphosphorylated Ephb2 Recepto		1e-06
1byg_A	278	Kinase Domain Of Human C-Terminal Src Kinase (Csk)		1e-06
3d7u_A	263	Structural Basis For The Recognition Of C-Src By It		1e-06
2qok_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		2e-06
3oez_A	286	Crystal Structure Of The L317i Mutant Of The Chicke		2e-06
1yi6_A	276	C-Term Tail Segment Of Human Tyrosine Kinase (258-5		2e-06
2h8h_A	535	Src Kinase In Complex With A Quinazoline Inhibitor		2e-06
3svv_A	286	Crystal Structure Of T338c C-Src Covalently Bound T		2e-06
2bdf_A	279	Src Kinase In Complex With Inhibitor Ap23451 Length		2e-06
2r2p_A	295	Kinase Domain Of Human Ephrin Type-A Receptor 5 (Ep		2e-06
1fmk_A	452	Crystal Structure Of Human Tyrosine-Protein Kinase		2e-06
1y57_A	452	Structure Of Unphosphorylated C-Src In Complex With		2e-06
3g6h_A	286	Src Thr338ile Inhibited In The Dfg-Asp-Out Conforma		2e-06
3dqw_A	286	C-Src Kinase Domain Thr338ile Mutant In Complex Wit		3e-06
2vwu_A	302	Ephb4 Kinase Domain Inhibitor Complex Length = 302		3e-06
3lxk_A	327	Structural And Thermodynamic Characterization Of Th		3e-06
4aw5_A	291	Complex Of The Ephb4 Kinase Domain With An Oxindole		3e-06
3geq_A	286	Structural Basis For The Chemical Rescue Of Src Kin		3e-06
2qq7_A	286	Crystal Structure Of Drug Resistant Src Kinase Doma		3e-06
3pjc_A	315	Crystal Structure Of Jak3 Complexed With A Potent A		3e-06
2oiq_A	286	Crystal Structure Of Chicken C-Src Kinase Domain In		3e-06
4hvd_A	314	Jak3 Kinase Domain In Complex With 2-cyclopropyl-5h		3e-06
3u4w_A	275	Src In Complex With Dna-Templated Macrocyclic Inhib		3e-06
3d7u_B	277	Structural Basis For The Recognition Of C-Src By It		3e-06
2hwo_A	286	Crystal Structure Of Src Kinase Domain In Complex W		3e-06
4e6d_A	298	Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex W		3e-06
2qoo_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		4e-06
2qoi_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		4e-06
3dzq_A	361	Human Epha3 Kinase Domain In Complex With Inhibitor		4e-06
2xyu_A	285	Crystal Structure Of Epha4 Kinase Domain In Complex		4e-06
2qod_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y602f		4e-06
2y6m_A	291	Crystal Structure Of Epha4 Kinase Domain Length = 2		4e-06
2qoc_A	344	Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp		4e-06
1ksw_A	452	Structure Of Human C-Src Tyrosine Kinase (Thr338gly		4e-06
4e4l_A	302	Jak1 Kinase (Jh1 Domain) In Complex With Compound 3		5e-06
2qof_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f		5e-06
2gsf_A	373	The Human Epha3 Receptor Tyrosine Kinase And Juxtam		5e-06
2qol_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596:y		5e-06
3eyg_A	290	Crystal Structures Of Jak1 And Jak2 Inhibitor Compl		5e-06
3fxx_A	371	Human Epha3 Kinase And Juxtamembrane Region Bound T		5e-06
1yol_A	283	Crystal Structure Of Src Kinase Domain In Complex W		6e-06
1yoj_A	283	Crystal Structure Of Src Kinase Domain Length = 283		6e-06
3sxr_A	268	Crystal Structure Of Bmx Non-Receptor Tyrosine Kina		6e-06
2ptk_A	453	Chicken Src Tyrosine Kinase Length = 453		8e-06
4e4m_A	302	Jak2 Kinase (Jh1 Domain) In Complex With Compound 3		8e-06
2w1i_A	326	Structure Determination Of Aurora Kinase In Complex		8e-06
3tjc_A	298	Co-Crystal Structure Of Jak2 With Thienopyridine 8		8e-06
4hge_A	300	Jak2 Kinase (Jh1 Domain) In Complex With Compound 8		8e-06
2b7a_A	293	The Structural Basis Of Janus Kinase 2 Inhibition B		8e-06
3lpb_A	295	Crystal Structure Of Jak2 Complexed With A Potent 2		9e-06
3io7_A	313	2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Sel		9e-06
3e62_A	293	Fragment Based Discovery Of Jak-2 Inhibitors Length		9e-06
3q32_A	301	Structure Of Janus Kinase 2 With A Pyrrolotriazine		9e-06
3jy9_A	311	Janus Kinase 2 Inhibitors Length = 311		9e-06
3ugc_A	295	Structural Basis Of Jak2 Inhibition By The Type Ii		9e-06
3rvg_A	303	Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido		9e-06
4aqc_A	301	Triazolopyridine-Based Inhibitor Of Janus Kinase 2		9e-06
2hen_A	286	Crystal Structure Of The Ephb2 Receptor Kinase Doma		9e-06
3kxz_A	287	The Complex Crystal Structure Of Lck With A Probe M		1e-05
2qon_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		1e-05
2pl0_A	289	Lck Bound To Imatinib Length = 289		1e-05
2zm1_A	285	Crystal Structure Of Imidazo Pyrazin 1 Bound To The		1e-05
3kmm_A	288	Structure Of Human Lck Kinase With A Small Molecule		1e-05
3s95_A	310	Crystal Structure Of The Human Limk1 Kinase Domain		1e-05
1yvj_A	290	Crystal Structure Of The Jak3 Kinase Domain In Comp		1e-05
1qpd_A	279	Structural Analysis Of The Lymphocyte-specific Kina		1e-05
3bys_A	277	Co-Crystal Structure Of Lck And Aminopyrimidine Ami		1e-05
2qob_A	344	Human Epha3 Kinase Domain, Base Structure Length =		1e-05
2ofv_A	277	Crystal Structure Of Aminoquinazoline 1 Bound To Lc		1e-05
1qpe_A	279	Structural Analysis Of The Lymphocyte-Specific Kina		1e-05
2og8_A	265	Crystal Structure Of Aminoquinazoline 36 Bound To L		1e-05
2ofu_A	273	X-Ray Crystal Structure Of 2-Aminopyrimidine Carbam		1e-05
3v5j_A	266	Crystal Structure Of Interleukin-2 Inducible T-Cell		1e-05
1sm2_A	264	Crystal Structure Of The Phosphorylated Interleukin		1e-05
3lck_A	271	The Kinase Domain Of Human Lymphocyte Kinase (Lck),		1e-05
4hct_A	269	Crystal Structure Of Itk In Complex With Compound 5		1e-05
3miy_A	266	X-Ray Crystal Structure Of Itk Complexed With Sunit		1e-05
2xa4_A	298	Inhibitors Of Jak2 Kinase Domain Length = 298		1e-05
2of2_A	271	Crystal Structure Of Furanopyrimidine 8 Bound To Lc		1e-05
3bym_A	272	X-Ray Co-Crystal Structure Aminobenzimidazole Triaz		1e-05
2qo7_A	373	Human Epha3 Kinase And Juxtamembrane Region, Dephos		2e-05
2hel_A	306	Crystal Structure Of A Mutant Epha4 Kinase Domain (		2e-05
3qgw_A	286	Crystal Structure Of Itk Kinase Bound To An Inhibit		2e-05
3oct_A	265	Crystal Structure Of Bruton's Tyrosine Kinase Mutan		2e-05
3c4c_A	280	B-Raf Kinase In Complex With Plx4720 Length = 280		2e-05
4eqm_A	294	Structural Analysis Of Staphylococcus Aureus Serine		2e-05
2zv7_A	279	Lyn Tyrosine Kinase Domain, Apo Form Length = 279		2e-05
1qcf_A	454	Crystal Structure Of Hck In Complex With A Src Fami		3e-05
2hk5_A	270	Hck Kinase In Complex With Lck Targetted Inhibitor		3e-05
3k54_A	283	Structures Of Human Bruton's Tyrosine Kinase In Act		3e-05
3gen_A	283	The 1.6 A Crystal Structure Of Human Bruton's Tyros		3e-05
4bbe_A	298	Aminoalkylpyrimidine Inhibitor Complexes With Jak2		3e-05
3p08_A	267	Crystal Structure Of The Human Btk Kinase Domain Le		3e-05
3pix_A	274	Crystal Structure Of Btk Kinase Domain Complexed Wi		3e-05
3ocs_A	271	Crystal Structure Of Bruton's Tyrosine Kinase In Co		3e-05
1k2p_A	263	Crystal Structure Of Bruton's Tyrosine Kinase Domai		4e-05
4aoj_A	329	Human Trka In Complex With The Inhibitor Az-23 Leng		4e-05
3mpm_A	267	Lck Complexed With A Pyrazolopyrimidine Length = 26		4e-05
1uwh_A	276	The Complex Of Wild Type B-Raf And Bay439006 Length		4e-05
4f0i_A	300	Crystal Structure Of Apo Trka Length = 300		5e-05
4gt5_A	306	Crystal Structure Of The Inactive Trka Kinase Domai		5e-05
3lmg_A	344	Crystal Structure Of The Erbb3 Kinase Domain In Com		5e-05
3kex_A	325	Crystal Structure Of The Catalytically Inactive Kin		6e-05
2dq7_X	283	Crystal Structure Of Fyn Kinase Domain Complexed Wi		6e-05
3a4o_X	286	Lyn Kinase Domain Length = 286		7e-05
4asz_A	299	Crystal Structure Of Apo Trkb Kinase Domain Length		7e-05
2r4b_A	321	Erbb4 Kinase Domain Complexed With A Thienopyrimidi		8e-05
1ad5_A	438	Src Family Kinase Hck-Amp-Pnp Complex Length = 438		9e-05
3d4q_A	307	Pyrazole-Based Inhibitors Of B-Raf Kinase Length =		1e-04
3bbt_B	328	Crystal Structure Of The Erbb4 Kinase In Complex Wi		1e-04
3ii5_A	306	The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimi		1e-04
2fb8_A	281	Structure Of The B-Raf Kinase Domain Bound To Sb-59		1e-04
4dbn_A	284	Crystal Structure Of The Kinase Domain Of Human B-R		1e-04
3v5q_A	297	Discovery Of A Selective Trk Inhibitor With Efficac		1e-04
3q96_A	282	B-Raf Kinase Domain In Complex With A Tetrahydronap		1e-04
4h58_A	275	Braf In Complex With Compound 3 Length = 275		2e-04
1ir3_A	306	Phosphorylated Insulin Receptor Tyrosine Kinase In		2e-04
1i44_A	306	Crystallographic Studies Of An Activation Loop Muta		2e-04
1irk_A	306	Crystal Structure Of The Tyrosine Kinase Domain Of		2e-04
3a60_A	327	Crystal Structure Of Unphosphorylated P70s6k1 (Form		2e-04
3a62_A	327	Crystal Structure Of Phosphorylated P70s6k1 Length		2e-04
4e1z_A	291	Structure Of Mouse Tyk-2 Complexed To A 3-Aminoinda		2e-04
4e20_A	290	Structure Of Mouse Tyk-2 Complexed To A 3-Aminoinda		3e-04
2oo8_X	317	Synthesis, Structural Analysis, And Sar Studies Of		3e-04
4fl2_A	636	Structural And Biophysical Characterization Of The		3e-04
4fl3_A	635	Structural And Biophysical Characterization Of The		3e-04
1fvr_A	327	Tie2 Kinase Domain Length = 327		3e-04
1mqb_A	333	Crystal Structure Of Ephrin A2 (Epha2) Receptor Pro		3e-04
3srv_A	277	Crystal Structure Of Spleen Tyrosine Kinase (Syk) I		4e-04
1rqq_A	306	Crystal Structure Of The Insulin Receptor Kinase In		4e-04
1xba_A	291	Crystal Structure Of Apo Syk Tyrosine Kinase Domain		4e-04
3tub_A	293	Crystal Structure Of Syk Kinase Domain With 1-(5-(6		4e-04
3vf8_A	299	Crystal Structure Of Spleen Tyrosine Kinase Syk Cat		4e-04
2j4z_A	306	Structure Of Aurora-2 In Complex With Pha-680626 Le		4e-04
2bmc_A	306	Aurora-2 T287d T288d Complexed With Pha-680632 Leng		4e-04
3srv_B	277	Crystal Structure Of Spleen Tyrosine Kinase (Syk) I		4e-04
3emg_A	291	Discovery And Sar Of Novel 4-Thiazolyl-2- Phenylami		4e-04
2ogv_A	317	Crystal Structure Of The Autoinhibited Human C-Fms		4e-04
4f4p_A	273	Syk In Complex With Ligand Lasw836 Length = 273		5e-04
2dwb_A	285	Aurora-A Kinase Complexed With Amppnp Length = 285		5e-04
3lcd_A	329	Inhibitor Bound To A Dfg-In Structure Of The Kinase		5e-04
3eta_A	317	Kinase Domain Of Insulin Receptor Complexed With A		5e-04
4g9r_A	307	B-Raf V600e Kinase Domain Bound To A Type Ii Dihydr		5e-04
4dfl_A	274	Crystal Structure Of Spleen Tyrosine Kinase Complex		5e-04
2z8c_A	303	Phosphorylated Insulin Receptor Tyrosine Kinase In		5e-04
3d14_A	272	Crystal Structure Of Mouse Aurora A (Asn186->gly, L		5e-04
2xru_A	280	Aurora-A T288e Complexed With Pha-828300 Length = 2		5e-04
3omv_A	307	Crystal Structure Of C-Raf (Raf-1) Length = 307		5e-04
3daj_A	272	Crystal Structure Of Aurora A Complexed With An Inh		5e-04
2j50_A	280	Structure Of Aurora-2 In Complex With Pha-739358 Le		5e-04
3qbn_A	281	Structure Of Human Aurora A In Complex With A Diami		5e-04
3idp_A	300	B-Raf V600e Kinase Domain In Complex With An Aminoi		5e-04
3nrm_A	283	Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibito		5e-04
1muo_A	297	Crystal Structure Of Aurora-2, An Oncogenic Serine-		6e-04
2x6d_A	285	Aurora-A Bound To An Inhibitor Length = 285		6e-04
1ol5_A	282	Structure Of Aurora-A 122-403, Phosphorylated On Th		6e-04
2c6e_A	283	Aurora A Kinase Activated Mutant (T287d) In Complex		6e-04
1uwj_A	276	The Complex Of Mutant V599e B-raf And Bay439006 Len		6e-04
3unz_A	279	Aurora A In Complex With Rpm1679 Length = 279		6e-04
3fdn_A	279	Structure-Based Drug Design Of Novel Aurora Kinase		6e-04
2xng_A	283	Structure Of Aurora-A Bound To A Selective Imidazop		6e-04
1mq4_A	272	Crystal Structure Of Aurora-A Protein Kinase Length		6e-04
3r21_A	271	Design, Synthesis, And Biological Evaluation Of Pyr		6e-04
2c6d_A	275	Aurora A Kinase Activated Mutant (T287d) In Complex		6e-04
3ha6_A	268	Crystal Structure Of Aurora A In Complex With Tpx2		6e-04
3lau_A	287	Crystal Structure Of Aurora2 Kinase In Complex With		6e-04
3e5a_A	268	Crystal Structure Of Aurora A In Complex With Vx-68		6e-04
3coh_A	268	Crystal Structure Of Aurora-A In Complex With A Pen		7e-04
3o50_A	267	Crystal Structure Of Benzamide 9 Bound To Auroraa L		7e-04
2wqe_A	262	Structure Of S155r Aurora-A Somatic Mutant Length =		7e-04
1k3a_A	299	Structure Of The Insulin-Like Growth Factor 1 Recep		7e-04
3h0y_A	268	Aurora A In Complex With A Bisanilinopyrimidine Len		7e-04
2w1c_A	275	Structure Determination Of Aurora Kinase In Complex		7e-04
2zm3_A	308	Complex Structure Of Insulin-Like Growth Factor Rec		7e-04
2w1d_A	275	Structure Determination Of Aurora Kinase In Complex		8e-04
1m7n_A	322	Crystal Structure Of Unactivated Apo Insulin-Like G		8e-04
3o23_A	305	Human Unphosphorylated Igf1-R Kinase Domain In Comp		8e-04
3qqu_A	301	Cocrystal Structure Of Unphosphorylated Igf With Py		8e-04
3i81_A	315	Crystal Structure Of Insulin-Like Growth Factor 1 R		8e-04
2v7a_A	286	Crystal Structure Of The T315i Abl Mutant In Comple		9e-04
1jqh_A	308	Igf-1 Receptor Kinase Domain Length = 308		9e-04

>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector Length = 349

Iteration: 1
 Score =  133 bits (334), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 82/194 (42%), Positives = 112/194 (57%), Gaps = 27/194 (13%)
Query: 76  QSPGLSLGFSKSTFTYEELARATDGFSDANLLRQDGFGYVHRGVLPNG--------KE-- 125
           + P + LG  K  F+  EL  A+D FS+ N+L + GFG V++G L +G        KE  
Sbjct: 16  EDPEVHLGQLKR-FSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEER 74
Query: 126 ---GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGK--GQP 180
              GE +FQ EVE+IS   H++L+ L G+    ++R+LVY ++ N ++   L  +   QP
Sbjct: 75  XQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQP 134
Query: 181 TMDWPTRIKIALGSAKGLAYLHDDL-----------ANILLDFKFEAKVADFGLAKIASD 229
            +DWP R +IALGSA+GLAYLHD             ANILLD +FEA V DFGLAK+   
Sbjct: 135 PLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDY 194
Query: 230 VNTHVSTRVMGTFG 243
            + HV   V GT G
Sbjct: 195 KDXHVXXAVRGTIG 208

>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation Length = 326

Iteration: 1
 Score =  129 bits (324), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 80/194 (41%), Positives = 110/194 (56%), Gaps = 27/194 (13%)
Query: 76  QSPGLSLGFSKSTFTYEELARATDGFSDANLLRQDGFGYVHRGVLPNG--------KE-- 125
           + P + LG  K  F+  EL  A+D F + N+L + GFG V++G L +G        KE  
Sbjct: 8   EDPEVHLGQLKR-FSLRELQVASDNFXNKNILGRGGFGKVYKGRLADGXLVAVKRLKEER 66
Query: 126 ---GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGK--GQP 180
              GE +FQ EVE+IS   H++L+ L G+    ++R+LVY ++ N ++   L  +   QP
Sbjct: 67  TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQP 126
Query: 181 TMDWPTRIKIALGSAKGLAYLHDDL-----------ANILLDFKFEAKVADFGLAKIASD 229
            +DWP R +IALGSA+GLAYLHD             ANILLD +FEA V DFGLAK+   
Sbjct: 127 PLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDY 186
Query: 230 VNTHVSTRVMGTFG 243
            + HV   V G  G
Sbjct: 187 KDXHVXXAVRGXIG 200

>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 94.0 bits (232), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 100/185 (54%), Gaps = 31/185 (16%)
Query: 88  TFTYEELARATDGFSD------ANLLRQDGFGYVHRGVLPNG---------------KEG 126
           +F++ EL   T+ F +       N + + GFG V++G + N                +E 
Sbjct: 14  SFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTEEL 73
Query: 127 EREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHG-KGQPTMDWP 185
           +++F  E++++++  H++LV L+G+ + G    LVY ++ N +L+  L    G P + W 
Sbjct: 74  KQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWH 133
Query: 186 TRIKIALGSAKGLAYLHDD--------LANILLDFKFEAKVADFGLAKIASD-VNTHVST 236
            R KIA G+A G+ +LH++         ANILLD  F AK++DFGLA+ +     T + +
Sbjct: 134 MRCKIAQGAANGINFLHENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMXS 193
Query: 237 RVMGT 241
           R++GT
Sbjct: 194 RIVGT 198

>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 99/185 (53%), Gaps = 31/185 (16%)
Query: 88  TFTYEELARATDGFSD------ANLLRQDGFGYVHRGVLPNG---------------KEG 126
           +F++ EL   T+ F +       N + + GFG V++G + N                +E 
Sbjct: 14  SFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTEEL 73
Query: 127 EREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHG-KGQPTMDWP 185
           +++F  E++++++  H++LV L+G+ + G    LVY ++ N +L+  L    G P + W 
Sbjct: 74  KQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWH 133
Query: 186 TRIKIALGSAKGLAYLHDD--------LANILLDFKFEAKVADFGLAKIASD-VNTHVST 236
            R KIA G+A G+ +LH++         ANILLD  F AK++DFGLA+ +     T +  
Sbjct: 134 MRCKIAQGAANGINFLHENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMXX 193
Query: 237 RVMGT 241
           R++GT
Sbjct: 194 RIVGT 198

>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By Bacterial Effector Protein Avrpto Length = 321

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/174 (35%), Positives = 94/174 (54%), Gaps = 23/174 (13%)
Query: 93  ELARATDGFSDANLLRQDGFGYVHRGVL------------PNGKEGEREFQAEVEIISRV 140
           +L  AT+ F    L+    FG V++GVL            P   +G  EF+ E+E +S  
Sbjct: 33  DLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFC 92
Query: 141 HHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPT--MDWPTRIKIALGSAKGL 198
            H HLVSL+G+    ++ +L+Y+++ N  L  HL+G   PT  M W  R++I +G+A+GL
Sbjct: 93  RHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGL 152
Query: 199 AYLHD--------DLANILLDFKFEAKVADFGLAKIASDVN-THVSTRVMGTFG 243
            YLH            NILLD  F  K+ DFG++K  ++++ TH+   V GT G
Sbjct: 153 HYLHTRAIIHRDVKSINILLDENFVPKITDFGISKKGTELDQTHLXXVVKGTLG 206

>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With Kinase Pto Length = 327

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/174 (35%), Positives = 93/174 (53%), Gaps = 23/174 (13%)
Query: 93  ELARATDGFSDANLLRQDGFGYVHRGVL------------PNGKEGEREFQAEVEIISRV 140
           +L  AT+ F    L+    FG V++GVL            P   +G  EF+ E+E +S  
Sbjct: 33  DLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFC 92
Query: 141 HHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPT--MDWPTRIKIALGSAKGL 198
            H HLVSL+G+    ++ +L+Y+++ N  L  HL+G   PT  M W  R++I +G+A+GL
Sbjct: 93  RHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGL 152
Query: 199 AYLHD--------DLANILLDFKFEAKVADFGLAKIASDV-NTHVSTRVMGTFG 243
            YLH            NILLD  F  K+ DFG++K  +++  TH+   V GT G
Sbjct: 153 HYLHTRAIIHRDVKSINILLDENFVPKITDFGISKKGTELGQTHLXXVVKGTLG 206

>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form Length = 301

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 98/185 (52%), Gaps = 31/185 (16%)
Query: 88  TFTYEELARATDGFSD------ANLLRQDGFGYVHRGVLPNG---------------KEG 126
           +F++ EL   T+ F +       N + + GFG V++G + N                +E 
Sbjct: 8   SFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTEEL 67
Query: 127 EREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHG-KGQPTMDWP 185
           +++F  E++++++  H++LV L+G+ + G    LVY ++ N +L+  L    G P + W 
Sbjct: 68  KQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWH 127
Query: 186 TRIKIALGSAKGLAYLHDD--------LANILLDFKFEAKVADFGLAKIASDVNTHV-ST 236
            R KIA G+A G+ +LH++         ANILLD  F AK++DFGLA+ +      V   
Sbjct: 128 MRCKIAQGAANGINFLHENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQXVMXX 187
Query: 237 RVMGT 241
           R++GT
Sbjct: 188 RIVGT 192

>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain Length = 298

Iteration: 1
 Score = 90.1 bits (222), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 96/185 (51%), Gaps = 31/185 (16%)
Query: 88  TFTYEELARATDGFSD------ANLLRQDGFGYVHRGVLPNG---------------KEG 126
           +F++ EL   T+ F +       N   + GFG V++G + N                +E 
Sbjct: 5   SFSFYELKNVTNNFDERPISVGGNKXGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTEEL 64
Query: 127 EREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHG-KGQPTMDWP 185
           +++F  E+++ ++  H++LV L+G+ + G    LVY +  N +L+  L    G P + W 
Sbjct: 65  KQQFDQEIKVXAKCQHENLVELLGFSSDGDDLCLVYVYXPNGSLLDRLSCLDGTPPLSWH 124
Query: 186 TRIKIALGSAKGLAYLHDD--------LANILLDFKFEAKVADFGLAKIASDVNTHV-ST 236
            R KIA G+A G+ +LH++         ANILLD  F AK++DFGLA+ +      V  +
Sbjct: 125 XRCKIAQGAANGINFLHENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQXVXXS 184
Query: 237 RVMGT 241
           R++GT
Sbjct: 185 RIVGT 189

>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 74/155 (47%), Gaps = 27/155 (17%)
Query: 101 FSDANLLRQDG---FGYVHRG-----------VLPNGKEGER--EFQAEVEIISRVHHKH 144
           + D N+  + G   FG VHR            ++      ER  EF  EV I+ R+ H +
Sbjct: 36  WCDLNIKEKIGAGSFGTVHRAEWHGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPN 95
Query: 145 LVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKG-QPTMDWPTRIKIALGSAKGLAYLHD 203
           +V  +G  T      +V E++   +L   LH  G +  +D   R+ +A   AKG+ YLH+
Sbjct: 96  IVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHN 155
Query: 204 --------DLA--NILLDFKFEAKVADFGLAKIAS 228
                   DL   N+L+D K+  KV DFGL+++ +
Sbjct: 156 RNPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKA 190

>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 27/155 (17%)
Query: 101 FSDANLLRQDG---FGYVHRG-----------VLPNGKEGER--EFQAEVEIISRVHHKH 144
           + D N+  + G   FG VHR            ++      ER  EF  EV I+ R+ H +
Sbjct: 36  WCDLNIKEKIGAGSFGTVHRAEWHGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPN 95
Query: 145 LVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKG-QPTMDWPTRIKIALGSAKGLAYLHD 203
           +V  +G  T      +V E++   +L   LH  G +  +D   R+ +A   AKG+ YLH+
Sbjct: 96  IVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHN 155
Query: 204 ----------DLANILLDFKFEAKVADFGLAKIAS 228
                        N+L+D K+  KV DFGL+++ +
Sbjct: 156 RNPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRLKA 190

>pdb|3KUL|B Chain B, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 57/109 (52%), Gaps = 7/109 (6%)
Query: 128 REFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTL-VFHLHGKGQPTMDWPT 186
           R+F +E  I+ +  H +++ L G  T G   M+V E++ N +L  F     GQ T+    
Sbjct: 95  RDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMIVTEYMENGSLDTFLRTHDGQFTIMQLV 154
Query: 187 RIKIALGSA----KGLAYLHDDLA--NILLDFKFEAKVADFGLAKIASD 229
            +   +G+       L Y+H DLA  N+L+D     KV+DFGL+++  D
Sbjct: 155 GMLRGVGAGMRYLSDLGYVHRDLAARNVLVDSNLVCKVSDFGLSRVLED 203

>pdb|3KUL|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 57/109 (52%), Gaps = 7/109 (6%)
Query: 128 REFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTL-VFHLHGKGQPTMDWPT 186
           R+F +E  I+ +  H +++ L G  T G   M+V E++ N +L  F     GQ T+    
Sbjct: 95  RDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMIVTEYMENGSLDTFLRTHDGQFTIMQLV 154
Query: 187 RIKIALGSA----KGLAYLHDDLA--NILLDFKFEAKVADFGLAKIASD 229
            +   +G+       L Y+H DLA  N+L+D     KV+DFGL+++  D
Sbjct: 155 GMLRGVGAGMRYLSDLGYVHRDLAARNVLVDSNLVCKVSDFGLSRVLED 203

>pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 74/167 (44%), Gaps = 42/167 (25%)
Query: 111 GFGYVHRGVLPNGK-------------EGE-------REFQAEVEIISRVHHKHLVSLVG 150
           GFG VH+G L   K             EGE       +EFQ EV I+S ++H ++V L G
Sbjct: 31  GFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYG 90
Query: 151 YYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL--------H 202
                 +  +V EFV    L   L  K  P + W  ++++ L  A G+ Y+        H
Sbjct: 91  LMHNPPR--MVMEFVPCGDLYHRLLDKAHP-IKWSVKLRLMLDIALGIEYMQNQNPPIVH 147
Query: 203 DDL--ANILLDFKFE-----AKVADFGLAKIASDVNTHVSTRVMGTF 242
            DL   NI L    E     AKVADFGL    S  + H  + ++G F
Sbjct: 148 RDLRSPNIFLQSLDENAPVCAKVADFGL----SQQSVHSVSGLLGNF 190

>pdb|2REI|A Chain A, Kinase Domain Of Human Ephrin Type-a Receptor 7 (epha7) Length = 318

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 59/122 (48%), Gaps = 11/122 (9%)
Query: 128 REFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTL-VFHLHGKGQPTMDWPT 186
           R+F  E  I+ +  H ++V L G  T G   M+V EF+ N  L  F     GQ T+    
Sbjct: 89  RDFLCEASIMGQFDHPNVVHLEGVVTRGKPVMIVIEFMENGALDAFLRKHDGQFTV--IQ 146
Query: 187 RIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAKIASDVNTHVSTRV 238
            + +  G A G+ YL      H DLA  NIL++     KV+DFGL+++  D    V T  
Sbjct: 147 LVGMLRGIAAGMRYLADMGYVHRDLAARNILVNSNLVCKVSDFGLSRVIEDDPEAVYTTT 206
Query: 239 MG 240
            G
Sbjct: 207 GG 208

>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length Carboxyl-Terminal Src Kinase At 2.5 A Resolution Length = 450

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 57/108 (52%), Gaps = 9/108 (8%)
Query: 130 FQAEVEIISRVHHKHLVSLVGYYTAGSQRM-LVYEFVLNNTLVFHLHGKGQPTMDWPTRI 188
           F AE  +++++ H +LV L+G        + +V E++   +LV +L  +G+  +     +
Sbjct: 233 FLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLL 292
Query: 189 KIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAKIAS 228
           K +L   + + YL      H DLA  N+L+     AKV+DFGL K AS
Sbjct: 293 KFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEAS 340

>pdb|3D7T|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 269

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 57/108 (52%), Gaps = 9/108 (8%)
Query: 130 FQAEVEIISRVHHKHLVSLVGYYTAGSQRM-LVYEFVLNNTLVFHLHGKGQPTMDWPTRI 188
           F AE  +++++ H +LV L+G        + +V E++   +LV +L  +G+  +     +
Sbjct: 52  FLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLL 111
Query: 189 KIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAKIAS 228
           K +L   + + YL      H DLA  N+L+     AKV+DFGL K AS
Sbjct: 112 KFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEAS 159

>pdb|1JPA|A Chain A, Crystal Structure Of Unphosphorylated Ephb2 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 312

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 11/111 (9%)
Query: 128 REFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTL-VFHLHGKGQPTMDWPT 186
           R+F +E  I+ +  H +++ L G  T  +  M++ EF+ N +L  F     GQ T+    
Sbjct: 79  RDFLSEASIMGQFDHPNVIHLEGVVTKSTPVMIITEFMENGSLDSFLRQNDGQFTV--IQ 136
Query: 187 RIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAKIASD 229
            + +  G A G+ YL      H DLA  NIL++     KV+DFGL++   D
Sbjct: 137 LVGMLRGIAAGMKYLADMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLED 187

>pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In Complex With Inhibitor Staurosporine Length = 278

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 57/108 (52%), Gaps = 9/108 (8%)
Query: 130 FQAEVEIISRVHHKHLVSLVGYYTAGSQRM-LVYEFVLNNTLVFHLHGKGQPTMDWPTRI 188
           F AE  +++++ H +LV L+G        + +V E++   +LV +L  +G+  +     +
Sbjct: 61  FLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLL 120
Query: 189 KIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAKIAS 228
           K +L   + + YL      H DLA  N+L+     AKV+DFGL K AS
Sbjct: 121 KFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEAS 168

>pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 263

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 57/108 (52%), Gaps = 9/108 (8%)
Query: 130 FQAEVEIISRVHHKHLVSLVGYYTAGSQRM-LVYEFVLNNTLVFHLHGKGQPTMDWPTRI 188
           F AE  +++++ H +LV L+G        + +V E++   +LV +L  +G+  +     +
Sbjct: 46  FLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLL 105
Query: 189 KIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAKIAS 228
           K +L   + + YL      H DLA  N+L+     AKV+DFGL K AS
Sbjct: 106 KFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEAS 153

>pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:s768a Triple Mutant Length = 373

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 72/173 (41%), Gaps = 28/173 (16%)
Query: 84  FSKSTFTYEELARATDG--FSDANLLRQDGFGYVHRG--VLPNGKE-------------- 125
           F   T T  E A+  D    S   ++    FG V  G   LP+ KE              
Sbjct: 28  FEDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTE 87
Query: 126 -GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDW 184
              R+F  E  I+ +  H +++ L G  T     M+V E++ N +L   L  K       
Sbjct: 88  KQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLR-KHDAQFTV 146
Query: 185 PTRIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAKIASD 229
              + +  G A G+ YL      H DLA  NIL++     KV+DFGLA++  D
Sbjct: 147 IQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLARVLED 199

>pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src Tyrosine Kinase Domain Complexed With Imatinib Length = 286

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 61/130 (46%), Gaps = 13/130 (10%)
Query: 110 DGFGYVHRGVLPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQR--MLVYEFVLN 167
           +G   V    L  G      F  E +++ ++ H+ LV L   Y   S+    +V E++  
Sbjct: 40  NGTTRVAIKTLKPGTMSPEAFLQEAQVMKKIRHEKLVQL---YAVVSEEPIYIVTEYMSK 96
Query: 168 NTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL------HDDL--ANILLDFKFEAKVA 219
            +L+  L G+    +  P  + +A   A G+AY+      H DL  ANIL+      KVA
Sbjct: 97  GSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVA 156
Query: 220 DFGLAKIASD 229
           DFGLA++  D
Sbjct: 157 DFGLARLIED 166

>pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533) Length = 276

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 61/130 (46%), Gaps = 13/130 (10%)
Query: 110 DGFGYVHRGVLPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQR--MLVYEFVLN 167
           +G   V    L  G      F  E +++ ++ H+ LV L   Y   S+    +V E++  
Sbjct: 30  NGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQL---YAVVSEEPIXIVTEYMSK 86
Query: 168 NTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL------HDDL--ANILLDFKFEAKVA 219
            +L+  L G+    +  P  + +A   A G+AY+      H DL  ANIL+      KVA
Sbjct: 87  GSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVA 146
Query: 220 DFGLAKIASD 229
           DFGLA++  D
Sbjct: 147 DFGLARLIED 156

>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor Length = 535

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 61/130 (46%), Gaps = 13/130 (10%)
Query: 110 DGFGYVHRGVLPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQR--MLVYEFVLN 167
           +G   V    L  G      F  E +++ ++ H+ LV L   Y   S+    +V E++  
Sbjct: 289 NGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQL---YAVVSEEPIYIVTEYMSK 345
Query: 168 NTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL------HDDL--ANILLDFKFEAKVA 219
            +L+  L G+    +  P  + +A   A G+AY+      H DL  ANIL+      KVA
Sbjct: 346 GSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVA 405
Query: 220 DFGLAKIASD 229
           DFGLA++  D
Sbjct: 406 DFGLARLIED 415

>pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To Vinylsulfonamide- Pyrazolopyrimidine 9 Length = 286

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 61/130 (46%), Gaps = 13/130 (10%)
Query: 110 DGFGYVHRGVLPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQR--MLVYEFVLN 167
           +G   V    L  G      F  E +++ ++ H+ LV L   Y   S+    +V E++  
Sbjct: 40  NGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQL---YAVVSEEPIYIVCEYMSK 96
Query: 168 NTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL------HDDL--ANILLDFKFEAKVA 219
            +L+  L G+    +  P  + +A   A G+AY+      H DL  ANIL+      KVA
Sbjct: 97  GSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVA 156
Query: 220 DFGLAKIASD 229
           DFGLA++  D
Sbjct: 157 DFGLARLIED 166

>pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451 Length = 279

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 61/130 (46%), Gaps = 13/130 (10%)
Query: 110 DGFGYVHRGVLPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQR--MLVYEFVLN 167
           +G   V    L  G      F  E +++ ++ H+ LV L   Y   S+    +V E++  
Sbjct: 33  NGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQL---YAVVSEEPIYIVTEYMSK 89
Query: 168 NTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL------HDDL--ANILLDFKFEAKVA 219
            +L+  L G+    +  P  + +A   A G+AY+      H DL  ANIL+      KVA
Sbjct: 90  GSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVA 149
Query: 220 DFGLAKIASD 229
           DFGLA++  D
Sbjct: 150 DFGLARLIED 159

>pdb|2R2P|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 5 (Epha5) Length = 295

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 11/111 (9%)
Query: 128 REFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTL-VFHLHGKGQPTMDWPT 186
           R+F  E  I+ +  H +++ L G  T     M+V E++ N +L  F     GQ T+    
Sbjct: 68  RDFLGEASIMGQFDHPNIIHLEGVVTKSKPVMIVTEYMENGSLDTFLKKNDGQFTV--IQ 125
Query: 187 RIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAKIASD 229
            + +  G + G+ YL      H DLA  NIL++     KV+DFGL+++  D
Sbjct: 126 LVGMLRGISAGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLED 176

>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src Length = 452

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 61/130 (46%), Gaps = 13/130 (10%)
Query: 110 DGFGYVHRGVLPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQR--MLVYEFVLN 167
           +G   V    L  G      F  E +++ ++ H+ LV L   Y   S+    +V E++  
Sbjct: 206 NGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQL---YAVVSEEPIYIVTEYMSK 262
Query: 168 NTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL------HDDL--ANILLDFKFEAKVA 219
            +L+  L G+    +  P  + +A   A G+AY+      H DL  ANIL+      KVA
Sbjct: 263 GSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVA 322
Query: 220 DFGLAKIASD 229
           DFGLA++  D
Sbjct: 323 DFGLARLIED 332

>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An Inhibitor Length = 452

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 61/130 (46%), Gaps = 13/130 (10%)
Query: 110 DGFGYVHRGVLPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQR--MLVYEFVLN 167
           +G   V    L  G      F  E +++ ++ H+ LV L   Y   S+    +V E++  
Sbjct: 206 NGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQL---YAVVSEEPIYIVTEYMSK 262
Query: 168 NTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL------HDDL--ANILLDFKFEAKVA 219
            +L+  L G+    +  P  + +A   A G+AY+      H DL  ANIL+      KVA
Sbjct: 263 GSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVA 322
Query: 220 DFGLAKIASD 229
           DFGLA++  D
Sbjct: 323 DFGLARLIED 332

>pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation Length = 286

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 61/130 (46%), Gaps = 13/130 (10%)
Query: 110 DGFGYVHRGVLPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQR--MLVYEFVLN 167
           +G   V    L  G      F  E +++ ++ H+ LV L   Y   S+    +V E++  
Sbjct: 40  NGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQL---YAVVSEEPIYIVIEYMSK 96
Query: 168 NTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL------HDDL--ANILLDFKFEAKVA 219
            +L+  L G+    +  P  + +A   A G+AY+      H DL  ANIL+      KVA
Sbjct: 97  GSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVA 156
Query: 220 DFGLAKIASD 229
           DFGLA++  D
Sbjct: 157 DFGLARLIED 166

>pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs Length = 286

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 61/130 (46%), Gaps = 13/130 (10%)
Query: 110 DGFGYVHRGVLPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQR--MLVYEFVLN 167
           +G   V    L  G      F  E +++ ++ H+ LV L   Y   S+    +V E++  
Sbjct: 40  NGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQL---YAVVSEEPIYIVIEYMSK 96
Query: 168 NTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL------HDDL--ANILLDFKFEAKVA 219
            +L+  L G+    +  P  + +A   A G+AY+      H DL  ANIL+      KVA
Sbjct: 97  GSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVA 156
Query: 220 DFGLAKIASD 229
           DFGLA++  D
Sbjct: 157 DFGLARLIED 166

>pdb|2VWU|A Chain A, Ephb4 Kinase Domain Inhibitor Complex Length = 302

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 63/140 (45%), Gaps = 28/140 (20%)
Query: 112 FGYVHRGVL--PNGKEG---------------EREFQAEVEIISRVHHKHLVSLVGYYTA 154
           FG V RG L  P  KE                 REF +E  I+ +  H +++ L G  T 
Sbjct: 29  FGEVCRGRLKAPGKKESCVAIKTLKGGYTERQRREFLSEASIMGQFEHPNIIRLEGVVTN 88
Query: 155 GSQRMLVYEFVLNNTLVFHLH-GKGQPTMDWPTRIKIALGSAKGLAYL------HDDLA- 206
               M++ EF+ N  L   L    GQ T+     + +  G A G+ YL      H DLA 
Sbjct: 89  SMPVMILTEFMENGALDSFLRLNDGQFTVI--QLVGMLRGIASGMRYLAEMSYVHRDLAA 146
Query: 207 -NILLDFKFEAKVADFGLAK 225
            NIL++     KV+DFGL++
Sbjct: 147 RNILVNSNLVCKVSDFGLSR 166

>pdb|3LXK|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2 And Jak3 Kinase Domains In Complex With Cp-690550 And Cmp-6 Length = 327

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 61/115 (53%), Gaps = 11/115 (9%)
Query: 122 NGKEGEREFQAEVEIISRVHHKHLVSLVGY-YTAGSQRM-LVYEFVLNNTLVFHLHGKGQ 179
           +G + +R+FQ E++I+  +H   +V   G  Y  G Q + LV E++ +  L   L  + +
Sbjct: 63  SGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSLRLVMEYLPSGCLRDFLQ-RHR 121
Query: 180 PTMDWPTRIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAKI 226
             +D    +  +    KG+ YL      H DLA  NIL++ +   K+ADFGLAK+
Sbjct: 122 ARLDASRLLLYSSQICKGMEYLGSRRCVHRDLAARNILVESEAHVKIADFGLAKL 176

>pdb|4AW5|A Chain A, Complex Of The Ephb4 Kinase Domain With An Oxindole Inhibitor Length = 291

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 63/140 (45%), Gaps = 28/140 (20%)
Query: 112 FGYVHRGVL--PNGKEG---------------EREFQAEVEIISRVHHKHLVSLVGYYTA 154
           FG V RG L  P  KE                 REF +E  I+ +  H +++ L G  T 
Sbjct: 27  FGEVCRGRLKAPGKKESCVAIKTLKGGYTERQRREFLSEASIMGQFEHPNIIRLEGVVTN 86
Query: 155 GSQRMLVYEFVLNNTLVFHLH-GKGQPTMDWPTRIKIALGSAKGLAYL------HDDLA- 206
               M++ EF+ N  L   L    GQ T+     + +  G A G+ YL      H DLA 
Sbjct: 87  SMPVMILTEFMENGALDSFLRLNDGQFTVI--QLVGMLRGIASGMRYLAEMSYVHRDLAA 144
Query: 207 -NILLDFKFEAKVADFGLAK 225
            NIL++     KV+DFGL++
Sbjct: 145 RNILVNSNLVCKVSDFGLSR 164

>pdb|3GEQ|A Chain A, Structural Basis For The Chemical Rescue Of Src Kinase Activity Length = 286

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 61/130 (46%), Gaps = 13/130 (10%)
Query: 110 DGFGYVHRGVLPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQR--MLVYEFVLN 167
           +G   V    L  G      F  E +++ ++ H+ LV L   Y   S+    +V E++  
Sbjct: 40  NGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQL---YAVVSEEPIYIVTEYMSK 96
Query: 168 NTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVA 219
            +L+  L G+    +  P  + +A   A G+AY+      H DLA  NIL+      KVA
Sbjct: 97  GSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLAAANILVGENLVCKVA 156
Query: 220 DFGLAKIASD 229
           DFGLA++  D
Sbjct: 157 DFGLARLIED 166

>pdb|2QQ7|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain With Irreversible Inhibitor Length = 286

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 13/130 (10%)
Query: 110 DGFGYVHRGVLPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQR--MLVYEFVLN 167
           +G   V    L  G      F  E +++ ++ H+ LV L   Y   S+    +V E++  
Sbjct: 40  NGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQL---YAVVSEEPIYIVMEYMSK 96
Query: 168 NTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL------HDDL--ANILLDFKFEAKVA 219
             L+  L G+    +  P  + +A   A G+AY+      H DL  ANIL+      KVA
Sbjct: 97  GCLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVA 156
Query: 220 DFGLAKIASD 229
           DFGLA++  D
Sbjct: 157 DFGLARLIED 166

>pdb|3PJC|A Chain A, Crystal Structure Of Jak3 Complexed With A Potent Atp Site Inhibitor Showing High Selectivity Within The Janus Kinase Family Length = 315

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 61/115 (53%), Gaps = 11/115 (9%)
Query: 122 NGKEGEREFQAEVEIISRVHHKHLVSLVGY-YTAGSQRM-LVYEFVLNNTLVFHLHGKGQ 179
           +G + +R+FQ E++I+  +H   +V   G  Y  G Q + LV E++ +  L   L  + +
Sbjct: 51  SGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSLRLVMEYLPSGCLRDFLQ-RHR 109
Query: 180 PTMDWPTRIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAKI 226
             +D    +  +    KG+ YL      H DLA  NIL++ +   K+ADFGLAK+
Sbjct: 110 ARLDASRLLLYSSQICKGMEYLGSRRCVHRDLAARNILVESEAHVKIADFGLAKL 164

>pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In Complex With The Cancer Drug Imatinib. Length = 286

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 61/130 (46%), Gaps = 13/130 (10%)
Query: 110 DGFGYVHRGVLPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQR--MLVYEFVLN 167
           +G   V    L  G      F  E +++ ++ H+ LV L   Y   S+    +V E++  
Sbjct: 40  NGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQL---YAVVSEEPIYIVTEYMSK 96
Query: 168 NTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL------HDDL--ANILLDFKFEAKVA 219
            +L+  L G+    +  P  + +A   A G+AY+      H DL  ANIL+      KVA
Sbjct: 97  GSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVA 156
Query: 220 DFGLAKIASD 229
           DFGLA++  D
Sbjct: 157 DFGLARLIED 166

>pdb|4HVD|A Chain A, Jak3 Kinase Domain In Complex With 2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic Acid ((s)-1,2,2-trimethyl-propyl)-amide Length = 314

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 61/115 (53%), Gaps = 11/115 (9%)
Query: 122 NGKEGEREFQAEVEIISRVHHKHLVSLVGY-YTAGSQRM-LVYEFVLNNTLVFHLHGKGQ 179
           +G + +R+FQ E++I+  +H   +V   G  Y  G Q + LV E++ +  L   L  + +
Sbjct: 50  SGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSLRLVMEYLPSGCLRDFLQ-RHR 108
Query: 180 PTMDWPTRIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAKI 226
             +D    +  +    KG+ YL      H DLA  NIL++ +   K+ADFGLAK+
Sbjct: 109 ARLDASRLLLYSSQICKGMEYLGSRRCVHRDLAARNILVESEAHVKIADFGLAKL 163

>pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor Mc4b Length = 275

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 61/130 (46%), Gaps = 13/130 (10%)
Query: 110 DGFGYVHRGVLPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQR--MLVYEFVLN 167
           +G   V    L  G      F  E +++ ++ H+ LV L   Y   S+    +V E++  
Sbjct: 29  NGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQL---YAVVSEEPIYIVTEYMSK 85
Query: 168 NTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL------HDDL--ANILLDFKFEAKVA 219
            +L+  L G+    +  P  + +A   A G+AY+      H DL  ANIL+      KVA
Sbjct: 86  GSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVA 145
Query: 220 DFGLAKIASD 229
           DFGLA++  D
Sbjct: 146 DFGLARLIED 155

>pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 277

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 61/130 (46%), Gaps = 13/130 (10%)
Query: 110 DGFGYVHRGVLPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQR--MLVYEFVLN 167
           +G   V    L  G      F  E +++ ++ H+ LV L   Y   S+    +V E++  
Sbjct: 31  NGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQL---YAVVSEEPIYIVTEYMSK 87
Query: 168 NTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL------HDDL--ANILLDFKFEAKVA 219
            +L+  L G+    +  P  + +A   A G+AY+      H DL  ANIL+      KVA
Sbjct: 88  GSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVA 147
Query: 220 DFGLAKIASD 229
           DFGLA++  D
Sbjct: 148 DFGLARLIED 157

>pdb|2HWO|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Covalent Inhibitor Length = 286

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 13/130 (10%)
Query: 110 DGFGYVHRGVLPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQR--MLVYEFVLN 167
           +G   V    L  G      F  E +++ ++ H+ LV L   Y   S+    +V E++  
Sbjct: 40  NGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQL---YAVVSEEPIYIVTEYMSK 96
Query: 168 NTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL------HDDL--ANILLDFKFEAKVA 219
             L+  L G+    +  P  + +A   A G+AY+      H DL  ANIL+      KVA
Sbjct: 97  GCLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVA 156
Query: 220 DFGLAKIASD 229
           DFGLA++  D
Sbjct: 157 DFGLARLIED 166

>pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With Compound 7 Length = 298

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 59/109 (54%), Gaps = 11/109 (10%)
Query: 128 REFQAEVEIISRVHHKHLVSLVG-YYTAGSQRM-LVYEFVLNNTLVFHLHGKGQPTMDWP 185
           R+F+ E+EI+  + H ++V   G  Y+AG + + L+ EF+   +L  +L  K +  +D  
Sbjct: 59  RDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEFLPYGSLREYLQ-KHKERIDHI 117
Query: 186 TRIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAKI 226
             ++      KG+ YL      H DLA  NIL++ +   K+ DFGL K+
Sbjct: 118 KLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKV 166

>pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742f Triple Mutant Length = 373

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 72/173 (41%), Gaps = 28/173 (16%)
Query: 84  FSKSTFTYEELARATDG--FSDANLLRQDGFGYVHRG--VLPNGKE-------------- 125
           F   T T  E A+  D    S   ++    FG V  G   LP+ KE              
Sbjct: 28  FEDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTE 87
Query: 126 -GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDW 184
              R+F  E  I+ +  H +++ L G  T     M+V E++ N +L   L  K       
Sbjct: 88  KQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLR-KHDAQFTV 146
Query: 185 PTRIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAKIASD 229
              + +  G A G+ YL      H DLA  NIL++     KV+DFGL+++  D
Sbjct: 147 IQLVGMLRGIASGMKYLSDMGFVHRDLAARNILINSNLVCKVSDFGLSRVLED 199

>pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f Double Mutant Length = 373

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 72/173 (41%), Gaps = 28/173 (16%)
Query: 84  FSKSTFTYEELARATDG--FSDANLLRQDGFGYVHRG--VLPNGKE-------------- 125
           F   T T  E A+  D    S   ++    FG V  G   LP+ KE              
Sbjct: 28  FEDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTE 87
Query: 126 -GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDW 184
              R+F  E  I+ +  H +++ L G  T     M+V E++ N +L   L  K       
Sbjct: 88  KQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLR-KHDAQFTV 146
Query: 185 PTRIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAKIASD 229
              + +  G A G+ YL      H DLA  NIL++     KV+DFGL+++  D
Sbjct: 147 IQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLED 199

>pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor Awl-Ii- 38.3 Length = 361

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 72/170 (42%), Gaps = 28/170 (16%)
Query: 87  STFTYEELARATDG--FSDANLLRQDGFGYVHRG--VLPNGKE---------------GE 127
           ST T  E A+  D    S   ++    FG V  G   LP+ KE                 
Sbjct: 19  STQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQR 78
Query: 128 REFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTR 187
           R+F  E  I+ +  H +++ L G  T     M+V E++ N +L   L  K          
Sbjct: 79  RDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLR-KHDAQFTVIQL 137
Query: 188 IKIALGSAKGLAYLHD------DLA--NILLDFKFEAKVADFGLAKIASD 229
           + +  G A G+ YL D      DLA  NIL++     KV+DFGL+++  D
Sbjct: 138 VGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLED 187

>pdb|2XYU|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With Vuf 12058 Length = 285

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 57/109 (52%), Gaps = 7/109 (6%)
Query: 128 REFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTL-VFHLHGKGQPTMDWPT 186
           R+F +E  I+ +  H +++ L G  T     M++ E++ N +L  F     G+ T+    
Sbjct: 54  RDFLSEASIMGQFDHPNIIHLEGVVTKCKPVMIITEYMENGSLDAFLRKNDGRFTVIQLV 113
Query: 187 RIKIALGSA----KGLAYLHDDLA--NILLDFKFEAKVADFGLAKIASD 229
            +   +GS       ++Y+H DLA  NIL++     KV+DFG++++  D
Sbjct: 114 GMLRGIGSGMKYLSDMSYVHRDLAARNILVNSNLVCKVSDFGMSRVLED 162

>pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant Length = 373

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 72/173 (41%), Gaps = 28/173 (16%)
Query: 84  FSKSTFTYEELARATDG--FSDANLLRQDGFGYVHRG--VLPNGKE-------------- 125
           F   T T  E A+  D    S   ++    FG V  G   LP+ KE              
Sbjct: 28  FEDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTE 87
Query: 126 -GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDW 184
              R+F  E  I+ +  H +++ L G  T     M+V E++ N +L   L  K       
Sbjct: 88  KQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLR-KHDAQFTV 146
Query: 185 PTRIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAKIASD 229
              + +  G A G+ YL      H DLA  NIL++     KV+DFGL+++  D
Sbjct: 147 IQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLED 199

>pdb|2Y6M|A Chain A, Crystal Structure Of Epha4 Kinase Domain Length = 291

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 57/109 (52%), Gaps = 7/109 (6%)
Query: 128 REFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTL-VFHLHGKGQPTMDWPT 186
           R+F +E  I+ +  H +++ L G  T     M++ E++ N +L  F     G+ T+    
Sbjct: 60  RDFLSEASIMGQFDHPNIIHLEGVVTKCKPVMIITEYMENGSLDAFLRKNDGRFTVIQLV 119
Query: 187 RIKIALGSA----KGLAYLHDDLA--NILLDFKFEAKVADFGLAKIASD 229
            +   +GS       ++Y+H DLA  NIL++     KV+DFG++++  D
Sbjct: 120 GMLRGIGSGMKYLSDMSYVHRDLAARNILVNSNLVCKVSDFGMSRVLED 168

>pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound Structure Length = 344

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 72/170 (42%), Gaps = 28/170 (16%)
Query: 87  STFTYEELARATDG--FSDANLLRQDGFGYVHRG--VLPNGKE---------------GE 127
           ST T  E A+  D    S   ++    FG V  G   LP+ KE                 
Sbjct: 2   STQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQR 61
Query: 128 REFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTR 187
           R+F  E  I+ +  H +++ L G  T     M+V E++ N +L   L  K          
Sbjct: 62  RDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLR-KHDAQFTVIQL 120
Query: 188 IKIALGSAKGLAYLHD------DLA--NILLDFKFEAKVADFGLAKIASD 229
           + +  G A G+ YL D      DLA  NIL++     KV+DFGL+++  D
Sbjct: 121 VGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLED 170

>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly Mutant) In Complex With N6-Benzyl Adp Length = 452

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 61/130 (46%), Gaps = 13/130 (10%)
Query: 110 DGFGYVHRGVLPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQR--MLVYEFVLN 167
           +G   V    L  G      F  E +++ ++ H+ LV L   Y   S+    +V E++  
Sbjct: 206 NGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQL---YAVVSEEPIYIVGEYMSK 262
Query: 168 NTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL------HDDL--ANILLDFKFEAKVA 219
            +L+  L G+    +  P  + +A   A G+AY+      H DL  ANIL+      KVA
Sbjct: 263 GSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVA 322
Query: 220 DFGLAKIASD 229
           DFGLA++  D
Sbjct: 323 DFGLARLIED 332

>pdb|4E4L|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30 Length = 302

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 60/107 (56%), Gaps = 11/107 (10%)
Query: 129 EFQAEVEIISRVHHKHLVSLVGYYT--AGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPT 186
           + + E+EI+  ++H+++V   G  T   G+   L+ EF+ + +L  +L  K +  ++   
Sbjct: 69  DLKKEIEILRNLYHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYL-PKNKNKINLKQ 127
Query: 187 RIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAK 225
           ++K A+   KG+ YL      H DLA  N+L++ + + K+ DFGL K
Sbjct: 128 QLKYAVQICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTK 174

>pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant Length = 373

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 9/110 (8%)
Query: 128 REFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTR 187
           R+F  E  I+ +  H +++ L G  T     M+V E++ N +L   L  K          
Sbjct: 91  RDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLR-KHDAQFTVIQL 149
Query: 188 IKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAKIASD 229
           + +  G A G+ YL      H DLA  NIL++     KV+DFGL+++  D
Sbjct: 150 VGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLED 199

>pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 373

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 9/110 (8%)
Query: 128 REFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTR 187
           R+F  E  I+ +  H +++ L G  T     M+V E++ N +L   L  K          
Sbjct: 91  RDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLR-KHDAQFTVIQL 149
Query: 188 IKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAKIASD 229
           + +  G A G+ YL      H DLA  NIL++     KV+DFGL+++  D
Sbjct: 150 VGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLED 199

>pdb|2QOL|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596:y602:s768g Triple Mutant Length = 373

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 71/173 (41%), Gaps = 28/173 (16%)
Query: 84  FSKSTFTYEELARATDG--FSDANLLRQDGFGYVHRG--VLPNGKE-------------- 125
           F   T T  E A+  D    S   ++    FG V  G   LP+ KE              
Sbjct: 28  FEDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTE 87
Query: 126 -GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDW 184
              R+F  E  I+ +  H +++ L G  T     M+V E++ N +L   L  K       
Sbjct: 88  KQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLR-KHDAQFTV 146
Query: 185 PTRIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAKIASD 229
              + +  G A G+ YL      H DLA  NIL++     KV+DFGL ++  D
Sbjct: 147 IQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLGRVLED 199

>pdb|3EYG|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes Length = 290

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 60/107 (56%), Gaps = 11/107 (10%)
Query: 129 EFQAEVEIISRVHHKHLVSLVGYYT--AGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPT 186
           + + E+EI+  ++H+++V   G  T   G+   L+ EF+ + +L  +L  K +  ++   
Sbjct: 57  DLKKEIEILRNLYHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYL-PKNKNKINLKQ 115
Query: 187 RIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAK 225
           ++K A+   KG+ YL      H DLA  N+L++ + + K+ DFGL K
Sbjct: 116 QLKYAVQICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTK 162

>pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To Substrate Kqwdnye[ptyr]iw Length = 371

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 9/110 (8%)
Query: 128 REFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTR 187
           R+F  E  I+ +  H +++ L G  T     M+V E++ N +L   L  K          
Sbjct: 89  RDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLR-KHDAQFTVIQL 147
Query: 188 IKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAKIASD 229
           + +  G A G+ YL      H DLA  NIL++     KV+DFGL+++  D
Sbjct: 148 VGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLED 197

>pdb|1YOL|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Cgp77675 Length = 283

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 13/130 (10%)
Query: 110 DGFGYVHRGVLPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQR--MLVYEFVLN 167
           +G   V    L  G      F  E +++ ++ H+ LV L   Y   S+    +V E++  
Sbjct: 37  NGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQL---YAVVSEEPIYIVTEYMNK 93
Query: 168 NTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL------HDDL--ANILLDFKFEAKVA 219
            +L+  L G+    +  P  + ++   A G+AY+      H DL  ANIL+      KVA
Sbjct: 94  GSLLDFLKGETGKYLRLPQLVDMSAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVA 153
Query: 220 DFGLAKIASD 229
           DFGLA++  D
Sbjct: 154 DFGLARLIED 163

>pdb|1YOJ|A Chain A, Crystal Structure Of Src Kinase Domain Length = 283

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 13/130 (10%)
Query: 110 DGFGYVHRGVLPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQR--MLVYEFVLN 167
           +G   V    L  G      F  E +++ ++ H+ LV L   Y   S+    +V E++  
Sbjct: 37  NGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQL---YAVVSEEPIYIVTEYMNK 93
Query: 168 NTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL------HDDL--ANILLDFKFEAKVA 219
            +L+  L G+    +  P  + ++   A G+AY+      H DL  ANIL+      KVA
Sbjct: 94  GSLLDFLKGETGKYLRLPQLVDMSAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVA 153
Query: 220 DFGLAKIASD 229
           DFGLA++  D
Sbjct: 154 DFGLARLIED 163

>pdb|3SXR|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase Complex With Dasatinib Length = 268

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 64/129 (49%), Gaps = 16/129 (12%)
Query: 119 VLPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHL--HG 176
           ++  G   E EF  E + + ++ H  LV   G  +      +V E++ N  L+ +L  HG
Sbjct: 39  MIKEGSMSEDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVTEYISNGCLLNYLRSHG 98
Query: 177 KG-QPTMDWPTRIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAKIA 227
           KG +P+      +++     +G+A+L      H DLA  N L+D     KV+DFG+ +  
Sbjct: 99  KGLEPS----QLLEMCYDVCEGMAFLESHQFIHRDLAARNCLVDRDLCVKVSDFGMTRYV 154
Query: 228 SDVNTHVST 236
            D + +VS+
Sbjct: 155 LD-DQYVSS 162

>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase Length = 453

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 13/130 (10%)
Query: 110 DGFGYVHRGVLPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQR--MLVYEFVLN 167
           +G   V    L  G      F  E +++ ++ H+ LV L   Y   S+    +V E++  
Sbjct: 207 NGTTRVAIKTLKPGNMSPEAFLQEAQVMKKLRHEKLVQL---YAVVSEEPIYIVTEYMSK 263
Query: 168 NTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL------HDDL--ANILLDFKFEAKVA 219
            +L+  L G+    +  P  + +A   A G+AY+      H DL  ANIL+      KVA
Sbjct: 264 GSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVA 323
Query: 220 DFGLAKIASD 229
           DFGL ++  D
Sbjct: 324 DFGLGRLIED 333

>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30 Length = 302

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 59/109 (54%), Gaps = 11/109 (10%)
Query: 128 REFQAEVEIISRVHHKHLVSLVG-YYTAGSQRM-LVYEFVLNNTLVFHLHGKGQPTMDWP 185
           R+F+ E+EI+  + H ++V   G  Y+AG + + L+ E++   +L  +L  K +  +D  
Sbjct: 63  RDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ-KHKERIDHI 121
Query: 186 TRIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAKI 226
             ++      KG+ YL      H DLA  NIL++ +   K+ DFGL K+
Sbjct: 122 KLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKV 170

>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 326

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 59/109 (54%), Gaps = 11/109 (10%)
Query: 128 REFQAEVEIISRVHHKHLVSLVG-YYTAGSQRM-LVYEFVLNNTLVFHLHGKGQPTMDWP 185
           R+F+ E+EI+  + H ++V   G  Y+AG + + L+ E++   +L  +L  K +  +D  
Sbjct: 87  RDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ-KHKERIDHI 145
Query: 186 TRIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAKI 226
             ++      KG+ YL      H DLA  NIL++ +   K+ DFGL K+
Sbjct: 146 KLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKV 194

>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8 Length = 298

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 59/109 (54%), Gaps = 11/109 (10%)
Query: 128 REFQAEVEIISRVHHKHLVSLVG-YYTAGSQRM-LVYEFVLNNTLVFHLHGKGQPTMDWP 185
           R+F+ E+EI+  + H ++V   G  Y+AG + + L+ E++   +L  +L  K +  +D  
Sbjct: 59  RDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ-KHKERIDHI 117
Query: 186 TRIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAKI 226
             ++      KG+ YL      H DLA  NIL++ +   K+ DFGL K+
Sbjct: 118 KLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKV 166

>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8 Length = 300

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 59/109 (54%), Gaps = 11/109 (10%)
Query: 128 REFQAEVEIISRVHHKHLVSLVG-YYTAGSQRM-LVYEFVLNNTLVFHLHGKGQPTMDWP 185
           R+F+ E+EI+  + H ++V   G  Y+AG + + L+ E++   +L  +L  K +  +D  
Sbjct: 61  RDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ-KHKERIDHI 119
Query: 186 TRIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAKI 226
             ++      KG+ YL      H DLA  NIL++ +   K+ DFGL K+
Sbjct: 120 KLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKV 168

>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A Potent And Specific Pan-Janus Kinase Inhibitor Length = 293

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 59/109 (54%), Gaps = 11/109 (10%)
Query: 128 REFQAEVEIISRVHHKHLVSLVG-YYTAGSQRM-LVYEFVLNNTLVFHLHGKGQPTMDWP 185
           R+F+ E+EI+  + H ++V   G  Y+AG + + L+ E++   +L  +L  K +  +D  
Sbjct: 54  RDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ-KHKERIDHI 112
Query: 186 TRIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAKI 226
             ++      KG+ YL      H DLA  NIL++ +   K+ DFGL K+
Sbjct: 113 KLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKV 161

>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent 2,8-Diaryl Quinoxaline Inhibitor Length = 295

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 59/109 (54%), Gaps = 11/109 (10%)
Query: 128 REFQAEVEIISRVHHKHLVSLVG-YYTAGSQRM-LVYEFVLNNTLVFHLHGKGQPTMDWP 185
           R+F+ E+EI+  + H ++V   G  Y+AG + + L+ E++   +L  +L  K +  +D  
Sbjct: 56  RDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ-KHKERIDHI 114
Query: 186 TRIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAKI 226
             ++      KG+ YL      H DLA  NIL++ +   K+ DFGL K+
Sbjct: 115 KLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKV 163

>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective Inhibitors Of Jak2 Length = 313

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 59/109 (54%), Gaps = 11/109 (10%)
Query: 128 REFQAEVEIISRVHHKHLVSLVG-YYTAGSQRM-LVYEFVLNNTLVFHLHGKGQPTMDWP 185
           R+F+ E+EI+  + H ++V   G  Y+AG + + L+ E++   +L  +L  K +  +D  
Sbjct: 74  RDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ-KHKERIDHI 132
Query: 186 TRIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAKI 226
             ++      KG+ YL      H DLA  NIL++ +   K+ DFGL K+
Sbjct: 133 KLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKV 181

>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors Length = 293

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 59/109 (54%), Gaps = 11/109 (10%)
Query: 128 REFQAEVEIISRVHHKHLVSLVG-YYTAGSQRM-LVYEFVLNNTLVFHLHGKGQPTMDWP 185
           R+F+ E+EI+  + H ++V   G  Y+AG + + L+ E++   +L  +L  K +  +D  
Sbjct: 55  RDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ-KHKERIDHI 113
Query: 186 TRIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAKI 226
             ++      KG+ YL      H DLA  NIL++ +   K+ DFGL K+
Sbjct: 114 KLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKV 162

>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine Inhibitor Length = 301

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 59/109 (54%), Gaps = 11/109 (10%)
Query: 128 REFQAEVEIISRVHHKHLVSLVG-YYTAGSQRM-LVYEFVLNNTLVFHLHGKGQPTMDWP 185
           R+F+ E+EI+  + H ++V   G  Y+AG + + L+ E++   +L  +L  K +  +D  
Sbjct: 56  RDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ-KHKERIDHI 114
Query: 186 TRIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAKI 226
             ++      KG+ YL      H DLA  NIL++ +   K+ DFGL K+
Sbjct: 115 KLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKV 163

>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors Length = 311

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 59/109 (54%), Gaps = 11/109 (10%)
Query: 128 REFQAEVEIISRVHHKHLVSLVG-YYTAGSQRM-LVYEFVLNNTLVFHLHGKGQPTMDWP 185
           R+F+ E+EI+  + H ++V   G  Y+AG + + L+ E++   +L  +L  K +  +D  
Sbjct: 74  RDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ-KHKERIDHI 132
Query: 186 TRIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAKI 226
             ++      KG+ YL      H DLA  NIL++ +   K+ DFGL K+
Sbjct: 133 KLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKV 181

>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii Inhibtor Nvp-Bbt594 Length = 295

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 59/109 (54%), Gaps = 11/109 (10%)
Query: 128 REFQAEVEIISRVHHKHLVSLVG-YYTAGSQRM-LVYEFVLNNTLVFHLHGKGQPTMDWP 185
           R+F+ E+EI+  + H ++V   G  Y+AG + + L+ E++   +L  +L  K +  +D  
Sbjct: 56  RDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ-KHKERIDHI 114
Query: 186 TRIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAKI 226
             ++      KG+ YL      H DLA  NIL++ +   K+ DFGL K+
Sbjct: 115 KLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKV 163

>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor Length = 303

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 59/109 (54%), Gaps = 11/109 (10%)
Query: 128 REFQAEVEIISRVHHKHLVSLVG-YYTAGSQRM-LVYEFVLNNTLVFHLHGKGQPTMDWP 185
           R+F+ E+EI+  + H ++V   G  Y+AG + + L+ E++   +L  +L  K +  +D  
Sbjct: 60  RDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ-KHKERIDHI 118
Query: 186 TRIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAKI 226
             ++      KG+ YL      H DLA  NIL++ +   K+ DFGL K+
Sbjct: 119 KLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKV 167

>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2 Length = 301

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 59/109 (54%), Gaps = 11/109 (10%)
Query: 128 REFQAEVEIISRVHHKHLVSLVG-YYTAGSQRM-LVYEFVLNNTLVFHLHGKGQPTMDWP 185
           R+F+ E+EI+  + H ++V   G  Y+AG + + L+ E++   +L  +L  K +  +D  
Sbjct: 62  RDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ-KHKERIDHI 120
Query: 186 TRIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAKI 226
             ++      KG+ YL      H DLA  NIL++ +   K+ DFGL K+
Sbjct: 121 KLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKV 169

>pdb|2HEN|A Chain A, Crystal Structure Of The Ephb2 Receptor Kinase Domain In Complex With Adp Length = 286

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 11/111 (9%)
Query: 128 REFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTL-VFHLHGKGQPTMDWPT 186
           R+F +E  I+ +  H +++ L G  T  +  M++ EF+ N +L  F     GQ T+    
Sbjct: 53  RDFLSEASIMGQFDHPNVIHLEGVVTKSTPVMIITEFMENGSLDSFLRQNDGQFTV--IQ 110
Query: 187 RIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAKIASD 229
            + +  G A G+ YL      H  LA  NIL++     KV+DFGL++   D
Sbjct: 111 LVGMLRGIAAGMKYLADMNYVHRALAARNILVNSNLVCKVSDFGLSRFLED 161

>pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule W259 Length = 287

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 9/118 (7%)
Query: 120 LPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQ 179
           L  G      F AE  ++ ++ H+ LV L    T      ++ E++ N +LV  L     
Sbjct: 53  LKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ-EPIYIITEYMENGSLVDFLKTPSG 111
Query: 180 PTMDWPTRIKIALGSAKGLA------YLHDDL--ANILLDFKFEAKVADFGLAKIASD 229
             +     + +A   A+G+A      Y+H DL  ANIL+      K+ADFGLA++  D
Sbjct: 112 IKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIED 169

>pdb|2QON|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742a Triple Mutant Length = 373

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 71/173 (41%), Gaps = 28/173 (16%)
Query: 84  FSKSTFTYEELARATDG--FSDANLLRQDGFGYVHRG--VLPNGKE-------------- 125
           F   T T  E A+  D    S   ++    FG V  G   LP+ KE              
Sbjct: 28  FEDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTE 87
Query: 126 -GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDW 184
              R+F  E  I+ +  H +++ L G  T     M+V E + N +L   L  K       
Sbjct: 88  KQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEXMENGSLDSFLR-KHDAQFTV 146
Query: 185 PTRIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAKIASD 229
              + +  G A G+ YL      H DLA  NIL++     KV+DFGL+++  D
Sbjct: 147 IQLVGMLRGIASGMKYLSDMGAVHRDLAARNILINSNLVCKVSDFGLSRVLED 199

>pdb|2PL0|A Chain A, Lck Bound To Imatinib Length = 289

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 70/164 (42%), Gaps = 10/164 (6%)
Query: 75  PQSPGLSLGFSKSTFTYEELARATDG-FSDANLLRQDGFGYVHRGVLPNGKEGEREFQAE 133
           PQ P     +     T + + R   G F +  +   +G   V    L  G      F AE
Sbjct: 9   PQKPWWEDEWEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAE 68
Query: 134 VEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALG 193
             ++ ++ H+ LV L    T      ++ E++ N +LV  L       +     + +A  
Sbjct: 69  ANLMKQLQHQRLVRLYAVVTQ-EPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQ 127
Query: 194 SAKGLA------YLHDDL--ANILLDFKFEAKVADFGLAKIASD 229
            A+G+A      Y+H DL  ANIL+      K+ADFGLA++  D
Sbjct: 128 IAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIED 171

>pdb|2ZM1|A Chain A, Crystal Structure Of Imidazo Pyrazin 1 Bound To The Kinase Domain Of Human Lck, (Auto-Phosphorylated On Tyr394) Length = 285

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 70/164 (42%), Gaps = 10/164 (6%)
Query: 75  PQSPGLSLGFSKSTFTYEELARATDG-FSDANLLRQDGFGYVHRGVLPNGKEGEREFQAE 133
           PQ P     +     T + + R   G F +  +   +G   V    L  G      F AE
Sbjct: 5   PQKPWWEDEWEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAE 64
Query: 134 VEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALG 193
             ++ ++ H+ LV L    T      ++ E++ N +LV  L       +     + +A  
Sbjct: 65  ANLMKQLQHQRLVRLYAVVTQ-EPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQ 123
Query: 194 SAKGLA------YLHDDL--ANILLDFKFEAKVADFGLAKIASD 229
            A+G+A      Y+H DL  ANIL+      K+ADFGLA++  D
Sbjct: 124 IAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIED 167

>pdb|3KMM|A Chain A, Structure Of Human Lck Kinase With A Small Molecule Inhibitor Length = 288

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 9/118 (7%)
Query: 120 LPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQ 179
           L  G      F AE  ++ ++ H+ LV L    T      ++ E++ N +LV  L     
Sbjct: 54  LKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ-EPIYIITEYMENGSLVDFLKTPSG 112
Query: 180 PTMDWPTRIKIALGSAKGLA------YLHDDL--ANILLDFKFEAKVADFGLAKIASD 229
             +     + +A   A+G+A      Y+H DL  ANIL+      K+ADFGLA++  D
Sbjct: 113 IKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIED 170

>pdb|3S95|A Chain A, Crystal Structure Of The Human Limk1 Kinase Domain In Complex With Staurosporine Length = 310

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 17/138 (12%)
Query: 108 RQDGFGYVHRGVLPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLN 167
           R+ G   V + ++   +E +R F  EV+++  + H +++  +G      +   + E++  
Sbjct: 32  RETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEYIKG 91
Query: 168 NTLVFHLHGKGQPTMD----WPTRIKIALGSAKGLAYLHD------DLA--NILLDFKFE 215
            TL   +      +MD    W  R+  A   A G+AYLH       DL   N L+     
Sbjct: 92  GTLRGIIK-----SMDSQYPWSQRVSFAKDIASGMAYLHSMNIIHRDLNSHNCLVRENKN 146
Query: 216 AKVADFGLAKIASDVNTH 233
             VADFGLA++  D  T 
Sbjct: 147 VVVADFGLARLMVDEKTQ 164

>pdb|1YVJ|A Chain A, Crystal Structure Of The Jak3 Kinase Domain In Complex With A Staurosporine Analogue Length = 290

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 59/115 (51%), Gaps = 11/115 (9%)
Query: 122 NGKEGEREFQAEVEIISRVHHKHLVSL--VGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQ 179
           +G + +R+FQ E++I+  +H   +V    V Y     +  LV E++ +  L   L  + +
Sbjct: 47  SGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRPELRLVMEYLPSGCLRDFLQ-RHR 105
Query: 180 PTMDWPTRIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAKI 226
             +D    +  +    KG+ YL      H DLA  NIL++ +   K+ADFGLAK+
Sbjct: 106 ARLDASRLLLYSSQICKGMEYLGSRRCVHRDLAARNILVESEAHVKIADFGLAKL 160

>pdb|1QPD|A Chain A, Structural Analysis Of The Lymphocyte-specific Kinase Lck In Complex With Non-selective And Src Family Selective Kinase Inhibitors Length = 279

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 9/118 (7%)
Query: 120 LPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQ 179
           L  G      F AE  ++ ++ H+ LV L    T      ++ E++ N +LV  L     
Sbjct: 45  LKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ-EPIYIITEYMENGSLVDFLKTPSG 103
Query: 180 PTMDWPTRIKIALGSAKGLA------YLHDDL--ANILLDFKFEAKVADFGLAKIASD 229
             +     + +A   A+G+A      Y+H DL  ANIL+      K+ADFGLA++  D
Sbjct: 104 IKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIED 161

>pdb|3BYS|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Amide 10b Length = 277

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 9/118 (7%)
Query: 120 LPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQ 179
           L  G      F AE  ++ ++ H+ LV L    T      ++ E++ N +LV  L     
Sbjct: 51  LKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ-EPIYIITEYMENGSLVDFLKTPSG 109
Query: 180 PTMDWPTRIKIALGSAKGLA------YLHDDL--ANILLDFKFEAKVADFGLAKIASD 229
             +     + +A   A+G+A      Y+H DL  ANIL+      K+ADFGLA++  D
Sbjct: 110 IKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIED 167

>pdb|2QOB|A Chain A, Human Epha3 Kinase Domain, Base Structure Length = 344

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 71/170 (41%), Gaps = 28/170 (16%)
Query: 87  STFTYEELARATDG--FSDANLLRQDGFGYVHRG--VLPNGKE---------------GE 127
           ST T  E A+  D    S   ++    FG V  G   LP+ KE                 
Sbjct: 2   STQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQR 61
Query: 128 REFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTR 187
           R+F  E  I+ +  H +++ L G  T     M+V E + N +L   L  K          
Sbjct: 62  RDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEXMENGSLDSFLR-KHDAQFTVIQL 120
Query: 188 IKIALGSAKGLAYLHD------DLA--NILLDFKFEAKVADFGLAKIASD 229
           + +  G A G+ YL D      DLA  NIL++     KV+DFGL+++  D
Sbjct: 121 VGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLED 170

>pdb|2OFV|A Chain A, Crystal Structure Of Aminoquinazoline 1 Bound To Lck Length = 277

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 9/118 (7%)
Query: 120 LPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQ 179
           L  G      F AE  ++ ++ H+ LV L    T      ++ E++ N +LV  L     
Sbjct: 50  LKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ-EPIYIITEYMENGSLVDFLKTPSG 108
Query: 180 PTMDWPTRIKIALGSAKGLA------YLHDDL--ANILLDFKFEAKVADFGLAKIASD 229
             +     + +A   A+G+A      Y+H DL  ANIL+      K+ADFGLA++  D
Sbjct: 109 IKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIED 166

>pdb|1QPE|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck In Complex With Non-Selective And Src Family Selective Kinase Inhibitors Length = 279

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 9/118 (7%)
Query: 120 LPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQ 179
           L  G      F AE  ++ ++ H+ LV L    T      ++ E++ N +LV  L     
Sbjct: 45  LKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ-EPIYIITEYMENGSLVDFLKTPSG 103
Query: 180 PTMDWPTRIKIALGSAKGLA------YLHDDL--ANILLDFKFEAKVADFGLAKIASD 229
             +     + +A   A+G+A      Y+H DL  ANIL+      K+ADFGLA++  D
Sbjct: 104 IKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIED 161

>pdb|2OG8|A Chain A, Crystal Structure Of Aminoquinazoline 36 Bound To Lck Length = 265

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 9/118 (7%)
Query: 120 LPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQ 179
           L  G      F AE  ++ ++ H+ LV L    T      ++ E++ N +LV  L     
Sbjct: 40  LKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ-EPIYIITEYMENGSLVDFLKTPSG 98
Query: 180 PTMDWPTRIKIALGSAKGLA------YLHDDL--ANILLDFKFEAKVADFGLAKIASD 229
             +     + +A   A+G+A      Y+H DL  ANIL+      K+ADFGLA++  D
Sbjct: 99  IKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIED 156

>pdb|2OFU|A Chain A, X-Ray Crystal Structure Of 2-Aminopyrimidine Carbamate 43 Bound To Lck Length = 273

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 9/118 (7%)
Query: 120 LPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQ 179
           L  G      F AE  ++ ++ H+ LV L    T      ++ E++ N +LV  L     
Sbjct: 47  LKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ-EPIYIITEYMENGSLVDFLKTPSG 105
Query: 180 PTMDWPTRIKIALGSAKGLA------YLHDDL--ANILLDFKFEAKVADFGLAKIASD 229
             +     + +A   A+G+A      Y+H DL  ANIL+      K+ADFGLA++  D
Sbjct: 106 IKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIED 163

>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase Itk Catalytic Domain With Thienopyrazolylindole Inhibitor 090 Length = 266

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 62/144 (43%), Gaps = 20/144 (13%)
Query: 112 FGYVHRGVLPN-----------GKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRML 160
           FG VH G   N           G   E +F  E E++ ++ H  LV L G     +   L
Sbjct: 20  FGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICL 79
Query: 161 VYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL------HDDLA--NILLDF 212
           V+EF+ +  L  +L  + +      T + + L   +G+AYL      H DLA  N L+  
Sbjct: 80  VFEFMEHGCLSDYLRTQ-RGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGE 138
Query: 213 KFEAKVADFGLAKIASDVNTHVST 236
               KV+DFG+ +   D     ST
Sbjct: 139 NQVIKVSDFGMTRFVLDDQYTSST 162

>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2 Tyrosine Kinase Catalytic Domain Length = 264

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 62/144 (43%), Gaps = 20/144 (13%)
Query: 112 FGYVHRGVLPN-----------GKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRML 160
           FG VH G   N           G   E +F  E E++ ++ H  LV L G     +   L
Sbjct: 18  FGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICL 77
Query: 161 VYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL------HDDLA--NILLDF 212
           V+EF+ +  L  +L  + +      T + + L   +G+AYL      H DLA  N L+  
Sbjct: 78  VFEFMEHGCLSDYLRTQ-RGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGE 136
Query: 213 KFEAKVADFGLAKIASDVNTHVST 236
               KV+DFG+ +   D     ST
Sbjct: 137 NQVIKVSDFGMTRFVLDDQYTSST 160

>pdb|3LCK|A Chain A, The Kinase Domain Of Human Lymphocyte Kinase (Lck), Activated Form (Auto-Phosphorylated On Tyr394) Length = 271

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 9/118 (7%)
Query: 120 LPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQ 179
           L  G      F AE  ++ ++ H+ LV L    T      ++ E++ N +LV  L     
Sbjct: 45  LKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ-EPIYIITEYMENGSLVDFLKTPSG 103
Query: 180 PTMDWPTRIKIALGSAKGLA------YLHDDL--ANILLDFKFEAKVADFGLAKIASD 229
             +     + +A   A+G+A      Y+H DL  ANIL+      K+ADFGLA++  D
Sbjct: 104 IKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIED 161

>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52 Length = 269

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 62/144 (43%), Gaps = 20/144 (13%)
Query: 112 FGYVHRGVLPN-----------GKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRML 160
           FG VH G   N           G   E +F  E E++ ++ H  LV L G     +   L
Sbjct: 23  FGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICL 82
Query: 161 VYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL------HDDLA--NILLDF 212
           V+EF+ +  L  +L  + +      T + + L   +G+AYL      H DLA  N L+  
Sbjct: 83  VFEFMEHGCLSDYLRTQ-RGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGE 141
Query: 213 KFEAKVADFGLAKIASDVNTHVST 236
               KV+DFG+ +   D     ST
Sbjct: 142 NQVIKVSDFGMTRFVLDDQYTSST 165

>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib Length = 266

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 62/144 (43%), Gaps = 20/144 (13%)
Query: 112 FGYVHRGVLPN-----------GKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRML 160
           FG VH G   N           G   E +F  E E++ ++ H  LV L G     +   L
Sbjct: 20  FGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICL 79
Query: 161 VYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL------HDDLA--NILLDF 212
           V+EF+ +  L  +L  + +      T + + L   +G+AYL      H DLA  N L+  
Sbjct: 80  VFEFMEHGCLSDYLRTQ-RGLFAAETLLGMCLDVCEGMAYLEEASVIHRDLAARNCLVGE 138
Query: 213 KFEAKVADFGLAKIASDVNTHVST 236
               KV+DFG+ +   D     ST
Sbjct: 139 NQVIKVSDFGMTRFVLDDQYTSST 162

>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain Length = 298

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 58/109 (53%), Gaps = 11/109 (10%)
Query: 128 REFQAEVEIISRVHHKHLVSLVG-YYTAGSQRM-LVYEFVLNNTLVFHLHGKGQPTMDWP 185
           R+F+ E+EI+  + H ++V   G  Y+AG + + L+ E++   +L  +L    +  +D  
Sbjct: 59  RDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQAHAE-RIDHI 117
Query: 186 TRIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAKI 226
             ++      KG+ YL      H DLA  NIL++ +   K+ DFGL K+
Sbjct: 118 KLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKV 166

>pdb|2OF2|A Chain A, Crystal Structure Of Furanopyrimidine 8 Bound To Lck Length = 271

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 9/118 (7%)
Query: 120 LPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQ 179
           L  G      F AE  ++ ++ H+ LV L    T      ++ E++ N +LV  L     
Sbjct: 45  LKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ-EPIYIITEYMENGSLVDFLKTPSG 103
Query: 180 PTMDWPTRIKIALGSAKGLA------YLHDDL--ANILLDFKFEAKVADFGLAKIASD 229
             +     + +A   A+G+A      Y+H DL  ANIL+      K+ADFGLA++  D
Sbjct: 104 IKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIED 161

>pdb|3BYM|A Chain A, X-Ray Co-Crystal Structure Aminobenzimidazole Triazine 1 Bound To Lck Length = 272

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 9/118 (7%)
Query: 120 LPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQ 179
           L  G      F AE  ++ ++ H+ LV L    T      ++ E++ N +LV  L     
Sbjct: 46  LKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ-EPIYIITEYMENGSLVDFLKTPSG 104
Query: 180 PTMDWPTRIKIALGSAKGLA------YLHDDL--ANILLDFKFEAKVADFGLAKIASD 229
             +     + +A   A+G+A      Y+H DL  ANIL+      K+ADFGLA++  D
Sbjct: 105 IKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIED 162

>pdb|2QO7|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Dephosphorylated, Amp-Pnp Bound Length = 373

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 9/110 (8%)
Query: 128 REFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTR 187
           R+F  E  I+ +  H +++ L G  T     M+V E + N +L   L  K          
Sbjct: 91  RDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEXMENGSLDSFLR-KHDAQFTVIQL 149
Query: 188 IKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAKIASD 229
           + +  G A G+ YL      H DLA  NIL++     KV+DFGL+++  D
Sbjct: 150 VGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLED 199

>pdb|2HEL|A Chain A, Crystal Structure Of A Mutant Epha4 Kinase Domain (Y742a) Length = 306

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 56/111 (50%), Gaps = 11/111 (9%)
Query: 128 REFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTL-VFHLHGKGQPTMDWPT 186
           R+F +E  I+ +  H +++ L G  T     M++ E++ N +L  F     G+ T+    
Sbjct: 75  RDFLSEASIMGQFDHPNIIHLEGVVTKCKPVMIITEYMENGSLDAFLRKNDGRFTV--IQ 132
Query: 187 RIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAKIASD 229
            + +  G   G+ YL      H DLA  NIL++     KV+DFG++++  D
Sbjct: 133 LVGMLRGIGSGMKYLSDMSAVHRDLAARNILVNSNLVCKVSDFGMSRVLED 183

>pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor Length = 286

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 64/144 (44%), Gaps = 20/144 (13%)
Query: 112 FGYVHRGVLPNG--------KEG---EREFQAEVEIISRVHHKHLVSLVGYYTAGSQRML 160
           FG VH G   N         KEG   E +F  E E++ ++ H  LV L G     +   L
Sbjct: 40  FGLVHLGYWLNKDKVAIKTIKEGSMSEDDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICL 99
Query: 161 VYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL------HDDLA--NILLDF 212
           V+EF+ +  L  +L  + +      T + + L   +G+AYL      H DLA  N L+  
Sbjct: 100 VFEFMEHGCLSDYLRTQ-RGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGE 158
Query: 213 KFEAKVADFGLAKIASDVNTHVST 236
               KV+DFG+ +   D     ST
Sbjct: 159 NQVIKVSDFGMTRFVLDDQYTSST 182

>pdb|3OCT|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Mutant V555r In Complex With Dasatinib Length = 265

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 62/126 (49%), Gaps = 8/126 (6%)
Query: 119 VLPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHG-- 176
           ++  G   E EF  E +++  + H+ LV L G  T      ++ E++ N  L+ +L    
Sbjct: 40  MIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMR 99
Query: 177 ---KGQPTMDWPTRIKIALGSAKGLAYLHDDLA--NILLDFKFEAKVADFGLAKIASDVN 231
              + Q  ++    +  A+   +   +LH DLA  N L++ +   KV+DFGL++   D +
Sbjct: 100 HRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLD-D 158
Query: 232 THVSTR 237
            + S+R
Sbjct: 159 EYTSSR 164

>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720 Length = 280

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 10/107 (9%)
Query: 130 FQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIK 189
           F+ EV ++ +  H +++  +GY T   Q  +V ++   ++L  HLH   +   +    I 
Sbjct: 55  FKNEVGVLRKTRHVNILLFMGYSTK-PQLAIVTQWCEGSSLYHHLHA-SETKFEMKKLID 112
Query: 190 IALGSAKGLAYLH------DDLA--NILLDFKFEAKVADFGLAKIAS 228
           IA  +A+G+ YLH       DL   NI L      K+ DFGLA + S
Sbjct: 113 IARQTARGMDYLHAKSIIHRDLKSNNIFLHEDNTVKIGDFGLATVKS 159

>pdb|4EQM|A Chain A, Structural Analysis Of Staphylococcus Aureus SerineTHREONINE KINASE Pknb Length = 294

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 62/124 (50%), Gaps = 6/124 (4%)
Query: 124 KEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMD 183
           +E  + F+ EV   S++ H+++VS++          LV E++   TL  ++   G  ++D
Sbjct: 52  EETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLVMEYIEGPTLSEYIESHGPLSVD 111
Query: 184 ----WPTRIKIALGSAKGLAYLHDDLA--NILLDFKFEAKVADFGLAKIASDVNTHVSTR 237
               +  +I   +  A  +  +H D+   NIL+D     K+ DFG+AK  S+ +   +  
Sbjct: 112 TAINFTNQILDGIKHAHDMRIVHRDIKPQNILIDSNKTLKIFDFGIAKALSETSLTQTNH 171
Query: 238 VMGT 241
           V+GT
Sbjct: 172 VLGT 175

>pdb|2ZV7|A Chain A, Lyn Tyrosine Kinase Domain, Apo Form Length = 279

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 8/118 (6%)
Query: 120 LPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQ 179
           L  G    + F  E  ++  + H  LV L    T      ++ EF+   +L+  L     
Sbjct: 44  LKPGTMSVQAFLEEANLMKTLQHDKLVRLYAVVTKEEPIYIITEFMAKGSLLDFLKSDEG 103
Query: 180 PTMDWPTRIKIALGSAKGLAYL------HDDL--ANILLDFKFEAKVADFGLAKIASD 229
             +  P  I  +   A+G+AY+      H DL  AN+L+      K+ADFGLA++  D
Sbjct: 104 GKVLLPKLIDFSAQIAEGMAYIERKNYIHRDLRAANVLVSESLMCKIADFGLARVIED 161

>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family- Selective Tyrosine Kinase Inhibitor Length = 454

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 52/111 (46%), Gaps = 15/111 (13%)
Query: 130 FQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHL---HGKGQPTMDWPT 186
           F AE  ++  + H  LV L    T      ++ EF+   +L+  L    G  QP    P 
Sbjct: 230 FLAEANVMKTLQHDKLVKLHAVVTK-EPIYIITEFMAKGSLLDFLKSDEGSKQPL---PK 285
Query: 187 RIKIALGSAKGLA------YLHDDL--ANILLDFKFEAKVADFGLAKIASD 229
            I  +   A+G+A      Y+H DL  ANIL+      K+ADFGLA++  D
Sbjct: 286 LIDFSAQIAEGMAFIEQRNYIHRDLRAANILVSASLVCKIADFGLARVIED 336

>pdb|2HK5|A Chain A, Hck Kinase In Complex With Lck Targetted Inhibitor Pg- 1009247 Length = 270

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 52/111 (46%), Gaps = 15/111 (13%)
Query: 130 FQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHL---HGKGQPTMDWPT 186
           F AE  ++  + H  LV L    T      ++ EF+   +L+  L    G  QP    P 
Sbjct: 57  FLAEANVMKTLQHDKLVKLHAVVTK-EPIYIITEFMAKGSLLDFLKSDEGSKQPL---PK 112
Query: 187 RIKIALGSAKGLA------YLHDDL--ANILLDFKFEAKVADFGLAKIASD 229
            I  +   A+G+A      Y+H DL  ANIL+      K+ADFGLA++  D
Sbjct: 113 LIDFSAQIAEGMAFIEQRNYIHRDLRAANILVSASLVCKIADFGLARVIED 163

>pdb|3K54|A Chain A, Structures Of Human Bruton's Tyrosine Kinase In Active And Inactive Conformations Suggests A Mechanism Of Activation For Tec Family Kinases Length = 283

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 57/118 (48%), Gaps = 7/118 (5%)
Query: 119 VLPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHG-- 176
           ++  G   E EF  E +++  + H+ LV L G  T      ++ E++ N  L+ +L    
Sbjct: 55  MIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMR 114
Query: 177 ---KGQPTMDWPTRIKIALGSAKGLAYLHDDLA--NILLDFKFEAKVADFGLAKIASD 229
              + Q  ++    +  A+   +   +LH DLA  N L++ +   KV+DFGL++   D
Sbjct: 115 HRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLD 172

>pdb|3GEN|A Chain A, The 1.6 A Crystal Structure Of Human Bruton's Tyrosine Kinase Bound To A Pyrrolopyrimidine-Containing Compound Length = 283

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 57/118 (48%), Gaps = 7/118 (5%)
Query: 119 VLPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHG-- 176
           ++  G   E EF  E +++  + H+ LV L G  T      ++ E++ N  L+ +L    
Sbjct: 55  MIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMR 114
Query: 177 ---KGQPTMDWPTRIKIALGSAKGLAYLHDDLA--NILLDFKFEAKVADFGLAKIASD 229
              + Q  ++    +  A+   +   +LH DLA  N L++ +   KV+DFGL++   D
Sbjct: 115 HRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLD 172

>pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2 Length = 298

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 59/109 (54%), Gaps = 11/109 (10%)
Query: 128 REFQAEVEIISRVHHKHLVSLVG-YYTAGSQRM-LVYEFVLNNTLVFHLHGKGQPTMDWP 185
           R+F+ E+EI+  + H ++V   G  Y+AG + + L+ E++   +L  +L  K +  +D  
Sbjct: 57  RDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ-KHKERIDHI 115
Query: 186 TRIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAKI 226
             ++      KG+ YL      H +LA  NIL++ +   K+ DFGL K+
Sbjct: 116 KLLQYTSQICKGMEYLGTKRYIHRNLATRNILVENENRVKIGDFGLTKV 164

>pdb|3P08|A Chain A, Crystal Structure Of The Human Btk Kinase Domain Length = 267

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 57/118 (48%), Gaps = 7/118 (5%)
Query: 119 VLPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHG-- 176
           ++  G   E EF  E +++  + H+ LV L G  T      ++ E++ N  L+ +L    
Sbjct: 39  MIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMR 98
Query: 177 ---KGQPTMDWPTRIKIALGSAKGLAYLHDDLA--NILLDFKFEAKVADFGLAKIASD 229
              + Q  ++    +  A+   +   +LH DLA  N L++ +   KV+DFGL++   D
Sbjct: 99  HRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLD 156

>pdb|3PIX|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With 2-Isopropyl-7- (4-Methyl-Piperazin-1-Yl)-4-(5-Methyl-2h-Pyrazol-3- Ylamino)-2h- Phthalazin-1-One Length = 274

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 57/118 (48%), Gaps = 7/118 (5%)
Query: 119 VLPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHG-- 176
           ++  G   E EF  E +++  + H+ LV L G  T      ++ E++ N  L+ +L    
Sbjct: 46  MIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMR 105
Query: 177 ---KGQPTMDWPTRIKIALGSAKGLAYLHDDLA--NILLDFKFEAKVADFGLAKIASD 229
              + Q  ++    +  A+   +   +LH DLA  N L++ +   KV+DFGL++   D
Sbjct: 106 HRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLD 163

>pdb|3OCS|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase In Complex With Inhibitor Cgi1746 Length = 271

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 57/118 (48%), Gaps = 7/118 (5%)
Query: 119 VLPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHG-- 176
           ++  G   E EF  E +++  + H+ LV L G  T      ++ E++ N  L+ +L    
Sbjct: 40  MIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMR 99
Query: 177 ---KGQPTMDWPTRIKIALGSAKGLAYLHDDLA--NILLDFKFEAKVADFGLAKIASD 229
              + Q  ++    +  A+   +   +LH DLA  N L++ +   KV+DFGL++   D
Sbjct: 100 HRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLD 157

>pdb|1K2P|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Domain Length = 263

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 57/118 (48%), Gaps = 7/118 (5%)
Query: 119 VLPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHG-- 176
           ++  G   E EF  E +++  + H+ LV L G  T      ++ E++ N  L+ +L    
Sbjct: 35  MIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMR 94
Query: 177 ---KGQPTMDWPTRIKIALGSAKGLAYLHDDLA--NILLDFKFEAKVADFGLAKIASD 229
              + Q  ++    +  A+   +   +LH DLA  N L++ +   KV+DFGL++   D
Sbjct: 95  HRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLD 152

>pdb|4AOJ|A Chain A, Human Trka In Complex With The Inhibitor Az-23 Length = 329

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 68/158 (43%), Gaps = 23/158 (14%)
Query: 105 NLLRQDGFGYVHRGVLPNGKEGERE-FQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYE 163
           NLL +     V    L    E  R+ FQ E E+++ + H+H+V   G  T G   ++V+E
Sbjct: 64  NLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLMVFE 123
Query: 164 FV----LNNTLVFH-----LHGKGQPTMDWP----TRIKIALGSAKGLAYL------HDD 204
           ++    LN  L  H     L   G+     P      + +A   A G+ YL      H D
Sbjct: 124 YMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLHFVHRD 183
Query: 205 LA--NILLDFKFEAKVADFGLAK-IASDVNTHVSTRVM 239
           LA  N L+      K+ DFG+++ I S     V  R M
Sbjct: 184 LATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTM 221

>pdb|3MPM|A Chain A, Lck Complexed With A Pyrazolopyrimidine Length = 267

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 9/118 (7%)
Query: 120 LPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQ 179
           L  G      F AE  ++ ++ H+ LV L    T      ++ E++ N +LV  L     
Sbjct: 41  LKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ-EPIYIITEYMENGSLVDFLKTPSG 99
Query: 180 PTMDWPTRIKIALGSAKGLA------YLHDDL--ANILLDFKFEAKVADFGLAKIASD 229
             +     + +A   A+G+A      Y+H +L  ANIL+      K+ADFGLA++  D
Sbjct: 100 IKLTINKLLDMAAQIAEGMAFIEERNYIHRNLRAANILVSDTLSCKIADFGLARLIED 157

>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006 Length = 276

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 10/107 (9%)
Query: 130 FQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIK 189
           F+ EV ++ +  H +++  +GY TA  Q  +V ++   ++L  HLH   +   +    I 
Sbjct: 51  FKNEVGVLRKTRHVNILLFMGYSTA-PQLAIVTQWCEGSSLYHHLHII-ETKFEMIKLID 108
Query: 190 IALGSAKGLAYLH------DDLA--NILLDFKFEAKVADFGLAKIAS 228
           IA  +A+G+ YLH       DL   NI L      K+ DFGLA + S
Sbjct: 109 IARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKS 155

>pdb|4F0I|A Chain A, Crystal Structure Of Apo Trka Length = 300

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 68/158 (43%), Gaps = 23/158 (14%)
Query: 105 NLLRQDGFGYVHRGVLPNGKEGERE-FQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYE 163
           NLL +     V    L    E  R+ FQ E E+++ + H+H+V   G  T G   ++V+E
Sbjct: 35  NLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLMVFE 94
Query: 164 FV----LNNTLVFH-----LHGKGQPTMDWP----TRIKIALGSAKGLAYL------HDD 204
           ++    LN  L  H     L   G+     P      + +A   A G+ YL      H D
Sbjct: 95  YMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLHFVHRD 154
Query: 205 LA--NILLDFKFEAKVADFGLAK-IASDVNTHVSTRVM 239
           LA  N L+      K+ DFG+++ I S     V  R M
Sbjct: 155 LATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTM 192

>pdb|4GT5|A Chain A, Crystal Structure Of The Inactive Trka Kinase Domain Length = 306

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 68/158 (43%), Gaps = 23/158 (14%)
Query: 105 NLLRQDGFGYVHRGVLPNGKEGERE-FQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYE 163
           NLL +     V    L    E  R+ FQ E E+++ + H+H+V   G  T G   ++V+E
Sbjct: 41  NLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLMVFE 100
Query: 164 FV----LNNTLVFH-----LHGKGQPTMDWP----TRIKIALGSAKGLAYL------HDD 204
           ++    LN  L  H     L   G+     P      + +A   A G+ YL      H D
Sbjct: 101 YMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLHFVHRD 160
Query: 205 LA--NILLDFKFEAKVADFGLAK-IASDVNTHVSTRVM 239
           LA  N L+      K+ DFG+++ I S     V  R M
Sbjct: 161 LATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTM 198

>pdb|3LMG|A Chain A, Crystal Structure Of The Erbb3 Kinase Domain In Complex With Amp-Pnp Length = 344

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 70/146 (47%), Gaps = 38/146 (26%)
Query: 112 FGYVHRGV-LPNG--------------KEGEREFQAEVE---IISRVHHKHLVSLVGYYT 153
           FG VH+GV +P G              K G + FQA  +    I  + H H+V L+G   
Sbjct: 44  FGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGL-C 102
Query: 154 AGSQRMLVYEFVLNNTLVFHLHG-KG----QPTMDWPTRIKIALGSAKGLAYL------H 202
            GS   LV +++   +L+ H+   +G    Q  ++W  +I      AKG+ YL      H
Sbjct: 103 PGSSLQLVTQYLPLGSLLDHVRQHRGALGPQLLLNWGVQI------AKGMYYLEEHGMVH 156
Query: 203 DDLA--NILLDFKFEAKVADFGLAKI 226
            +LA  N+LL    + +VADFG+A +
Sbjct: 157 RNLAARNVLLKSPSQVQVADFGVADL 182

>pdb|3KEX|A Chain A, Crystal Structure Of The Catalytically Inactive Kinase Domain Of The Human Epidermal Growth Factor Receptor 3 (Her3) Length = 325

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 70/146 (47%), Gaps = 38/146 (26%)
Query: 112 FGYVHRGV-LPNG--------------KEGEREFQAEVE---IISRVHHKHLVSLVGYYT 153
           FG VH+GV +P G              K G + FQA  +    I  + H H+V L+G   
Sbjct: 26  FGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGL-C 84
Query: 154 AGSQRMLVYEFVLNNTLVFHLHG-KG----QPTMDWPTRIKIALGSAKGLAYL------H 202
            GS   LV +++   +L+ H+   +G    Q  ++W  +I      AKG+ YL      H
Sbjct: 85  PGSSLQLVTQYLPLGSLLDHVRQHRGALGPQLLLNWGVQI------AKGMYYLEEHGMVH 138
Query: 203 DDLA--NILLDFKFEAKVADFGLAKI 226
            +LA  N+LL    + +VADFG+A +
Sbjct: 139 RNLAARNVLLKSPSQVQVADFGVADL 164

>pdb|2DQ7|X Chain X, Crystal Structure Of Fyn Kinase Domain Complexed With Staurosporine Length = 283

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 15/131 (11%)
Query: 110 DGFGYVHRGVLPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQR--MLVYEFVLN 167
           +G   V    L  G      F  E +I+ ++ H  LV L   Y   S+    +V E++  
Sbjct: 31  NGNTKVAIKTLKPGTMSPESFLEEAQIMKKLKHDKLVQL---YAVVSEEPIYIVTEYMNK 87
Query: 168 NTLV-FHLHGKGQPTMDWPTRIKIALGSAKGLAYL------HDDL--ANILLDFKFEAKV 218
            +L+ F   G+G+  +  P  + +A   A G+AY+      H DL  ANIL+      K+
Sbjct: 88  GSLLDFLKDGEGR-ALKLPNLVDMAAQVAAGMAYIERMNYIHRDLRSANILVGNGLICKI 146
Query: 219 ADFGLAKIASD 229
           ADFGLA++  D
Sbjct: 147 ADFGLARLIED 157

>pdb|3A4O|X Chain X, Lyn Kinase Domain Length = 286

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 8/118 (6%)
Query: 120 LPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQ 179
           L  G    + F  E  ++  + H  LV L    T      ++ E++   +L+  L     
Sbjct: 45  LKPGTMSVQAFLEEANLMKTLQHDKLVRLYAVVTREEPIYIITEYMAKGSLLDFLKSDEG 104
Query: 180 PTMDWPTRIKIALGSAKGLAYL------HDDL--ANILLDFKFEAKVADFGLAKIASD 229
             +  P  I  +   A+G+AY+      H DL  AN+L+      K+ADFGLA++  D
Sbjct: 105 GKVLLPKLIDFSAQIAEGMAYIERKNYIHRDLRAANVLVSESLMCKIADFGLARVIED 162

>pdb|4ASZ|A Chain A, Crystal Structure Of Apo Trkb Kinase Domain Length = 299

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 19/119 (15%)
Query: 126 GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFV----LNNTLVFH-----LHG 176
             ++F  E E+++ + H+H+V   G    G   ++V+E++    LN  L  H     L  
Sbjct: 58  ARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMA 117
Query: 177 KGQP--TMDWPTRIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAK 225
           +G P   +     + IA   A G+ YL      H DLA  N L+      K+ DFG+++
Sbjct: 118 EGNPPTELTQSQMLHIAQQIAAGMVYLASQHFVHRDLATRNCLVGENLLVKIGDFGMSR 176

>pdb|2R4B|A Chain A, Erbb4 Kinase Domain Complexed With A Thienopyrimidine Inhibitor Length = 321

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 20/118 (16%)
Query: 122 NGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGK---- 177
            G +   EF  E  I++ + H HLV L+G   + + + LV + + +  L+ ++H      
Sbjct: 79  TGPKANVEFMDEALIMASMDHPHLVRLLGVCLSPTIQ-LVTQLMPHGCLLEYVHEHKDNI 137
Query: 178 -GQPTMDWPTRIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAKI 226
             Q  ++W  +I      AKG+ YL      H DLA  N+L+      K+ DFGLA++
Sbjct: 138 GSQLLLNWCVQI------AKGMMYLEERRLVHRDLAARNVLVKSPNHVKITDFGLARL 189

>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex Length = 438

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 52/110 (47%), Gaps = 15/110 (13%)
Query: 130 FQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHL---HGKGQPTMDWPT 186
           F AE  ++  + H  LV L    T      ++ EF+   +L+  L    G  QP    P 
Sbjct: 224 FLAEANVMKTLQHDKLVKLHAVVTK-EPIYIITEFMAKGSLLDFLKSDEGSKQPL---PK 279
Query: 187 RIKIALGSAKGLA------YLHDDL--ANILLDFKFEAKVADFGLAKIAS 228
            I  +   A+G+A      Y+H DL  ANIL+      K+ADFGLA++ +
Sbjct: 280 LIDFSAQIAEGMAFIEQRNYIHRDLRAANILVSASLVCKIADFGLARVGA 329

>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase Length = 307

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 10/107 (9%)
Query: 130 FQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIK 189
           F+ EV ++ +  H +++  +GY T   Q  +V ++   ++L  HLH   +   +    I 
Sbjct: 79  FKNEVGVLRKTRHVNILLFMGYSTK-PQLAIVTQWCEGSSLYHHLHII-ETKFEMIKLID 136
Query: 190 IALGSAKGLAYLH------DDLA--NILLDFKFEAKVADFGLAKIAS 228
           IA  +A+G+ YLH       DL   NI L      K+ DFGLA + S
Sbjct: 137 IARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKS 183

>pdb|3BBT|B Chain B, Crystal Structure Of The Erbb4 Kinase In Complex With Lapatinib Length = 328

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 20/118 (16%)
Query: 122 NGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGK---- 177
            G +   EF  E  I++ + H HLV L+G   + + + LV + + +  L+ ++H      
Sbjct: 56  TGPKANVEFMDEALIMASMDHPHLVRLLGVCLSPTIQ-LVTQLMPHGCLLEYVHEHKDNI 114
Query: 178 -GQPTMDWPTRIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAKI 226
             Q  ++W  +I      AKG+ YL      H DLA  N+L+      K+ DFGLA++
Sbjct: 115 GSQLLLNWCVQI------AKGMMYLEERRLVHRDLAARNVLVKSPNHVKITDFGLARL 166

>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine Inhibitor Length = 306

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 10/107 (9%)
Query: 130 FQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIK 189
           F+ EV ++ +  H +++  +GY T   Q  +V ++   ++L  HLH   +   +    I 
Sbjct: 78  FKNEVGVLRKTRHVNILLFMGYSTK-PQLAIVTQWCEGSSLYHHLHII-ETKFEMIKLID 135
Query: 190 IALGSAKGLAYLH------DDLA--NILLDFKFEAKVADFGLAKIAS 228
           IA  +A+G+ YLH       DL   NI L      K+ DFGLA + S
Sbjct: 136 IARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKS 182

>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885 Length = 281

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 10/107 (9%)
Query: 130 FQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIK 189
           F+ EV ++ +  H +++  +GY T   Q  +V ++   ++L  HLH   +   +    I 
Sbjct: 56  FKNEVGVLRKTRHVNILLFMGYSTK-PQLAIVTQWCEGSSLYHHLHII-ETKFEMIKLID 113
Query: 190 IALGSAKGLAYLH------DDLA--NILLDFKFEAKVADFGLAKIAS 228
           IA  +A+G+ YLH       DL   NI L      K+ DFGLA + S
Sbjct: 114 IARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKS 160

>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With A [1, 3]thiazolo[5,4-B]pyridine Derivative Length = 284

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 10/107 (9%)
Query: 130 FQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIK 189
           F+ EV ++ +  H +++  +GY T   Q  +V ++   ++L  HLH   +   +    I 
Sbjct: 56  FKNEVGVLRKTRHVNILLFMGYSTK-PQLAIVTQWCEGSSLYHHLHII-ETKFEMIKLID 113
Query: 190 IALGSAKGLAYLH------DDLA--NILLDFKFEAKVADFGLAKIAS 228
           IA  +A+G+ YLH       DL   NI L      K+ DFGLA + S
Sbjct: 114 IARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKS 160

>pdb|3V5Q|A Chain A, Discovery Of A Selective Trk Inhibitor With Efficacy In Rodent Cancer Tumor Models Length = 297

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 22/122 (18%)
Query: 126 GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFV----LNNTLVFH-----LHG 176
             ++FQ E E+++ + H+H+V   G    G   ++V+E++    LN  L  H     +  
Sbjct: 60  ARKDFQREAELLTNLQHEHIVKFYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILV 119
Query: 177 KGQP-----TMDWPTRIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGL 223
            GQP      +     + IA   A G+ YL      H DLA  N L+      K+ DFG+
Sbjct: 120 DGQPRQAKGELGLSQMLHIASQIASGMVYLASQHFVHRDLATRNCLVGANLLVKIGDFGM 179
Query: 224 AK 225
           ++
Sbjct: 180 SR 181

>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A Tetrahydronaphthalene Inhibitor Length = 282

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 10/107 (9%)
Query: 130 FQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIK 189
           F+ EV ++ +  H +++  +GY T   Q  +V ++   ++L  HLH   +   +    I 
Sbjct: 53  FKNEVGVLRKTRHVNILLFMGYSTK-PQLAIVTQWCEGSSLYHHLHII-ETKFEMIKLID 110
Query: 190 IALGSAKGLAYLH------DDLA--NILLDFKFEAKVADFGLAKIAS 228
           IA  +A+G+ YLH       DL   NI L      K+ DFGLA + S
Sbjct: 111 IARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKS 157

>pdb|4H58|A Chain A, Braf In Complex With Compound 3 Length = 275

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 10/107 (9%)
Query: 130 FQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIK 189
           F+ EV ++ +  H +++  +GY T   Q  +V ++   ++L  HLH   +   +    I 
Sbjct: 51  FKNEVGVLRKTRHVNILLFMGYSTK-PQLAIVTQWCEGSSLYHHLHII-ETKFEMIKLID 108
Query: 190 IALGSAKGLAYLH------DDLA--NILLDFKFEAKVADFGLAKIAS 228
           IA  +A+G+ YLH       DL   NI L      K+ DFGLA + S
Sbjct: 109 IARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKS 155

>pdb|1IR3|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In Complex With Peptide Substrate And Atp Analog Length = 306

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 70/177 (39%), Gaps = 35/177 (19%)
Query: 84  FSKSTFTYEELARATDGFSDANLLRQDGFGYVHRGVLPNGKEGERE-------------- 129
           F  S F  +E   + +  +    L Q  FG V+ G   +  +GE E              
Sbjct: 2   FPSSVFVPDEWEVSREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASL 61
Query: 130 -----FQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHL--------HG 176
                F  E  ++      H+V L+G  + G   ++V E + +  L  +L        + 
Sbjct: 62  RERIEFLNEASVMKGFTCHHVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENN 121
Query: 177 KGQPTMDWPTRIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAK 225
            G+P       I++A   A G+AYL      H DLA  N ++   F  K+ DFG+ +
Sbjct: 122 PGRPPPTLQEMIQMAAEIADGMAYLNAKKFVHRDLAARNCMVAHDFTVKIGDFGMTR 178

>pdb|1I44|A Chain A, Crystallographic Studies Of An Activation Loop Mutant Of The Insulin Receptor Tyrosine Kinase Length = 306

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 70/177 (39%), Gaps = 35/177 (19%)
Query: 84  FSKSTFTYEELARATDGFSDANLLRQDGFGYVHRGVLPNGKEGERE-------------- 129
           F  S F  +E   + +  +    L Q  FG V+ G   +  +GE E              
Sbjct: 2   FPSSVFVPDEWEVSREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASL 61
Query: 130 -----FQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHL--------HG 176
                F  E  ++      H+V L+G  + G   ++V E + +  L  +L        + 
Sbjct: 62  RERIEFLNEASVMKGFTCHHVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENN 121
Query: 177 KGQPTMDWPTRIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAK 225
            G+P       I++A   A G+AYL      H DLA  N ++   F  K+ DFG+ +
Sbjct: 122 PGRPPPTLQEMIQMAAEIADGMAYLNAKKFVHRDLAARNCMVAHDFTVKIGDFGMTR 178

>pdb|1IRK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Human Insulin Receptor Length = 306

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 70/177 (39%), Gaps = 35/177 (19%)
Query: 84  FSKSTFTYEELARATDGFSDANLLRQDGFGYVHRGVLPNGKEGERE-------------- 129
           F  S F  +E   + +  +    L Q  FG V+ G   +  +GE E              
Sbjct: 2   FPSSVFVPDEWEVSREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASL 61
Query: 130 -----FQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHL--------HG 176
                F  E  ++      H+V L+G  + G   ++V E + +  L  +L        + 
Sbjct: 62  RERIEFLNEASVMKGFTCHHVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENN 121
Query: 177 KGQPTMDWPTRIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAK 225
            G+P       I++A   A G+AYL      H DLA  N ++   F  K+ DFG+ +
Sbjct: 122 PGRPPPTLQEMIQMAAEIADGMAYLNAKKFVHRDLAARNCMVAHDFTVKIGDFGMTR 178

>pdb|3A60|A Chain A, Crystal Structure Of Unphosphorylated P70s6k1 (Form I) Length = 327

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 6/101 (5%)
Query: 131 QAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMD----WPT 186
           +AE  I+  V H  +V L+  +  G +  L+ E++    L   L  +G    D    +  
Sbjct: 69  KAERNILEEVKHPFIVDLIYAFQTGGKLYLILEYLSGGELFMQLEREGIFMEDTACFYLA 128
Query: 187 RIKIALGS--AKGLAYLHDDLANILLDFKFEAKVADFGLAK 225
            I +ALG    KG+ Y      NI+L+ +   K+ DFGL K
Sbjct: 129 EISMALGHLHQKGIIYRDLKPENIMLNHQGHVKLTDFGLCK 169

>pdb|3A62|A Chain A, Crystal Structure Of Phosphorylated P70s6k1 Length = 327

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 6/101 (5%)
Query: 131 QAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMD----WPT 186
           +AE  I+  V H  +V L+  +  G +  L+ E++    L   L  +G    D    +  
Sbjct: 69  KAERNILEEVKHPFIVDLIYAFQTGGKLYLILEYLSGGELFMQLEREGIFMEDTACFYLA 128
Query: 187 RIKIALGS--AKGLAYLHDDLANILLDFKFEAKVADFGLAK 225
            I +ALG    KG+ Y      NI+L+ +   K+ DFGL K
Sbjct: 129 EISMALGHLHQKGIIYRDLKPENIMLNHQGHVKLTDFGLCK 169

>pdb|4E1Z|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole Inhibitor Length = 291

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 12/131 (9%)
Query: 118 GVLPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQR--MLVYEFV----LNNTLV 171
           G  P  + G   +Q E+EI+  ++H+H+V   G      ++   LV E+V    L + L 
Sbjct: 49  GCGPQLRSG---WQREIEILRTLYHEHIVKYKGCCEDQGEKSVQLVMEYVPLGSLRDYLP 105
Query: 172 FHLHGKGQPTMDWPTRIKIALGSAKGLAYLHDDLA--NILLDFKFEAKVADFGLAKIASD 229
            H  G  Q  + +  +I   +       Y+H  LA  N+LLD     K+ DFGLAK   +
Sbjct: 106 RHCVGLAQLLL-FAQQICEGMAYLHAQHYIHRALAARNVLLDNDRLVKIGDFGLAKAVPE 164
Query: 230 VNTHVSTRVMG 240
            + +   R  G
Sbjct: 165 GHEYYRVREDG 175

>pdb|4E20|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole Inhibitor Length = 290

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 12/131 (9%)
Query: 118 GVLPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQR--MLVYEFV----LNNTLV 171
           G  P  + G   +Q E+EI+  ++H+H+V   G      ++   LV E+V    L + L 
Sbjct: 48  GCGPQLRSG---WQREIEILRTLYHEHIVKYKGCCEDQGEKSVQLVMEYVPLGSLRDYLP 104
Query: 172 FHLHGKGQPTMDWPTRIKIALGSAKGLAYLHDDLA--NILLDFKFEAKVADFGLAKIASD 229
            H  G  Q  + +  +I   +       Y+H  LA  N+LLD     K+ DFGLAK   +
Sbjct: 105 RHCVGLAQLLL-FAQQICEGMAYLHAQHYIHRALAARNVLLDNDRLVKIGDFGLAKAVPE 163
Query: 230 VNTHVSTRVMG 240
            + +   R  G
Sbjct: 164 GHEYYRVREDG 174

>pdb|2OO8|X Chain X, Synthesis, Structural Analysis, And Sar Studies Of Triazine Derivatives As Potent, Selective Tie-2 Inhibitors Length = 317

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 23/126 (18%)
Query: 123 GKEGEREFQAEVEIISRV-HHKHLVSLVGYYTAGSQRMLVYEF--------------VLN 167
            K+  R+F  E+E++ ++ HH ++++L+G         L  E+              VL 
Sbjct: 55  SKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLE 114
Query: 168 NTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVA 219
               F +      T+     +  A   A+G+ YL      H DLA  NIL+   + AK+A
Sbjct: 115 TDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIA 174
Query: 220 DFGLAK 225
           DFGL++
Sbjct: 175 DFGLSR 180

>pdb|4FL2|A Chain A, Structural And Biophysical Characterization Of The Syk Activation Switch Length = 636

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 60/112 (53%), Gaps = 8/112 (7%)
Query: 129 EFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFV----LNNTLVFHLHGKGQPTMDW 184
           E  AE  ++ ++ + ++V ++G   A S  MLV E      LN  L  + H K +  ++ 
Sbjct: 417 ELLAEANVMQQLDNPYIVRMIGICEAESW-MLVMEMAELGPLNKYLQQNRHVKDKNIIEL 475
Query: 185 PTRIKIALGSAKGLAYLHDDLA--NILLDFKFEAKVADFGLAK-IASDVNTH 233
             ++ + +   +   ++H DLA  N+LL  +  AK++DFGL+K + +D N +
Sbjct: 476 VHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYY 527

>pdb|4FL3|A Chain A, Structural And Biophysical Characterization Of The Syk Activation Switch Length = 635

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 60/112 (53%), Gaps = 8/112 (7%)
Query: 129 EFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFV----LNNTLVFHLHGKGQPTMDW 184
           E  AE  ++ ++ + ++V ++G   A S  MLV E      LN  L  + H K +  ++ 
Sbjct: 416 ELLAEANVMQQLDNPYIVRMIGICEAESW-MLVMEMAELGPLNKYLQQNRHVKDKNIIEL 474
Query: 185 PTRIKIALGSAKGLAYLHDDLA--NILLDFKFEAKVADFGLAK-IASDVNTH 233
             ++ + +   +   ++H DLA  N+LL  +  AK++DFGL+K + +D N +
Sbjct: 475 VHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYY 526

>pdb|1FVR|A Chain A, Tie2 Kinase Domain Length = 327

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 23/126 (18%)
Query: 123 GKEGEREFQAEVEIISRV-HHKHLVSLVGYYTAGSQRMLVYEF--------------VLN 167
            K+  R+F  E+E++ ++ HH ++++L+G         L  E+              VL 
Sbjct: 65  SKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLE 124
Query: 168 NTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVA 219
               F +      T+     +  A   A+G+ YL      H DLA  NIL+   + AK+A
Sbjct: 125 TDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIA 184
Query: 220 DFGLAK 225
           DFGL++
Sbjct: 185 DFGLSR 190

>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein Kinase Length = 333

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 67/148 (45%), Gaps = 35/148 (23%)
Query: 112 FGYVHRGVL--PNGK---------------EGER-EFQAEVEIISRVHHKHLVSLVGYYT 153
           FG V++G+L   +GK               E +R +F  E  I+ +  H +++ L G  +
Sbjct: 57  FGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVIS 116
Query: 154 AGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLA----------YLHD 203
                M++ E++ N  L   L  K     D    +   +G  +G+A          Y+H 
Sbjct: 117 KYKPMMIITEYMENGALDKFLREK-----DGEFSVLQLVGMLRGIAAGMKYLANMNYVHR 171
Query: 204 DLA--NILLDFKFEAKVADFGLAKIASD 229
           DLA  NIL++     KV+DFGL+++  D
Sbjct: 172 DLAARNILVNSNLVCKVSDFGLSRVLED 199

>pdb|3SRV|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase (Syk) In Complex With A Diaminopyrimidine Carboxamide Inhibitor Length = 277

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 60/112 (53%), Gaps = 8/112 (7%)
Query: 129 EFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFV----LNNTLVFHLHGKGQPTMDW 184
           E  AE  ++ ++ + ++V ++G   A S  MLV E      LN  L  + H K +  ++ 
Sbjct: 58  ELLAEANVMQQLDNPYIVRMIGICEAESW-MLVMEMAELGPLNKYLQQNRHVKDKNIIEL 116
Query: 185 PTRIKIALGSAKGLAYLHDDLA--NILLDFKFEAKVADFGLAK-IASDVNTH 233
             ++ + +   +   ++H DLA  N+LL  +  AK++DFGL+K + +D N +
Sbjct: 117 VHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENXY 168

>pdb|1RQQ|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In Complex With The Sh2 Domain Of Aps Length = 306

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 70/177 (39%), Gaps = 35/177 (19%)
Query: 84  FSKSTFTYEELARATDGFSDANLLRQDGFGYVHRGVLPNGKEGERE-------------- 129
           F  S +  +E   + +  +    L Q  FG V+ G   +  +GE E              
Sbjct: 2   FPSSVYVPDEWEVSREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASL 61
Query: 130 -----FQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHL--------HG 176
                F  E  ++      H+V L+G  + G   ++V E + +  L  +L        + 
Sbjct: 62  RERIEFLNEASVMKGFTCHHVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENN 121
Query: 177 KGQPTMDWPTRIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAK 225
            G+P       I++A   A G+AYL      H DLA  N ++   F  K+ DFG+ +
Sbjct: 122 PGRPPPTLQEMIQMAAEIADGMAYLNAKKFVHRDLAARNCMVAHDFTVKIGDFGMTR 178

>pdb|1XBA|A Chain A, Crystal Structure Of Apo Syk Tyrosine Kinase Domain Length = 291

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 60/112 (53%), Gaps = 8/112 (7%)
Query: 129 EFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFV----LNNTLVFHLHGKGQPTMDW 184
           E  AE  ++ ++ + ++V ++G   A S  MLV E      LN  L  + H K +  ++ 
Sbjct: 64  ELLAEANVMQQLDNPYIVRMIGICEAESW-MLVMEMAELGPLNKYLQQNRHVKDKNIIEL 122
Query: 185 PTRIKIALGSAKGLAYLHDDLA--NILLDFKFEAKVADFGLAK-IASDVNTH 233
             ++ + +   +   ++H DLA  N+LL  +  AK++DFGL+K + +D N +
Sbjct: 123 VHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYY 174

>pdb|3TUB|A Chain A, Crystal Structure Of Syk Kinase Domain With 1-(5-(6,7- Dimethoxyquinolin-4-Yloxy)pyridin-2-Yl)-3-((1r,2s)-2- Phenylcyclopropyl)urea Length = 293

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 60/112 (53%), Gaps = 8/112 (7%)
Query: 129 EFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFV----LNNTLVFHLHGKGQPTMDW 184
           E  AE  ++ ++ + ++V ++G   A S  MLV E      LN  L  + H K +  ++ 
Sbjct: 74  ELLAEANVMQQLDNPYIVRMIGICEAESW-MLVMEMAELGPLNKYLQQNRHVKDKNIIEL 132
Query: 185 PTRIKIALGSAKGLAYLHDDLA--NILLDFKFEAKVADFGLAK-IASDVNTH 233
             ++ + +   +   ++H DLA  N+LL  +  AK++DFGL+K + +D N +
Sbjct: 133 VHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYY 184

>pdb|3VF8|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Syk Catalytic Domain With Pyrazolylbenzimidazole Inhibitor 416 Length = 299

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 60/112 (53%), Gaps = 8/112 (7%)
Query: 129 EFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFV----LNNTLVFHLHGKGQPTMDW 184
           E  AE  ++ ++ + ++V ++G   A S  MLV E      LN  L  + H K +  ++ 
Sbjct: 74  ELLAEANVMQQLDNPYIVRMIGICEAESW-MLVMEMAELGPLNKYLQQNRHVKDKNIIEL 132
Query: 185 PTRIKIALGSAKGLAYLHDDLA--NILLDFKFEAKVADFGLAK-IASDVNTH 233
             ++ + +   +   ++H DLA  N+LL  +  AK++DFGL+K + +D N +
Sbjct: 133 VHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYY 184

>pdb|2J4Z|A Chain A, Structure Of Aurora-2 In Complex With Pha-680626 Length = 306

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 127 EREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHG----KGQPTM 182
           E + + EVEI S + H +++ L GY+   ++  L+ E+    T+   L        Q T 
Sbjct: 78  EHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTA 137
Query: 183 DWPTRIKIALGSAKGLAYLHDDLA--NILLDFKFEAKVADFG 222
            + T +  AL        +H D+   N+LL    E K+ADFG
Sbjct: 138 TYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFG 179

>pdb|2BMC|A Chain A, Aurora-2 T287d T288d Complexed With Pha-680632 Length = 306

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 127 EREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHG----KGQPTM 182
           E + + EVEI S + H +++ L GY+   ++  L+ E+    T+   L        Q T 
Sbjct: 78  EHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTA 137
Query: 183 DWPTRIKIALGSAKGLAYLHDDLA--NILLDFKFEAKVADFG 222
            + T +  AL        +H D+   N+LL    E K+ADFG
Sbjct: 138 TYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFG 179

>pdb|3SRV|B Chain B, Crystal Structure Of Spleen Tyrosine Kinase (Syk) In Complex With A Diaminopyrimidine Carboxamide Inhibitor Length = 277

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 60/112 (53%), Gaps = 8/112 (7%)
Query: 129 EFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFV----LNNTLVFHLHGKGQPTMDW 184
           E  AE  ++ ++ + ++V ++G   A S  MLV E      LN  L  + H K +  ++ 
Sbjct: 58  ELLAEANVMQQLDNPYIVRMIGICEAESW-MLVMEMAELGPLNKYLQQNRHVKDKNIIEL 116
Query: 185 PTRIKIALGSAKGLAYLHDDLA--NILLDFKFEAKVADFGLAK-IASDVNTH 233
             ++ + +   +   ++H DLA  N+LL  +  AK++DFGL+K + +D N +
Sbjct: 117 VHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYY 168

>pdb|3EMG|A Chain A, Discovery And Sar Of Novel 4-Thiazolyl-2- Phenylaminopyrimidines As Potent Inhibitors Of Spleen Tyrosine Kinase (Syk) Length = 291

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 60/112 (53%), Gaps = 8/112 (7%)
Query: 129 EFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFV----LNNTLVFHLHGKGQPTMDW 184
           E  AE  ++ ++ + ++V ++G   A S  MLV E      LN  L  + H K +  ++ 
Sbjct: 72  ELLAEANVMQQLDNPYIVRMIGICEAESW-MLVMEMAELGPLNKYLQQNRHVKDKNIIEL 130
Query: 185 PTRIKIALGSAKGLAYLHDDLA--NILLDFKFEAKVADFGLAK-IASDVNTH 233
             ++ + +   +   ++H DLA  N+LL  +  AK++DFGL+K + +D N +
Sbjct: 131 VHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYY 182

>pdb|2OGV|A Chain A, Crystal Structure Of The Autoinhibited Human C-Fms Kinase Domain Length = 317

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 66/124 (53%), Gaps = 19/124 (15%)
Query: 127 ERE-FQAEVEIISRV-HHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMD- 183
           E+E   +E++I+S +  H+++V+L+G  T G   +++ E+     L+  L  K +  +D 
Sbjct: 84  EKEALMSELKIMSHLGQHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKAEADLDK 143
Query: 184 ---WPTRIKIAL----GSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAK-IA 227
               P  ++  L      A+G+A+L      H D+A  N+LL     AK+ DFGLA+ I 
Sbjct: 144 EDGRPLELRDLLHFSSQVAQGMAFLASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIM 203
Query: 228 SDVN 231
           +D N
Sbjct: 204 NDSN 207

>pdb|4F4P|A Chain A, Syk In Complex With Ligand Lasw836 Length = 273

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 60/112 (53%), Gaps = 8/112 (7%)
Query: 129 EFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFV----LNNTLVFHLHGKGQPTMDW 184
           E  AE  ++ ++ + ++V ++G   A S  MLV E      LN  L  + H K +  ++ 
Sbjct: 52  ELLAEANVMQQLDNPYIVRMIGICEAESW-MLVMEMAELGPLNKYLQQNRHVKDKNIIEL 110
Query: 185 PTRIKIALGSAKGLAYLHDDLA--NILLDFKFEAKVADFGLAK-IASDVNTH 233
             ++ + +   +   ++H DLA  N+LL  +  AK++DFGL+K + +D N +
Sbjct: 111 VHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYY 162

>pdb|2DWB|A Chain A, Aurora-A Kinase Complexed With Amppnp Length = 285

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 6/104 (5%)
Query: 127 EREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHG----KGQPTM 182
           E + + EVEI S + H +++ L GY+   ++  L+ E+    T+   L        Q T 
Sbjct: 57  EHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTA 116
Query: 183 DWPTRIKIALGSAKGLAYLHDDLA--NILLDFKFEAKVADFGLA 224
            + T +  AL        +H D+   N+LL    E K+ADFG +
Sbjct: 117 TYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWS 160

>pdb|3LCD|A Chain A, Inhibitor Bound To A Dfg-In Structure Of The Kinase Domain Of Csf-1r Length = 329

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 66/124 (53%), Gaps = 19/124 (15%)
Query: 127 ERE-FQAEVEIISRV-HHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMD- 183
           E+E   +E++I+S +  H+++V+L+G  T G   +++ E+     L+  L  K +  +D 
Sbjct: 92  EKEALMSELKIMSHLGQHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKAEADLDK 151
Query: 184 ---WPTRIKIAL----GSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAK-IA 227
               P  ++  L      A+G+A+L      H D+A  N+LL     AK+ DFGLA+ I 
Sbjct: 152 EDGRPLELRDLLHFSSQVAQGMAFLASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIM 211
Query: 228 SDVN 231
           +D N
Sbjct: 212 NDSN 215

>pdb|3ETA|A Chain A, Kinase Domain Of Insulin Receptor Complexed With A Pyrrolo Pyridine Inhibitor Length = 317

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 16/113 (14%)
Query: 129 EFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHL--------HGKGQP 180
           EF  E  ++      H+V L+G  + G   ++V E + +  L  +L        +  G+P
Sbjct: 65  EFLNEASVMKGFTCHHVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRP 124
Query: 181 TMDWPTRIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAK 225
                  I++A   A G+AYL      H DLA  N ++   F  K+ DFG+ +
Sbjct: 125 PPTLQEMIQMAAEIADGMAYLNAKKFVHRDLAARNCMVAHDFTVKIGDFGMTR 177

>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii Dihydroquinazoline Inhibitor Length = 307

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 130 FQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIK 189
           F+ EV ++ +  H +++  +GY T   Q  +V ++   ++L  HLH   +   +    I 
Sbjct: 79  FKNEVGVLRKTRHVNILLFMGYSTK-PQLAIVTQWCEGSSLYHHLHII-ETKFEMIKLID 136
Query: 190 IALGSAKGLAYLH------DDLA--NILLDFKFEAKVADFGLA 224
           IA  +A+G+ YLH       DL   NI L      K+ DFGLA
Sbjct: 137 IARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLA 179

>pdb|4DFL|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Complexed With A Sulfonamidopyrazine Piperidine Inhibitor Length = 274

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 60/112 (53%), Gaps = 8/112 (7%)
Query: 129 EFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFV----LNNTLVFHLHGKGQPTMDW 184
           E  AE  ++ ++ + ++V ++G   A S  MLV E      LN  L  + H K +  ++ 
Sbjct: 54  ELLAEANVMQQLDNPYIVRMIGICEAESW-MLVMEMAELGPLNKYLQQNRHVKDKNIIEL 112
Query: 185 PTRIKIALGSAKGLAYLHDDLA--NILLDFKFEAKVADFGLAK-IASDVNTH 233
             ++ + +   +   ++H DLA  N+LL  +  AK++DFGL+K + +D N +
Sbjct: 113 VHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYY 164

>pdb|2Z8C|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In Complex With (4-{[5-Carbamoyl-4-(3-Methylanilino)pyrimidin-2- Yl]amino}phenyl)acetic Acid Length = 303

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 16/113 (14%)
Query: 129 EFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHL--------HGKGQP 180
           EF  E  ++      H+V L+G  + G   ++V E + +  L  +L        +  G+P
Sbjct: 63  EFLNEASVMKGFTCHHVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRP 122
Query: 181 TMDWPTRIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAK 225
                  I++A   A G+AYL      H DLA  N ++   F  K+ DFG+ +
Sbjct: 123 PPTLQEMIQMAAEIADGMAYLNAKKFVHRDLAARNCMVAHDFTVKIGDFGMTR 175

>pdb|3D14|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240->arg, Met302- >leu) In Complex With 1-{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)- Ethyl]- Thiazol-2-Yl}-3-(3-Trifluoromethyl-Phenyl)-Urea Length = 272

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 127 EREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKG----QPTM 182
           E + + EVEI S + H +++ L GY+   ++  L+ E+    T+   L        Q T 
Sbjct: 56  EHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSRFDEQRTA 115
Query: 183 DWPTRIKIALGSAKGLAYLHDDLA--NILLDFKFEAKVADFG 222
            + T +  AL        +H D+   N+LL    E K+ADFG
Sbjct: 116 TYITELANALSYCHSKRVIHRDIKPENLLLGSNGELKIADFG 157

>pdb|2XRU|A Chain A, Aurora-A T288e Complexed With Pha-828300 Length = 280

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 127 EREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHG----KGQPTM 182
           E + + EVEI S + H +++ L GY+   ++  L+ E+    T+   L        Q T 
Sbjct: 52  EHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTA 111
Query: 183 DWPTRIKIALGSAKGLAYLHDDLA--NILLDFKFEAKVADFG 222
            + T +  AL        +H D+   N+LL    E K+ADFG
Sbjct: 112 TYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFG 153

>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1) Length = 307

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 10/107 (9%)
Query: 130 FQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIK 189
           F+ EV ++ +  H +++  +GY T  +   +V ++   ++L  HLH + +        I 
Sbjct: 79  FRNEVAVLRKTRHVNILLFMGYMTKDN-LAIVTQWCEGSSLYKHLHVQ-ETKFQMFQLID 136
Query: 190 IALGSAKGLAYLH------DDLA--NILLDFKFEAKVADFGLAKIAS 228
           IA  +A+G+ YLH       D+   NI L      K+ DFGLA + S
Sbjct: 137 IARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKS 183

>pdb|3DAJ|A Chain A, Crystal Structure Of Aurora A Complexed With An Inhibitor Discovered Through Site-Directed Dynamic Tethering Length = 272

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 127 EREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKG----QPTM 182
           E + + EVEI S + H +++ L GY+   ++  L+ E+    T+   L        Q T 
Sbjct: 56  EHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSRFDEQRTA 115
Query: 183 DWPTRIKIALGSAKGLAYLHDDLA--NILLDFKFEAKVADFG 222
            + T +  AL        +H D+   N+LL    E K+ADFG
Sbjct: 116 TYITELANALSYCHSKRVIHRDIKPENLLLGSNGELKIADFG 157

>pdb|2J50|A Chain A, Structure Of Aurora-2 In Complex With Pha-739358 Length = 280

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 127 EREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKG----QPTM 182
           E + + EVEI S + H +++ L GY+   ++  L+ E+    T+   L        Q T 
Sbjct: 52  EHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTA 111
Query: 183 DWPTRIKIALGSAKGLAYLHDDLA--NILLDFKFEAKVADFG 222
            + T +  AL        +H D+   N+LL    E K+ADFG
Sbjct: 112 TYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFG 153

>pdb|3QBN|A Chain A, Structure Of Human Aurora A In Complex With A Diaminopyrimidine Length = 281

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 127 EREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHG----KGQPTM 182
           E + + EVEI S + H +++ L GY+   ++  L+ E+    T+   L        Q T 
Sbjct: 53  EHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTA 112
Query: 183 DWPTRIKIALGSAKGLAYLHDDLA--NILLDFKFEAKVADFG 222
            + T +  AL        +H D+   N+LL    E K+ADFG
Sbjct: 113 TYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFG 154

>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An Aminoisoquinoline Inhibitor Length = 300

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 130 FQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIK 189
           F+ EV ++ +  H +++  +GY T   Q  +V ++   ++L  HLH   +   +    I 
Sbjct: 71  FKNEVGVLRKTRHVNILLFMGYSTK-PQLAIVTQWCEGSSLYHHLHII-ETKFEMIKLID 128
Query: 190 IALGSAKGLAYLH------DDLA--NILLDFKFEAKVADFGLA 224
           IA  +A+G+ YLH       DL   NI L      K+ DFGLA
Sbjct: 129 IARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLA 171

>pdb|3NRM|A Chain A, Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibitors Length = 283

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 127 EREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKG----QPTM 182
           E + + EVEI S + H +++ L GY+   ++  L+ E+    T+   L        Q T 
Sbjct: 55  EHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTA 114
Query: 183 DWPTRIKIALGSAKGLAYLHDDLA--NILLDFKFEAKVADFG 222
            + T +  AL        +H D+   N+LL    E K+ADFG
Sbjct: 115 TYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFG 156

>pdb|1MUO|A Chain A, Crystal Structure Of Aurora-2, An Oncogenic Serine- Threonine Kinase Length = 297

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 127 EREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHG----KGQPTM 182
           E + + EVEI S + H +++ L GY+   ++  L+ E+    T+   L        Q T 
Sbjct: 69  EHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTA 128
Query: 183 DWPTRIKIALGSAKGLAYLHDDLA--NILLDFKFEAKVADFG 222
            + T +  AL        +H D+   N+LL    E K+ADFG
Sbjct: 129 TYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFG 170

>pdb|2X6D|A Chain A, Aurora-A Bound To An Inhibitor Length = 285

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 127 EREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKG----QPTM 182
           E + + EVEI S + H +++ L GY+   ++  L+ E+    T+   L        Q T 
Sbjct: 57  EHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTA 116
Query: 183 DWPTRIKIALGSAKGLAYLHDDLA--NILLDFKFEAKVADFG 222
            + T +  AL        +H D+   N+LL    E K+ADFG
Sbjct: 117 TYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFG 158

>pdb|1OL5|A Chain A, Structure Of Aurora-A 122-403, Phosphorylated On Thr287, Thr288 And Bound To Tpx2 1-43 Length = 282

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 127 EREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHG----KGQPTM 182
           E + + EVEI S + H +++ L GY+   ++  L+ E+    T+   L        Q T 
Sbjct: 54  EHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTA 113
Query: 183 DWPTRIKIALGSAKGLAYLHDDLA--NILLDFKFEAKVADFG 222
            + T +  AL        +H D+   N+LL    E K+ADFG
Sbjct: 114 TYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFG 155

>pdb|2C6E|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With A 5-Aminopyrimidinyl Quinazoline Inhibitor Length = 283

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 127 EREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKG----QPTM 182
           E + + EVEI S + H +++ L GY+   ++  L+ E+    T+   L        Q T 
Sbjct: 57  EHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTA 116
Query: 183 DWPTRIKIALGSAKGLAYLHDDLA--NILLDFKFEAKVADFG 222
            + T +  AL        +H D+   N+LL    E K+ADFG
Sbjct: 117 TYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFG 158

>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006 Length = 276

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 130 FQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIK 189
           F+ EV ++ +  H +++  +GY T   Q  +V ++   ++L  HLH   +   +    I 
Sbjct: 51  FKNEVGVLRKTRHVNILLFMGYSTK-PQLAIVTQWCEGSSLYHHLHII-ETKFEMIKLID 108
Query: 190 IALGSAKGLAYLH------DDLA--NILLDFKFEAKVADFGLA 224
           IA  +A+G+ YLH       DL   NI L      K+ DFGLA
Sbjct: 109 IARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLA 151

>pdb|3UNZ|A Chain A, Aurora A In Complex With Rpm1679 Length = 279

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 127 EREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHG----KGQPTM 182
           E + + EVEI S + H +++ L GY+   ++  L+ E+    T+   L        Q T 
Sbjct: 53  EHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTA 112
Query: 183 DWPTRIKIALGSAKGLAYLHDDLA--NILLDFKFEAKVADFG 222
            + T +  AL        +H D+   N+LL    E K+ADFG
Sbjct: 113 TYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFG 154

>pdb|3FDN|A Chain A, Structure-Based Drug Design Of Novel Aurora Kinase A Inhibitors: Structure Basis For Potency And Specificity Length = 279

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 127 EREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHG----KGQPTM 182
           E + + EVEI S + H +++ L GY+   ++  L+ E+    T+   L        Q T 
Sbjct: 53  EHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTA 112
Query: 183 DWPTRIKIALGSAKGLAYLHDDLA--NILLDFKFEAKVADFG 222
            + T +  AL        +H D+   N+LL    E K+ADFG
Sbjct: 113 TYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFG 154

>pdb|2XNG|A Chain A, Structure Of Aurora-A Bound To A Selective Imidazopyrazine Inhibitor Length = 283

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 127 EREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHG----KGQPTM 182
           E + + EVEI S + H +++ L GY+   ++  L+ E+    T+   L        Q T 
Sbjct: 55  EHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTA 114
Query: 183 DWPTRIKIALGSAKGLAYLHDDLA--NILLDFKFEAKVADFG 222
            + T +  AL        +H D+   N+LL    E K+ADFG
Sbjct: 115 TYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFG 156

>pdb|1MQ4|A Chain A, Crystal Structure Of Aurora-A Protein Kinase Length = 272

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 127 EREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKG----QPTM 182
           E + + EVEI S + H +++ L GY+   ++  L+ E+    T+   L        Q T 
Sbjct: 56  EHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTA 115
Query: 183 DWPTRIKIALGSAKGLAYLHDDLA--NILLDFKFEAKVADFG 222
            + T +  AL        +H D+   N+LL    E K+ADFG
Sbjct: 116 TYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFG 157

>pdb|3R21|A Chain A, Design, Synthesis, And Biological Evaluation Of Pyrazolopyridine- Sulfonamides As Potent Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I) Length = 271

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 127 EREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHG----KGQPTM 182
           E + + EVEI S + H +++ L GY+   ++  L+ E+    T+   L        Q T 
Sbjct: 55  EHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTA 114
Query: 183 DWPTRIKIALGSAKGLAYLHDDLA--NILLDFKFEAKVADFG 222
            + T +  AL        +H D+   N+LL    E K+ADFG
Sbjct: 115 TYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFG 156

>pdb|2C6D|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With Adpnp Length = 275

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 127 EREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHG----KGQPTM 182
           E + + EVEI S + H +++ L GY+   ++  L+ E+    T+   L        Q T 
Sbjct: 52  EHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTA 111
Query: 183 DWPTRIKIALGSAKGLAYLHDDLA--NILLDFKFEAKVADFG 222
            + T +  AL        +H D+   N+LL    E K+ADFG
Sbjct: 112 TYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFG 153

>pdb|3HA6|A Chain A, Crystal Structure Of Aurora A In Complex With Tpx2 And Compound 10 Length = 268

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 127 EREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKG----QPTM 182
           E + + EVEI S + H +++ L GY+   ++  L+ E+    T+   L        Q T 
Sbjct: 52  EHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTA 111
Query: 183 DWPTRIKIALGSAKGLAYLHDDLA--NILLDFKFEAKVADFG 222
            + T +  AL        +H D+   N+LL    E K+ADFG
Sbjct: 112 TYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFG 153

>pdb|3LAU|A Chain A, Crystal Structure Of Aurora2 Kinase In Complex With A Gsk3beta Inhibitor Length = 287

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 127 EREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKG----QPTM 182
           E + + EVEI S + H +++ L GY+   ++  L+ E+    T+   L        Q T 
Sbjct: 52  EHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTA 111
Query: 183 DWPTRIKIALGSAKGLAYLHDDLA--NILLDFKFEAKVADFG 222
            + T +  AL        +H D+   N+LL    E K+ADFG
Sbjct: 112 TYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFG 153

>pdb|3E5A|A Chain A, Crystal Structure Of Aurora A In Complex With Vx-680 And Tpx2 Length = 268

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 127 EREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKG----QPTM 182
           E + + EVEI S + H +++ L GY+   ++  L+ E+    T+   L        Q T 
Sbjct: 52  EHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTA 111
Query: 183 DWPTRIKIALGSAKGLAYLHDDLA--NILLDFKFEAKVADFG 222
            + T +  AL        +H D+   N+LL    E K+ADFG
Sbjct: 112 TYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFG 153

>pdb|3COH|A Chain A, Crystal Structure Of Aurora-A In Complex With A Pentacyclic Inhibitor Length = 268

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 127 EREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKG----QPTM 182
           E + + EVEI S + H +++ L GY+   ++  L+ E+    T+   L        Q T 
Sbjct: 52  EHQLRREVEIQSHLRHPNILRLYGYFHDSTRVYLILEYAPLGTVYRELQKLSKFDEQRTA 111
Query: 183 DWPTRIKIALGSAKGLAYLHDDLA--NILLDFKFEAKVADFG 222
            + T +  AL        +H D+   N+LL    E K+ADFG
Sbjct: 112 TYITELANALSYCHSKKVIHRDIKPENLLLGSAGELKIADFG 153

>pdb|3O50|A Chain A, Crystal Structure Of Benzamide 9 Bound To Auroraa Length = 267

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 127 EREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKG----QPTM 182
           E + + EVEI S + H +++ L GY+   ++  L+ E+    T+   L        Q T 
Sbjct: 51  EHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTA 110
Query: 183 DWPTRIKIALGSAKGLAYLHDDLA--NILLDFKFEAKVADFG 222
            + T +  AL        +H D+   N+LL    E K+ADFG
Sbjct: 111 TYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFG 152

>pdb|2WQE|A Chain A, Structure Of S155r Aurora-A Somatic Mutant Length = 262

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 127 EREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKG----QPTM 182
           E + + EVEI S + H +++ L GY+   ++  L+ E+    T+   L        Q T 
Sbjct: 49  EHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTA 108
Query: 183 DWPTRIKIALGSAKGLAYLHDDLA--NILLDFKFEAKVADFG 222
            + T +  AL        +H D+   N+LL    E K+ADFG
Sbjct: 109 TYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFG 150

>pdb|1K3A|A Chain A, Structure Of The Insulin-Like Growth Factor 1 Receptor Kinase Length = 299

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 16/113 (14%)
Query: 129 EFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHG-----KGQPTMD 183
           EF  E  ++   +  H+V L+G  + G   +++ E +    L  +L       +  P + 
Sbjct: 59  EFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVLA 118
Query: 184 WPT---RIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAK 225
            P+    I++A   A G+AYL      H DLA  N ++   F  K+ DFG+ +
Sbjct: 119 PPSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTR 171

>pdb|3H0Y|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine Length = 268

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 127 EREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKG----QPTM 182
           E + + EVEI S + H +++ L GY+   ++  L+ E+    T+   L        Q T 
Sbjct: 52  EHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTA 111
Query: 183 DWPTRIKIALGSAKGLAYLHDDLA--NILLDFKFEAKVADFG 222
            + T +  AL        +H D+   N+LL    E K+ADFG
Sbjct: 112 TYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFG 153

>pdb|2W1C|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 275

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 127 EREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKG----QPTM 182
           E + + EVEI S + H +++ L GY+   ++  L+ E+    T+   L        Q T 
Sbjct: 55  EHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTA 114
Query: 183 DWPTRIKIALGSAKGLAYLHDDLA--NILLDFKFEAKVADFG 222
            + T +  AL        +H D+   N+LL    E K+ADFG
Sbjct: 115 TYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFG 156

>pdb|2ZM3|A Chain A, Complex Structure Of Insulin-Like Growth Factor Receptor And Isoquinolinedione Inhibitor Length = 308

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 16/113 (14%)
Query: 129 EFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHG-----KGQPTMD 183
           EF  E  ++   +  H+V L+G  + G   +++ E +    L  +L       +  P + 
Sbjct: 68  EFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVLA 127
Query: 184 WPT---RIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAK 225
            P+    I++A   A G+AYL      H DLA  N ++   F  K+ DFG+ +
Sbjct: 128 PPSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTR 180

>pdb|2W1D|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 275

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 127 EREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKG----QPTM 182
           E + + EVEI S + H +++ L GY+   ++  L+ E+    T+   L        Q T 
Sbjct: 55  EHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTA 114
Query: 183 DWPTRIKIALGSAKGLAYLHDDLA--NILLDFKFEAKVADFG 222
            + T +  AL        +H D+   N+LL    E K+ADFG
Sbjct: 115 TYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFG 156

>pdb|1M7N|A Chain A, Crystal Structure Of Unactivated Apo Insulin-Like Growth Factor-1 Receptor Kinase Domain Length = 322

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 16/113 (14%)
Query: 129 EFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHG-----KGQPTMD 183
           EF  E  ++   +  H+V L+G  + G   +++ E +    L  +L       +  P + 
Sbjct: 74  EFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVLA 133
Query: 184 WPT---RIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAK 225
            P+    I++A   A G+AYL      H DLA  N ++   F  K+ DFG+ +
Sbjct: 134 PPSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTR 186

>pdb|3O23|A Chain A, Human Unphosphorylated Igf1-R Kinase Domain In Complex With An Hydantoin Inhibitor Length = 305

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 71/173 (41%), Gaps = 35/173 (20%)
Query: 88  TFTYEELARATDGFSDANLLRQDGFGYVHRGVL-------PNGKEG-----------ER- 128
            F  +E   A +  + +  L Q  FG V+ GV        P  +             ER 
Sbjct: 5   VFVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERI 64
Query: 129 EFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHG-----KGQPTMD 183
           EF  E  ++   +  H+V L+G  + G   +++ E +    L  +L       +  P + 
Sbjct: 65  EFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVLA 124
Query: 184 WPT---RIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAK 225
            P+    I++A   A G+AYL      H DLA  N ++   F  K+ DFG+ +
Sbjct: 125 PPSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTR 177

>pdb|3QQU|A Chain A, Cocrystal Structure Of Unphosphorylated Igf With Pyrimidine 8 Length = 301

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 16/113 (14%)
Query: 129 EFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHG-----KGQPTMD 183
           EF  E  ++   +  H+V L+G  + G   +++ E +    L  +L       +  P + 
Sbjct: 61  EFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVLA 120
Query: 184 WPT---RIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAK 225
            P+    I++A   A G+AYL      H DLA  N ++   F  K+ DFG+ +
Sbjct: 121 PPSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTR 173

>pdb|3I81|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor (Igf-1r-Wt) Complex With Bms-754807 [1-(4-((5-Cyclopropyl- 1h-Pyrazol-3-Yl)amino)pyrrolo[2,1-F][1,2, 4]triazin-2-Yl)-N- (6-Fluoro-3-Pyridinyl)-2-Methyl-L-Prolinamide] Length = 315

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 16/113 (14%)
Query: 129 EFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHG-----KGQPTMD 183
           EF  E  ++   +  H+V L+G  + G   +++ E +    L  +L       +  P + 
Sbjct: 67  EFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVLA 126
Query: 184 WPT---RIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAK 225
            P+    I++A   A G+AYL      H DLA  N ++   F  K+ DFG+ +
Sbjct: 127 PPSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTR 179

>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With The Inhibitor Pha-739358 Length = 286

Iteration: 1
 Score = 40.4 bits (93), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 8/109 (7%)
Query: 128 REFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMD---- 183
            EF  E  ++  + H +LV L+G  T      ++ EF+    L+ +L    +  ++    
Sbjct: 55  EEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLDYLRECNRQEVNAVVL 114
Query: 184 --WPTRIKIALGSAKGLAYLHDDLA--NILLDFKFEAKVADFGLAKIAS 228
               T+I  A+   +   ++H DLA  N L+      KVADFGL+++ +
Sbjct: 115 LYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMT 163

>pdb|1JQH|A Chain A, Igf-1 Receptor Kinase Domain Length = 308

Iteration: 1
 Score = 40.4 bits (93), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 16/113 (14%)
Query: 129 EFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHG-----KGQPTMD 183
           EF  E  ++   +  H+V L+G  + G   +++ E +    L  +L       +  P + 
Sbjct: 68  EFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVLA 127
Query: 184 WPT---RIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAK 225
            P+    I++A   A G+AYL      H DLA  N ++   F  K+ DFG+ +
Sbjct: 128 PPSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTR 180

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	243
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	2e-97
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	8e-92
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	3e-86
3soc_A	322	Activin receptor type-2A; structural genomics cons	5e-42
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	3e-31
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	2e-28
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	2e-27
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	2e-26
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	6e-26
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	2e-25
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	5e-25
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	9e-25
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	2e-24
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	2e-24
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	1e-22
3q4u_A	301	Activin receptor type-1; structural genomics conso	3e-22
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	4e-22
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	4e-21
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	1e-20
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	2e-20
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	2e-19
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	2e-19
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	2e-19
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	3e-19
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	3e-19
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	4e-19
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	6e-19
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	1e-18
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	1e-18
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	2e-18
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	2e-18
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	2e-18
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	3e-18
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	4e-18
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	4e-18
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	4e-18
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	5e-18
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	5e-18
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	1e-17
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	1e-17
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	1e-17
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	2e-17
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	2e-17
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	2e-17
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	2e-17
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	3e-17
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	4e-17
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	6e-17
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	6e-17
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	1e-16
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	2e-16
3pls_A	298	Macrophage-stimulating protein receptor; protein k	3e-16
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	5e-16
3v5q_A	297	NT-3 growth factor receptor; kinase domain, kinase	1e-15
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	1e-15
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	2e-15
3zzw_A	289	Tyrosine-protein kinase transmembrane receptor RO;	2e-15
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	2e-15
4aoj_A	329	High affinity nerve growth factor receptor; transf	4e-15
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	8e-15
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	1e-14
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	1e-13
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	2e-13
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	4e-13
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	1e-12
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	2e-12
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	3e-12
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	4e-12
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	1e-11
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	1e-11
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	2e-11
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	4e-11
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	9e-11
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	1e-10
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	2e-10
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	2e-10
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	3e-10
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	3e-10
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	4e-10
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	5e-10
2a19_B	284	Interferon-induced, double-stranded RNA-activated	2e-09
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	6e-09
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	6e-09
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	8e-09
3ork_A	311	Serine/threonine protein kinase; structural genomi	1e-08
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	1e-08
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	1e-08
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	2e-08
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	3e-08
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	5e-08
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	6e-08
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	7e-08
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	8e-08
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	9e-08
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	9e-08
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	1e-07
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	1e-07
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	1e-07
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	2e-07
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	2e-07
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	3e-07
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	3e-07
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	4e-07
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	4e-07
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	4e-07
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	4e-07
3o0g_A	292	Cell division protein kinase 5; kinase activator c	5e-07
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	7e-07
1uu3_A	310	HPDK1, 3-phosphoinositide dependent protein kinase	8e-07
3niz_A	311	Rhodanese family protein; structural genomics, str	9e-07
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	1e-06
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	1e-06
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	1e-06
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	1e-06
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	1e-06
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	1e-06
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	1e-06
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	2e-06
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	2e-06
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	2e-06
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	2e-06
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	2e-06
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	2e-06
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	3e-06
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	3e-06
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	3e-06
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	3e-06
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	4e-06
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	5e-06
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	5e-06
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	5e-06
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	6e-06
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	6e-06
3fme_A	290	Dual specificity mitogen-activated protein kinase;	8e-06
3pvu_A	695	Beta-adrenergic receptor kinase 1; transferase, se	8e-06
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	9e-06
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	1e-05
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	1e-05
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	1e-05
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	1e-05
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	1e-05
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	1e-05
3an0_A	340	Dual specificity mitogen-activated protein kinase;	1e-05
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	1e-05
3aln_A	327	Dual specificity mitogen-activated protein kinase;	2e-05
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	2e-05
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	2e-05
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	2e-05
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	3e-05
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	3e-05
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	3e-05
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	3e-05
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	4e-05
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	4e-05
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	4e-05
3bhy_A	283	Death-associated protein kinase 3; death associate	4e-05
2dyl_A	318	Dual specificity mitogen-activated protein kinase	4e-05
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	5e-05
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	5e-05
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	6e-05
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	6e-05
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	6e-05
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	6e-05
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	8e-05
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	1e-04
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	1e-04
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	1e-04
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	1e-04
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	1e-04
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	1e-04
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	1e-04
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	1e-04
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	2e-04
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	2e-04
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	3e-04
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	3e-04
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	3e-04
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	3e-04
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	4e-04
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	6e-04
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	4e-04
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	4e-04
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	4e-04
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	5e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	5e-04
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	5e-04
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	5e-04
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	5e-04
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	6e-04
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	7e-04
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	7e-04
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	7e-04
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	9e-04
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	9e-04
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	9e-04
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	9e-04

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score =  286 bits (735), Expect = 2e-97
 Identities = 82/195 (42%), Positives = 113/195 (57%), Gaps = 27/195 (13%)

Query: 75  PQSPGLSLGFSKSTFTYEELARATDGFSDANLLRQDGFGYVHRGVLPNGKE--------- 125
            + P + LG  K  F+  EL  A+D FS+ N+L + GFG V++G L +G           
Sbjct: 7   EEDPEVHLGQLK-RFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEE 65

Query: 126 ----GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGK--GQ 179
               GE +FQ EVE+IS   H++L+ L G+    ++R+LVY ++ N ++   L  +   Q
Sbjct: 66  RTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQ 125

Query: 180 PTMDWPTRIKIALGSAKGLAYLHDDL-----------ANILLDFKFEAKVADFGLAKIAS 228
           P +DWP R +IALGSA+GLAYLHD             ANILLD +FEA V DFGLAK+  
Sbjct: 126 PPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMD 185

Query: 229 DVNTHVSTRVMGTFG 243
             +THV+T V GT G
Sbjct: 186 YKDTHVTTAVRGTIG 200

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score =  272 bits (697), Expect = 8e-92
 Identities = 71/205 (34%), Positives = 106/205 (51%), Gaps = 24/205 (11%)

Query: 63  GSNYSGSEAPILPQSPG-LSLGFSKSTFTYEELARATDGFSDANLLRQDGFGYVHRGVLP 121
           GS YS +   I         + F        +L  AT+ F    L+    FG V++GVL 
Sbjct: 2   GSKYSKATNSINDALSSSYLVPFESYRVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLR 61

Query: 122 NGKE------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNT 169
           +G +            G  EF+ E+E +S   H HLVSL+G+    ++ +L+Y+++ N  
Sbjct: 62  DGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDERNEMILIYKYMENGN 121

Query: 170 LVFHLHGKGQPT--MDWPTRIKIALGSAKGLAYLHD------DL--ANILLDFKFEAKVA 219
           L  HL+G   PT  M W  R++I +G+A+GL YLH       D+   NILLD  F  K+ 
Sbjct: 122 LKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTRAIIHRDVKSINILLDENFVPKIT 181

Query: 220 DFGLAKIASDV-NTHVSTRVMGTFG 243
           DFG++K  +++  TH+ST V GT G
Sbjct: 182 DFGISKKGTELDQTHLSTVVKGTLG 206

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score =  257 bits (659), Expect = 3e-86
 Identities = 57/187 (30%), Positives = 101/187 (54%), Gaps = 31/187 (16%)

Query: 88  TFTYEELARATDGFSD------ANLLRQDGFGYVHRGVL---------------PNGKEG 126
           +F++ EL   T+ F +       N + + GFG V++G +                  +E 
Sbjct: 14  SFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTEEL 73

Query: 127 EREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHG-KGQPTMDWP 185
           +++F  E++++++  H++LV L+G+ + G    LVY ++ N +L+  L    G P + W 
Sbjct: 74  KQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWH 133

Query: 186 TRIKIALGSAKGLAYLHD------DL--ANILLDFKFEAKVADFGLAKIA-SDVNTHVST 236
            R KIA G+A G+ +LH+      D+  ANILLD  F AK++DFGLA+ +     T +++
Sbjct: 134 MRCKIAQGAANGINFLHENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMTS 193

Query: 237 RVMGTFG 243
           R++GT  
Sbjct: 194 RIVGTTA 200

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score =  144 bits (365), Expect = 5e-42
 Identities = 39/192 (20%), Positives = 67/192 (34%), Gaps = 36/192 (18%)

Query: 85  SKSTFTYEELARATDGFSDANLLRQDGFGYVHRG----------VLPNGKEGEREFQAEV 134
           S      E L   +       +  +  FG V +           + P   +   + + EV
Sbjct: 10  SGVDLGTENLYFQSMPLQLLEVKARGRFGCVWKAQLLNEYVAVKIFPIQDKQSWQNEYEV 69

Query: 135 EIISRVHHKHLVSLVGYYTAGS----QRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKI 190
             +  + H++++  +G    G+       L+  F    +L   L       + W     I
Sbjct: 70  YSLPGMKHENILQFIGAEKRGTSVDVDLWLITAFHEKGSLSDFLKAN---VVSWNELCHI 126

Query: 191 ALGSAKGLAYLHDDL------------------ANILLDFKFEAKVADFGLAKI-ASDVN 231
           A   A+GLAYLH+D+                   N+LL     A +ADFGLA    +  +
Sbjct: 127 AETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLALKFEAGKS 186

Query: 232 THVSTRVMGTFG 243
              +   +GT  
Sbjct: 187 AGDTHGQVGTRR 198

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score =  116 bits (292), Expect = 3e-31
 Identities = 36/195 (18%), Positives = 69/195 (35%), Gaps = 44/195 (22%)

Query: 89  FTYEELARATDGFSDANLLRQDGFGYVHRGVLPNGKE---------GEREFQAEVEI--I 137
               E +   D      L+ +  +G V++G L + +            + F  E  I  +
Sbjct: 3   AAASEPSLDLDNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFANRQNFINEKNIYRV 61

Query: 138 SRVHHKHLVSLVGYYTAGS-----QRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIAL 192
             + H ++   +      +     + +LV E+  N +L  +L      T DW +  ++A 
Sbjct: 62  PLMEHDNIARFIVGDERVTADGRMEYLLVMEYYPNGSLXKYLS---LHTSDWVSSCRLAH 118

Query: 193 GSAKGLAYLHDDL-----------------ANILLDFKFEAKVADFGLAKI-------AS 228
              +GLAYLH +L                  N+L+       ++DFGL+           
Sbjct: 119 SVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGLSMRLTGNRLVRP 178

Query: 229 DVNTHVSTRVMGTFG 243
               + +   +GT  
Sbjct: 179 GEEDNAAISEVGTIR 193

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score =  108 bits (271), Expect = 2e-28
 Identities = 34/152 (22%), Positives = 56/152 (36%), Gaps = 22/152 (14%)

Query: 112 FGYVHRGV-------------LPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQR 158
           FG   +               +   +E +R F  EV+++  + H +++  +G      + 
Sbjct: 23  FGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRL 82

Query: 159 MLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD------DLA--NILL 210
             + E++   TL   +         W  R+  A   A G+AYLH       DL   N L+
Sbjct: 83  NFITEYIKGGTLRGIIKSMDSQ-YPWSQRVSFAKDIASGMAYLHSMNIIHRDLNSHNCLV 141

Query: 211 DFKFEAKVADFGLAKIASDVNTHVSTRVMGTF 242
                  VADFGLA++  D  T          
Sbjct: 142 RENKNVVVADFGLARLMVDEKTQPEGLRSLKK 173

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score =  105 bits (265), Expect = 2e-27
 Identities = 45/157 (28%), Positives = 69/157 (43%), Gaps = 27/157 (17%)

Query: 111 GFGYVHRGVLPNGKE--------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGS 156
            FG VHR    +G +                 EF  EV I+ R+ H ++V  +G  T   
Sbjct: 49  SFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPP 107

Query: 157 QRMLVYEFVLNNTLVFHLHGKGQ-PTMDWPTRIKIALGSAKGLAYLHD--------DL-- 205
              +V E++   +L   LH  G    +D   R+ +A   AKG+ YLH+        +L  
Sbjct: 108 NLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNRNPPIVHRNLKS 167

Query: 206 ANILLDFKFEAKVADFGLAKIASDVNTHVSTRVMGTF 242
            N+L+D K+  KV DFGL+++ +      S    GT 
Sbjct: 168 PNLLVDKKYTVKVCDFGLSRLKAS-TFLSSKSAAGTP 203

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score =  102 bits (257), Expect = 2e-26
 Identities = 47/167 (28%), Positives = 72/167 (43%), Gaps = 42/167 (25%)

Query: 111 GFGYVHRGV-LPNGK-------------------EGEREFQAEVEIISRVHHKHLVSLVG 150
           GFG VH+G  + +                     E  +EFQ EV I+S ++H ++V L G
Sbjct: 31  GFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYG 90

Query: 151 YYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD------- 203
                +   +V EFV    L   L  K  P + W  ++++ L  A G+ Y+ +       
Sbjct: 91  LMH--NPPRMVMEFVPCGDLYHRLLDKAHP-IKWSVKLRLMLDIALGIEYMQNQNPPIVH 147

Query: 204 -DL--ANILLD-----FKFEAKVADFGLAKIASDVNTHVSTRVMGTF 242
            DL   NI L          AKVADFGL++     + H  + ++G F
Sbjct: 148 RDLRSPNIFLQSLDENAPVCAKVADFGLSQQ----SVHSVSGLLGNF 190

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score =  101 bits (253), Expect = 6e-26
 Identities = 26/158 (16%), Positives = 54/158 (34%), Gaps = 33/158 (20%)

Query: 111 GFGYVHRGVLPNGKE--------------GEREFQAEVEIISRVHHKHLVSLVGYYTA-- 154
             G + +G    G +                R+F  E   +    H +++ ++G   +  
Sbjct: 22  HSGELWKGRW-QGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPP 80

Query: 155 GSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DL- 205
                L+  ++   +L   LH      +D    +K AL  A+G+A+LH          L 
Sbjct: 81  APHPTLITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHTLEPLIPRHALN 140

Query: 206 -ANILLDFKFEAKVADFGLAKIASDVNTHVSTRVMGTF 242
             ++++D    A+++   +           S   M   
Sbjct: 141 SRSVMIDEDMTARISMADVKFSFQ------SPGRMYAP 172

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score =  100 bits (251), Expect = 2e-25
 Identities = 30/149 (20%), Positives = 55/149 (36%), Gaps = 22/149 (14%)

Query: 111 GFGYVHRG---------VLPNGKEGE---REFQAEVEIISRVHHKHLVSLVGYYTAGSQR 158
            FG V+ G         ++   ++ E   + F+ EV    +  H+++V  +G   +    
Sbjct: 45  RFGQVYHGRWHGEVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPPHL 104

Query: 159 MLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD------DL--ANILL 210
            ++       TL   +       +D     +IA    KG+ YLH       DL   N+  
Sbjct: 105 AIITSLCKGRTLYSVVRDAKIV-LDVNKTRQIAQEIVKGMGYLHAKGILHKDLKSKNVFY 163

Query: 211 DFKFEAKVADFGLAKIASDVNTHVSTRVM 239
           D   +  + DFGL  I+  +        +
Sbjct: 164 D-NGKVVITDFGLFSISGVLQAGRREDKL 191

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score = 99.3 bits (248), Expect = 5e-25
 Identities = 39/155 (25%), Positives = 57/155 (36%), Gaps = 30/155 (19%)

Query: 111 GFGYVHRGVLPNGKE----------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRML 160
            FG V +      K+            + F  E+  +SRV+H ++V L G     +   L
Sbjct: 20  AFGVVCKAKW-RAKDVAIKQIESESERKAFIVELRQLSRVNHPNIVKLYGACL--NPVCL 76

Query: 161 VYEFVLNNTLVFHLHGKGQ-PTMDWPTRIKIALGSAKGLAYLHD---------DL--ANI 208
           V E+    +L   LHG    P       +   L  ++G+AYLH          DL   N+
Sbjct: 77  VMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNL 136

Query: 209 LLDFKFE-AKVADFGLAKIASDVNTHVSTRVMGTF 242
           LL       K+ DFG A           T   G+ 
Sbjct: 137 LLVAGGTVLKICDFGTAC----DIQTHMTNNKGSA 167

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score = 98.1 bits (245), Expect = 9e-25
 Identities = 39/152 (25%), Positives = 67/152 (44%), Gaps = 25/152 (16%)

Query: 112 FGYVHRGVLPNGK-------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQR 158
           FG V++G   +G              +  + F+ EV ++ +  H +++  +GY T   Q 
Sbjct: 37  FGTVYKGKW-HGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYST-APQL 94

Query: 159 MLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD------DL--ANILL 210
            +V ++   ++L  HLH       +    I IA  +A+G+ YLH       DL   NI L
Sbjct: 95  AIVTQWCEGSSLYHHLHASE-TKFEMKKLIDIARQTARGMDYLHAKSIIHRDLKSNNIFL 153

Query: 211 DFKFEAKVADFGLAKI-ASDVNTHVSTRVMGT 241
                 K+ DFGLA   +    +H   ++ G+
Sbjct: 154 HEDNTVKIGDFGLATEKSRWSGSHQFEQLSGS 185

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score = 97.0 bits (242), Expect = 2e-24
 Identities = 39/166 (23%), Positives = 62/166 (37%), Gaps = 40/166 (24%)

Query: 111 GFGYVHRGV---------------LPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAG 155
           GFG V+R                   +  +     + E ++ + + H ++++L G     
Sbjct: 19  GFGKVYRAFWIGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKE 78

Query: 156 SQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD---------DL- 205
               LV EF     L   L GK    +     +  A+  A+G+ YLHD         DL 
Sbjct: 79  PNLCLVMEFARGGPLNRVLSGK---RIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLK 135

Query: 206 -ANILLDFKFE--------AKVADFGLAKIASDVNTHVSTRVMGTF 242
            +NIL+  K E         K+ DFGLA+      T   +   G +
Sbjct: 136 SSNILILQKVENGDLSNKILKITDFGLAREWH--RTTKMSAA-GAY 178

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score = 91.6 bits (228), Expect = 3e-22
 Identities = 35/164 (21%), Positives = 60/164 (36%), Gaps = 35/164 (21%)

Query: 111 GFGYVHRGVLPNGKE---------GEREFQAEVEI--ISRVHHKHLVSLVGYYTAGS--- 156
            +G V RG    G+           E+ +  E E+     + H++++  +          
Sbjct: 20  RYGEVWRGSW-QGENVAVKIFSSRDEKSWFRETELYNTVMLRHENILGFIASDMTSRHSS 78

Query: 157 -QRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD------------ 203
            Q  L+  +    +L  +L      T+D  + ++I L  A GLA+LH             
Sbjct: 79  TQLWLITHYHEMGSLYDYLQ---LTTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIA 135

Query: 204 --DL--ANILLDFKFEAKVADFGLAKIASDVNTHVSTRVMGTFG 243
             DL   NIL+    +  +AD GLA + S     +        G
Sbjct: 136 HRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQLDVGNNPRVG 179

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score = 92.1 bits (229), Expect = 4e-22
 Identities = 34/165 (20%), Positives = 60/165 (36%), Gaps = 36/165 (21%)

Query: 111 GFGYVHRG----------VLPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGS---- 156
            +G V  G          V    +E     + E+     + H++++  +     G+    
Sbjct: 49  RYGEVWMGKWRGEKVAVKVFFTTEEASWFRETEIYQTVLMRHENILGFIAADIKGTGSWT 108

Query: 157 QRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD------------- 203
           Q  L+ ++  N +L  +L      T+D  + +K+A  S  GL +LH              
Sbjct: 109 QLYLITDYHENGSLYDYLK---STTLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAH 165

Query: 204 -DL--ANILLDFKFEAKVADFGLAKI---ASDVNTHVSTRVMGTF 242
            DL   NIL+       +AD GLA      ++         +GT 
Sbjct: 166 RDLKSKNILVKKNGTCCIADLGLAVKFISDTNEVDIPPNTRVGTK 210

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score = 89.5 bits (222), Expect = 4e-21
 Identities = 56/238 (23%), Positives = 88/238 (36%), Gaps = 69/238 (28%)

Query: 49  PLPPPPFMSNSG-------GSGSNYSGSEAPILPQ---SPGLSLGFSKSTFTYEELARAT 98
           P    PF+S             ++ SGS  P+L Q   +  + L         E + +  
Sbjct: 3   PSLDRPFISEGTTLKDLIYDMTTSGSGSGLPLLVQRTIARTIVLQ--------ESIGK-- 52

Query: 99  DGFSDANLLRQDGFGYVHRGVLPNGKE---------GEREFQAEVEI--ISRVHHKHLVS 147
            G           FG V RG    G+E          ER +  E EI     + H++++ 
Sbjct: 53  -G----------RFGEVWRGKW-RGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILG 100

Query: 148 LVG----YYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD 203
            +          +Q  LV ++  + +L  +L+   + T+     IK+AL +A GLA+LH 
Sbjct: 101 FIAADNKDNGTWTQLWLVSDYHEHGSLFDYLN---RYTVTVEGMIKLALSTASGLAHLHM 157

Query: 204 --------------DL--ANILLDFKFEAKVADFGLAKI---ASDVNTHVSTRVMGTF 242
                         DL   NIL+       +AD GLA     A+D         +GT 
Sbjct: 158 EIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTK 215

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 88.5 bits (220), Expect = 1e-20
 Identities = 35/140 (25%), Positives = 59/140 (42%), Gaps = 23/140 (16%)

Query: 112 FGYVHRGVLPNG---------KEG-----EREFQAEVEIISRVHHKHLVSLVGYYTAGSQ 157
           FG V  G L            +E      + +F  E  I+ +  H ++V L+G  T    
Sbjct: 127 FGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQP 186

Query: 158 RMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD------DLA--NIL 209
             +V E V     +  L  +G   +   T +++   +A G+ YL        DLA  N L
Sbjct: 187 IYIVMELVQGGDFLTFLRTEG-ARLRVKTLLQMVGDAAAGMEYLESKCCIHRDLAARNCL 245

Query: 210 LDFKFEAKVADFGLAKIASD 229
           +  K   K++DFG+++  +D
Sbjct: 246 VTEKNVLKISDFGMSREEAD 265

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288

 Score = 86.5 bits (215), Expect = 2e-20
 Identities = 35/138 (25%), Positives = 58/138 (42%), Gaps = 20/138 (14%)

Query: 112 FGYVHRGVLPNG---------KEG---EREFQAEVEIISRVHHKHLVSLVGYYTAGSQRM 159
           +G V+ GV             KE      EF  E  ++  + H +LV L+G  T      
Sbjct: 26  YGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFY 85

Query: 160 LVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL------HDDLA--NILLD 211
           ++ EF+    L+ +L    +  +     + +A   +  + YL      H DLA  N L+ 
Sbjct: 86  IITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVG 145

Query: 212 FKFEAKVADFGLAKIASD 229
                KVADFGL+++ + 
Sbjct: 146 ENHLVKVADFGLSRLMTG 163

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287

 Score = 84.2 bits (209), Expect = 2e-19
 Identities = 40/155 (25%), Positives = 65/155 (41%), Gaps = 26/155 (16%)

Query: 112 FGYVHRGVLPNG-----------KEG-----EREFQAEVEIISRVHHKHLVSLVGYYTAG 155
           FG V +GV               K+G       E   E +I+ ++ + ++V L+G     
Sbjct: 23  FGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQ-A 81

Query: 156 SQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL------HDDLA--N 207
              MLV E      L   L GK    +      ++    + G+ YL      H DLA  N
Sbjct: 82  EALMLVMEMAGGGPLHKFLVGKR-EEIPVSNVAELLHQVSMGMKYLEEKNFVHRDLAARN 140

Query: 208 ILLDFKFEAKVADFGLAKIASDVNTHVSTRVMGTF 242
           +LL  +  AK++DFGL+K     +++ + R  G +
Sbjct: 141 VLLVNRHYAKISDFGLSKALGADDSYYTARSAGKW 175

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268

 Score = 83.8 bits (208), Expect = 2e-19
 Identities = 37/137 (27%), Positives = 59/137 (43%), Gaps = 20/137 (14%)

Query: 112 FGYVHRGVLPNG--------KEG---EREFQAEVEIISRVHHKHLVSLVGYYTAGSQRML 160
           FG V  G             KEG   E EF  E + + ++ H  LV   G  +      +
Sbjct: 21  FGVVKLGKWKGQYDVAVKMIKEGSMSEDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYI 80

Query: 161 VYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL------HDDLA--NILLDF 212
           V E++ N  L+ +L   G   ++    +++     +G+A+L      H DLA  N L+D 
Sbjct: 81  VTEYISNGCLLNYLRSHG-KGLEPSQLLEMCYDVCEGMAFLESHQFIHRDLAARNCLVDR 139

Query: 213 KFEAKVADFGLAKIASD 229
               KV+DFG+ +   D
Sbjct: 140 DLCVKVSDFGMTRYVLD 156

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 85.8 bits (212), Expect = 2e-19
 Identities = 54/267 (20%), Positives = 93/267 (34%), Gaps = 34/267 (12%)

Query: 8   QHWQQNVPPPAAHVVTQPPRSSPPPLVASSPPHSPVYTPSPPLPPPPF--MSNSGGSGSN 65
           ++ +         +    P SS      ++ P  P +  +   P      +++ G +   
Sbjct: 237 EYLKLKADGLIYCLKEACPNSSASNASGAAAPTLPAHPSTLTHPQRRIDTLNSDGYTPEP 296

Query: 66  YSGSEAPILPQSPGLSLGFSKSTFTYEELARATDGFSDANLLRQDG------FGYVHRGV 119
              +        P  +  F       EEL          NLL  D       FG V +GV
Sbjct: 297 ARITSPDKPRPMPMDTSVFESPFSDPEELKDKKLFLKRDNLLIADIELGCGNFGSVRQGV 356

Query: 120 LPNGK----------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYE 163
               K                    E   E +I+ ++ + ++V L+G        MLV E
Sbjct: 357 YRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQ-AEALMLVME 415

Query: 164 FVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL------HDDLA--NILLDFKFE 215
                 L   L GK    +      ++    + G+ YL      H +LA  N+LL  +  
Sbjct: 416 MAGGGPLHKFLVGKR-EEIPVSNVAELLHQVSMGMKYLEEKNFVHRNLAARNVLLVNRHY 474

Query: 216 AKVADFGLAKIASDVNTHVSTRVMGTF 242
           AK++DFGL+K     +++ + R  G +
Sbjct: 475 AKISDFGLSKALGADDSYYTARSAGKW 501

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278

 Score = 83.4 bits (207), Expect = 3e-19
 Identities = 37/132 (28%), Positives = 60/132 (45%), Gaps = 18/132 (13%)

Query: 112 FGYVHRGVLPNG-------KEG--EREFQAEVEIISRVHHKHLVSLVGYYTAGSQR-MLV 161
           FG V  G            K     + F AE  +++++ H +LV L+G          +V
Sbjct: 34  FGDVMLGDYRGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIV 93

Query: 162 YEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL------HDDLA--NILLDFK 213
            E++   +LV +L  +G+  +     +K +L   + + YL      H DLA  N+L+   
Sbjct: 94  TEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSED 153

Query: 214 FEAKVADFGLAK 225
             AKV+DFGL K
Sbjct: 154 NVAKVSDFGLTK 165

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267

 Score = 83.0 bits (206), Expect = 3e-19
 Identities = 41/137 (29%), Positives = 60/137 (43%), Gaps = 20/137 (14%)

Query: 112 FGYVHRGVLPNG--------KEG---EREFQAEVEIISRVHHKHLVSLVGYYTAGSQRML 160
           FG VH G   N         +EG   E +F  E E++ ++ H  LV L G     +   L
Sbjct: 21  FGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICL 80

Query: 161 VYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL------HDDLA--NILLDF 212
           V EF+ +  L  +L    +      T + + L   +G+AYL      H DLA  N L+  
Sbjct: 81  VTEFMEHGCLSDYLR-TQRGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGE 139

Query: 213 KFEAKVADFGLAKIASD 229
               KV+DFG+ +   D
Sbjct: 140 NQVIKVSDFGMTRFVLD 156

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327

 Score = 83.4 bits (207), Expect = 4e-19
 Identities = 32/141 (22%), Positives = 59/141 (41%), Gaps = 28/141 (19%)

Query: 112 FGYVHRGVLPNG-------------KEG-----EREFQAEVEIISRVHHKHLVSLVGYYT 153
           FG V++G+                 +E       +E   E  +++ V + H+  L+G   
Sbjct: 28  FGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICL 87

Query: 154 AGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL------HDDLA- 206
             S   L+ + +    L+ ++  + +  +     +   +  AKG+ YL      H DLA 
Sbjct: 88  -TSTVQLITQLMPFGCLLDYVR-EHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAA 145

Query: 207 -NILLDFKFEAKVADFGLAKI 226
            N+L+      K+ DFGLAK+
Sbjct: 146 RNVLVKTPQHVKITDFGLAKL 166

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656

 Score = 84.5 bits (209), Expect = 6e-19
 Identities = 46/219 (21%), Positives = 75/219 (34%), Gaps = 35/219 (15%)

Query: 39  PHSPVYTPSPPLPPPPFMSNSGGSGSNYSGSEAPILPQSPGLSLGFSKSTFTYEELARAT 98
           P        P +P        G      S SE     +       ++  +    E+ R  
Sbjct: 332 PQKEGERALPSIPKLANNEKQGVRSHTVSVSETDDYAEIIDEEDTYTMPSTRDYEIQR-- 389

Query: 99  DGFSDANLLRQDG---FGYVHRGVLPNGKEGE-----------------REFQAEVEIIS 138
                  L R  G   FG VH+G+  + +                     +F  E   + 
Sbjct: 390 ---ERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMR 446

Query: 139 RVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGL 198
           +  H H+V L+G  T  +   ++ E      L   L    + ++D  + I  A   +  L
Sbjct: 447 QFDHPHIVKLIGVIT-ENPVWIIMELCTLGELRSFLQ-VRKFSLDLASLILYAYQLSTAL 504

Query: 199 AYL------HDDLA--NILLDFKFEAKVADFGLAKIASD 229
           AYL      H D+A  N+L+      K+ DFGL++   D
Sbjct: 505 AYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMED 543

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283

 Score = 81.9 bits (203), Expect = 1e-18
 Identities = 36/137 (26%), Positives = 60/137 (43%), Gaps = 20/137 (14%)

Query: 112 FGYVHRGVLPNG--------KEG---EREFQAEVEIISRVHHKHLVSLVGYYTAGSQRML 160
           FG V  G             KEG   E EF  E +++  + H+ LV L G  T      +
Sbjct: 37  FGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFI 96

Query: 161 VYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL------HDDLA--NILLDF 212
           + E++ N  L+ +L  + +        +++     + + YL      H DLA  N L++ 
Sbjct: 97  ITEYMANGCLLNYLR-EMRHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVND 155

Query: 213 KFEAKVADFGLAKIASD 229
           +   KV+DFGL++   D
Sbjct: 156 QGVVKVSDFGLSRYVLD 172

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373

 Score = 82.8 bits (205), Expect = 1e-18
 Identities = 42/156 (26%), Positives = 61/156 (39%), Gaps = 26/156 (16%)

Query: 112 FGYVHRGVLPNGKEGE-----------------REFQAEVEIISRVHHKHLVSLVGYYTA 154
           FG V  G L    + E                 R+F  E  I+ +  H +++ L G  T 
Sbjct: 58  FGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTK 117

Query: 155 GSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL------HDDLA-- 206
               M+V E++ N +L   L  K          + +  G A G+ YL      H DLA  
Sbjct: 118 SKPVMIVTEYMENGSLDSFLR-KHDAQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAAR 176

Query: 207 NILLDFKFEAKVADFGLAKIASDVNTHVSTRVMGTF 242
           NIL++     KV+DFGL ++  D      T   G  
Sbjct: 177 NILINSNLVCKVSDFGLGRVLEDDPEAAYTTRGGKI 212

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 82.9 bits (205), Expect = 2e-18
 Identities = 34/138 (24%), Positives = 58/138 (42%), Gaps = 20/138 (14%)

Query: 112 FGYVHRGVLPNG---------KEG---EREFQAEVEIISRVHHKHLVSLVGYYTAGSQRM 159
           +G V+ GV             KE      EF  E  ++  + H +LV L+G  T      
Sbjct: 233 YGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFY 292

Query: 160 LVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL------HDDLA--NILLD 211
           ++ EF+    L+ +L    +  +     + +A   +  + YL      H +LA  N L+ 
Sbjct: 293 IITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRNLAARNCLVG 352

Query: 212 FKFEAKVADFGLAKIASD 229
                KVADFGL+++ + 
Sbjct: 353 ENHLVKVADFGLSRLMTG 370

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291

 Score = 81.1 bits (201), Expect = 2e-18
 Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 28/156 (17%)

Query: 112 FGYVHRGVLPNG-----------KEG------EREFQAEVEIISRVHHKHLVSLVGYYTA 154
           FG V +G                K        + E  AE  ++ ++ + ++V ++G    
Sbjct: 30  FGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICE- 88

Query: 155 GSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL------HDDLA-- 206
               MLV E      L  +L             I++    + G+ YL      H DLA  
Sbjct: 89  AESWMLVMEMAELGPLNKYLQQNRHVKD--KNIIELVHQVSMGMKYLEESNFVHRDLAAR 146

Query: 207 NILLDFKFEAKVADFGLAKIASDVNTHVSTRVMGTF 242
           N+LL  +  AK++DFGL+K       +   +  G +
Sbjct: 147 NVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKW 182

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281

 Score = 80.7 bits (200), Expect = 2e-18
 Identities = 37/144 (25%), Positives = 58/144 (40%), Gaps = 29/144 (20%)

Query: 112 FGYVHRGVLPNG------------KEG-----EREFQAEVEIISRVHHKHLVSLVGYYTA 154
           FG V+ GV  N             K+      + +F +E  I+  + H H+V L+G    
Sbjct: 25  FGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIE- 83

Query: 155 GSQRMLVYEFVLNNTLVFHL-HGKGQPTMDWPTRIKIALGSAKGLAYL------HDDLA- 206
                ++ E      L  +L   K    +   T +  +L   K +AYL      H D+A 
Sbjct: 84  EEPTWIIMELYPYGELGHYLERNKNSLKV--LTLVLYSLQICKAMAYLESINCVHRDIAV 141

Query: 207 -NILLDFKFEAKVADFGLAKIASD 229
            NIL+      K+ DFGL++   D
Sbjct: 142 RNILVASPECVKLGDFGLSRYIED 165

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333

 Score = 81.2 bits (201), Expect = 3e-18
 Identities = 41/158 (25%), Positives = 68/158 (43%), Gaps = 29/158 (18%)

Query: 112 FGYVHRGVL--PNG-----------KEG-----EREFQAEVEIISRVHHKHLVSLVGYYT 153
           FG V++G+L   +G           K G       +F  E  I+ +  H +++ L G  +
Sbjct: 57  FGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVIS 116

Query: 154 AGSQRMLVYEFVLNNTLVFHL-HGKGQPTMDWPTRIKIALGSAKGLAYL------HDDLA 206
                M++ E++ N  L   L    G+ ++     + +  G A G+ YL      H DLA
Sbjct: 117 KYKPMMIITEYMENGALDKFLREKDGEFSV--LQLVGMLRGIAAGMKYLANMNYVHRDLA 174

Query: 207 --NILLDFKFEAKVADFGLAKIASDVNTHVSTRVMGTF 242
             NIL++     KV+DFGL+++  D      T   G  
Sbjct: 175 ARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKI 212

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327

 Score = 80.9 bits (200), Expect = 4e-18
 Identities = 38/142 (26%), Positives = 61/142 (42%), Gaps = 28/142 (19%)

Query: 112 FGYVHRGVL-----------------PNGKEGEREFQAEVEIISRVHHKHLVSLVG--YY 152
           FG V                       +G + +R+FQ E++I+  +H   +V   G  Y 
Sbjct: 36  FGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYG 95

Query: 153 TAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL------HDDLA 206
                  LV E++ +  L   L  + +  +D    +  +    KG+ YL      H DLA
Sbjct: 96  PGRQSLRLVMEYLPSGCLRDFLQ-RHRARLDASRLLLYSSQICKGMEYLGSRRCVHRDLA 154

Query: 207 --NILLDFKFEAKVADFGLAKI 226
             NIL++ +   K+ADFGLAK+
Sbjct: 155 ARNILVESEAHVKIADFGLAKL 176

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291

 Score = 80.4 bits (199), Expect = 4e-18
 Identities = 39/142 (27%), Positives = 57/142 (40%), Gaps = 29/142 (20%)

Query: 112 FGYVHRGVL--PNG----------KEG-------EREFQAEVEIISRVHHKHLVSLVGYY 152
           FG V RG    P+G          K           +F  EV  +  + H++L+ L G  
Sbjct: 31  FGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVV 90

Query: 153 TAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL------HDDLA 206
                  +V E     +L+  L  K Q      T  + A+  A+G+ YL      H DLA
Sbjct: 91  L-TPPMKMVTELAPLGSLLDRLR-KHQGHFLLGTLSRYAVQVAEGMGYLESKRFIHRDLA 148

Query: 207 --NILLDFKFEAKVADFGLAKI 226
             N+LL  +   K+ DFGL + 
Sbjct: 149 ARNLLLATRDLVKIGDFGLMRA 170

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325

 Score = 80.8 bits (200), Expect = 4e-18
 Identities = 49/178 (27%), Positives = 75/178 (42%), Gaps = 37/178 (20%)

Query: 87  STFTYEELARATDGF------SDANLLRQDG---FGYVHRGVLPNGKEGE---------- 127
              TYEE  RA   F      S  ++ +  G    G V  G L    + +          
Sbjct: 28  EPHTYEEPGRAGRSFTREIEASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKA 87

Query: 128 -------REFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHL-HGKGQ 179
                  R+F +E  I+ +  H +++ L G  T G   M+V E++ N +L   L    GQ
Sbjct: 88  GYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMIVTEYMENGSLDTFLRTHDGQ 147

Query: 180 PTMDWPTRIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAKIASD 229
            T+     + +  G   G+ YL      H DLA  N+L+D     KV+DFGL+++  D
Sbjct: 148 FTI--MQLVGMLRGVGAGMRYLSDLGYVHRDLAARNVLVDSNLVCKVSDFGLSRVLED 203

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281

 Score = 80.0 bits (198), Expect = 5e-18
 Identities = 34/143 (23%), Positives = 57/143 (39%), Gaps = 27/143 (18%)

Query: 112 FGYVHRGVLPNGKEGE-----------------REFQAEVEIISRVHHKHLVSLVGYYTA 154
           FG VH+G+  + +                     +F  E   + +  H H+V L+G  T 
Sbjct: 28  FGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT- 86

Query: 155 GSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL------HDDLA-- 206
            +   ++ E      L   L    + ++D  + I  A   +  LAYL      H D+A  
Sbjct: 87  ENPVWIIMELCTLGELRSFLQ-VRKYSLDLASLILYAYQLSTALAYLESKRFVHRDIAAR 145

Query: 207 NILLDFKFEAKVADFGLAKIASD 229
           N+L+      K+ DFGL++   D
Sbjct: 146 NVLVSSNDCVKLGDFGLSRYMED 168

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 81.2 bits (201), Expect = 5e-18
 Identities = 37/132 (28%), Positives = 60/132 (45%), Gaps = 18/132 (13%)

Query: 112 FGYVHRGVLPNG-------KEG--EREFQAEVEIISRVHHKHLVSLVGYYTAGSQR-MLV 161
           FG V  G            K     + F AE  +++++ H +LV L+G          +V
Sbjct: 206 FGDVMLGDYRGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIV 265

Query: 162 YEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL------HDDLA--NILLDFK 213
            E++   +LV +L  +G+  +     +K +L   + + YL      H DLA  N+L+   
Sbjct: 266 TEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSED 325

Query: 214 FEAKVADFGLAK 225
             AKV+DFGL K
Sbjct: 326 NVAKVSDFGLTK 337

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295

 Score = 79.3 bits (196), Expect = 1e-17
 Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 28/142 (19%)

Query: 112 FGYVHRGVL-----------------PNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTA 154
           FG V                       + +E  R+F+ E+EI+  + H ++V   G   +
Sbjct: 23  FGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYS 82

Query: 155 GSQR--MLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL------HDDLA 206
             +R   L+ E++   +L  +L  K +  +D    ++      KG+ YL      H DLA
Sbjct: 83  AGRRNLKLIMEYLPYGSLRDYLQ-KHKERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLA 141

Query: 207 --NILLDFKFEAKVADFGLAKI 226
             NIL++ +   K+ DFGL K+
Sbjct: 142 TRNILVENENRVKIGDFGLTKV 163

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279

 Score = 78.8 bits (195), Expect = 1e-17
 Identities = 37/137 (27%), Positives = 59/137 (43%), Gaps = 20/137 (14%)

Query: 112 FGYVHRGVLPNG--------KEG---EREFQAEVEIISRVHHKHLVSLVGYYTAGSQRML 160
           FG V  G             K+G      F AE  ++ ++ H+ LV L    T      +
Sbjct: 26  FGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVT-QEPIYI 84

Query: 161 VYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL------HDDLA--NILLDF 212
           + E++ N +LV  L       +     + +A   A+G+A++      H DL   NIL+  
Sbjct: 85  ITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSD 144

Query: 213 KFEAKVADFGLAKIASD 229
               K+ADFGLA++  D
Sbjct: 145 TLSCKIADFGLARLIED 161

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 80.2 bits (198), Expect = 1e-17
 Identities = 38/137 (27%), Positives = 59/137 (43%), Gaps = 20/137 (14%)

Query: 112 FGYVHRGV-----------LPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRML 160
           FG V  G            L  G      F  E +++ ++ H+ LV L    +      +
Sbjct: 197 FGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVS-EEPIYI 255

Query: 161 VYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL------HDDLA--NILLDF 212
           V E++   +L+  L G+    +  P  + +A   A G+AY+      H DL   NIL+  
Sbjct: 256 VTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGE 315

Query: 213 KFEAKVADFGLAKIASD 229
               KVADFGLA++  D
Sbjct: 316 NLVCKVADFGLARLIED 332

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 79.7 bits (197), Expect = 2e-17
 Identities = 35/137 (25%), Positives = 52/137 (37%), Gaps = 20/137 (14%)

Query: 112 FGYVHRGVLPN-----------GKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRML 160
           FG V                  G      F AE  ++  + H  LV L    T      +
Sbjct: 201 FGEVWMATYNKHTKVAVKTMKPGSMSVEAFLAEANVMKTLQHDKLVKLHAVVT-KEPIYI 259

Query: 161 VYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL------HDDLA--NILLDF 212
           + EF+   +L+  L          P  I  +   A+G+A++      H DL   NIL+  
Sbjct: 260 ITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRDLRAANILVSA 319

Query: 213 KFEAKVADFGLAKIASD 229
               K+ADFGLA++  D
Sbjct: 320 SLVCKIADFGLARVIED 336

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373

 Score = 79.4 bits (196), Expect = 2e-17
 Identities = 52/242 (21%), Positives = 81/242 (33%), Gaps = 40/242 (16%)

Query: 17  PAAHVVTQPPRSSPPPLVASSPPHSPVYTPSPPLPPPPFMSNSGGSGSNYSGSEAPILPQ 76
           P  H      R           P       SP L     +     S    +GSE      
Sbjct: 6   PMGHHHHHHGRRRASVAAGILVP-----RGSPGLDGICSIEELSTSLYKKAGSENLYFQG 60

Query: 77  SPGLSLGFSKSTFTYEELARATDGFSDAN---LLRQDG---FGYVHRGVLPNGKEGE--- 127
           +  + +  S       +  +       +         G   FG V+ G L +    +   
Sbjct: 61  ANTVHIDLSALNPELVQAVQHVVIGPSSLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHC 120

Query: 128 --------------REFQAEVEIISRVHHKHLVSLVGYYT-AGSQRMLVYEFVLNNTLVF 172
                          +F  E  I+    H +++SL+G    +    ++V  ++ +  L  
Sbjct: 121 AVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRN 180

Query: 173 HLHG-KGQPTMDWPTRIKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGL 223
            +      PT+     I   L  AKG+ +L      H DLA  N +LD KF  KVADFGL
Sbjct: 181 FIRNETHNPTV--KDLIGFGLQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGL 238

Query: 224 AK 225
           A+
Sbjct: 239 AR 240

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302

 Score = 78.5 bits (194), Expect = 2e-17
 Identities = 34/143 (23%), Positives = 63/143 (44%), Gaps = 29/143 (20%)

Query: 112 FGYVHRGVLPNGKEGE------------------REFQAEVEIISRVHHKHLVSLVG--Y 151
           FG V         +                     + + E+EI+  ++H+++V   G   
Sbjct: 34  FGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICT 93

Query: 152 YTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL------HDDL 205
              G+   L+ EF+ + +L  +L  K +  ++   ++K A+   KG+ YL      H DL
Sbjct: 94  EDGGNGIKLIMEFLPSGSLKEYLP-KNKNKINLKQQLKYAVQICKGMDYLGSRQYVHRDL 152

Query: 206 A--NILLDFKFEAKVADFGLAKI 226
           A  N+L++ + + K+ DFGL K 
Sbjct: 153 AARNVLVESEHQVKIGDFGLTKA 175

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326

 Score = 78.6 bits (194), Expect = 2e-17
 Identities = 35/142 (24%), Positives = 61/142 (42%), Gaps = 28/142 (19%)

Query: 112 FGYVHRGVLPNGKEGE-----------------REFQAEVEIISRVHHKHLVSLVGYYTA 154
           FG V        ++                   R+F+ E+EI+  + H ++V   G   +
Sbjct: 54  FGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYS 113

Query: 155 GSQR--MLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL------HDDLA 206
             +R   L+ E++   +L  +L  K +  +D    ++      KG+ YL      H DLA
Sbjct: 114 AGRRNLKLIMEYLPYGSLRDYLQ-KHKERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLA 172

Query: 207 --NILLDFKFEAKVADFGLAKI 226
             NIL++ +   K+ DFGL K+
Sbjct: 173 TRNILVENENRVKIGDFGLTKV 194

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327

 Score = 78.5 bits (194), Expect = 3e-17
 Identities = 33/141 (23%), Positives = 62/141 (43%), Gaps = 28/141 (19%)

Query: 112 FGYVHRGVL-PNGKEGE-----------------REFQAEVEIISRVHHKHLVSLVGYYT 153
           FG V++G+  P G++ +                 +E   E  +++ V + H+  L+G   
Sbjct: 28  FGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICL 87

Query: 154 AGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL------HDDLA- 206
             S   L+ + +    L+ ++  + +  +     +   +  AKG+ YL      H DLA 
Sbjct: 88  -TSTVQLITQLMPFGCLLDYVR-EHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAA 145

Query: 207 -NILLDFKFEAKVADFGLAKI 226
            N+L+      K+ DFGLAK+
Sbjct: 146 RNVLVKTPQHVKITDFGLAKL 166

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289

 Score = 77.3 bits (191), Expect = 4e-17
 Identities = 31/150 (20%), Positives = 59/150 (39%), Gaps = 37/150 (24%)

Query: 112 FGYVHRGVLPNG----------------KEG----EREFQAEVEIISRVHHKHLVSLVGY 151
           F  + +GV                     +        F     ++S++ HKHLV   G 
Sbjct: 21  FTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGV 80

Query: 152 YTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL------HDDL 205
              G + +LV EFV   +L  +L  K +  ++   ++++A   A  + +L      H ++
Sbjct: 81  CVCGDENILVQEFVKFGSLDTYLK-KNKNCINILWKLEVAKQLAAAMHFLEENTLIHGNV 139

Query: 206 A--NILLDFKFE--------AKVADFGLAK 225
              NILL  + +         K++D G++ 
Sbjct: 140 CAKNILLIREEDRKTGNPPFIKLSDPGISI 169

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325

 Score = 77.4 bits (191), Expect = 6e-17
 Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 28/141 (19%)

Query: 112 FGYVHRGVL-PNGKEGE-----------------REFQAEVEIISRVHHKHLVSLVGYYT 153
           FG VH+GV  P G+  +                 +     +  I  + H H+V L+G   
Sbjct: 26  FGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCP 85

Query: 154 AGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL------HDDLA- 206
            GS   LV +++   +L+ H+  + +  +     +   +  AKG+ YL      H +LA 
Sbjct: 86  -GSSLQLVTQYLPLGSLLDHVR-QHRGALGPQLLLNWGVQIAKGMYYLEEHGMVHRNLAA 143

Query: 207 -NILLDFKFEAKVADFGLAKI 226
            N+LL    + +VADFG+A +
Sbjct: 144 RNVLLKSPSQVQVADFGVADL 164

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298

 Score = 76.9 bits (190), Expect = 6e-17
 Identities = 40/141 (28%), Positives = 58/141 (41%), Gaps = 29/141 (20%)

Query: 112 FGYVHRGVLPNG------------KEG-----EREFQAEVEIISRVHHKHLVSLVGYYTA 154
           FG V+ G L +                       +F  E  I+    H +++SL+G    
Sbjct: 38  FGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLR 97

Query: 155 G-SQRMLVYEFVLNNTLVFHLHG-KGQPTMDWPTRIKIALGSAKGLAYL------HDDLA 206
                ++V  ++ +  L   +      PT+     I   L  AKG+ YL      H DLA
Sbjct: 98  SEGSPLVVLPYMKHGDLRNFIRNETHNPTV--KDLIGFGLQVAKGMKYLASKKFVHRDLA 155

Query: 207 --NILLDFKFEAKVADFGLAK 225
             N +LD KF  KVADFGLA+
Sbjct: 156 ARNCMLDEKFTVKVADFGLAR 176

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318

 Score = 76.6 bits (189), Expect = 1e-16
 Identities = 35/143 (24%), Positives = 58/143 (40%), Gaps = 31/143 (21%)

Query: 112 FGYVHRGVLPNGKEGE------------------REFQAEVEIISRVHHKHLVSLVG--Y 151
           FG V         +G                     ++ E++I+  ++H+H++   G   
Sbjct: 44  FGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCE 103

Query: 152 YTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL------HDDL 205
               +   LV E+V   +L  +L    + ++     +  A    +G+AYL      H DL
Sbjct: 104 DAGAASLQLVMEYVPLGSLRDYLP---RHSIGLAQLLLFAQQICEGMAYLHAQHYIHRDL 160

Query: 206 A--NILLDFKFEAKVADFGLAKI 226
           A  N+LLD     K+ DFGLAK 
Sbjct: 161 AARNVLLDNDRLVKIGDFGLAKA 183

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 76.8 bits (189), Expect = 2e-16
 Identities = 38/137 (27%), Positives = 59/137 (43%), Gaps = 20/137 (14%)

Query: 112 FGYVHRGV-----------LPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRML 160
           FG V  G            L  G      F  E +++ ++ H+ LV L    +      +
Sbjct: 280 FGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVS-EEPIYI 338

Query: 161 VYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL------HDDLA--NILLDF 212
           V E++   +L+  L G+    +  P  + +A   A G+AY+      H DL   NIL+  
Sbjct: 339 VTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGE 398

Query: 213 KFEAKVADFGLAKIASD 229
               KVADFGLA++  D
Sbjct: 399 NLVCKVADFGLARLIED 415

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298

 Score = 75.0 bits (185), Expect = 3e-16
 Identities = 34/141 (24%), Positives = 59/141 (41%), Gaps = 29/141 (20%)

Query: 112 FGYVHRGVLPNGKEGE-----------------REFQAEVEIISRVHHKHLVSLVGYYTA 154
           FG V+ G   +  +                     F  E  ++  ++H ++++L+G    
Sbjct: 34  FGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLP 93

Query: 155 GS-QRMLVYEFVLNNTLVFHLHG-KGQPTMDWPTRIKIALGSAKGLAYL------HDDLA 206
                 ++  ++ +  L+  +   +  PT+     I   L  A+G+ YL      H DLA
Sbjct: 94  PEGLPHVLLPYMCHGDLLQFIRSPQRNPTV--KDLISFGLQVARGMEYLAEQKFVHRDLA 151

Query: 207 --NILLDFKFEAKVADFGLAK 225
             N +LD  F  KVADFGLA+
Sbjct: 152 ARNCMLDESFTVKVADFGLAR 172

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322

 Score = 74.6 bits (184), Expect = 5e-16
 Identities = 35/149 (23%), Positives = 57/149 (38%), Gaps = 35/149 (23%)

Query: 112 FGYVHRGVLPNGKEGE-------------------REFQAEVEIISRVHHKHLVSLVGYY 152
           FG V+ GV     + E                    EF  E  ++   +  H+V L+G  
Sbjct: 38  FGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVV 97

Query: 153 TAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTR--------IKIALGSAKGLAYL--- 201
           + G   +++ E +    L  +L        + P          I++A   A G+AYL   
Sbjct: 98  SQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNAN 157

Query: 202 ---HDDLA--NILLDFKFEAKVADFGLAK 225
              H DLA  N ++   F  K+ DFG+ +
Sbjct: 158 KFVHRDLAARNCMVAEDFTVKIGDFGMTR 186

>3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297

 Score = 73.4 bits (181), Expect = 1e-15
 Identities = 36/153 (23%), Positives = 57/153 (37%), Gaps = 40/153 (26%)

Query: 112 FGYVHRGVLPNG--------------KEG----EREFQAEVEIISRVHHKHLVSLVGYYT 153
           FG V      N               K+      ++FQ E E+++ + H+H+V   G   
Sbjct: 28  FGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKFYGVCG 87

Query: 154 AGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTR--------------IKIALGSAKGLA 199
            G   ++V+E++ +  L   L   G   M                   + IA   A G+ 
Sbjct: 88  DGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMV 147

Query: 200 YL------HDDLA--NILLDFKFEAKVADFGLA 224
           YL      H DLA  N L+      K+ DFG++
Sbjct: 148 YLASQHFVHRDLATRNCLVGANLLVKIGDFGMS 180

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327

 Score = 73.9 bits (182), Expect = 1e-15
 Identities = 37/149 (24%), Positives = 58/149 (38%), Gaps = 35/149 (23%)

Query: 112 FGYVHRGVLPNG--------------KEG-----EREFQAEVEIISRVHHKHLVSLVGYY 152
           FG V+ G +                  E      E +F  E  IIS+ +H+++V  +G  
Sbjct: 43  FGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVS 102

Query: 153 TAGSQRMLVYEFV----LNNTLVFHLHGKGQP-TMDWPTRIKIALGSAKGLAYL------ 201
                R ++ E +    L + L        QP ++     + +A   A G  YL      
Sbjct: 103 LQSLPRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHFI 162

Query: 202 HDDLA--NILLDFKFE---AKVADFGLAK 225
           H D+A  N LL        AK+ DFG+A+
Sbjct: 163 HRDIAARNCLLTCPGPGRVAKIGDFGMAR 191

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323

 Score = 73.5 bits (181), Expect = 2e-15
 Identities = 34/150 (22%), Positives = 50/150 (33%), Gaps = 36/150 (24%)

Query: 112 FGYVHRGVLPNGKEGE------------------REFQAEVEIISRVHHKHLVSLVG--- 150
           FG V    L                          EF  E   +    H H+  LVG   
Sbjct: 36  FGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSL 95

Query: 151 ---YYTAGSQRMLVYEFV----LNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL-- 201
                      M++  F+    L+  L+    G+    +   T ++  +  A G+ YL  
Sbjct: 96  RSRAKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSS 155

Query: 202 ----HDDLA--NILLDFKFEAKVADFGLAK 225
               H DLA  N +L       VADFGL++
Sbjct: 156 RNFIHRDLAARNCMLAEDMTVCVADFGLSR 185

>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289

 Score = 73.0 bits (180), Expect = 2e-15
 Identities = 34/154 (22%), Positives = 57/154 (37%), Gaps = 41/154 (26%)

Query: 112 FGYVHRGVLPNGKEGE-------------------REFQAEVEIISRVHHKHLVSLVGYY 152
           FG V++G L     GE                    EF+ E  + +R+ H ++V L+G  
Sbjct: 22  FGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVV 81

Query: 153 TAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTR--------------IKIALGSAKGL 198
           T      +++ +  +  L   L  +   +    T               + +    A G+
Sbjct: 82  TKDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGM 141

Query: 199 AYL------HDDLA--NILLDFKFEAKVADFGLA 224
            YL      H DLA  N+L+  K   K++D GL 
Sbjct: 142 EYLSSHHVVHKDLATRNVLVYDKLNVKISDLGLF 175

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313

 Score = 73.1 bits (180), Expect = 2e-15
 Identities = 35/149 (23%), Positives = 54/149 (36%), Gaps = 35/149 (23%)

Query: 112 FGYVHRGVLPNGKEGE------------------REFQAEVEIISRVHHKHLVSLVG--- 150
           FG V  G L                          EF +E   +    H +++ L+G   
Sbjct: 47  FGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCI 106

Query: 151 --YYTAGSQRMLVYEFV----LNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL--- 201
                   + M++  F+    L+  L++     G   +   T +K  +  A G+ YL   
Sbjct: 107 EMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSNR 166

Query: 202 ---HDDLA--NILLDFKFEAKVADFGLAK 225
              H DLA  N +L       VADFGL+K
Sbjct: 167 NFLHRDLAARNCMLRDDMTVCVADFGLSK 195

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329

 Score = 72.3 bits (178), Expect = 4e-15
 Identities = 36/152 (23%), Positives = 57/152 (37%), Gaps = 39/152 (25%)

Query: 112 FGYVHRGVLPNG--------------KEG----EREFQAEVEIISRVHHKHLVSLVGYYT 153
           FG V      N               KE      ++FQ E E+++ + H+H+V   G  T
Sbjct: 54  FGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCT 113

Query: 154 AGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTR-------------IKIALGSAKGLAY 200
            G   ++V+E++ +  L   L   G                      + +A   A G+ Y
Sbjct: 114 EGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVY 173

Query: 201 L------HDDLA--NILLDFKFEAKVADFGLA 224
           L      H DLA  N L+      K+ DFG++
Sbjct: 174 LAGLHFVHRDLATRNCLVGQGLVVKIGDFGMS 205

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367

 Score = 71.7 bits (176), Expect = 8e-15
 Identities = 37/149 (24%), Positives = 58/149 (38%), Gaps = 35/149 (23%)

Query: 112 FGYVHRGVLPNG--------------KEG-----EREFQAEVEIISRVHHKHLVSLVGYY 152
           FG V+ G +                  E      E +F  E  IIS+ +H+++V  +G  
Sbjct: 84  FGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVS 143

Query: 153 TAGSQRMLVYEFV----LNNTLVFHLHGKGQP-TMDWPTRIKIALGSAKGLAYL------ 201
                R ++ E +    L + L        QP ++     + +A   A G  YL      
Sbjct: 144 LQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHFI 203

Query: 202 HDDLA--NILLDFKFE---AKVADFGLAK 225
           H D+A  N LL        AK+ DFG+A+
Sbjct: 204 HRDIAARNCLLTCPGPGRVAKIGDFGMAR 232

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327

 Score = 71.2 bits (175), Expect = 1e-14
 Identities = 37/153 (24%), Positives = 61/153 (39%), Gaps = 39/153 (25%)

Query: 112 FGYVHRGVLPNG-----------KEG-----EREFQAEVEIISRV-HHKHLVSLVGYYTA 154
           FG V +  +              KE       R+F  E+E++ ++ HH ++++L+G    
Sbjct: 38  FGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEH 97

Query: 155 GSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTR--------------IKIALGSAKGLAY 200
                L  E+  +  L+  L        D                  +  A   A+G+ Y
Sbjct: 98  RGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDY 157

Query: 201 L------HDDLA--NILLDFKFEAKVADFGLAK 225
           L      H DLA  NIL+   + AK+ADFGL++
Sbjct: 158 LSQKQFIHRDLAARNILVGENYVAKIADFGLSR 190

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343

 Score = 68.1 bits (167), Expect = 1e-13
 Identities = 38/163 (23%), Positives = 60/163 (36%), Gaps = 49/163 (30%)

Query: 112 FGYVHRGVLPNGKEGE-------------------REFQAEVEIISRVHHKHLVSLVGYY 152
           FG V +   P     E                    +FQ E  +++   + ++V L+G  
Sbjct: 60  FGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVC 119

Query: 153 TAGSQRMLVYEFV----LNNTLVFH------------------LHGKGQPTMDWPTRIKI 190
             G    L++E++    LN  L                     +   G P +    ++ I
Sbjct: 120 AVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCI 179

Query: 191 ALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAK 225
           A   A G+AYL      H DLA  N L+      K+ADFGL++
Sbjct: 180 ARQVAAGMAYLSERKFVHRDLATRNCLVGENMVVKIADFGLSR 222

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370

 Score = 68.2 bits (167), Expect = 2e-13
 Identities = 53/269 (19%), Positives = 88/269 (32%), Gaps = 66/269 (24%)

Query: 4   GGRQQHWQQNVPPPAAHVVTQPPRSSPPPLVASSPPHSPVYTPSPPLPPPPFMSNSGGSG 63
           G    H   +  PPA H +T+  R      V  S   S     + PL       +S    
Sbjct: 2   GSSHHHHHHSQDPPAVHKLTK--RIPLRRQVTVSAESSSSMNSNTPLVRITTRLSSTADT 59

Query: 64  SNYSGSEAPILPQSPGLSLGFSKSTFTYEELARATDGFSDANLLRQDG---FGYVHRGVL 120
              +G     LP+ P              E  R         L +  G   FG V     
Sbjct: 60  PMLAGVSEYELPEDPKW------------EFPR-----DKLTLGKPLGEGCFGQVVMAEA 102

Query: 121 PNG----------------KEG-----EREFQAEVEIISRV-HHKHLVSLVGYYTAGSQR 158
                              K+        +  +E+E++  +  HK++++L+G  T     
Sbjct: 103 VGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPL 162

Query: 159 MLVYEFVLNNTL--------------VFHLHGKGQPTMDWPTRIKIALGSAKGLAYL--- 201
            ++ E+     L               + ++   +  M +   +      A+G+ YL   
Sbjct: 163 YVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQ 222

Query: 202 ---HDDLA--NILLDFKFEAKVADFGLAK 225
              H DLA  N+L+      K+ADFGLA+
Sbjct: 223 KCIHRDLAARNVLVTENNVMKIADFGLAR 251

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333

 Score = 66.9 bits (164), Expect = 4e-13
 Identities = 35/153 (22%), Positives = 60/153 (39%), Gaps = 40/153 (26%)

Query: 112 FGYVHRGVLPNG--------------KEG-----EREFQAEVEIISRV-HHKHLVSLVGY 151
           FG V                      K       +    +E++I+S +  H+++V+L+G 
Sbjct: 59  FGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGA 118

Query: 152 YTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTR------------IKIALGSAKGLA 199
            T G   +++ E+     L+  L  K +     P              +  +   A+G+A
Sbjct: 119 CTHGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMA 178

Query: 200 YL------HDDLA--NILLDFKFEAKVADFGLA 224
           +L      H D+A  N+LL     AK+ DFGLA
Sbjct: 179 FLASKNCIHRDVAARNVLLTNGHVAKIGDFGLA 211

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 65.1 bits (159), Expect = 1e-12
 Identities = 33/156 (21%), Positives = 56/156 (35%), Gaps = 16/156 (10%)

Query: 100 GFSDANLLR--QDGFGYVHRGVLPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQ 157
           GFS  +L+    DG  Y  + +L + ++   E Q E ++    +H +++ LV Y      
Sbjct: 41  GFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLRERG 100

Query: 158 RM----LVYEFVLNNTLVFHLHGKGQPTMDWPTR--IKIALGSAKGLAYLHD------DL 205
                 L+  F    TL   +               + + LG  +GL  +H       DL
Sbjct: 101 AKHEAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHAKGYAHRDL 160

Query: 206 --ANILLDFKFEAKVADFGLAKIASDVNTHVSTRVM 239
              NILL  + +  + D G    A          + 
Sbjct: 161 KPTNILLGDEGQPVLMDLGSMNQACIHVEGSRQALT 196

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* Length = 314

 Score = 64.2 bits (157), Expect = 2e-12
 Identities = 32/163 (19%), Positives = 58/163 (35%), Gaps = 49/163 (30%)

Query: 112 FGYVHRGVLPNG--------------KEG-----EREFQAEVEIISRVHHKHLVSLVGYY 152
           FG V +    +               KE       R+  +E  ++ +V+H H++ L G  
Sbjct: 36  FGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGAC 95

Query: 153 TAGSQRMLVYEFVLN----------------------NTLVFHLHGKGQPTMDWPTRIKI 190
           +     +L+ E+                         +     L    +  +     I  
Sbjct: 96  SQDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISF 155

Query: 191 ALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAK 225
           A   ++G+ YL      H DLA  NIL+    + K++DFGL++
Sbjct: 156 AWQISQGMQYLAEMKLVHRDLAARNILVAEGRKMKISDFGLSR 198

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334

 Score = 63.8 bits (156), Expect = 3e-12
 Identities = 31/158 (19%), Positives = 58/158 (36%), Gaps = 44/158 (27%)

Query: 112 FGYVHRGVLPNG----------------KEG-----EREFQAEVEIISRV-HHKHLVSLV 149
           FG V                        K+        +  +E+E++  +  HK++++L+
Sbjct: 48  FGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLL 107

Query: 150 GYYTAGSQRMLVYEFVLNNTL--------------VFHLHGKGQPTMDWPTRIKIALGSA 195
           G  T      ++ E+     L               + ++   +  M +   +      A
Sbjct: 108 GACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLA 167

Query: 196 KGLAYL------HDDLA--NILLDFKFEAKVADFGLAK 225
           +G+ YL      H DLA  N+L+      K+ADFGLA+
Sbjct: 168 RGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLAR 205

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score = 63.6 bits (155), Expect = 4e-12
 Identities = 22/116 (18%), Positives = 53/116 (45%), Gaps = 15/116 (12%)

Query: 133 EVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIAL 192
           E++II+ + +++ ++  G  T   +  ++YE++ N++++           ++   I I +
Sbjct: 93  ELQIITDIKNEYCLTCEGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQV 152

Query: 193 GS------AKGLAYLHD-------DL--ANILLDFKFEAKVADFGLAKIASDVNTH 233
                       +Y+H+       D+  +NIL+D     K++DFG ++   D    
Sbjct: 153 IKCIIKSVLNSFSYIHNEKNICHRDVKPSNILMDKNGRVKLSDFGESEYMVDKKIK 208

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313

 Score = 62.7 bits (153), Expect = 1e-11
 Identities = 32/157 (20%), Positives = 59/157 (37%), Gaps = 44/157 (28%)

Query: 112 FGYVHRGVLPNGKEGE-------------------REFQAEVEIISRV-HHKHLVSLVGY 151
           FG V         + +                       +E++++S + +H ++V+L+G 
Sbjct: 36  FGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGA 95

Query: 152 YTAGSQRMLVYEFV----------------LNNTLVFHLHGKGQPTMDWPTRIKIALGSA 195
            T G   +++ E+                 + +     +    +  +D    +  +   A
Sbjct: 96  CTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVA 155

Query: 196 KGLAYL------HDDLA--NILLDFKFEAKVADFGLA 224
           KG+A+L      H DLA  NILL      K+ DFGLA
Sbjct: 156 KGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLA 192

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316

 Score = 62.3 bits (152), Expect = 1e-11
 Identities = 39/157 (24%), Positives = 59/157 (37%), Gaps = 43/157 (27%)

Query: 112 FGYVHRGVLPNGKEGE-------------------REFQAEVEIISRV-HHKHLVSLVGY 151
           FG V         +                     R   +E++I+  + HH ++V+L+G 
Sbjct: 40  FGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGA 99

Query: 152 YT-AGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTR--------------IKIALGSAK 196
            T  G   M++ EF     L  +L  K    + +                 I  +   AK
Sbjct: 100 CTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAK 159

Query: 197 GLAYL------HDDLA--NILLDFKFEAKVADFGLAK 225
           G+ +L      H DLA  NILL  K   K+ DFGLA+
Sbjct: 160 GMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLAR 196

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382

 Score = 61.6 bits (150), Expect = 2e-11
 Identities = 33/158 (20%), Positives = 59/158 (37%), Gaps = 44/158 (27%)

Query: 112 FGYVHRGVLPNG----------------KEG-----EREFQAEVEIISRV-HHKHLVSLV 149
           FG V                        K         +  +E+E++  +  HK++++L+
Sbjct: 82  FGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLL 141

Query: 150 GYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTR--------------IKIALGSA 195
           G  T      ++ E+     L  +L  +  P +++                 +  A   A
Sbjct: 142 GACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVA 201

Query: 196 KGLAYL------HDDLA--NILLDFKFEAKVADFGLAK 225
           +G+ YL      H DLA  N+L+      K+ADFGLA+
Sbjct: 202 RGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLAR 239

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 Length = 344

 Score = 60.8 bits (148), Expect = 4e-11
 Identities = 33/162 (20%), Positives = 59/162 (36%), Gaps = 49/162 (30%)

Query: 112 FGYVHRGVLPNG--------------KEG-----EREFQAEVEIISRV-HHKHLVSLVGY 151
           FG V                      KE           +E+++++++  H+++V+L+G 
Sbjct: 58  FGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGA 117

Query: 152 YTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTR---------------------IKI 190
            T      L++E+     L+ +L  K +   +                         +  
Sbjct: 118 CTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCF 177

Query: 191 ALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLA 224
           A   AKG+ +L      H DLA  N+L+      K+ DFGLA
Sbjct: 178 AYQVAKGMEFLEFKSCVHRDLAARNVLVTHGKVVKICDFGLA 219

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score = 59.5 bits (145), Expect = 9e-11
 Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 11/101 (10%)

Query: 133 EVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIA- 191
           EV+I  ++ H  ++ L  Y+   +   LV E   N  +  +L  + +P  +   R  +  
Sbjct: 61  EVKIHCQLKHPSILELYNYFEDSNYVYLVLEMCHNGEMNRYLKNRVKPFSENEARHFMHQ 120

Query: 192 LGSAKGLAYLHD------DL--ANILLDFKFEAKVADFGLA 224
           +    G+ YLH       DL  +N+LL      K+ADFGLA
Sbjct: 121 I--ITGMLYLHSHGILHRDLTLSNLLLTRNMNIKIADFGLA 159

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 59.3 bits (144), Expect = 1e-10
 Identities = 22/131 (16%), Positives = 49/131 (37%), Gaps = 10/131 (7%)

Query: 120 LPNGKEGEREF-QAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKG 178
           +      ERE  + EV +++ + H ++V     +       +V ++     L   ++ + 
Sbjct: 59  ISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMDYCEGGDLFKRINAQK 118

Query: 179 QPTMDWPTRIKIALGSAKGLAYLHD------DL--ANILLDFKFEAKVADFGLAKIASDV 230
                    +   +     L ++HD      D+   NI L      ++ DFG+A++ +  
Sbjct: 119 GVLFQEDQILDWFVQICLALKHVHDRKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNST 178

Query: 231 NTHVSTRVMGT 241
                  + GT
Sbjct: 179 VELARACI-GT 188

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 58.9 bits (143), Expect = 2e-10
 Identities = 33/168 (19%), Positives = 56/168 (33%), Gaps = 39/168 (23%)

Query: 106 LLRQDGFGYVHRG---------------VLPNGKEGEREFQAEVEIISRVHHKHLVSLVG 150
            + +  F  V++G                    K   + F+ E E++  + H ++V    
Sbjct: 33  EIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYD 92

Query: 151 YYTAGSQRM----LVYEFVLNNTLVFHL--HGKGQPTMDWPTRIKIALGSAKGLAYLHD- 203
            + +  +      LV E + + TL  +L         M             KGL +LH  
Sbjct: 93  SWESTVKGKKCIVLVTELMTSGTLKTYLKRFKV----MKIKVLRSWCRQILKGLQFLHTR 148

Query: 204 -------DL--ANILLDFKF-EAKVADFGLAKIASDVNTHVSTRVMGT 241
                  DL   NI +       K+ D GLA +        +  V+GT
Sbjct: 149 TPPIIHRDLKCDNIFITGPTGSVKIGDLGLATL---KRASFAKAVIGT 193

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score = 58.5 bits (142), Expect = 2e-10
 Identities = 37/156 (23%), Positives = 60/156 (38%), Gaps = 30/156 (19%)

Query: 112 FGYVHRGV-LPNG------------KEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQR 158
           +G V+ G  L N                 +    E+ +   + HK++V  +G ++     
Sbjct: 35  YGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFI 94

Query: 159 MLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKI----ALGSAKGLAYLHD------DL--A 206
            +  E V   +L   L  K  P  D    I       L   +GL YLHD      D+   
Sbjct: 95  KIFMEQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQIL---EGLKYLHDNQIVHRDIKGD 151

Query: 207 NILLDFKF-EAKVADFGLAKIASDVNTHVSTRVMGT 241
           N+L++      K++DFG +K  + +N    T   GT
Sbjct: 152 NVLINTYSGVLKISDFGTSKRLAGINPCTET-FTGT 186

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} Length = 294

 Score = 58.0 bits (141), Expect = 3e-10
 Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 10/120 (8%)

Query: 130 FQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIK 189
           F+ EV   S++ H+++VS++          LV E++   TL  ++   G   +   T I 
Sbjct: 58  FEREVHNSSQLSHQNIVSMIDVDEEDDCYYLVMEYIEGPTLSEYIESHGP--LSVDTAIN 115

Query: 190 IALGSAKGLAYLHD------DL--ANILLDFKFEAKVADFGLAKIASDVNTHVSTRVMGT 241
                  G+ + HD      D+   NIL+D     K+ DFG+AK  S+ +   +  V+GT
Sbjct: 116 FTNQILDGIKHAHDMRIVHRDIKPQNILIDSNKTLKIFDFGIAKALSETSLTQTNHVLGT 175

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score = 58.1 bits (141), Expect = 3e-10
 Identities = 44/214 (20%), Positives = 68/214 (31%), Gaps = 41/214 (19%)

Query: 25  PPRSSPPPLVASSPPHSPVYTPSPPLPPPPFMSNSGGSGSNYSGSEAPILPQSPGLSLGF 84
           P  + P                +PP    P +     S   Y            G  LG 
Sbjct: 2   PAPADPGKAGVPGVAAPGAPAAAPPAKEIPEVLVDPRSRRRYV----------RGRFLG- 50

Query: 85  SKSTFT--YEELARATDGFSDANLLRQDGFGY----VHRGVLPNGKEGEREFQAEVEIIS 138
            K  F   +E     +D              +    V + +L    + E+    E+ I  
Sbjct: 51  -KGGFAKCFE----ISD--------ADTKEVFAGKIVPKSLLLKPHQREK-MSMEISIHR 96

Query: 139 RVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGL 198
            + H+H+V   G++       +V E     +L   LH + +   +   R         G 
Sbjct: 97  SLAHQHVVGFHGFFEDNDFVFVVLELCRRRSL-LELHKRRKALTEPEAR-YYLRQIVLGC 154

Query: 199 AYLHD------DL--ANILLDFKFEAKVADFGLA 224
            YLH       DL   N+ L+   E K+ DFGLA
Sbjct: 155 QYLHRNRVIHRDLKLGNLFLNEDLEVKIGDFGLA 188

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score = 57.6 bits (140), Expect = 4e-10
 Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 12/116 (10%)

Query: 127 EREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPT 186
           E + + E+EI S + H +++ +  Y+    +  L+ EF     L   L   G+   +  +
Sbjct: 58  EHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYLMLEFAPRGELYKELQKHGRFD-EQRS 116

Query: 187 RIKIA-LGSAKGLAYLHD------DLA--NILLDFKFEAKVADFGLAKIASDVNTH 233
              +  L  A  L Y H+      D+   N+L+ +K E K+ADFG +  A  +   
Sbjct: 117 ATFMEELADA--LHYCHERKVIHRDIKPENLLMGYKGELKIADFGWSVHAPSLRRR 170

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score = 57.2 bits (139), Expect = 5e-10
 Identities = 29/109 (26%), Positives = 44/109 (40%), Gaps = 10/109 (9%)

Query: 133 EVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIAL 192
           EVEI S + H +++ L GY+   ++  L+ E+    T+   L        D         
Sbjct: 59  EVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLS--KFDEQRTATYIT 116

Query: 193 GSAKGLAYLHD------DL--ANILLDFKFEAKVADFGLAKIASDVNTH 233
             A  L+Y H       D+   N+LL    E K+ADFG +  A      
Sbjct: 117 ELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRT 165

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 55.4 bits (134), Expect = 2e-09
 Identities = 36/164 (21%), Positives = 64/164 (39%), Gaps = 35/164 (21%)

Query: 111 GFGYVHRGV-LPNGKE--------GEREFQAEVEIISRVHHKHLVSLVGYY--------- 152
           GFG V +     +GK            + + EV+ ++++ H ++V   G +         
Sbjct: 23  GFGQVFKAKHRIDGKTYVIKRVKYNNEKAEREVKALAKLDHVNIVHYNGCWDGFDYDPET 82

Query: 153 ----TAGSQRMLVY---EFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD-- 203
               ++ S+   ++   EF    TL   +  +    +D    +++     KG+ Y+H   
Sbjct: 83  SSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSKK 142

Query: 204 ----DL--ANILLDFKFEAKVADFGLAKIASDVNTHVSTRVMGT 241
               DL  +NI L    + K+ DFGL       N    TR  GT
Sbjct: 143 LINRDLKPSNIFLVDTKQVKIGDFGLVTSLK--NDGKRTRSKGT 184

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score = 54.1 bits (131), Expect = 6e-09
 Identities = 31/110 (28%), Positives = 45/110 (40%), Gaps = 11/110 (10%)

Query: 124 KEGERE-FQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTM 182
           K  +RE    E+ I   + H+H+V   G++       +V E     +L   LH K +  +
Sbjct: 55  KPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVVLELCRRRSL-LELH-KRRKAL 112

Query: 183 DWPTRIKIALGSAKGLAYLHD------DL--ANILLDFKFEAKVADFGLA 224
             P           G  YLH       DL   N+ L+   E K+ DFGLA
Sbjct: 113 TEPEARYYLRQIVLGCQYLHRNRVIHRDLKLGNLFLNEDLEVKIGDFGLA 162

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 54.2 bits (131), Expect = 6e-09
 Identities = 24/132 (18%), Positives = 52/132 (39%), Gaps = 12/132 (9%)

Query: 120 LPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHL--HGK 177
           L + K    +   E++++ +++H +++     +   ++  +V E      L   +    K
Sbjct: 70  LMDAKA-RADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVLELADAGDLSRMIKHFKK 128

Query: 178 GQPTMDWPTRIKIALGSAKGLAYLHD------DL--ANILLDFKFEAKVADFGLAKIASD 229
            +  +   T  K  +     L ++H       D+  AN+ +      K+ D GL +  S 
Sbjct: 129 QKRLIPERTVWKYFVQLCSALEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSS 188

Query: 230 VNTHVSTRVMGT 241
             T   + V GT
Sbjct: 189 KTTAAHSLV-GT 199

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 54.0 bits (130), Expect = 8e-09
 Identities = 35/227 (15%), Positives = 68/227 (29%), Gaps = 33/227 (14%)

Query: 40  HSPVYTPSPPLPPPPFMSNSGGSGSNYSGSEAPILPQSPGLSLGFSKSTFTYEELARATD 99
           H   +  S  +P    M  +  +       ++P L          S +     +      
Sbjct: 1   HHHHHHSSGLVPRGSGMKETAAAKFERQHMDSPDLGTDDDDKASSSANECISVKGRI--- 57

Query: 100 GFSDANLLRQDGFGYVHRGVLPNG--------------KEGEREFQAEVEIISRVHHK-- 143
            +S    +   G   V + +                   +    ++ E+  ++++     
Sbjct: 58  -YSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSD 116

Query: 144 HLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD 203
            ++ L  Y        +V E   N  L   L  K    +D   R        + +  +H 
Sbjct: 117 KIIRLYDYEITDQYIYMVMECG-NIDLNSWLKKKKS--IDPWERKSYWKNMLEAVHTIHQ 173

Query: 204 ------DL--ANILLDFKFEAKVADFGLAK-IASDVNTHVSTRVMGT 241
                 DL  AN L+      K+ DFG+A  +  D  + V    +G 
Sbjct: 174 HGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTTSVVKDSQVGA 219

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* Length = 311

 Score = 53.8 bits (130), Expect = 1e-08
 Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 16/126 (12%)

Query: 130 FQAEVEIISRVHHKHLVSL--VGYYTAGSQRM--LVYEFVLNNTLVFHLHGKGQPTMDWP 185
           F+ E +  + ++H  +V++   G     +  +  +V E+V   TL   +H +G   M   
Sbjct: 59  FRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGP--MTPK 116

Query: 186 TRIKIALGSAKGLAYLHD------DL--ANILLDFKFEAKVADFGLAKIASDVNTHV--S 235
             I++   + + L + H       D+  ANI++      KV DFG+A+  +D    V  +
Sbjct: 117 RAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQT 176

Query: 236 TRVMGT 241
             V+GT
Sbjct: 177 AAVIGT 182

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score = 53.5 bits (129), Expect = 1e-08
 Identities = 26/129 (20%), Positives = 48/129 (37%), Gaps = 32/129 (24%)

Query: 124 KEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRM-------------LVYEFVLNNTL 170
           +E      +EV +++ ++H+++V     +      +             +  E+  N TL
Sbjct: 43  EEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENGTL 102

Query: 171 VFHLHGKGQPT-----MDWPTRIKIALGSAKGLAYLHD------DL--ANILLDFKFEAK 217
              +H +              +I       + L+Y+H       DL   NI +D     K
Sbjct: 103 YDLIHSENLNQQRDEYWRLFRQI------LEALSYIHSQGIIHRDLKPMNIFIDESRNVK 156

Query: 218 VADFGLAKI 226
           + DFGLAK 
Sbjct: 157 IGDFGLAKN 165

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 53.5 bits (129), Expect = 1e-08
 Identities = 28/141 (19%), Positives = 50/141 (35%), Gaps = 27/141 (19%)

Query: 120 LPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTA------------GSQRMLVY---EF 164
           LPN +    +   EV+ ++++ H  +V    Y+ A             S ++ +Y   + 
Sbjct: 40  LPNRELAREKVMREVKALAKLEHPGIV---RYFNAWLEKNTTEKLQPSSPKVYLYIQMQL 96

Query: 165 VLNNTLVFHLHG-KGQPTMDWPTRIKIALGSAKGLAYLHD------DL--ANILLDFKFE 215
                L   ++G       +    + I L  A+ + +LH       DL  +NI       
Sbjct: 97  CRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDV 156

Query: 216 AKVADFGLAKIASDVNTHVST 236
            KV DFGL           + 
Sbjct: 157 VKVGDFGLVTAMDQDEEEQTV 177

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score = 52.8 bits (127), Expect = 2e-08
 Identities = 31/151 (20%), Positives = 54/151 (35%), Gaps = 21/151 (13%)

Query: 100 GFSDANLLR--QDGFGYVHRGVLPNGKEGEREFQAEVEIISRV-HHKHLVSLVGYYTAGS 156
           GF+     +    G  Y  + +L N +E  R    EV  + ++  H ++V      + G 
Sbjct: 40  GFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGK 99

Query: 157 QRM-------LVYEFVLNNTLVFHLHGKGQPTMDWPTRI-KIALGSAKGLAYLHD----- 203
           +         L+   +    LV  L             + KI   + + + ++H      
Sbjct: 100 EESDTGQAEFLLLTELCKGQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMHRQKPPI 159

Query: 204 ---DL--ANILLDFKFEAKVADFGLAKIASD 229
              DL   N+LL  +   K+ DFG A   S 
Sbjct: 160 IHRDLKVENLLLSNQGTIKLCDFGSATTISH 190

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score = 52.4 bits (126), Expect = 3e-08
 Identities = 30/148 (20%), Positives = 45/148 (30%), Gaps = 19/148 (12%)

Query: 112 FGYVHRGV-LPNGK-------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYE 163
           FG VHR      G          E     E+   + +    +V L G    G    +  E
Sbjct: 71  FGEVHRMKDKQTGFQCAVKKVRLEVFRVEELVACAGLSSPRIVPLYGAVREGPWVNIFME 130

Query: 164 FVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD------DL--ANILLDFK-F 214
            +   +L   +   G   +     +     + +GL YLH       D+   N+LL     
Sbjct: 131 LLEGGSLGQLIKQMG--CLPEDRALYYLGQALEGLEYLHTRRILHGDVKADNVLLSSDGS 188

Query: 215 EAKVADFGLAKIASDVNTHVSTRVMGTF 242
            A + DFG A          S       
Sbjct: 189 RAALCDFGHALCLQPDGLGKSLLTGDYI 216

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score = 51.6 bits (124), Expect = 5e-08
 Identities = 29/156 (18%), Positives = 53/156 (33%), Gaps = 29/156 (18%)

Query: 111 GFGYVHRGVLPNG--------------KEGEREFQAEVEIISRV--HHKHLVSLVGYYTA 154
           G   V + +                   +    ++ E+  ++++  H   ++ L  Y   
Sbjct: 21  GSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEIT 80

Query: 155 GSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD------DL--A 206
                +V E   N  L   L  K   ++D   R        + +  +H       DL  A
Sbjct: 81  DQYIYMVMECG-NIDLNSWLKKKK--SIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPA 137

Query: 207 NILLDFKFEAKVADFGLAK-IASDVNTHVSTRVMGT 241
           N L+      K+ DFG+A  +  D  + V    +GT
Sbjct: 138 NFLIV-DGMLKLIDFGIANQMQPDTTSVVKDSQVGT 172

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} Length = 309

 Score = 51.5 bits (124), Expect = 6e-08
 Identities = 26/121 (21%), Positives = 42/121 (34%), Gaps = 12/121 (9%)

Query: 130 FQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIK 189
            Q E     R+   H+V +  +     Q  +    +    L   L  +G   +  P  + 
Sbjct: 81  MQREARTAGRLQEPHVVPIHDFGEIDGQLYVDMRLINGVDLAAMLRRQG--PLAPPRAVA 138

Query: 190 IALGSAKGLAYLHD------DL--ANILLDFKFEAKVADFGLAKIASDVN-THVSTRVMG 240
           I       L   H       D+   NIL+     A + DFG+A   +D   T +    +G
Sbjct: 139 IVRQIGSALDAAHAAGATHRDVKPENILVSADDFAYLVDFGIASATTDEKLTQLGN-TVG 197

Query: 241 T 241
           T
Sbjct: 198 T 198

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 51.8 bits (124), Expect = 7e-08
 Identities = 46/239 (19%), Positives = 77/239 (32%), Gaps = 50/239 (20%)

Query: 19  AHVVTQPPRSSPPPLVASSPPHSPVYTPSPPLPPPPFMSNSGGSGSNYSGSEAPILPQSP 78
            H  ++P   + P L+                         G   SNY      I  Q  
Sbjct: 87  KHGQSKPCEPTAPVLIPGDERKRRRGYDVDEQGKIV--RGKGTVSSNYDNYVFDIWKQYY 144

Query: 79  GLSLGFSKSTFT--Y---EELARATDGFSDANLLRQDGFGYVHRGV------------LP 121
              +          Y   EEL                 FG VHR              + 
Sbjct: 145 PQPVEIKHDHVLDHYDIHEELGTGA-------------FGVVHRVTERATGNNFAAKFVM 191

Query: 122 NGKEGERE-FQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFH--LHGKG 178
              E ++E  + E++ +S + H  LV+L   +   ++ +++YEF+    L F        
Sbjct: 192 TPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEFMSGGEL-FEKVADEHN 250

Query: 179 QPT-MDWPTRIKIALGSAKGLAYLHD------DL--ANILLDFKFEA--KVADFGLAKI 226
           + +  +    ++      KGL ++H+      DL   NI+   K     K+ DFGL   
Sbjct: 251 KMSEDEAVEYMRQVC---KGLCHMHENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAH 306

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 50.8 bits (122), Expect = 8e-08
 Identities = 29/126 (23%), Positives = 39/126 (30%), Gaps = 14/126 (11%)

Query: 123 GKEGEREFQAEVEIISRV-HHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPT 181
           G +      AEV    +V  H   V L   +  G    L  E     +L  H    G   
Sbjct: 96  GPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQTELC-GPSLQQHCEAWGAS- 153

Query: 182 MDWPTRIKIALGSAKGLAYLHD------DL--ANILLDFKFEAKVADFGLAKI---ASDV 230
           +           +   LA+LH       D+  ANI L  +   K+ DFGL      A   
Sbjct: 154 LPEAQVWGYLRDTLLALAHLHSQGLVHLDVKPANIFLGPRGRCKLGDFGLLVELGTAGAG 213

Query: 231 NTHVST 236
                 
Sbjct: 214 EVQEGD 219

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B Length = 543

 Score = 51.3 bits (123), Expect = 9e-08
 Identities = 30/132 (22%), Positives = 53/132 (40%), Gaps = 19/132 (14%)

Query: 124 KEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMD 183
           ++G +    E +I+++VH + +VSL   +   +   LV   +    + +H++   +    
Sbjct: 226 RKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTDLCLVMTIMNGGDIRYHIYNVDEDNPG 285

Query: 184 WP-TRIK-----IALGSAKGLAYLHD------DL--ANILLDFKFEAKVADFGLAKIASD 229
           +   R       I  G    L +LH       DL   N+LLD     +++D GLA     
Sbjct: 286 FQEPRAIFYTAQIVSG----LEHLHQRNIIYRDLKPENVLLDDDGNVRISDLGLAVELKA 341

Query: 230 VNTHVSTRVMGT 241
             T       GT
Sbjct: 342 GQTKTKGYA-GT 352

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* Length = 576

 Score = 51.3 bits (123), Expect = 9e-08
 Identities = 36/126 (28%), Positives = 53/126 (42%), Gaps = 10/126 (7%)

Query: 124 KEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMD 183
           ++GE     E +I+ +V+ + +VSL   Y       LV   +    L FH++  GQ    
Sbjct: 225 RKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTLMNGGDLKFHIYHMGQAGFP 284

Query: 184 WPTRIKIALGSAKGLAYLHD------DL--ANILLDFKFEAKVADFGLAKIASDVNTHVS 235
               +  A     GL  LH       DL   NILLD     +++D GLA    +    + 
Sbjct: 285 EARAVFYAAEICCGLEDLHRERIVYRDLKPENILLDDHGHIRISDLGLAVHVPE-GQTIK 343

Query: 236 TRVMGT 241
            RV GT
Sbjct: 344 GRV-GT 348

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 28/156 (17%), Positives = 52/156 (33%), Gaps = 29/156 (18%)

Query: 111 GFGYVHRGVLPNG--------------KEGEREFQAEVEIISRVHHK--HLVSLVGYYTA 154
           G   V + +                   +    ++ E+  ++++      ++ L  Y   
Sbjct: 40  GSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEIT 99

Query: 155 GSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD------DL--A 206
                +V E   N  L   L  K   ++D   R        + +  +H       DL  A
Sbjct: 100 DQYIYMVMECG-NIDLNSWLKKKK--SIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPA 156

Query: 207 NILLDFKFEAKVADFGLAK-IASDVNTHVSTRVMGT 241
           N L+      K+ DFG+A  +  D  + V    +GT
Sbjct: 157 NFLIV-DGMLKLIDFGIANQMQPDTTSVVKDSQVGT 191

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ... Length = 299

 Score = 50.2 bits (121), Expect = 1e-07
 Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 9/101 (8%)

Query: 133 EVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIAL 192
           E+ ++  ++H ++V L+      ++  LV+EF L+  L   +       +  P       
Sbjct: 52  EISLLKELNHPNIVKLLDVIHTENKLYLVFEF-LHQDLKKFMDASALTGIPLPLIKSYLF 110

Query: 193 GSAKGLAYLHD------DL--ANILLDFKFEAKVADFGLAK 225
              +GLA+ H       DL   N+L++ +   K+ADFGLA+
Sbjct: 111 QLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLAR 151

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 32/136 (23%), Positives = 53/136 (38%), Gaps = 19/136 (13%)

Query: 124 KEGEREF-QAEVEIISRVHHKHLVSLVGYYTAGSQRML--VYEFVLNNTLVFHL--HGKG 178
            E E++   +EV ++  + H ++V         +   L  V E+     L   +    K 
Sbjct: 45  TEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKE 104

Query: 179 QPTMDWPTRIKIALGSAKGLAYLHD-----------DL--ANILLDFKFEAKVADFGLAK 225
           +  +D    +++       L   H            DL  AN+ LD K   K+ DFGLA+
Sbjct: 105 RQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLAR 164

Query: 226 IASDVNTHVSTRVMGT 241
           I +   +   T V GT
Sbjct: 165 ILNHDTSFAKTFV-GT 179

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} Length = 311

 Score = 49.9 bits (120), Expect = 2e-07
 Identities = 27/118 (22%), Positives = 55/118 (46%), Gaps = 16/118 (13%)

Query: 133 EVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIK-IA 191
           E+ ++ ++ H +LV+L+  +    +  LV+E+  ++T++  L    +  +     +K I 
Sbjct: 52  EIRMLKQLKHPNLVNLLEVFRRKRRLHLVFEY-CDHTVLHELDRYQRG-VP-EHLVKSIT 108

Query: 192 LGSAKGLAYLHD------DL--ANILLDFKFEAKVADFGLAK---IASDVNTH-VSTR 237
             + + + + H       D+   NIL+      K+ DFG A+     SD     V+TR
Sbjct: 109 WQTLQAVNFCHKHNCIHRDVKPENILITKHSVIKLCDFGFARLLTGPSDYYDDEVATR 166

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365

 Score = 50.1 bits (120), Expect = 2e-07
 Identities = 32/246 (13%), Positives = 69/246 (28%), Gaps = 58/246 (23%)

Query: 24  QPPRSSPPPLVASSPPHSPVYTPSPPLPPPPFMSNSGGSGSNYSGSEAPILPQSPGLSLG 83
           +         + +                P   +N        + ++          S+G
Sbjct: 19  RRRARREIRHLPNLNREQRRAFIRSLRDDPSQSANLLAEAKKLNDAQPKGTENLYFQSMG 78

Query: 84  FSKSTFTYEELARATDGFSDANLLRQDGFGYVHRGV---------------------LPN 122
                  +         +   +++ +     V R V                        
Sbjct: 79  PEDELPDWAAAKEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQ 138

Query: 123 GKEGEREFQAEVEIISRVH-HKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPT 181
            +E     + E  I+ +V  H H+++L+  Y + S   LV++ +    L F         
Sbjct: 139 LEEVREATRRETHILRQVAGHPHIITLIDSYESSSFMFLVFDLMRKGEL-FD-------- 189

Query: 182 MDWPTRIKIALGS-------------AKGLAYLHD------DL--ANILLDFKFEAKVAD 220
                 +     +              + +++LH       DL   NILLD   + +++D
Sbjct: 190 -----YL-TEKVALSEKETRSIMRSLLEAVSFLHANNIVHRDLKPENILLDDNMQIRLSD 243

Query: 221 FGLAKI 226
           FG +  
Sbjct: 244 FGFSCH 249

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303

 Score = 49.3 bits (118), Expect = 3e-07
 Identities = 35/161 (21%), Positives = 58/161 (36%), Gaps = 32/161 (19%)

Query: 112 FGYVHRGV-LPNGK-------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQ 157
              V      P  +                 E   E++ +S+ HH ++VS    +    +
Sbjct: 28  TAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDE 87

Query: 158 RMLVYEF-----VLNNTLVFHLHGKGQPTMDWPTRIKIAL---GSAKGLAYLHD------ 203
             LV +      VL+  ++ H+  KG+          IA       +GL YLH       
Sbjct: 88  LWLVMKLLSGGSVLD--IIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKNGQIHR 145

Query: 204 DL--ANILLDFKFEAKVADFGLAKIASDVNTHVSTRVMGTF 242
           D+   NILL      ++ADFG++   +        +V  TF
Sbjct: 146 DVKAGNILLGEDGSVQIADFGVSAFLATGGDITRNKVRKTF 186

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score = 49.2 bits (117), Expect = 3e-07
 Identities = 15/135 (11%), Positives = 37/135 (27%), Gaps = 14/135 (10%)

Query: 121 PNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHL------ 174
               +    F    +++     K ++ +             + +    + +         
Sbjct: 136 QKQAKVHLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLS 195

Query: 175 HGKGQPTMDWPTRIKIALGSAKGLAYLHD------DL--ANILLDFKFEAKVADFGLAKI 226
           H     ++    R+++ L   + LA LH        L   +I+LD +    +  F     
Sbjct: 196 HSSTHKSLVHHARLQLTLQVIRLLASLHHYGLVHTYLRPVDIVLDQRGGVFLTGFEHLVR 255

Query: 227 ASDVNTHVSTRVMGT 241
                    +R    
Sbjct: 256 DGARVVSSVSRGFEP 270

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score = 49.3 bits (117), Expect = 4e-07
 Identities = 15/135 (11%), Positives = 36/135 (26%), Gaps = 14/135 (10%)

Query: 121 PNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHL------ 174
               +    F    +++     K ++ +             + +    + +         
Sbjct: 141 QKQAKVHLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLS 200

Query: 175 HGKGQPTMDWPTRIKIALGSAKGLAYLHD------DL--ANILLDFKFEAKVADFGLAKI 226
           H     ++    R+++ L   + LA LH        L   +I+LD +    +  F     
Sbjct: 201 HSSTHKSLVHHARLQLTLQVIRLLASLHHYGLVHTYLRPVDIVLDQRGGVFLTGFEHLVR 260

Query: 227 ASDVNTHVSTRVMGT 241
                     R    
Sbjct: 261 DGASAVSPIGRGFAP 275

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 Length = 346

 Score = 49.1 bits (118), Expect = 4e-07
 Identities = 37/118 (31%), Positives = 57/118 (48%), Gaps = 16/118 (13%)

Query: 133 EVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIK-IA 191
           E++++  + H +++ L+  +   S   LV++F +   L   +       +  P+ IK   
Sbjct: 62  EIKLLQELSHPNIIGLLDAFGHKSNISLVFDF-METDLEVIIKDNSLV-LT-PSHIKAYM 118

Query: 192 LGSAKGLAYLHD------DL--ANILLDFKFEAKVADFGLAKIASDVN---TH-VSTR 237
           L + +GL YLH       DL   N+LLD     K+ADFGLAK     N   TH V TR
Sbjct: 119 LMTLQGLEYLHQHWILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNRAYTHQVVTR 176

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score = 49.1 bits (117), Expect = 4e-07
 Identities = 24/133 (18%), Positives = 52/133 (39%), Gaps = 18/133 (13%)

Query: 124 KEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRM--LVYEFVLNNTLVFHLHGKGQPT 181
           +  + + + E E++ +++HK++V L       + R   L+ EF    +L   L       
Sbjct: 49  RPVDVQMR-EFEVLKKLNHKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAY 107

Query: 182 -MDWPTRIKIALGSAKGLAYLHD------DL--ANILLDFKFEA----KVADFGLAKIAS 228
            +     + +      G+ +L +      ++   NI+     +     K+ DFG A+   
Sbjct: 108 GLPESEFLIVLRDVVGGMNHLRENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELE 167

Query: 229 DVNTHVSTRVMGT 241
           D +    +   GT
Sbjct: 168 D-DEQFVSLY-GT 178

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score = 49.0 bits (117), Expect = 4e-07
 Identities = 24/133 (18%), Positives = 52/133 (39%), Gaps = 18/133 (13%)

Query: 124 KEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRM--LVYEFVLNNTLVFHLHGKGQPT 181
           +  + + + E E++ +++HK++V L       + R   L+ EF    +L   L       
Sbjct: 49  RPVDVQMR-EFEVLKKLNHKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAY 107

Query: 182 -MDWPTRIKIALGSAKGLAYLHD------DL--ANILLDFKFEA----KVADFGLAKIAS 228
            +     + +      G+ +L +      ++   NI+     +     K+ DFG A+   
Sbjct: 108 GLPESEFLIVLRDVVGGMNHLRENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELE 167

Query: 229 DVNTHVSTRVMGT 241
           D +    +   GT
Sbjct: 168 D-DEQFVSLY-GT 178

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A Length = 292

 Score = 48.7 bits (117), Expect = 5e-07
 Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 12/102 (11%)

Query: 133 EVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIK-IA 191
           E+ ++  + HK++V L     +  +  LV+EF  +  L  +        +D P  +K   
Sbjct: 51  EICLLKELKHKNIVRLHDVLHSDKKLTLVFEF-CDQDLKKYFDSCNGD-LD-PEIVKSFL 107

Query: 192 LGSAKGLAYLHD------DL--ANILLDFKFEAKVADFGLAK 225
               KGL + H       DL   N+L++   E K+A+FGLA+
Sbjct: 108 FQLLKGLGFCHSRNVLHRDLKPQNLLINRNGELKLANFGLAR 149

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348

 Score = 48.2 bits (115), Expect = 7e-07
 Identities = 34/126 (26%), Positives = 49/126 (38%), Gaps = 16/126 (12%)

Query: 122 NGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPT 181
              E  ++   EV  + ++ H + +   G Y       LV E+ L +        K    
Sbjct: 93  QSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEYCLGSASDLLEVHKKPLQ 152

Query: 182 MDWPTRIKIAL---GSAKGLAYLHD------DL--ANILLDFKFEAKVADFGLAKIASDV 230
                   IA    G+ +GLAYLH       D+   NILL      K+ DFG A I +  
Sbjct: 153 EVE-----IAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPA 207

Query: 231 NTHVST 236
           N+ V T
Sbjct: 208 NSFVGT 213

>1uu3_A HPDK1, 3-phosphoinositide dependent protein kinase-1; PKB, inhibitor, LY333531, diabetes, cancer, transferase, serine/threonine-protein kinase; HET: SEP LY4; 1.7A {Homo sapiens} SCOP: d.144.1.7 PDB: 1okz_A* 1oky_A* 1uu7_A* 1uu8_A* 2biy_A* 3rwp_A* 2xch_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* ... Length = 310

 Score = 48.0 bits (115), Expect = 8e-07
 Identities = 35/122 (28%), Positives = 50/122 (40%), Gaps = 17/122 (13%)

Query: 132 AEVEIISRVHHKHLVSLVGYYTAGSQRML--VYEFVLNNTLVFHLHGKGQPTMDWPTRIK 189
            E +++SR+ H   V L  Y+T      L     +  N  L+ ++   G       TR  
Sbjct: 79  RERDVMSRLDHPFFVKL--YFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDET-CTRFY 135

Query: 190 IA-LGSAKGLAYLHD------DLA--NILLDFKFEAKVADFGLAKIASDVNTHVSTRVM- 239
            A + SA  L YLH       DL   NILL+     ++ DFG AK+ S  +         
Sbjct: 136 TAEIVSA--LEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFV 193

Query: 240 GT 241
           GT
Sbjct: 194 GT 195

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} PDB: 2qkr_A* Length = 311

 Score = 47.9 bits (115), Expect = 9e-07
 Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 12/102 (11%)

Query: 133 EVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIK-IA 191
           E+ ++  +HH ++VSL+    +     LV+EF +   L   L       +   ++IK   
Sbjct: 69  EISLLKELHHPNIVSLIDVIHSERCLTLVFEF-MEKDLKKVLDENKTG-LQ-DSQIKIYL 125

Query: 192 LGSAKGLAYLHD------DL--ANILLDFKFEAKVADFGLAK 225
               +G+A+ H       DL   N+L++     K+ADFGLA+
Sbjct: 126 YQLLRGVAHCHQHRILHRDLKPQNLLINSDGALKLADFGLAR 167

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360

 Score = 47.9 bits (114), Expect = 1e-06
 Identities = 27/118 (22%), Positives = 55/118 (46%), Gaps = 17/118 (14%)

Query: 133 EVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRI--KI 190
           E++++   +  ++V   G + +  +  +  E  ++   +  +  K       P +I  K+
Sbjct: 81  ELQVLHECNSPYIVGFYGAFYSDGEISICMEH-MDGGSLDQVLKKAGR---IPEQILGKV 136

Query: 191 ALGSAKGLAYLHDDL---------ANILLDFKFEAKVADFGLAK--IASDVNTHVSTR 237
           ++   KGL YL +           +NIL++ + E K+ DFG++   I S  N+ V TR
Sbjct: 137 SIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTR 194

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 26/128 (20%), Positives = 49/128 (38%), Gaps = 12/128 (9%)

Query: 122 NGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPT 181
             +  +     E+ ++    + ++V+ +  Y  G +  +V E++   +L   +       
Sbjct: 56  QQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTET---C 112

Query: 182 MDWPTRIKIALGSAKGLAYLHD------DL--ANILLDFKFEAKVADFGLAKIASDVNTH 233
           MD      +     + L +LH       D+   NILL      K+ DFG     +   + 
Sbjct: 113 MDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSK 172

Query: 234 VSTRVMGT 241
            ST V GT
Sbjct: 173 RSTMV-GT 179

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A Length = 304

 Score = 47.2 bits (113), Expect = 1e-06
 Identities = 29/144 (20%), Positives = 52/144 (36%), Gaps = 42/144 (29%)

Query: 124 KEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMD 183
              +   + E+ ++ ++ H+++V+L   Y + +   LV + V    L F           
Sbjct: 47  AFRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLVMQLVSGGEL-FD---------- 95

Query: 184 WPTRIKIALGS-------------AKGLAYLHD------DLA--NILLDFKFEA---KVA 219
              RI +  G                 + YLH+      DL   N+L     E     + 
Sbjct: 96  ---RI-LERGVYTEKDASLVIQQVLSAVKYLHENGIVHRDLKPENLLYLTPEENSKIMIT 151

Query: 220 DFGLAKIASDVNTHVSTRVMGTFG 243
           DFGL+K+       + +   GT G
Sbjct: 152 DFGLSKM---EQNGIMSTACGTPG 172

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 38/151 (25%), Positives = 58/151 (38%), Gaps = 29/151 (19%)

Query: 112 FGYVHRGV--------------LPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQ 157
           FG V +G+              L   ++   + Q E+ ++S+    ++    G Y   ++
Sbjct: 35  FGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTK 94

Query: 158 RMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD------DL--ANIL 209
             ++ E+ L       L   G   +D      I     KGL YLH       D+  AN+L
Sbjct: 95  LWIIMEY-LGGGSALDLLEPG--PLDETQIATILREILKGLDYLHSEKKIHRDIKAANVL 151

Query: 210 LDFKFEAKVADFG----LAKIASDVNTHVST 236
           L    E K+ADFG    L       NT V T
Sbjct: 152 LSEHGEVKLADFGVAGQLTDTQIKRNTFVGT 182

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 40/162 (24%), Positives = 67/162 (41%), Gaps = 25/162 (15%)

Query: 101 FSDANLLRQDGFGYVHRGV-LPNGK----------EGEREFQAEVEIISRVHHKHLVSLV 149
           F     L +  +G V++ +    G+             +E   E+ I+ +    H+V   
Sbjct: 31  FDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVESDLQEIIKEISIMQQCDSPHVVKYY 90

Query: 150 GYYTAGSQRMLVYEFVLNNTL--VFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD---- 203
           G Y   +   +V E+    ++  +  L  K   T+       I   + KGL YLH     
Sbjct: 91  GSYFKNTDLWIVMEYCGAGSVSDIIRLRNK---TLTEDEIATILQSTLKGLEYLHFMRKI 147

Query: 204 --DL--ANILLDFKFEAKVADFGLAKIASDVNTHVSTRVMGT 241
             D+   NILL+ +  AK+ADFG+A   +D     +T + GT
Sbjct: 148 HRDIKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVI-GT 188

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} Length = 331

 Score = 47.2 bits (113), Expect = 1e-06
 Identities = 27/118 (22%), Positives = 55/118 (46%), Gaps = 16/118 (13%)

Query: 133 EVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIK-IA 191
           E++++ ++ H++LV+L+       +  LV+EF +++T++  L       +D    ++   
Sbjct: 74  EIKLLKQLRHENLVNLLEVCKKKKRWYLVFEF-VDHTILDDLELFPNG-LD-YQVVQKYL 130

Query: 192 LGSAKGLAYLHD------DL--ANILLDFKFEAKVADFGLAK---IASDVNTH-VSTR 237
                G+ + H       D+   NIL+      K+ DFG A+      +V    V+TR
Sbjct: 131 FQIINGIGFCHSHNIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGEVYDDEVATR 188

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 26/125 (20%), Positives = 52/125 (41%), Gaps = 23/125 (18%)

Query: 129 EFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEF-----VLNNTLVFHLHGKGQPTMD 183
           ++  E+EI++   H ++V L+G Y    +  ++ EF     V    ++  L       + 
Sbjct: 62  DYIVEIEILATCDHPYIVKLLGAYYHDGKLWIMIEFCPGGAVDA--IMLELDR----GLT 115

Query: 184 WPTRIKIALGSAKGLAYLHD------DL--ANILLDFKFEAKVADFG----LAKIASDVN 231
            P    +     + L +LH       DL   N+L+  + + ++ADFG      K     +
Sbjct: 116 EPQIQVVCRQMLEALNFLHSKRIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKTLQKRD 175

Query: 232 THVST 236
           + + T
Sbjct: 176 SFIGT 180

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389

 Score = 47.2 bits (112), Expect = 2e-06
 Identities = 25/160 (15%), Positives = 51/160 (31%), Gaps = 33/160 (20%)

Query: 110 DGFGYVHRGV-LPNG--------------KEGEREFQAEVEIISRVHHKHLVSLVGYYTA 154
           +    V+     P G               E     Q E+ +    +H ++V     + A
Sbjct: 38  EDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIA 97

Query: 155 GSQRMLVYEFV----LNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD------D 204
            ++  +V  F+      + +  H        M+      I  G  K L Y+H        
Sbjct: 98  DNELWVVTSFMAYGSAKDLICTHFMD----GMNELAIAYILQGVLKALDYIHHMGYVHRS 153

Query: 205 L--ANILLDFKFEAKVADFGLAKIASDVNTHVSTRVMGTF 242
           +  ++IL+    +  ++        S ++     RV+  F
Sbjct: 154 VKASHILISVDGKVYLSGLRSN--LSMISHGQRQRVVHDF 191

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* Length = 317

 Score = 47.2 bits (113), Expect = 2e-06
 Identities = 25/103 (24%), Positives = 48/103 (46%), Gaps = 11/103 (10%)

Query: 133 EVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNN--TLVFHLHGKGQPTMDWPTRIKI 190
           E+ ++  + H+++V L       ++  LV+EF+ N+    +        P       +K 
Sbjct: 53  EISLMKELKHENIVRLYDVIHTENKLTLVFEFMDNDLKKYMDSRTVGNTPRGLELNLVKY 112

Query: 191 ALGSA-KGLAYLHD------DL--ANILLDFKFEAKVADFGLA 224
                 +GLA+ H+      DL   N+L++ + + K+ DFGLA
Sbjct: 113 FQWQLLQGLAFCHENKILHRDLKPQNLLINKRGQLKLGDFGLA 155

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 29/125 (23%), Positives = 49/125 (39%), Gaps = 20/125 (16%)

Query: 133 EVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTR----- 187
           E  I   + H H+V L+  Y++     +V+EF+    L F +  +      +        
Sbjct: 76  EASICHMLKHPHIVELLETYSSDGMLYMVFEFMDGADLCFEIVKRADAGFVYSEAVASHY 135

Query: 188 IKIALGSAKGLAYLHD------DL--ANILLDFKFEA---KVADFGLAKIASDVNTHVST 236
           ++  L   + L Y HD      D+    +LL  K  +   K+  FG+A    +       
Sbjct: 136 MRQIL---EALRYCHDNNIIHRDVKPHCVLLASKENSAPVKLGGFGVAIQLGESGLVAGG 192

Query: 237 RVMGT 241
           RV GT
Sbjct: 193 RV-GT 196

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} Length = 349

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 41/227 (18%), Positives = 71/227 (31%), Gaps = 52/227 (22%)

Query: 52  PPPFMSNSGGSGSNYSGSEAPILPQSPGLSLGFSKSTFTYEELARATDGFSDANLLRQDG 111
                 + G     +    +     +PG +                +D F   + L +  
Sbjct: 6   HHSSGVDLGTENLYFQSMSSVTASAAPGTASLVPDYWIDGSNRDALSDFFEVESELGRGA 65

Query: 112 FGYVHRGV-LPNG----------KEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRML 160
              V+R                    ++  + E+ ++ R+ H +++ L   +   ++  L
Sbjct: 66  TSIVYRCKQKGTQKPYALKVLKKTVDKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISL 125

Query: 161 VYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGS-------------AKGLAYLHD---- 203
           V E V    L F              RI +  G               + +AYLH+    
Sbjct: 126 VLELVTGGEL-FD-------------RI-VEKGYYSERDAADAVKQILEAVAYLHENGIV 170

Query: 204 --DLA--NILLDFKFEA---KVADFGLAKIASDVNTHVSTRVMGTFG 243
             DL   N+L          K+ADFGL+KI       + T   GT G
Sbjct: 171 HRDLKPENLLYATPAPDAPLKIADFGLSKIVEH-QVLMKTVC-GTPG 215

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A Length = 288

 Score = 46.4 bits (111), Expect = 2e-06
 Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 12/102 (11%)

Query: 133 EVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIK-IA 191
           E+ I+  + H ++V L        + +LV+E  L+  L   L       ++     K   
Sbjct: 50  EISILKELKHSNIVKLYDVIHTKKRLVLVFEH-LDQDLKKLLDVCEGG-LE-SVTAKSFL 106

Query: 192 LGSAKGLAYLHD------DL--ANILLDFKFEAKVADFGLAK 225
           L    G+AY HD      DL   N+L++ + E K+ADFGLA+
Sbjct: 107 LQLLNGIAYCHDRRVLHRDLKPQNLLINREGELKIADFGLAR 148

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 38/245 (15%), Positives = 71/245 (28%), Gaps = 38/245 (15%)

Query: 9   HWQQNVPPPAAHVVTQPPRSSPPPLVASSPPHSPVYTPSPPLPPPPFMSNSGGSGSNYSG 68
           H   +                      S   H+              M       S  + 
Sbjct: 5   HHHHSSGVDLGTENLYFQSMKNSGDQDSRSGHNEAKEVWSNADLTERMPVKSKRTSALAV 64

Query: 69  SEAPILPQSPGLSLGFSKSTFT--YEELARATDGFSDANLLRQDGFGYVHRGV------- 119
                        +   +      Y          S   +L    FG VH+         
Sbjct: 65  DIPAPPAPFDHRIVTAKQGAVNSFYT--------VSKTEILGGGRFGQVHKCEETATGLK 116

Query: 120 ------LPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFH 173
                    G + + E + E+ +++++ H +L+ L   + + +  +LV E+V    L   
Sbjct: 117 LAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDGGELFDR 176

Query: 174 LHGKGQPTMDWPTR--IKIALGSAKGLAYLHD------DL--ANILLDFKFEA--KVADF 221
           +  +     +  T   +K       G+ ++H       DL   NIL   +     K+ DF
Sbjct: 177 IIDESYNLTELDTILFMKQICE---GIRHMHQMYILHLDLKPENILCVNRDAKQIKIIDF 233

Query: 222 GLAKI 226
           GLA+ 
Sbjct: 234 GLARR 238

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score = 46.6 bits (110), Expect = 3e-06
 Identities = 33/140 (23%), Positives = 55/140 (39%), Gaps = 25/140 (17%)

Query: 122 NGKEGEREFQAEVEIISRVHHKHLVSLV------GYYTAGSQRMLVYEFVLNNTLVFHLH 175
           + K  ER    E++I+ +++H ++VS                 +L  E+     L  +L+
Sbjct: 52  SPKNRERWCL-EIQIMKKLNHPNVVSAREVPDGLQKLAPNDLPLLAMEYCEGGDLRKYLN 110

Query: 176 GKGQPTM--DWPTRIKIA-LGSAKGLAYLHD------DL--ANILLDFKFEA---KVADF 221
                    + P R  ++ + SA  L YLH+      DL   NI+L    +    K+ D 
Sbjct: 111 QFENCCGLKEGPIRTLLSDISSA--LRYLHENRIIHRDLKPENIVLQPGPQRLIHKIIDL 168

Query: 222 GLAKIASDVNTHVSTRVMGT 241
           G AK         +  V GT
Sbjct: 169 GYAKELDQ-GELCTEFV-GT 186

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} Length = 324

 Score = 46.1 bits (110), Expect = 3e-06
 Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 12/102 (11%)

Query: 133 EVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIAL 192
           EV ++  + H ++V+L           LV+E+ L+  L  +L   G   ++    +K+ L
Sbjct: 50  EVSLLKDLKHANIVTLHDIIHTEKSLTLVFEY-LDKDLKQYLDDCGNI-IN-MHNVKLFL 106

Query: 193 GS-AKGLAYLHD------DL--ANILLDFKFEAKVADFGLAK 225
               +GLAY H       DL   N+L++ + E K+ADFGLA+
Sbjct: 107 FQLLRGLAYCHRQKVLHRDLKPQNLLINERGELKLADFGLAR 148

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens} Length = 384

 Score = 46.2 bits (110), Expect = 3e-06
 Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 16/115 (13%)

Query: 132 AEVEIISRVHHKHLVSLVGYYT-AGSQRM-LVYEFVLNNTLVFHLHGKGQPTMDWPTRIK 189
            E++I+  + H  LV+L  +Y+    + M +V + +L   L +HL        +   ++ 
Sbjct: 64  KELQIMQGLEHPFLVNL--WYSFQDEEDMFMVVDLLLGGDLRYHLQQNVHFKEET-VKLF 120

Query: 190 IA-LGSAKGLAYLHD------DL--ANILLDFKFEAKVADFGLAKIASDVNTHVS 235
           I  L  A  L YL +      D+   NILLD      + DF +A +        +
Sbjct: 121 ICELVMA--LDYLQNQRIIHRDMKPDNILLDEHGHVHITDFNIAAMLPRETQITT 173

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score = 46.1 bits (109), Expect = 3e-06
 Identities = 21/144 (14%), Positives = 39/144 (27%), Gaps = 26/144 (18%)

Query: 121 PNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQP 180
            N  E     Q  +E +        +     +   +  +LV E     TL+  ++     
Sbjct: 106 ANPWEFYIGTQ-LMERLKPSMQHMFMKFYSAHLFQNGSVLVGELYSYGTLLNAINLYKNT 164

Query: 181 T---MDWPTRIKIALGSAKGLAYLHD------DL--ANILLDFKFEA-----------KV 218
               M     I  A+     +  +HD      D+   N +L   F              +
Sbjct: 165 PEKVMPQGLVISFAMRMLYMIEQVHDCEIIHGDIKPDNFILGNGFLEQDDEDDLSAGLAL 224

Query: 219 ADFGLAKIASDVNTHVSTRVMGTF 242
            D G +    D+       +    
Sbjct: 225 IDLGQSI---DMKLFPKGTIFTAK 245

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A* 3hng_A* Length = 359

 Score = 46.1 bits (109), Expect = 4e-06
 Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 8/106 (7%)

Query: 128 REFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTR 187
           R+ +  V  I     + L S+    ++ S   +  + + +           +  +     
Sbjct: 136 RQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEKSLSDVEEEEAPEDLYKDFLTLEHL 195

Query: 188 IKIALGSAKGLAYL------HDDLA--NILLDFKFEAKVADFGLAK 225
           I  +   AKG+ +L      H DLA  NILL  K   K+ DFGLA+
Sbjct: 196 ICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLAR 241

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 46.0 bits (109), Expect = 5e-06
 Identities = 27/125 (21%), Positives = 44/125 (35%), Gaps = 23/125 (18%)

Query: 130 FQAEVEIISRVHHKHLVSL--VGYYTAGSQRMLVY---EFVLNNTLVFHLHGKGQPTMDW 184
             AE + ++ V H  +V +     +T      + Y   E+V   +L      K    +  
Sbjct: 126 AMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPVGYIVMEYVGGQSLKRSKGQK----LPV 181

Query: 185 PTRIKIALGSAKGLAYLHD------DL--ANILLDFKFEAKVADFGLAKIASDVNTHVST 236
              I   L     L+YLH       DL   NI+L  + + K+ D G     +        
Sbjct: 182 AEAIAYLLEILPALSYLHSIGLVYNDLKPENIMLT-EEQLKLIDLGAVSRINSFGY---- 236

Query: 237 RVMGT 241
            + GT
Sbjct: 237 -LYGT 240

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} Length = 298

 Score = 45.3 bits (108), Expect = 5e-06
 Identities = 28/122 (22%), Positives = 51/122 (41%), Gaps = 29/122 (23%)

Query: 133 EVEIISRVHHKHLVSLVGYYTAGSQRML--VYEFVLNNTLVFHLHGKGQPTMDWPTRIKI 190
           E+ I+ ++ H ++V LV      ++  L  V+E V              P M+ PT   +
Sbjct: 86  EIAILKKLDHPNVVKLVEVLDDPNEDHLYMVFELV-----------NQGPVMEVPTLKPL 134

Query: 191 ALGSAK--------GLAYLHD------DL--ANILLDFKFEAKVADFGLAKIASDVNTHV 234
           +   A+        G+ YLH       D+  +N+L+      K+ADFG++      +  +
Sbjct: 135 SEDQARFYFQDLIKGIEYLHYQKIIHRDIKPSNLLVGEDGHIKIADFGVSNEFKGSDALL 194

Query: 235 ST 236
           S 
Sbjct: 195 SN 196

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} Length = 394

 Score = 45.8 bits (109), Expect = 5e-06
 Identities = 35/126 (27%), Positives = 58/126 (46%), Gaps = 23/126 (18%)

Query: 133 EVEIISRVHHKHLVSLVGYYTAGSQRM------LVYEFVLNNTL--VFHLHGKGQPTMDW 184
           E++I+  V H ++V L  ++ +   +       LV E+V   T+      + K + TM  
Sbjct: 82  ELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLNLVLEYV-PETVYRASRHYAKLKQTMP- 139

Query: 185 PTRIKIAL-GSAKGLAYLHD------DL--ANILLD-FKFEAKVADFGLAK--IASDVNT 232
              IK+ +    + LAY+H       D+   N+LLD      K+ DFG AK  IA + N 
Sbjct: 140 MLLIKLYMYQLLRSLAYIHSIGICHRDIKPQNLLLDPPSGVLKLIDFGSAKILIAGEPNV 199

Query: 233 H-VSTR 237
             + +R
Sbjct: 200 SYICSR 205

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score = 45.8 bits (109), Expect = 6e-06
 Identities = 37/195 (18%), Positives = 69/195 (35%), Gaps = 33/195 (16%)

Query: 75  PQSPGLSLGFSKSTFTYEELARATDGFSDANLLRQDGFGYVHRGV--------------- 119
           P S    L  +   F     A  +D +    +L +  FG V                   
Sbjct: 2   PGSMMDHLHATPGMFVQHSTAIFSDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISK 61

Query: 120 -LPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKG 178
                K  +     EV+++ ++ H +++ L  ++       LV E      L   +  + 
Sbjct: 62  RQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLVGEVYTGGELFDEIISRK 121

Query: 179 QPT-MDWPTRIKIALGSAKGLAYLHD------DL--ANILLDFKFEA---KVADFGLAKI 226
           + + +D    I+  L    G+ Y+H       DL   N+LL+ K +    ++ DFGL+  
Sbjct: 122 RFSEVDAARIIRQVLS---GITYMHKNKIVHRDLKPENLLLESKSKDANIRIIDFGLSTH 178

Query: 227 ASDVNTHVSTRVMGT 241
                +      +GT
Sbjct: 179 FEA--SKKMKDKIGT 191

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score = 45.4 bits (108), Expect = 6e-06
 Identities = 28/135 (20%), Positives = 51/135 (37%), Gaps = 31/135 (22%)

Query: 122 NGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEF--------VLNNTLVFH 173
             ++       EV I+    H ++V +   Y  G +  ++ EF        +++      
Sbjct: 81  RKQQRRELLFNEVVIMRDYQHFNVVEMYKSYLVGEELWVLMEFLQGGALTDIVSQV---- 136

Query: 174 LHGKGQPTMDWPTRIKIALGSAKGLAYLHD------DL--ANILLDFKFEAKVADFGL-A 224
                   ++      +     + LAYLH       D+   +ILL      K++DFG  A
Sbjct: 137 -------RLNEEQIATVCEAVLQALAYLHAQGVIHRDIKSDSILLTLDGRVKLSDFGFCA 189

Query: 225 KIASDV---NTHVST 236
           +I+ DV    + V T
Sbjct: 190 QISKDVPKRKSLVGT 204

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A Length = 290

 Score = 44.9 bits (107), Expect = 8e-06
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 11/62 (17%)

Query: 189 KIALGSAKGLAYLHDDL---------ANILLDFKFEAKVADFGLAKIASDVNTHVSTRVM 239
           KIA+   K L +LH  L         +N+L++   + K+ DFG++     V+        
Sbjct: 113 KIAVSIVKALEHLHSKLSVIHRDVKPSNVLINALGQVKMCDFGISGYL--VDDVAKDIDA 170

Query: 240 GT 241
           G 
Sbjct: 171 GC 172

>3pvu_A Beta-adrenergic receptor kinase 1; transferase, serine/threonine-protein kinase, ATP-binding, I membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A* 3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A* 1bak_A Length = 695

 Score = 45.6 bits (108), Expect = 8e-06
 Identities = 28/120 (23%), Positives = 47/120 (39%), Gaps = 23/120 (19%)

Query: 135 EIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIK----- 189
            ++S      +V +   +    +   + + +    L +HL   G  +      ++     
Sbjct: 244 SLVSTGDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQHGVFSEA---DMRFYAAE 300

Query: 190 IALGSAKGLAYLHD------DL--ANILLDFKFEAKVADFGLAKIASDVNTHVSTRVMGT 241
           I LG    L ++H+      DL  ANILLD     +++D GLA   S    H    V GT
Sbjct: 301 IILG----LEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPH--ASV-GT 353

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score = 44.9 bits (107), Expect = 9e-06
 Identities = 25/125 (20%), Positives = 42/125 (33%), Gaps = 37/125 (29%)

Query: 124 KEGEREFQAEVEIISRV-HHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTM 182
           +E       EV+I+ +V  H +++ L   Y   +   LV++ +    L F          
Sbjct: 64  QELREATLKEVDILRKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGEL-FD--------- 113

Query: 183 DWPTRIKIALGS-------------AKGLAYLHD------DL--ANILLDFKFEAKVADF 221
                +     +              + +  LH       DL   NILLD     K+ DF
Sbjct: 114 ----YL-TEKVTLSEKETRKIMRALLEVICALHKLNIVHRDLKPENILLDDDMNIKLTDF 168

Query: 222 GLAKI 226
           G +  
Sbjct: 169 GFSCQ 173

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 Length = 321

 Score = 44.9 bits (107), Expect = 1e-05
 Identities = 25/151 (16%), Positives = 53/151 (35%), Gaps = 51/151 (33%)

Query: 112 FGYVHRGV------------LPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRM 159
           FG VHR V            +      +   + E+ I++   H++++ L   + +  + +
Sbjct: 18  FGIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEISILNIARHRNILHLHESFESMEELV 77

Query: 160 LVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSA--------------KGLAYLHD-- 203
           +++EF+    + F              RI                     + L +LH   
Sbjct: 78  MIFEFISGLDI-FE-------------RI-NTSAFELNEREIVSYVHQVCEALQFLHSHN 122

Query: 204 ----DL--ANILLDFKFEA--KVADFGLAKI 226
               D+   NI+   +  +  K+ +FG A+ 
Sbjct: 123 IGHFDIRPENIIYQTRRSSTIKIIEFGQARQ 153

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 44.9 bits (106), Expect = 1e-05
 Identities = 19/125 (15%), Positives = 36/125 (28%), Gaps = 15/125 (12%)

Query: 124 KEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVY---EFVLNNTL-VFHLHGKGQ 179
                    ++  +     K+ V         S ++ +Y   +      L  +       
Sbjct: 102 PSPMDAPSVKIRRMDPFSTKNTVG---QLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSL 158

Query: 180 PTMDWPTRIKIALGSAKGLAYLHD------DL--ANILLDFKFEAKVADFGLAKIASDVN 231
              +    + I +  A+ + +LH       DL  +NI        KV DFGL        
Sbjct: 159 EDREHGVCLHIFIQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDE 218

Query: 232 THVST 236
              + 
Sbjct: 219 EEQTV 223

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ... Length = 350

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 29/107 (27%), Positives = 42/107 (39%), Gaps = 12/107 (11%)

Query: 132 AEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIA 191
            E  I+  V+   LV L   +   S   +V E+V    +  HL   G+ +     R   A
Sbjct: 90  NEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEPH-ARFYAA 148

Query: 192 -LGSAKGLAYLHD------DLA--NILLDFKFEAKVADFGLAKIASD 229
            +       YLH       DL   N+L+D +   +V DFG AK    
Sbjct: 149 QIVLT--FEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG 193

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C Length = 400

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 44/242 (18%), Positives = 73/242 (30%), Gaps = 65/242 (26%)

Query: 21  VVTQPPRSSPPPLVASSPPHSPVYTPSPPLPPPPFMSNSGGSGSNYSGSEAPILPQSPGL 80
           +++     SPP      P  +P     PP PP P + +           + P      GL
Sbjct: 1   MLSNSQGQSPP-----VPFPAP---APPPQPPTPALPHPPAQPPPPPPQQFPQFHVKSGL 52

Query: 81  SLGFSKSTFTYEELARATDGFSDANLLRQDGFGYVHRGV-LPNGKE-------GEREFQA 132
            +  +     Y+  ++         +L     G V +       ++          + + 
Sbjct: 53  QIKKNAIIDDYKVTSQ---------VLGLGINGKVLQIFNKRTQEKFALKMLQDCPKARR 103

Query: 133 EVEIISRV-HHKHLVSLVGYY-TAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKI 190
           EVE+  R     H+V +V  Y    + R  +        +V      G        RI  
Sbjct: 104 EVELHWRASQCPHIVRIVDVYENLYAGRKCLL-------IVMECL-DGGELFS---RI-Q 151

Query: 191 ALGS---------------AKGLAYLHD------DL--ANILLDFKFEA---KVADFGLA 224
             G                 + + YLH       D+   N+L   K      K+ DFG A
Sbjct: 152 DRGDQAFTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFA 211

Query: 225 KI 226
           K 
Sbjct: 212 KE 213

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 308

 Score = 44.5 bits (106), Expect = 1e-05
 Identities = 34/127 (26%), Positives = 52/127 (40%), Gaps = 23/127 (18%)

Query: 120 LPNGKEGEREFQA----EVEI---ISRVHHKHLVSL----VGYYTAGSQRM-LVYEFVLN 167
           +PNG  G          EV +   +    H ++V L        T    ++ LV+E  ++
Sbjct: 44  VPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATSRTDREIKVTLVFEH-VD 102

Query: 168 NTLVFHLHGKGQPTMDWPTRIK-IALGSAKGLAYLHD------DL--ANILLDFKFEAKV 218
             L  +L     P +     IK +     +GL +LH       DL   NIL+      K+
Sbjct: 103 QDLRTYLDKAPPPGLP-AETIKDLMRQFLRGLDFLHANCIVHRDLKPENILVTSGGTVKL 161

Query: 219 ADFGLAK 225
           ADFGLA+
Sbjct: 162 ADFGLAR 168

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 31/155 (20%), Positives = 62/155 (40%), Gaps = 30/155 (19%)

Query: 112 FGYVHRGV------------LPNGKEGERE-FQAEVEIISRVHHKHLVSLVGYYTAGSQR 158
           FG VHR V            +      ++   + E+ I++++HH  L++L   +    + 
Sbjct: 64  FGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEM 123

Query: 159 MLVYEFVLNNTLVFHLHGKGQPT--MDWPTRIKIALGSAKGLAYLHD------DL--ANI 208
           +L+ EF+    L   +  +       +    ++ A     GL ++H+      D+   NI
Sbjct: 124 VLILEFLSGGELFDRIAAEDYKMSEAEVINYMRQACE---GLKHMHEHSIVHLDIKPENI 180

Query: 209 LLDFKFEA--KVADFGLAKIASDVNTHVSTRVMGT 241
           + + K  +  K+ DFGLA   +     +      T
Sbjct: 181 MCETKKASSVKIIDFGLATKLNP--DEIVKVTTAT 213

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A Length = 321

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 33/111 (29%), Positives = 49/111 (44%), Gaps = 16/111 (14%)

Query: 129 EFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPT-MDWPTR 187
           E + EV I+ +V H ++++L   Y   +  +L+ E V    L   L  K   +  +  + 
Sbjct: 61  EIEREVSILRQVLHHNVITLHDVYENRTDVVLILELVSGGELFDFLAQKESLSEEEATSF 120

Query: 188 IKIALGSAKGLAYLHD------DL--ANILLDFKFEA----KVADFGLAKI 226
           IK  L    G+ YLH       DL   NI+L  K       K+ DFGLA  
Sbjct: 121 IKQILD---GVNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHE 168

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 11/62 (17%)

Query: 189 KIALGSAKGLAYLHDDL---------ANILLDFKFEAKVADFGLAKIASDVNTHVSTRVM 239
           KI L + K L +L ++L         +NILLD     K+ DFG++     V++   TR  
Sbjct: 129 KITLATVKALNHLKENLKIIHRDIKPSNILLDRSGNIKLCDFGISGQL--VDSIAKTRDA 186

Query: 240 GT 241
           G 
Sbjct: 187 GC 188

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 27/142 (19%), Positives = 53/142 (37%), Gaps = 42/142 (29%)

Query: 124 KEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMD 183
            +     + E+EI+ +++H  ++ +  ++ A     +V E +    L            D
Sbjct: 181 ADPALNVETEIEILKKLNHPCIIKIKNFFDA-EDYYIVLELMEGGEL-----------FD 228

Query: 184 WPTRIKIALGS-------------AKGLAYLHD------DLA--NILLDFKFEA---KVA 219
              ++ +                    + YLH+      DL   N+LL  + E    K+ 
Sbjct: 229 ---KV-VGNKRLKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKIT 284

Query: 220 DFGLAKIASDVNTHVSTRVMGT 241
           DFG +KI  +  + + T   GT
Sbjct: 285 DFGHSKILGE-TSLMRTLC-GT 304

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* Length = 361

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 33/111 (29%), Positives = 49/111 (44%), Gaps = 16/111 (14%)

Query: 129 EFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPT-MDWPTR 187
           E + EV I+ +V H ++++L   Y   +  +L+ E V    L   L  K   +  +  + 
Sbjct: 61  EIEREVSILRQVLHPNIITLHDVYENRTDVVLILELVSGGELFDFLAQKESLSEEEATSF 120

Query: 188 IKIALGSAKGLAYLHD------DL--ANILLDFKFEA----KVADFGLAKI 226
           IK  L    G+ YLH       DL   NI+L  K       K+ DFGLA  
Sbjct: 121 IKQILD---GVNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHE 168

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 25/170 (14%), Positives = 46/170 (27%), Gaps = 45/170 (26%)

Query: 112 FGYVHRGV--------------LPNGKEGEREFQ-AEVEIISRV-HHKHLVSLVGYYTAG 155
           FG V + V               P     + +    EV   + +  H H+V     +   
Sbjct: 24  FGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAED 83

Query: 156 SQRMLVYEFVLNNTLVFHL--HGKGQPTMDWPTRIKIALGSAKGLAYLHD------DL-- 205
              ++  E+    +L   +  + +            + L   +GL Y+H       D+  
Sbjct: 84  DHMLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIHSMSLVHMDIKP 143

Query: 206 ANILLD-------------------FKFEAKVADFGLAKIASDVNTHVST 236
           +NI +                     K   K+ D G     S        
Sbjct: 144 SNIFISRTSIPNAASEEGDEDDWASNKVMFKIGDLGHVTRISSPQVEEGD 193

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... Length = 420

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 29/129 (22%), Positives = 58/129 (44%), Gaps = 29/129 (22%)

Query: 133 EVEIISRVHHKHLVSLVGYYTAGSQRM------LVYEFVLNNTL--VFHLHGKGQPTMDW 184
           E++I+ ++ H ++V L  ++ +  ++       LV ++V   T+  V   + + + T+  
Sbjct: 97  ELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYV-PETVYRVARHYSRAKQTLP- 154

Query: 185 PTRIKI----ALGSAKGLAYLHD------DL--ANILLD-FKFEAKVADFGLAKIAS--D 229
              +K+         + LAY+H       D+   N+LLD      K+ DFG AK     +
Sbjct: 155 VIYVKLYMYQLF---RSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGE 211

Query: 230 VNTH-VSTR 237
            N   + +R
Sbjct: 212 PNVSYICSR 220

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 35/188 (18%), Positives = 63/188 (33%), Gaps = 32/188 (17%)

Query: 81  SLGFSKSTFTYEELARATDGFSDANLLRQDGFGYVHRGV-LPNGKE-------------- 125
            L  +   F   +    ++ +     L    +G V          E              
Sbjct: 19  DLQATPGMFITSKKGHLSEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTS 78

Query: 126 GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPT-MDW 184
              +   EV ++  + H +++ L  ++       LV E      L   +  + +   +D 
Sbjct: 79  SNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLVMECYKGGELFDEIIHRMKFNEVDA 138

Query: 185 PTRIKIALGSAKGLAYLHD------DL--ANILLDFKFEA---KVADFGLAKIASDVNTH 233
              IK  L    G+ YLH       DL   N+LL+ K +    K+ DFGL+ +  +    
Sbjct: 139 AVIIKQVLS---GVTYLHKHNIVHRDLKPENLLLESKEKDALIKIVDFGLSAVFEN--QK 193

Query: 234 VSTRVMGT 241
                +GT
Sbjct: 194 KMKERLGT 201

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B Length = 326

 Score = 43.3 bits (103), Expect = 3e-05
 Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 16/103 (15%)

Query: 137 ISRVHHKHLVSL----VGYYTAGSQRM-LVYEFVLNNTLVFHLHGKGQPTMDWPTRIK-I 190
           +    H ++V L        T    ++ LV+E  ++  L  +L    +P +     IK +
Sbjct: 68  LETFEHPNVVRLFDVCTVSRTDRETKLTLVFEH-VDQDLTTYLDKVPEPGVP-TETIKDM 125

Query: 191 ALGSAKGLAYLHD------DL--ANILLDFKFEAKVADFGLAK 225
                +GL +LH       DL   NIL+    + K+ADFGLA+
Sbjct: 126 MFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLAR 168

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A Length = 325

 Score = 43.0 bits (102), Expect = 3e-05
 Identities = 30/130 (23%), Positives = 50/130 (38%), Gaps = 15/130 (11%)

Query: 124 KEGEREFQAEVEIISRV-HHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTM 182
           K  E   Q E+  +     H ++V L   +       LV E +    L   +  K   + 
Sbjct: 46  KRMEANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELLNGGELFERIKKKKHFSE 105

Query: 183 DWPTRIKIALGSAKGLAYLHD------DL--ANILLDFKFEA---KVADFGLAKIASDVN 231
              + I   L SA  ++++HD      DL   N+L   + +    K+ DFG A++    N
Sbjct: 106 TEASYIMRKLVSA--VSHMHDVGVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDN 163

Query: 232 THVSTRVMGT 241
             + T    T
Sbjct: 164 QPLKTPC-FT 172

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444

 Score = 43.1 bits (102), Expect = 4e-05
 Identities = 27/123 (21%), Positives = 44/123 (35%), Gaps = 16/123 (13%)

Query: 133 EVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPT-MDWPTRIKIA 191
           E  I   + H ++V L    +      L+++ V    L   +  +   +  D    I+  
Sbjct: 60  EARICRLLKHPNIVRLHDSISEEGHHYLIFDLVTGGELFEDIVAREYYSEADASHCIQQI 119

Query: 192 LGSAKGLAYLHD------DL--ANILLDFKFEA---KVADFGLAKIASDVNTHVSTRVMG 240
           L     + + H       +L   N+LL  K +    K+ADFGLA               G
Sbjct: 120 LE---AVLHCHQMGVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQAWFGFA-G 175

Query: 241 TFG 243
           T G
Sbjct: 176 TPG 178

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* Length = 322

 Score = 43.0 bits (102), Expect = 4e-05
 Identities = 24/130 (18%), Positives = 48/130 (36%), Gaps = 40/130 (30%)

Query: 124 KEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMD 183
            +     + E+EI+ +++H  ++ +  ++ A     +V E +    L F           
Sbjct: 56  ADPALNVETEIEILKKLNHPCIIKIKNFFDA-EDYYIVLELMEGGEL-FD---------- 103

Query: 184 WPTRIKIALGS-------------AKGLAYLHD------DLA--NILLDFKFEA---KVA 219
              ++ +                    + YLH+      DL   N+LL  + E    K+ 
Sbjct: 104 ---KV-VGNKRLKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKIT 159

Query: 220 DFGLAKIASD 229
           DFG +KI  +
Sbjct: 160 DFGHSKILGE 169

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362

 Score = 43.1 bits (102), Expect = 4e-05
 Identities = 39/187 (20%), Positives = 67/187 (35%), Gaps = 32/187 (17%)

Query: 71  APILPQSPGLSLGFSKSTFTYEELARATDGFSDANLLRQDGFGYVHRGV----------- 119
            P +    G       S F      + +D +     L +  F  V R V           
Sbjct: 1   GPHMASMTGGQQMGRGSEFMMNASTKFSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAK 60

Query: 120 -----LPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHL 174
                  + ++ ++  + E  I  ++ H ++V L       S   LV++ V    L   +
Sbjct: 61  IINTKKLSARDFQK-LEREARICRKLQHPNIVRLHDSIQEESFHYLVFDLVTGGELFEDI 119

Query: 175 HGKGQPT-MDWPTRIKIALGSAKGLAYLHD------DL--ANILLDFKFEA---KVADFG 222
             +   +  D    I+  L   + +AY H       +L   N+LL  K +    K+ADFG
Sbjct: 120 VAREFYSEADASHCIQQIL---ESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFG 176

Query: 223 LAKIASD 229
           LA   +D
Sbjct: 177 LAIEVND 183

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... Length = 283

 Score = 42.9 bits (102), Expect = 4e-05
 Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 16/111 (14%)

Query: 129 EFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPT-MDWPTR 187
           E + EV I+  + H ++++L   +   +  +L+ E V    L   L  K   T  +    
Sbjct: 54  EIEREVNILREIRHPNIITLHDIFENKTDVVLILELVSGGELFDFLAEKESLTEDEATQF 113

Query: 188 IKIALGSAKGLAYLHD------DL--ANILLDFKFEA----KVADFGLAKI 226
           +K  L    G+ YLH       DL   NI+L  K       K+ DFG+A  
Sbjct: 114 LKQILD---GVHYLHSKRIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHK 161

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} Length = 318

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 11/62 (17%)

Query: 189 KIALGSAKGLAYLHDDL---------ANILLDFKFEAKVADFGLAKIASDVNTHVSTRVM 239
           K+ +   K L YL +           +NILLD + + K+ DFG++     V+     R  
Sbjct: 128 KMTVAIVKALYYLKEKHGVIHRDVKPSNILLDERGQIKLCDFGISGRL--VDDKAKDRSA 185

Query: 240 GT 241
           G 
Sbjct: 186 GC 187

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284

 Score = 42.5 bits (101), Expect = 5e-05
 Identities = 29/132 (21%), Positives = 49/132 (37%), Gaps = 40/132 (30%)

Query: 122 NGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPT 181
           + ++ ++  + E  I  ++ H ++V L       S   LV++ V    L F         
Sbjct: 45  SARDFQK-LEREARICRKLQHPNIVRLHDSIQEESFHYLVFDLVTGGEL-FE-------- 94

Query: 182 MDWPTRIKIALGS-------------AKGLAYLHD------DLA--NILLDFKFEA---K 217
                 I +A                 + +AY H       +L   N+LL  K +    K
Sbjct: 95  -----DI-VAREFYSEADASHCIQQILESIAYCHSNGIVHRNLKPENLLLASKAKGAAVK 148

Query: 218 VADFGLAKIASD 229
           +ADFGLA   +D
Sbjct: 149 LADFGLAIEVND 160

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326

 Score = 42.4 bits (100), Expect = 5e-05
 Identities = 30/145 (20%), Positives = 58/145 (40%), Gaps = 37/145 (25%)

Query: 112 FGYVHRG------------VLPNGKEGEREFQAEVEIISRV-HHKHLVSLVGYYTAGSQR 158
           +G V++G            V+    + E E + E+ ++ +  HH+++ +  G +   +  
Sbjct: 37  YGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPP 96

Query: 159 M------LVYEFVLNNTL--VFHLHGKGQPTMDWPTRIKIAL---GSAKGLAYLHD---- 203
                  LV EF    ++  +           +W     IA       +GL++LH     
Sbjct: 97  GMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEW-----IAYICREILRGLSHLHQHKVI 151

Query: 204 --DL--ANILLDFKFEAKVADFGLA 224
             D+   N+LL    E K+ DFG++
Sbjct: 152 HRDIKGQNVLLTENAEVKLVDFGVS 176

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score = 42.8 bits (101), Expect = 6e-05
 Identities = 34/211 (16%), Positives = 65/211 (30%), Gaps = 43/211 (20%)

Query: 69  SEAPILPQSPGLSLGFSKSTFTYEELARATDGFSDANLLRQDGFGYVHRGV--------- 119
             +          +  +   +  ++  +  + +     L    +G V             
Sbjct: 6   HHSSGRENLYFQGIAINPGMYVRKKEGKIGESYFKVRKLGSGAYGEVLLCKEKNGHSEKA 65

Query: 120 -----------------LPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVY 162
                              N ++   E   E+ ++  + H +++ L   +       LV 
Sbjct: 66  IKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFDVFEDKKYFYLVT 125

Query: 163 EFVLNNTLVFHLHGKGQPT-MDWPTRIKIALGSAKGLAYLHD------DL--ANILLDFK 213
           EF     L   +  + +    D    +K  L    G+ YLH       D+   NILL+ K
Sbjct: 126 EFYEGGELFEQIINRHKFDECDAANIMKQILS---GICYLHKHNIVHRDIKPENILLENK 182

Query: 214 FEA---KVADFGLAKIASDVNTHVSTRVMGT 241
                 K+ DFGL+   S    +     +GT
Sbjct: 183 NSLLNIKIVDFGLSSFFSK--DYKLRDRLGT 211

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277

 Score = 42.2 bits (100), Expect = 6e-05
 Identities = 33/160 (20%), Positives = 52/160 (32%), Gaps = 30/160 (18%)

Query: 107 LRQDGFGYVHRGVLPNGK-------------EGEREFQAEVEIISRVHHKHLVSLVGYYT 153
           + +  +G V   V    +             E    F+ E+EI+  + H +++ L   + 
Sbjct: 17  IGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFE 76

Query: 154 AGSQRMLVYEFVLNNTLVFHLHGKGQPT-MDWPTRIKIALGSAKGLAYLHD------DLA 206
             +   LV E      L   +  K      D    +K  L     +AY H       DL 
Sbjct: 77  DNTDIYLVMELCTGGELFERVVHKRVFRESDAARIMKDVL---SAVAYCHKLNVAHRDLK 133

Query: 207 --NILLDFKFEA---KVADFGLAKIASDVNTHVSTRVMGT 241
             N L          K+ DFGLA         +    +GT
Sbjct: 134 PENFLFLTDSPDSPLKLIDFGLAARFKP--GKMMRTKVGT 171

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A Length = 342

 Score = 42.3 bits (100), Expect = 6e-05
 Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 16/122 (13%)

Query: 133 EVEIISR-VHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIA 191
           E+EI+ R   H ++++L   Y  G    +V E +    L+  +  +   +    + +   
Sbjct: 65  EIEILLRYGQHPNIITLKDVYDDGKYVYVVTELMKGGELLDKILRQKFFSEREASAVLFT 124

Query: 192 LGSAKGLAYLHD------DL--ANILLDFKFEA----KVADFGLAKIASDVNTHVSTRVM 239
           +     + YLH       DL  +NIL   +       ++ DFG AK     N  + T   
Sbjct: 125 ITKT--VEYLHAQGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAENGLLMTPC- 181

Query: 240 GT 241
            T
Sbjct: 182 YT 183

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 405

 Score = 42.5 bits (100), Expect = 6e-05
 Identities = 27/129 (20%), Positives = 53/129 (41%), Gaps = 23/129 (17%)

Query: 133 EVEIISRVHHKHLVSLVGYYTAGSQR--MLVYEFV---LNNTLVFHLHGKGQPTMDW--P 185
           E+ ++  + H +++SL   + + + R   L++++    L + + FH   K          
Sbjct: 68  EIALLRELKHPNVISLQKVFLSHADRKVWLLFDYAEHDLWHIIKFHRASKANKKPVQLPR 127

Query: 186 TRIK-IALGSAKGLAYLHD------DL--ANILLDFKFEA----KVADFGLAKIASD--- 229
             +K +      G+ YLH       DL  ANIL+  +       K+AD G A++ +    
Sbjct: 128 GMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLK 187

Query: 230 VNTHVSTRV 238
               +   V
Sbjct: 188 PLADLDPVV 196

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* Length = 329

 Score = 42.2 bits (100), Expect = 8e-05
 Identities = 22/114 (19%), Positives = 41/114 (35%), Gaps = 32/114 (28%)

Query: 133 EVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFV-------LNNTLVFHLHGKGQPTMDWP 185
           EV ++  + H++++ L        +  L++E+        ++                  
Sbjct: 83  EVSLLKELQHRNIIELKSVIHHNHRLHLIFEYAENDLKKYMDKNPDVS-----------M 131

Query: 186 TRIKIALGS-AKGLAYLHD------DL--ANILLDFKFEA-----KVADFGLAK 225
             IK  L     G+ + H       DL   N+LL     +     K+ DFGLA+
Sbjct: 132 RVIKSFLYQLINGVNFCHSRRCLHRDLKPQNLLLSVSDASETPVLKIGDFGLAR 185

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* Length = 351

 Score = 41.8 bits (99), Expect = 1e-04
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 8/37 (21%)

Query: 196 KGLAYLHD------DL--ANILLDFKFEAKVADFGLA 224
            GL Y+H       D+  AN+L+      K+ADFGLA
Sbjct: 135 NGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLA 171

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7 Length = 367

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 9/51 (17%)

Query: 196 KGLAYLHD------DL--ANILLDFKFEAKVADFGLAKIASDVNT-HVSTR 237
           KGL Y+H       DL   N+ ++   E K+ DFGLA+ A    T +V TR
Sbjct: 139 KGLRYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLARQADSEMTGYVVTR 189

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens} Length = 353

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 9/51 (17%)

Query: 196 KGLAYLHD------DL--ANILLDFKFEAKVADFGLAKIASDVNTH-VSTR 237
           KGL Y+H       DL   N+ ++   E K+ DFGLA+ A    T  V TR
Sbjct: 137 KGLKYIHSAGVVHRDLKPGNLAVNEDCELKILDFGLARHADAEMTGYVVTR 187

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 27/134 (20%), Positives = 49/134 (36%), Gaps = 21/134 (15%)

Query: 124 KEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFV----LNNTLVFHLHGKGQ 179
           +    + +AE+E++  + H +++ +   +       +V E      L   +V        
Sbjct: 61  QVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIVMETCEGGELLERIVSAQARGKA 120

Query: 180 PT-MDWPTRIKIALGSAKGLAYLHD------DLA--NILLDFKFEA---KVADFGLAKIA 227
            +       +K  +     LAY H       DL   NIL          K+ DFGLA++ 
Sbjct: 121 LSEGYVAELMKQMMN---ALAYFHSQHVVHKDLKPENILFQDTSPHSPIKIIDFGLAELF 177

Query: 228 SDVNTHVSTRVMGT 241
              + H +    GT
Sbjct: 178 KS-DEHSTNAA-GT 189

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 23/146 (15%), Positives = 45/146 (30%), Gaps = 26/146 (17%)

Query: 124 KEGEREFQAEVEIISRV-HHKHLVSLVGYYTAGSQRMLVYEFV---LNNTLVFH-LHGKG 178
            +       E+++++    H +++      T      +  E     L + +    +  + 
Sbjct: 49  IDFCDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALELCNLNLQDLVESKNVSDEN 108

Query: 179 QPTMDWPTRIKIALGSAKGLAYLHD------DL--ANILLDFK-------------FEAK 217
                    I +    A G+A+LH       DL   NIL+                    
Sbjct: 109 LKLQKEYNPISLLRQIASGVAHLHSLKIIHRDLKPQNILVSTSSRFTADQQTGAENLRIL 168

Query: 218 VADFGLAKIASDVNTHVSTRVMGTFG 243
           ++DFGL K      +   T +    G
Sbjct: 169 ISDFGLCKKLDSGQSSFRTNLNNPSG 194

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 41.6 bits (97), Expect = 1e-04
 Identities = 7/121 (5%), Positives = 20/121 (16%), Gaps = 14/121 (11%)

Query: 130 FQAEVEIISRVHHKHLVSLVGYYTAGS--QRMLVYEFVLNNTL----VFHLHGKGQPTMD 183
                + ++         L       +    +L+      +              +    
Sbjct: 133 LLLPSDAVAVQSQPPFAQLSPGQDDYAVANYLLLMPAASVDLELLFSTLDFVYVFRGDEG 192

Query: 184 WPTRIKIALGSAKGLAYLHD------DL--ANILLDFKFEAKVADFGLAKIASDVNTHVS 235
                 +     +  A L             N+ +       + D              S
Sbjct: 193 ILALHILTAQLIRLAANLQSKGLVHGHFTPDNLFIMPDGRLMLGDVSALWKVGTRGPASS 252

Query: 236 T 236
            
Sbjct: 253 V 253

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7 Length = 318

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 29/112 (25%), Positives = 43/112 (38%), Gaps = 20/112 (17%)

Query: 132 AEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIK-- 189
            E  ++S V H  ++ + G +    Q  ++ +++    L   L    +         K  
Sbjct: 55  DERLMLSIVTHPFIIRMWGTFQDAQQIFMIMDYIEGGELFSLLRKSQRFPNP---VAKFY 111

Query: 190 ---IALGSAKGLAYLHD------DLA--NILLDFKFEAKVADFGLAKIASDV 230
              + L     L YLH       DL   NILLD     K+ DFG AK   DV
Sbjct: 112 AAEVCLA----LEYLHSKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDV 159

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major} Length = 360

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 31/135 (22%), Positives = 56/135 (41%), Gaps = 29/135 (21%)

Query: 128 REFQAEVEIISRVHHKHLVSLVGYYTAGSQR-------MLVYEFV---LNNTLVFHLHGK 177
           RE Q  ++ ++ +HH ++V L  Y+    +R        +V E+V   L+     +   +
Sbjct: 65  RELQ-IMQDLAVLHHPNIVQLQSYFYTLGERDRRDIYLNVVMEYVPDTLHRCCRNYYRRQ 123

Query: 178 GQPTMDWPTRIKIAL-GSAKGLAYLHD--------DL--ANILLDFK-FEAKVADFGLAK 225
             P       IK+ L    + +  LH         D+   N+L++      K+ DFG AK
Sbjct: 124 VAPPPI---LIKVFLFQLIRSIGCLHLPSVNVCHRDIKPHNVLVNEADGTLKLCDFGSAK 180

Query: 226 IAS--DVNTH-VSTR 237
             S  + N   + +R
Sbjct: 181 KLSPSEPNVAYICSR 195

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 31/136 (22%), Positives = 49/136 (36%), Gaps = 18/136 (13%)

Query: 124 KEGEREFQAEVEIISRV-HHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTM 182
            E       EV+++     H +++           + +  E     TL  ++  K    +
Sbjct: 58  PECFSFADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAIELC-AATLQEYVEQKDFAHL 116

Query: 183 DWPTRIKIALGSAKGLAYLHD------DL--ANILLDFKFE-----AKVADFGLAKIASD 229
                I +   +  GLA+LH       DL   NIL+          A ++DFGL K  + 
Sbjct: 117 G-LEPITLLQQTTSGLAHLHSLNIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAV 175

Query: 230 VNTHVSTR--VMGTFG 243
                S R  V GT G
Sbjct: 176 GRHSFSRRSGVPGTEG 191

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} Length = 335

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 27/112 (24%), Positives = 40/112 (35%), Gaps = 33/112 (29%)

Query: 133 EVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNT---LVFHLHGKG---------QP 180
           E+ I+SRV H +++ +              +   N     LV   HG G          P
Sbjct: 79  EIAILSRVEHANIIKV-------------LDIFENQGFFQLVMEKHGSGLDLFAFIDRHP 125

Query: 181 TMDWPTRIKIALGSAKGLAYLHD------DLA--NILLDFKFEAKVADFGLA 224
            +D P    I       + YL        D+   NI++   F  K+ DFG A
Sbjct: 126 RLDEPLASYIFRQLVSAVGYLRLKDIIHRDIKDENIVIAEDFTIKLIDFGSA 177

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 18/132 (13%)

Query: 122 NGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPT 181
             K+       EVE++ ++ H +++ L       S   +V E      L   +  + + +
Sbjct: 61  KNKDTST-ILREVELLKKLDHPNIMKLFEILEDSSSFYIVGELYTGGELFDEIIKRKRFS 119

Query: 182 -MDWPTRIKIALGSAKGLAYLHD------DLA--NILLDFKFEA---KVADFGLAKIASD 229
             D    IK       G+ Y+H       DL   NILL+ K +    K+ DFGL+     
Sbjct: 120 EHDAARIIKQVFS---GITYMHKHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQ 176

Query: 230 VNTHVSTRVMGT 241
            NT +  R+ GT
Sbjct: 177 -NTKMKDRI-GT 186

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 40.8 bits (95), Expect = 3e-04
 Identities = 21/85 (24%), Positives = 30/85 (35%), Gaps = 6/85 (7%)

Query: 2    PYGGRQQHWQQNVPPPAAHVVTQPPRSSP--PPLVASSP---PHSPVYTPSPPLPPPPFM 56
            P          +  P +       P  SP  P    +SP   P SP Y+P+ P    P  
Sbjct: 1579 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTS 1637

Query: 57   SNSGGSGSNYSGSEAPILPQSPGLS 81
             +   +  +YS +     P SP  S
Sbjct: 1638 PSYSPTSPSYSPTSPSYSPTSPAYS 1662

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens} Length = 412

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 30/121 (24%), Positives = 50/121 (41%), Gaps = 11/121 (9%)

Query: 130 FQAEVEIISRVHHKHLVSLVGYYTAGSQRML--VYEFVLNNTLVFHLHGKGQPTMDWPTR 187
           F+ E +++     + +  L  ++    +  L  V E+ +   L+  L   G+       R
Sbjct: 108 FREERDVLVNGDRRWITQL--HFAFQDENYLYLVMEYYVGGDLLTLLSKFGERIPAEMAR 165

Query: 188 -----IKIALGSAKGLAYLHDDLA--NILLDFKFEAKVADFGLAKIASDVNTHVSTRVMG 240
                I +A+ S   L Y+H D+   NILLD     ++ADFG         T  S   +G
Sbjct: 166 FYLAEIVMAIDSVHRLGYVHRDIKPDNILLDRCGHIRLADFGSCLKLRADGTVRSLVAVG 225

Query: 241 T 241
           T
Sbjct: 226 T 226

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ... Length = 367

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 9/51 (17%)

Query: 196 KGLAYLHD------DL--ANILLDFKFEAKVADFGLAKIASDVNT-HVSTR 237
           +GL Y+H       DL  +N+ ++   E K+ DFGLA+  +D  T +V+TR
Sbjct: 143 RGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTADEMTGYVATR 193

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 40.6 bits (94), Expect = 4e-04
 Identities = 11/76 (14%), Positives = 20/76 (26%)

Query: 6  RQQHWQQNVPPPAAHVVTQPPRSSPPPLVASSPPHSPVYTPSPPLPPPPFMSNSGGSGSN 65
          ++ + Q  +         Q P    PP   ++   S      PP    P M         
Sbjct: 6  KRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPA 65

Query: 66 YSGSEAPILPQSPGLS 81
                 I   +  ++
Sbjct: 66 QEQLHQQIDQATTSMN 81

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 39.8 bits (92), Expect = 6e-04
 Identities = 13/78 (16%), Positives = 21/78 (26%)

Query: 2   PYGGRQQHWQQNVPPPAAHVVTQPPRSSPPPLVASSPPHSPVYTPSPPLPPPPFMSNSGG 61
           P G      QQ    PA   + Q    +   +      + P+  P+  + P   +     
Sbjct: 49  PQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTP 108

Query: 62  SGSNYSGSEAPILPQSPG 79
                    AP   Q   
Sbjct: 109 LQQQQQPMAAPAYGQPSA 126

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* Length = 327

 Score = 39.9 bits (94), Expect = 4e-04
 Identities = 28/120 (23%), Positives = 48/120 (40%), Gaps = 20/120 (16%)

Query: 123 GKEGEREFQAEVEIISRV-HHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHL---HGKG 178
           G++   E   E+ ++        +++L   Y   S+ +L+ E+     + F L       
Sbjct: 68  GQDCRAEILHEIAVLELAKSCPRVINLHEVYENTSEIILILEYAAGGEI-FSLCLPELAE 126

Query: 179 QPT-MDWPTRIKIALGSAKGLAYLHD------DL--ANILLDFKFEA---KVADFGLAKI 226
             +  D    IK  L    G+ YLH       DL   NILL   +     K+ DFG+++ 
Sbjct: 127 MVSENDVIRLIKQILE---GVYYLHQNNIVHLDLKPQNILLSSIYPLGDIKIVDFGMSRK 183

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* Length = 446

 Score = 40.1 bits (94), Expect = 4e-04
 Identities = 30/116 (25%), Positives = 44/116 (37%), Gaps = 13/116 (11%)

Query: 131 QAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKI 190
             E  ++    H  L +L   +    +   V E+     L FHL  +   + D   R   
Sbjct: 196 LTENRVLQNSRHPFLTALKYSFQTHDRLCFVMEYANGGELFFHLSRERVFSEDR-ARFYG 254

Query: 191 A-LGSAKGLAYLHDD---------LANILLDFKFEAKVADFGLAKIASDVNTHVST 236
           A + SA  L YLH +         L N++LD     K+ DFGL K        + T
Sbjct: 255 AEIVSA--LDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMKT 308

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 14/107 (13%)

Query: 133 EVEIISRVHHKHLVSLVGYYTAGSQRM--LVYEFVLNNTLVFHLHGKGQPTMDWPTRIKI 190
           EV I+  ++H ++V L  +    +++   L+ E+     +  +L   G+           
Sbjct: 64  EVRIMKILNHPNIVKL--FEVIETEKTLYLIMEYASGGEVFDYLVAHGRMKEKEARSKFR 121

Query: 191 ALGSAKGLAYLHD------DL--ANILLDFKFEAKVADFGLAKIASD 229
            + SA  + Y H       DL   N+LLD     K+ADFG +   + 
Sbjct: 122 QIVSA--VQYCHQKRIVHRDLKAENLLLDADMNIKIADFGFSNEFTV 166

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A* Length = 437

 Score = 39.7 bits (93), Expect = 5e-04
 Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 9/120 (7%)

Query: 130 FQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLH-GKGQPTMDWPTR- 187
           F+ E +++     K + +L   +   +   LV ++ +   L+  L   + +   +   R 
Sbjct: 121 FREERDVLVNGDSKWITTLHYAFQDDNNLYLVMDYYVGGDLLTLLSKFEDRLPEEM-ARF 179

Query: 188 ----IKIALGSAKGLAYLHDDL--ANILLDFKFEAKVADFGLAKIASDVNTHVSTRVMGT 241
               + IA+ S   L Y+H D+   NIL+D     ++ADFG      +  T  S+  +GT
Sbjct: 180 YLAEMVIAIDSVHQLHYVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGTVQSSVAVGT 239

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 5e-04
 Identities = 22/145 (15%), Positives = 42/145 (28%), Gaps = 33/145 (22%)

Query: 90  TYEELARATDGFSDANLLRQDGFGYVHRGVLPNGKEGEREFQAEVEIISRVHHKHLVSLV 149
              ++    +     +L+ +          +P+      E + ++E    +H      +V
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTIS--IPSI---YLELKVKLENEYALHRS----IV 450

Query: 150 GYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMD--WPTRIKIALG---SAKGLAYLHDD 204
            +Y              N    F       P +D  + + I    G              
Sbjct: 451 DHY--------------NIPKTFDSDDLIPPYLDQYFYSHI----GHHLKNIEHPERMTL 492

Query: 205 LANILLDFKF-EAKVADFGLAKIAS 228
              + LDF+F E K+     A  AS
Sbjct: 493 FRMVFLDFRFLEQKIRHDSTAWNAS 517

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3o71_A 3r63_A 3c9w_A* 2y9q_A* 3sa0_A* 1wzy_A* 2e14_A* 1tvo_A* 2ojg_A* 2oji_A* ... Length = 364

 Score = 39.6 bits (93), Expect = 5e-04
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 15/57 (26%)

Query: 196 KGLAYLHD------DL--ANILLDFKFEAKVADFGLAKIASDVNTH-------VSTR 237
           +GL Y+H       DL  +N+LL+   + K+ DFGLA++A   + H       V+TR
Sbjct: 139 RGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATR 195

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A* Length = 410

 Score = 39.7 bits (93), Expect = 5e-04
 Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 15/122 (12%)

Query: 130 FQAEVEIISRVHHKHLVSLVGYYTAGSQRML--VYEFVLNNTLVFHLHGKGQPTMDWPTR 187
           F  E +I++  +   +V L  +Y     R L  V E++    LV  +         W  R
Sbjct: 116 FWEERDIMAFANSPWVVQL--FYAFQDDRYLYMVMEYMPGGDLVNLMS-NYDVPEKW-AR 171

Query: 188 -----IKIALGSAKGLAYLHDDL--ANILLDFKFEAKVADFGLAKIASDVNTHVSTRVM- 239
                + +AL +   + ++H D+   N+LLD     K+ADFG      +    V      
Sbjct: 172 FYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCM-KMNKEGMVRCDTAV 230

Query: 240 GT 241
           GT
Sbjct: 231 GT 232

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} Length = 326

 Score = 39.5 bits (93), Expect = 5e-04
 Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 16/111 (14%)

Query: 129 EFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPT-MDWPTR 187
           + + EV I+  + H ++++L   Y   +  +L+ E V    L   L  K   T  +    
Sbjct: 60  DIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEEATEF 119

Query: 188 IKIALGSAKGLAYLHD------DL--ANILLDFKFEA----KVADFGLAKI 226
           +K  L    G+ YLH       DL   NI+L  +       K+ DFGLA  
Sbjct: 120 LKQILN---GVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHK 167

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345

 Score = 39.4 bits (92), Expect = 5e-04
 Identities = 26/175 (14%), Positives = 45/175 (25%), Gaps = 48/175 (27%)

Query: 117 RGVLPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHG 176
             +     +     + EV ++ ++HH ++  L   Y       LV E      L+  L+ 
Sbjct: 62  NKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYEDEQYICLVMELCHGGHLLDKLNV 121

Query: 177 KGQPTMDWPTRIKIALGSAK--------------------------------------GL 198
               +        +                                             L
Sbjct: 122 FIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSAL 181

Query: 199 AYLHD------DL--ANILLDFKFEA--KVADFGLAKIASDVNTHVSTRVMGTFG 243
            YLH+      D+   N L         K+ DFGL+K    +N      +    G
Sbjct: 182 HYLHNQGICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAG 236

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A Length = 316

 Score = 39.2 bits (92), Expect = 6e-04
 Identities = 27/132 (20%), Positives = 57/132 (43%), Gaps = 16/132 (12%)

Query: 125 EGEREFQAEVEIISRV-HHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMD 183
                   EVE++ +   H++++ L+ ++    +  LV+E +   +++ H+H +      
Sbjct: 52  HIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYLVFEKMRGGSILSHIHKRRHFNEL 111

Query: 184 WPTRIKIALGSAKGLAYLHD------DL--ANILLDFKFEA---KVADFGLAKI--ASDV 230
             + +   + SA  L +LH+      DL   NIL +   +    K+ DF L      +  
Sbjct: 112 EASVVVQDVASA--LDFLHNKGIAHRDLKPENILCEHPNQVSPVKICDFDLGSGIKLNGD 169

Query: 231 NTHVSTRVMGTF 242
            + +ST  + T 
Sbjct: 170 CSPISTPELLTP 181

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score = 39.3 bits (92), Expect = 7e-04
 Identities = 33/162 (20%), Positives = 56/162 (34%), Gaps = 32/162 (19%)

Query: 107 LRQDGFGYVHRGV-LPNGK--------------EGEREFQAEVEIISRVHHKHLVSLVGY 151
           L +  FG V +       +              +       EVE++ ++ H +++ L   
Sbjct: 30  LGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEI 89

Query: 152 YTAGSQRMLVYEFVLNNTLVFHLHGKGQPT-MDWPTRIKIALGSAKGLAYLHD------D 204
               S   +V E      L   +  + + +  D    IK       G+ Y+H       D
Sbjct: 90  LEDSSSFYIVGELYTGGELFDEIIKRKRFSEHDAARIIKQVFS---GITYMHKHNIVHRD 146

Query: 205 L--ANILLDFKFEA---KVADFGLAKIASDVNTHVSTRVMGT 241
           L   NILL+ K +    K+ DFGL+              +GT
Sbjct: 147 LKPENILLESKEKDCDIKIIDFGLSTCFQQ--NTKMKDRIGT 186

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... Length = 276

 Score = 38.7 bits (91), Expect = 7e-04
 Identities = 24/111 (21%), Positives = 43/111 (38%), Gaps = 22/111 (19%)

Query: 133 EVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIAL 192
           E+ I   ++H+++V   G+   G+ + L  E+     L   +             +    
Sbjct: 55  EICINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDI--------GMPEPD 106

Query: 193 GSAK------GLAYLHD------DLA--NILLDFKFEAKVADFGLAKIASD 229
                     G+ YLH       D+   N+LLD +   K++DFGLA +   
Sbjct: 107 AQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRY 157

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} Length = 305

 Score = 38.8 bits (91), Expect = 7e-04
 Identities = 24/127 (18%), Positives = 48/127 (37%), Gaps = 25/127 (19%)

Query: 115 VHRGVLPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRM--LVYEFVLNNTL-V 171
           + +  L     GE   + E++++ R+ HK+++ LV       ++   +V E+ +     +
Sbjct: 38  LKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKMYMVMEYCVCGMQEM 97

Query: 172 FHLHGKGQPTMDWPTRIKIALGSAK------GLAYLHD------DL--ANILLDFKFEAK 217
                +         R  +            GL YLH       D+   N+LL      K
Sbjct: 98  LDSVPEK--------RFPVCQAHGYFCQLIDGLEYLHSQGIVHKDIKPGNLLLTTGGTLK 149

Query: 218 VADFGLA 224
           ++  G+A
Sbjct: 150 ISALGVA 156

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* Length = 276

 Score = 38.7 bits (91), Expect = 9e-04
 Identities = 28/113 (24%), Positives = 45/113 (39%), Gaps = 26/113 (23%)

Query: 133 EVEIISRVHHKHLVSLVGYYTAGSQRM--LVYEFVLNNTLVFHLHGKGQPTMDWPTRIKI 190
           E++ +    H H++ L  Y    +     +V E+V    L  ++   G        R++ 
Sbjct: 61  EIQNLKLFRHPHIIKL--YQVISTPTDFFMVMEYVSGGELFDYICKHG--------RVEE 110

Query: 191 ALGSAK------GLAYLHD------DLA--NILLDFKFEAKVADFGLAKIASD 229
                        + Y H       DL   N+LLD    AK+ADFGL+ + SD
Sbjct: 111 MEARRLFQQILSAVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSD 163

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II} Length = 383

 Score = 38.9 bits (91), Expect = 9e-04
 Identities = 12/54 (22%), Positives = 25/54 (46%), Gaps = 12/54 (22%)

Query: 196 KGLAYLHD------DL--ANILLDFK-FEAKVADFGLAKIAS--DVNTH-VSTR 237
           + + ++H       D+   N+L++ K    K+ DFG AK     + +   + +R
Sbjct: 152 RAVGFIHSLGICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSEPSVAYICSR 205

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ... Length = 337

 Score = 38.7 bits (91), Expect = 9e-04
 Identities = 29/104 (27%), Positives = 42/104 (40%), Gaps = 12/104 (11%)

Query: 131 QAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKI 190
             E  ++    H  L +L   +    +   V E+     L FHL  +   T +   R   
Sbjct: 53  VTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRERVFTEER-ARFYG 111

Query: 191 A-LGSAKGLAYLHD------DL--ANILLDFKFEAKVADFGLAK 225
           A + SA  L YLH       D+   N++LD     K+ DFGL K
Sbjct: 112 AEIVSA--LEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCK 153

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} Length = 362

 Score = 38.8 bits (91), Expect = 9e-04
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 11/53 (20%)

Query: 196 KGLAYLHD------DL--ANILLDFKFEAKVADFGLAKIASDVNT---HVSTR 237
            GL  LH+      DL   NILL    +  + DF LA+  +       +V+ R
Sbjct: 145 LGLHVLHEAGVVHRDLHPGNILLADNNDITICDFNLAREDTADANKTHYVTHR 197

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	243
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	100.0
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	100.0
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	100.0
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	100.0
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.98
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	99.98
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	99.98
4aoj_A	329	High affinity nerve growth factor receptor; transf	99.98
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	99.97
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	99.97
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	99.97
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	99.97
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.97
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	99.97
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.96
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	99.96
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	99.95
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	99.95
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	99.94
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	99.94
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	99.94
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	99.94
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	99.94
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	99.94
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	99.94
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	99.94
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	99.94
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	99.94
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	99.94
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	99.94
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	99.94
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	99.93
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	99.93
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	99.93
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	99.93
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	99.93
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	99.93
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	99.93
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	99.93
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	99.93
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	99.93
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	99.93
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	99.93
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	99.93
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	99.93
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	99.93
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	99.93
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	99.93
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	99.93
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	99.93
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	99.93
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	99.93
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	99.92
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	99.92
3o0g_A	292	Cell division protein kinase 5; kinase activator c	99.92
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	99.92
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	99.92
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	99.92
3rp9_A	458	Mitogen-activated protein kinase; structural genom	99.92
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	99.92
3niz_A	311	Rhodanese family protein; structural genomics, str	99.92
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	99.92
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	99.92
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	99.92
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.92
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	99.92
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	99.92
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	99.92
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	99.92
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	99.92
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	99.92
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	99.92
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	99.92
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	99.92
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	99.92
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	99.92
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	99.92
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	99.92
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	99.92
3ork_A	311	Serine/threonine protein kinase; structural genomi	99.92
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	99.92
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	99.92
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	99.92
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	99.92
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	99.92
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	99.92
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	99.91
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.91
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	99.91
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	99.91
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	99.91
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	99.91
3soc_A	322	Activin receptor type-2A; structural genomics cons	99.91
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	99.91
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	99.91
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	99.91
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	99.91
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	99.91
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	99.91
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	99.91
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	99.91
3q4u_A	301	Activin receptor type-1; structural genomics conso	99.91
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	99.91
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	99.91
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	99.91
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	99.91
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	99.91
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	99.91
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	99.91
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	99.91
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	99.91
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	99.91
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	99.91
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	99.91
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	99.91
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	99.91
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	99.91
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	99.91
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	99.91
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	99.91
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	99.91
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	99.91
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	99.91
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	99.91
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	99.91
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.91
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	99.91
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	99.91
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	99.91
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	99.91
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	99.91
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	99.91
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	99.91
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	99.91
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	99.91
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	99.91
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	99.91
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	99.91
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	99.9
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	99.9
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	99.9
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	99.9
2a19_B	284	Interferon-induced, double-stranded RNA-activated	99.9
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	99.9
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	99.9
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	99.9
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	99.9
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	99.9
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	99.9
3bhy_A	283	Death-associated protein kinase 3; death associate	99.9
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	99.9
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	99.9
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	99.9
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	99.9
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	99.9
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	99.9
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	99.9
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	99.9
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	99.9
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	99.9
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.9
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	99.9
3pls_A	298	Macrophage-stimulating protein receptor; protein k	99.9
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	99.9
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	99.9
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.9
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	99.9
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	99.9
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	99.9
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.9
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	99.9
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	99.9
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	99.9
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	99.9
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	99.9
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	99.9
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	99.9
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	99.9
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	99.9
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	99.9
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	99.9
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	99.9
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	99.9
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	99.9
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	99.89
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	99.89
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	99.89
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	99.89
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	99.89
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	99.89
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	99.89
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	99.89
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	99.89
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	99.89
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	99.89
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	99.89
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	99.89
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	99.89
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	99.89
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	99.89
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	99.89
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	99.89
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	99.89
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	99.89
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	99.89
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	99.88
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	99.88
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	99.88
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	99.88
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	99.88
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.88
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	99.88
3uqc_A	286	Probable conserved transmembrane protein; structur	99.88
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	99.88
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	99.88
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	99.88
3fme_A	290	Dual specificity mitogen-activated protein kinase;	99.88
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	99.88
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	99.88
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	99.88
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	99.88
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	99.88
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	99.88
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	99.88
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	99.88
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	99.88
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	99.88
3an0_A	340	Dual specificity mitogen-activated protein kinase;	99.88
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	99.87
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	99.87
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	99.87
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	99.87
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	99.87
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	99.87
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	99.87
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	99.87
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	99.86
3aln_A	327	Dual specificity mitogen-activated protein kinase;	99.86
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	99.86
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	99.86
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	99.85
2dyl_A	318	Dual specificity mitogen-activated protein kinase	99.85
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	99.85
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.85
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	99.85
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	99.85
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	99.84
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	99.83
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.78
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	99.74
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	99.66
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	99.34
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	99.01
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	98.71
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	98.6
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	98.16
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	98.0
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	97.98
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	97.68
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	97.31
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	96.91
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	96.9
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	96.82
2pyw_A	420	Uncharacterized protein; 5-methylthioribose kinase	95.77
3jr1_A	312	Putative fructosamine-3-kinase; YP_719053.1, struc	95.51
2ppq_A	322	HSK, HK, homoserine kinase; structural genomics, M	95.05
3feg_A	379	Choline/ethanolamine kinase; non-protein kinase, c	94.73
3dxq_A	301	Choline/ethanolamine kinase family protein; NP_106	93.66
3ats_A	357	Putative uncharacterized protein; hypothetical pro	93.54
4ann_A	215	ESSB; membrane protein, membrane secretion, ESS ty	92.31
4ano_A	219	ESSB; membrane protein, membrane secretion, ESS ty	91.32
3ls8_A	614	Phosphatidylinositol 3-kinase catalytic subunit ty	87.65
2x6h_A	696	GH13170P, VPS34, phosphotidylinositol 3 kinase 59F	86.86
3f7w_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	84.13
2qg7_A	458	Ethanolamine kinase PV091845; malaria, SGC, struct	80.63

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=100.00  E-value=6.6e-35  Score=243.92  Aligned_cols=143  Identities=21%  Similarity=0.268  Sum_probs=125.8

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVY  162 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  162 (243)
                      ++|++.+.||+|+||+||+|+.+.+.+                ..+.+.+|+++|++|+|||||+++++|++++.+||||
T Consensus        32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivm  111 (311)
T 4aw0_A           32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL  111 (311)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence            679999999999999999998776532                3467899999999999999999999999999999999


Q ss_pred             eccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCc-e
Q 039406          163 EFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNT-H  233 (243)
Q Consensus       163 e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~-~  233 (243)
                      |||+||+|.+++...+  .+++..++.++.||+.||.|||.        ||+||||+.++.+||+|||+|+.+..... .
T Consensus       112 Ey~~gG~L~~~i~~~~--~l~e~~~~~~~~qi~~al~ylH~~~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~~~~~  189 (311)
T 4aw0_A          112 SYAKNGELLKYIRKIG--SFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQA  189 (311)
T ss_dssp             CCCTTEEHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECCTTTTCC
T ss_pred             ecCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCCccCCCCHHHeEEcCCCCEEEEEcCCceecCCCCCcc
Confidence            9999999999997654  49999999999999999999976        67999999999999999999998864433 2


Q ss_pred             eeeccccccC
Q 039406          234 VSTRVMGTFG  243 (243)
Q Consensus       234 ~~~~~~GT~G  243 (243)
                      ...+++||+.
T Consensus       190 ~~~~~~GTp~  199 (311)
T 4aw0_A          190 RANSFVGTAQ  199 (311)
T ss_dssp             CBCCCCSCGG
T ss_pred             cccCcccCcc
Confidence            3456799973

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=100.00  E-value=2.5e-35  Score=255.69  Aligned_cols=141  Identities=20%  Similarity=0.246  Sum_probs=124.0

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch-------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEecc
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE-------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFV  165 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~-------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~  165 (243)
                      +.|.+.+.||+|+||.||+|+++.+.+             ..+.+.+|+.+|++|+|||||+++++|.+++.+|||||||
T Consensus       151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy~  230 (423)
T 4fie_A          151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL  230 (423)
T ss_dssp             GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             HhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEEEeCC
Confidence            469999999999999999998765432             4566889999999999999999999999999999999999


Q ss_pred             CCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCceeeec
Q 039406          166 LNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNTHVSTR  237 (243)
Q Consensus       166 ~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~~~~~~  237 (243)
                      +||+|.+++...   .+++..++.|+.||+.||.|||.        |++||||+.+|.+||+|||+|+.+..... ..++
T Consensus       231 ~gG~L~~~i~~~---~l~e~~~~~~~~qil~aL~ylH~~~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~~-~~~~  306 (423)
T 4fie_A          231 EGGALTDIVTHT---RMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVP-RRKS  306 (423)
T ss_dssp             TTEEHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSTTTEEECTTCCEEECCCTTCEECCSSCC-CBCC
T ss_pred             CCCcHHHHHhcc---CCCHHHHHHHHHHHHHHHHHHHHCCeecccCCHHHEEEcCCCCEEEecCccceECCCCCc-cccc
Confidence            999999999754   39999999999999999999976        57999999999999999999998865543 3345


Q ss_pred             cccccC
Q 039406          238 VMGTFG  243 (243)
Q Consensus       238 ~~GT~G  243 (243)
                      ++||+.
T Consensus       307 ~~GTp~  312 (423)
T 4fie_A          307 LVGTPY  312 (423)
T ss_dssp             CEECTT
T ss_pred             cccCcC
Confidence            789974

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=100.00  E-value=3.2e-35  Score=249.59  Aligned_cols=144  Identities=15%  Similarity=0.231  Sum_probs=119.9

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc---------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEe
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK---------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYE  163 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~---------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e  163 (243)
                      ++|++++.||+|+||+||+|+++.+.               ...+.+.+|+.+|++|+|||||+++++|.+++.+|||||
T Consensus        24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmE  103 (350)
T 4b9d_A           24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMD  103 (350)
T ss_dssp             CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             cceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEe
Confidence            78999999999999999999876542               245778999999999999999999999999999999999


Q ss_pred             ccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCceee
Q 039406          164 FVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNTHVS  235 (243)
Q Consensus       164 ~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~~~~  235 (243)
                      ||+||+|.++|...+...+++..++.|+.||+.||.|||.        ||+||||+.+|++||+|||+|+.+..... ..
T Consensus       104 y~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~-~~  182 (350)
T 4b9d_A          104 YCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHDRKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTVE-LA  182 (350)
T ss_dssp             CCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTCEETTCCGGGEEECTTCCEEECSTTEESCCCHHHH-HH
T ss_pred             CCCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCCHHHEEECCCCCEEEcccccceeecCCcc-cc
Confidence            9999999999976665568999999999999999999976        56999999999999999999998754332 23


Q ss_pred             eccccccC
Q 039406          236 TRVMGTFG  243 (243)
Q Consensus       236 ~~~~GT~G  243 (243)
                      ++++||++
T Consensus       183 ~~~~GT~~  190 (350)
T 4b9d_A          183 RACIGTPY  190 (350)
T ss_dssp             HHHHSCCT
T ss_pred             cccCCCcc
Confidence            45788874

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=100.00  E-value=3.9e-34  Score=242.54  Aligned_cols=141  Identities=20%  Similarity=0.246  Sum_probs=123.7

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch-------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEecc
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE-------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFV  165 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~-------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~  165 (243)
                      +.|++.+.||+|+||.||+|+++.+.+             ..+.+.+|+.+|++++|||||+++++|.+++.+|||||||
T Consensus        74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~  153 (346)
T 4fih_A           74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL  153 (346)
T ss_dssp             GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred             HhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeCC
Confidence            468999999999999999998775432             3456889999999999999999999999999999999999


Q ss_pred             CCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCceeeec
Q 039406          166 LNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNTHVSTR  237 (243)
Q Consensus       166 ~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~~~~~~  237 (243)
                      +||+|.+++...   .+++..++.|+.||+.||.|||.        ||+||||+.+|++||+|||+|+.+..... ..++
T Consensus       154 ~gg~L~~~l~~~---~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~-~~~~  229 (346)
T 4fih_A          154 EGGALTDIVTHT---RMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVP-RRKS  229 (346)
T ss_dssp             TTEEHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSSSC-CBCC
T ss_pred             CCCcHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHCCcccccCCHHHEEECCCCCEEEecCcCceecCCCCC-cccc
Confidence            999999999753   49999999999999999999976        56999999999999999999998865543 3345


Q ss_pred             cccccC
Q 039406          238 VMGTFG  243 (243)
Q Consensus       238 ~~GT~G  243 (243)
                      ++||+.
T Consensus       230 ~~GTp~  235 (346)
T 4fih_A          230 LVGTPY  235 (346)
T ss_dssp             CCSCGG
T ss_pred             cccCcC
Confidence            789873

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=100.00  E-value=5.1e-33  Score=232.58  Aligned_cols=144  Identities=25%  Similarity=0.395  Sum_probs=116.8

Q ss_pred             hCCCCccceeeecCceEEEEEEecCC------------chhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEecc
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNG------------KEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFV  165 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~------------~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~  165 (243)
                      .++|.+.++||+|+||.||+|++..+            .+..+.|.+|+.+|++++|||||++++++. ++.+|||||||
T Consensus        35 ~~~l~l~~~iG~G~fG~Vy~~~~~~~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~-~~~~~iVmEy~  113 (307)
T 3omv_A           35 ASEVMLSTRIGSGSFGTVYKGKWHGDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMT-KDNLAIVTQWC  113 (307)
T ss_dssp             TTSCCEEEECCCCSSSEEEEEESSSEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEEEECC
T ss_pred             HHHeEEeeEEeeCCCcEEEEEEECCcEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEE-CCeEEEEEEcC
Confidence            36788899999999999999976432            235678999999999999999999999875 46789999999


Q ss_pred             CCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCC-ceeee
Q 039406          166 LNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVN-THVST  236 (243)
Q Consensus       166 ~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~-~~~~~  236 (243)
                      ++|+|.+++..... .+++..++.|+.||+.||.|||.        |++||||+.++++||+|||+|+...... .....
T Consensus       114 ~gGsL~~~l~~~~~-~l~~~~~~~i~~qia~gL~yLH~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~  192 (307)
T 3omv_A          114 EGSSLYKHLHVQET-KFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGSQQVE  192 (307)
T ss_dssp             SSCBHHHHHHTSCC-CCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCCSSSEEEETTEEEEECCCSSCBC-----------
T ss_pred             CCCCHHHHHhhcCC-CCCHHHHHHHHHHHHHHHHHHHHCCccCCccCHHHEEECCCCcEEEeeccCceecccCCcceeec
Confidence            99999999975543 59999999999999999999976        5699999999999999999999875433 22344


Q ss_pred             ccccccC
Q 039406          237 RVMGTFG  243 (243)
Q Consensus       237 ~~~GT~G  243 (243)
                      ..+||++
T Consensus       193 ~~~GT~~  199 (307)
T 3omv_A          193 QPTGSVL  199 (307)
T ss_dssp             -CCCCTT
T ss_pred             ccccCCC
Confidence            5688874

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=100.00  E-value=8.8e-33  Score=227.77  Aligned_cols=140  Identities=21%  Similarity=0.316  Sum_probs=109.5

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVY  162 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  162 (243)
                      ++|++.+.||+|+||.||+|+.+.+.+                ..+.+.+|+.+|++++|||||++++++.+++.+||||
T Consensus        13 g~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivm   92 (275)
T 3hyh_A           13 GNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVI   92 (275)
T ss_dssp             -CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             eCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEE
Confidence            789999999999999999998665422                3567899999999999999999999999999999999


Q ss_pred             eccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCcee
Q 039406          163 EFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNTHV  234 (243)
Q Consensus       163 e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~~~  234 (243)
                      ||| +|+|.+++..++  .+++..++.++.||+.||.|||+        ||+|||++.++++||+|||+|+...+...  
T Consensus        93 Ey~-~g~L~~~l~~~~--~l~e~~~~~~~~qi~~al~ylH~~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~~~--  167 (275)
T 3hyh_A           93 EYA-GNELFDYIVQRD--KMSEQEARRFFQQIISAVEYCHRHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMTDGNF--  167 (275)
T ss_dssp             ECC-CEEHHHHHHHSC--SCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTTEEECTTCCEEECCSSCC----------
T ss_pred             eCC-CCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCcccccCChHHeEECCCCCEEEeecCCCeecCCCCc--
Confidence            999 679999987655  49999999999999999999976        67999999999999999999998765432  


Q ss_pred             eeccccccC
Q 039406          235 STRVMGTFG  243 (243)
Q Consensus       235 ~~~~~GT~G  243 (243)
                      ..+.+||++
T Consensus       168 ~~~~~GT~~  176 (275)
T 3hyh_A          168 LKTSCGSPN  176 (275)
T ss_dssp             -------CT
T ss_pred             cCCeeECcc
Confidence            345788874

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=100.00  E-value=5.9e-33  Score=231.76  Aligned_cols=144  Identities=22%  Similarity=0.362  Sum_probs=119.6

Q ss_pred             CCCCccceeeecCceEEEEEEecCC------------------chhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNG------------------KEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRML  160 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~------------------~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~l  160 (243)
                      ++|.+.+.||+|+||.||+|++...                  ....+.|.+|+++|++|+|||||+++++|.+++.+||
T Consensus        13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l   92 (299)
T 4asz_A           13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIM   92 (299)
T ss_dssp             GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred             HHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEEE
Confidence            5788899999999999999976421                  1246789999999999999999999999999999999


Q ss_pred             EEeccCCCCHHHHhccCC-----------CCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEecc
Q 039406          161 VYEFVLNNTLVFHLHGKG-----------QPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADF  221 (243)
Q Consensus       161 v~e~~~~g~L~~~l~~~~-----------~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DF  221 (243)
                      |||||++|+|.+++...+           ...++|..++.|+.|++.||.|||.        |++||||+.++++||+||
T Consensus        93 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDlKp~NILl~~~~~~Ki~DF  172 (299)
T 4asz_A           93 VFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQHFVHRDLATRNCLVGENLLVKIGDF  172 (299)
T ss_dssp             EEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCC
T ss_pred             EEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCccCHhhEEECCCCcEEECCc
Confidence            999999999999997532           2358999999999999999999976        458999999999999999


Q ss_pred             CCceecCCCCcee-eecccccc
Q 039406          222 GLAKIASDVNTHV-STRVMGTF  242 (243)
Q Consensus       222 G~a~~~~~~~~~~-~~~~~GT~  242 (243)
                      |+|+......... ....+||+
T Consensus       173 Gla~~~~~~~~~~~~~~~~gt~  194 (299)
T 4asz_A          173 GMSRDVYSTDYYRVGGHTMLPI  194 (299)
T ss_dssp             SCHHHHTGGGCEEETTTEEECG
T ss_pred             ccceecCCCCceeecCceecCh
Confidence            9999875544322 22346765

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=99.98  E-value=2.5e-32  Score=226.77  Aligned_cols=137  Identities=22%  Similarity=0.275  Sum_probs=115.3

Q ss_pred             CccceeeecCceEEEEEEecCCch---------------hHHHHHHHHHHHHhcCCCccceEEEEEEe----CCeeEEEE
Q 039406          102 SDANLLRQDGFGYVHRGVLPNGKE---------------GEREFQAEVEIISRVHHKHLVSLVGYYTA----GSQRMLVY  162 (243)
Q Consensus       102 ~~~~~lg~G~~g~V~~~~~~~~~~---------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~----~~~~~lv~  162 (243)
                      .+.+.||+|+||.||+|++..+..               ..+.|.+|+++|++|+|||||+++++|.+    ++.+||||
T Consensus        29 ~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~lvm  108 (290)
T 3fpq_A           29 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVT  108 (290)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEEEE
T ss_pred             EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEEEE
Confidence            556789999999999998765432               45678999999999999999999999875    34689999


Q ss_pred             eccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc----------CCCcEEECC-CCcEEEeccCCceecCCCC
Q 039406          163 EFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD----------DLANILLDF-KFEAKVADFGLAKIASDVN  231 (243)
Q Consensus       163 e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~----------~~~NiLl~~-~~~~kl~DFG~a~~~~~~~  231 (243)
                      |||+||+|.+++.+.+  .+++..++.++.||+.||.|||.          ||+||||+. ++.+||+|||+|+..... 
T Consensus       109 Ey~~gg~L~~~l~~~~--~l~~~~~~~~~~qi~~aL~ylH~~~~~IiHRDlKp~NILl~~~~g~vKl~DFGla~~~~~~-  185 (290)
T 3fpq_A          109 ELMTSGTLKTYLKRFK--VMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRAS-  185 (290)
T ss_dssp             ECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHTSSSCCCCCCCCGGGEEESSTTSCEEECCTTGGGGCCTT-
T ss_pred             eCCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCCCEEecccChhheeEECCCCCEEEEeCcCCEeCCCC-
Confidence            9999999999997654  48999999999999999999985          458999984 799999999999865433 


Q ss_pred             ceeeeccccccC
Q 039406          232 THVSTRVMGTFG  243 (243)
Q Consensus       232 ~~~~~~~~GT~G  243 (243)
                        ...+++||++
T Consensus       186 --~~~~~~GTp~  195 (290)
T 3fpq_A          186 --FAKAVIGTPE  195 (290)
T ss_dssp             --SBEESCSSCC
T ss_pred             --ccCCcccCcc
Confidence              2345789974

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=99.98  E-value=5.7e-33  Score=234.68  Aligned_cols=143  Identities=20%  Similarity=0.164  Sum_probs=118.1

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch--------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccCCCCH
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE--------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTL  170 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~--------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~g~L  170 (243)
                      +.|...++||+|+||.||+|+++.+.+        ......+|+.+|++|+|||||+++++|.+++.+|||||||+||+|
T Consensus        58 ~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~~gg~L  137 (336)
T 4g3f_A           58 HWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVFRVEELVACAGLSSPRIVPLYGAVREGPWVNIFMELLEGGSL  137 (336)
T ss_dssp             TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECCCTTCBH
T ss_pred             hheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHhHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeccCCCcH
Confidence            568888999999999999999876543        112235799999999999999999999999999999999999999


Q ss_pred             HHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCC-cEEEeccCCceecCCCCce----eeec
Q 039406          171 VFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKF-EAKVADFGLAKIASDVNTH----VSTR  237 (243)
Q Consensus       171 ~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~-~~kl~DFG~a~~~~~~~~~----~~~~  237 (243)
                      .+++...+  .+++..++.|+.||+.||.|||.        ||+||||+.+| ++||+|||+|+.+......    ....
T Consensus       138 ~~~l~~~~--~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~~~~~~~~~~~  215 (336)
T 4g3f_A          138 GQLIKQMG--CLPEDRALYYLGQALEGLEYLHTRRILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLGKSLLTGDY  215 (336)
T ss_dssp             HHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHTTTEECSCCCGGGEEECTTSCCEEECCCTTCEEC------------CC
T ss_pred             HHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCceecccCHHHEEEeCCCCEEEEeeCCCCeEccCCCcccceecCCc
Confidence            99997654  49999999999999999999976        57999999987 6999999999988654321    1234


Q ss_pred             cccccC
Q 039406          238 VMGTFG  243 (243)
Q Consensus       238 ~~GT~G  243 (243)
                      ++||+.
T Consensus       216 ~~GT~~  221 (336)
T 4g3f_A          216 IPGTET  221 (336)
T ss_dssp             CCCCGG
T ss_pred             cccCcc
Confidence            678873

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=99.98  E-value=1.5e-33  Score=235.46  Aligned_cols=142  Identities=25%  Similarity=0.258  Sum_probs=114.5

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc------------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK------------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRML  160 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~------------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~l  160 (243)
                      ++|++.+.||+|+||+||+|+...+.                  .....+.+|+.+|++++|||||+++++|.+++.+||
T Consensus        24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~i  103 (304)
T 3ubd_A           24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKLYL  103 (304)
T ss_dssp             GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEETTEEEE
T ss_pred             cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEE
Confidence            57999999999999999999764321                  123468889999999999999999999999999999


Q ss_pred             EEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCc
Q 039406          161 VYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNT  232 (243)
Q Consensus       161 v~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~  232 (243)
                      |||||+||+|.+++.+.+  .+++..++.++.|++.||.|||+        ||+|||++.+|++||+|||+|+...+...
T Consensus       104 vmEy~~gg~L~~~l~~~~--~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~  181 (304)
T 3ubd_A          104 ILDFLRGGDLFTRLSKEV--MFTEEDVKFYLAELALALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEK  181 (304)
T ss_dssp             EECCCTTCEEHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCCGGGEEECTTSCEEEESSEEEEC-----C
T ss_pred             EEEcCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCCcCCCCCHHHeEEcCCCCEEecccccceeccCCCc
Confidence            999999999999997654  49999999999999999999976        56999999999999999999997654433


Q ss_pred             eeeeccccccC
Q 039406          233 HVSTRVMGTFG  243 (243)
Q Consensus       233 ~~~~~~~GT~G  243 (243)
                       ...+.+||+.
T Consensus       182 -~~~~~~GT~~  191 (304)
T 3ubd_A          182 -KAYSFCGTVE  191 (304)
T ss_dssp             -CCCSCCCCGG
T ss_pred             -cccccccCcc
Confidence             2345789873

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=99.98  E-value=2.7e-32  Score=230.63  Aligned_cols=144  Identities=24%  Similarity=0.388  Sum_probs=112.8

Q ss_pred             CCCCccceeeecCceEEEEEEecC------------------CchhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPN------------------GKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRML  160 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~------------------~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~l  160 (243)
                      ++|.+.++||+|+||.||+|+++.                  .....+.|.+|+++|++|+|||||+++++|.+.+.+||
T Consensus        41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l  120 (329)
T 4aoj_A           41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLM  120 (329)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred             HHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEE
Confidence            567788999999999999997642                  11246789999999999999999999999999999999


Q ss_pred             EEeccCCCCHHHHhccCC-------------CCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEe
Q 039406          161 VYEFVLNNTLVFHLHGKG-------------QPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVA  219 (243)
Q Consensus       161 v~e~~~~g~L~~~l~~~~-------------~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~  219 (243)
                      |||||++|+|.++++...             ...++|..++.|+.|++.||.|||.        |++||||+.++++||+
T Consensus       121 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDLKp~NILl~~~~~~Ki~  200 (329)
T 4aoj_A          121 VFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLHFVHRDLATRNCLVGQGLVVKIG  200 (329)
T ss_dssp             EEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEETTTEEEEC
T ss_pred             EEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhcCCeecccccHhhEEECCCCcEEEc
Confidence            999999999999987542             1358999999999999999999976        4589999999999999


Q ss_pred             ccCCceecCCCCc-eeeecccccc
Q 039406          220 DFGLAKIASDVNT-HVSTRVMGTF  242 (243)
Q Consensus       220 DFG~a~~~~~~~~-~~~~~~~GT~  242 (243)
                      |||+|+.+..... ...+..+||+
T Consensus       201 DFGla~~~~~~~~~~~~~~~~gt~  224 (329)
T 4aoj_A          201 DFGMSRDIYSTDYYRVGGRTMLPI  224 (329)
T ss_dssp             CCC----------------CCCCG
T ss_pred             ccccceeccCCCcceecCcccccc
Confidence            9999998754332 2333456775

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=99.97  E-value=4.6e-32  Score=226.54  Aligned_cols=133  Identities=19%  Similarity=0.290  Sum_probs=107.1

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCc--------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCC-------
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGK--------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGS-------  156 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~--------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-------  156 (243)
                      .++|++.+.||+|+||.||+|+++.+.              ...+.+.+|+.+|++|+|||||+++++|.+.+       
T Consensus         4 l~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~   83 (299)
T 4g31_A            4 LTDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQP   83 (299)
T ss_dssp             HHHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC-------
T ss_pred             chhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCccccccc
Confidence            357999999999999999999876442              24567899999999999999999999987544       


Q ss_pred             -----eeEEEEeccCCCCHHHHhccCCCC-CCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccC
Q 039406          157 -----QRMLVYEFVLNNTLVFHLHGKGQP-TMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFG  222 (243)
Q Consensus       157 -----~~~lv~e~~~~g~L~~~l~~~~~~-~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG  222 (243)
                           .+|||||||.+|+|.+++..+... ...+..++.++.|++.||.|||.        ||+||||+.++.+||+|||
T Consensus        84 ~~~~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~ylH~~~IiHRDlKp~NILl~~~~~vKl~DFG  163 (299)
T 4g31_A           84 SSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKVGDFG  163 (299)
T ss_dssp             ---CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCCC
T ss_pred             cCCCcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHCcCccccCcHHHeEECCCCcEEEccCc
Confidence                 379999999999999999765431 24566788999999999999976        5699999999999999999


Q ss_pred             CceecCCC
Q 039406          223 LAKIASDV  230 (243)
Q Consensus       223 ~a~~~~~~  230 (243)
                      +|+.+...
T Consensus       164 la~~~~~~  171 (299)
T 4g31_A          164 LVTAMDQD  171 (299)
T ss_dssp             CC------
T ss_pred             cceecCCC
Confidence            99987654

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=99.97  E-value=3.7e-32  Score=227.82  Aligned_cols=144  Identities=21%  Similarity=0.316  Sum_probs=119.0

Q ss_pred             CCCCccceeeecCceEEEEEEecCC-------------------chhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNG-------------------KEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRM  159 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~-------------------~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~  159 (243)
                      +++.+.+.||+|+||.||+|++...                   ....+.|.+|+.+|++|+|||||++++++.+++.+|
T Consensus        26 ~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~  105 (308)
T 4gt4_A           26 SAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLS  105 (308)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCE
T ss_pred             HHCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceEEEECCEEE
Confidence            4566788999999999999976321                   124578999999999999999999999999999999


Q ss_pred             EEEeccCCCCHHHHhccCC--------------CCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEE
Q 039406          160 LVYEFVLNNTLVFHLHGKG--------------QPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAK  217 (243)
Q Consensus       160 lv~e~~~~g~L~~~l~~~~--------------~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~k  217 (243)
                      ||||||++|+|.++|..+.              ...++|..++.|+.||+.||.|||.        |++||||++++++|
T Consensus       106 lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDLK~~NILl~~~~~~K  185 (308)
T 4gt4_A          106 MIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHHVVHKDLATRNVLVYDKLNVK  185 (308)
T ss_dssp             EEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEE
T ss_pred             EEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCccccceEECCCCCEE
Confidence            9999999999999996432              1358999999999999999999976        45899999999999


Q ss_pred             EeccCCceecCCCCc-eeeecccccc
Q 039406          218 VADFGLAKIASDVNT-HVSTRVMGTF  242 (243)
Q Consensus       218 l~DFG~a~~~~~~~~-~~~~~~~GT~  242 (243)
                      |+|||+|+.+..... ...+..+||+
T Consensus       186 i~DFGlar~~~~~~~~~~~~~~~gt~  211 (308)
T 4gt4_A          186 ISDLGLFREVYAADYYKLLGNSLLPI  211 (308)
T ss_dssp             ECCSCCBCGGGGGGCBCSSSSSCBCG
T ss_pred             ECCcccceeccCCCceeEecccccCC
Confidence            999999997754332 2233456775

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=99.97  E-value=6.3e-31  Score=224.12  Aligned_cols=154  Identities=23%  Similarity=0.253  Sum_probs=124.9

Q ss_pred             ccHHHHHHHhCCCCccceeeecCceEEEEEEecCCc-------------------hhHHHHHHHHHHHHhcCC-CccceE
Q 039406           89 FTYEELARATDGFSDANLLRQDGFGYVHRGVLPNGK-------------------EGEREFQAEVEIISRVHH-KHLVSL  148 (243)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~-------------------~~~~~~~~E~~~l~~l~h-p~iv~~  148 (243)
                      +...+++...++|++.+.||+|+||.||+|.+....                   ...+.|.+|+++|++++| ||||++
T Consensus        54 ~~~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l  133 (353)
T 4ase_A           54 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL  133 (353)
T ss_dssp             CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred             CCCcccEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEE
Confidence            344555556688999999999999999999765421                   235679999999999965 899999


Q ss_pred             EEEEEeC-CeeEEEEeccCCCCHHHHhccCC--------------CCCCCHHHHHHHHHHHHHhhhHhhc--------CC
Q 039406          149 VGYYTAG-SQRMLVYEFVLNNTLVFHLHGKG--------------QPTMDWPTRIKIALGSAKGLAYLHD--------DL  205 (243)
Q Consensus       149 ~~~~~~~-~~~~lv~e~~~~g~L~~~l~~~~--------------~~~l~~~~~~~i~~~i~~~l~~lH~--------~~  205 (243)
                      +++|... +.+|||||||++|+|.++|+...              ...+++..++.++.||+.||.|||.        |+
T Consensus       134 ~g~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~~iiHRDLK~  213 (353)
T 4ase_A          134 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAA  213 (353)
T ss_dssp             EEEECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSG
T ss_pred             EEEEEecCCEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhhCCeecCccCc
Confidence            9998764 57999999999999999996532              2348999999999999999999965        45


Q ss_pred             CcEEECCCCcEEEeccCCceecCCCCc-eeeecccccc
Q 039406          206 ANILLDFKFEAKVADFGLAKIASDVNT-HVSTRVMGTF  242 (243)
Q Consensus       206 ~NiLl~~~~~~kl~DFG~a~~~~~~~~-~~~~~~~GT~  242 (243)
                      +|||++.++.+||+|||+|+.+..+.. ...+..+||+
T Consensus       214 ~NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~  251 (353)
T 4ase_A          214 RNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPL  251 (353)
T ss_dssp             GGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECG
T ss_pred             cceeeCCCCCEEECcchhhhhcccCCCceeeccccccc
Confidence            899999999999999999998755433 2334567775

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=99.97  E-value=2.6e-30  Score=223.73  Aligned_cols=141  Identities=16%  Similarity=0.257  Sum_probs=117.5

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch---------------hHHHHHHHHHHHHhcCCCccceEEEEEEe------CCe
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE---------------GEREFQAEVEIISRVHHKHLVSLVGYYTA------GSQ  157 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~---------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~------~~~  157 (243)
                      ++|++++.||+|+||+||+|+++.+.+               ..+.+.+|+++|++|+|||||++++++..      .+.
T Consensus        54 ~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~~  133 (398)
T 4b99_A           54 DEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFKS  133 (398)
T ss_dssp             SSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCCC
T ss_pred             CCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCCE
Confidence            679999999999999999998765432               35678899999999999999999999764      367


Q ss_pred             eEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          158 RMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       158 ~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      +|||||||+ |+|.+++...+  .+++..++.|+.||+.||.|||.        ||+|||++.++.+||+|||+|+.+..
T Consensus       134 ~~ivmE~~~-g~L~~~i~~~~--~l~~~~~~~~~~qil~al~ylH~~~iiHRDlKP~NIl~~~~~~~Ki~DFGla~~~~~  210 (398)
T 4b99_A          134 VYVVLDLME-SDLHQIIHSSQ--PLTLEHVRYFLYQLLRGLKYMHSAQVIHRDLKPSNLLVNENCELKIGDFGMARGLCT  210 (398)
T ss_dssp             EEEEEECCS-EEHHHHHTSSS--CCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTCCEEECCCTTCBCC--
T ss_pred             EEEEEeCCC-CCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCcCcCCCcCccccccCCCCCEEEeecceeeeccc
Confidence            999999996 68999997654  59999999999999999999976        67999999999999999999998754


Q ss_pred             CC---ceeeecccccc
Q 039406          230 VN---THVSTRVMGTF  242 (243)
Q Consensus       230 ~~---~~~~~~~~GT~  242 (243)
                      ..   ....++.+||+
T Consensus       211 ~~~~~~~~~~~~~GT~  226 (398)
T 4b99_A          211 SPAEHQYFMTEYVATR  226 (398)
T ss_dssp             -----CCCCCSSCCCC
T ss_pred             CccccccccccceeCh
Confidence            32   22334578886

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=99.97  E-value=2.1e-30  Score=216.99  Aligned_cols=142  Identities=25%  Similarity=0.291  Sum_probs=111.8

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch--------hHHHHH--HHHHHHHhcCCCccceEEEEEEeCC----eeEEEEec
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE--------GEREFQ--AEVEIISRVHHKHLVSLVGYYTAGS----QRMLVYEF  164 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~--------~~~~~~--~E~~~l~~l~hp~iv~~~~~~~~~~----~~~lv~e~  164 (243)
                      ++|.+.+.||+|+||.||+|++.....        ..+.+.  .|+..+.+++|||||++++++.+++    .+||||||
T Consensus         3 r~i~L~~~iG~G~fG~Vy~~~~~g~~VAvK~l~~~~~~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~Ey   82 (303)
T 3hmm_A            3 RTIVLQESIGKGRFGEVWRGKWRGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDY   82 (303)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEETTEEEEEEEECGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEEC
T ss_pred             cEEEEEEEEeeCCCeEEEEEEECCEEEEEEEECccchhhHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEEEEecC
Confidence            457788999999999999998754321        223333  4555667889999999999998654    58999999


Q ss_pred             cCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc----------------CCCcEEECCCCcEEEeccCCceecC
Q 039406          165 VLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD----------------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       165 ~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~----------------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      |++|+|.++++..   .++|..++.++.|++.||.|||.                |++||||+.++++||+|||+|+...
T Consensus        83 ~~~gsL~~~l~~~---~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~  159 (303)
T 3hmm_A           83 HEHGSLFDYLNRY---TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHD  159 (303)
T ss_dssp             CTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEEEE
T ss_pred             CCCCcHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEeCCCCcccc
Confidence            9999999999764   38999999999999999999983                4589999999999999999999886


Q ss_pred             CCCcee---eeccccccC
Q 039406          229 DVNTHV---STRVMGTFG  243 (243)
Q Consensus       229 ~~~~~~---~~~~~GT~G  243 (243)
                      ......   ....+||++
T Consensus       160 ~~~~~~~~~~~~~~GT~~  177 (303)
T 3hmm_A          160 SATDTIDIAPNHRVGTKR  177 (303)
T ss_dssp             TTTTEESCC-----CCGG
T ss_pred             CCCCceeeeccccccccc
Confidence            544322   224578863

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=99.97  E-value=4.1e-30  Score=233.08  Aligned_cols=141  Identities=23%  Similarity=0.291  Sum_probs=119.9

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCch----------------hHHHHHH---HHHHHHhcCCCccceEEEEEEeCCee
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQA---EVEIISRVHHKHLVSLVGYYTAGSQR  158 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~---E~~~l~~l~hp~iv~~~~~~~~~~~~  158 (243)
                      .++|.+.++||+|+||.||+|+.+.+.+                ....+.+   ++.+++.++|||||+++++|.+.+.+
T Consensus       188 lddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~l  267 (689)
T 3v5w_A          188 MNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKL  267 (689)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEE
T ss_pred             hHHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECCEE
Confidence            3789999999999999999998876542                1122333   45677788999999999999999999


Q ss_pred             EEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          159 MLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       159 ~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      |||||||.||+|.++|...+  .+++..++.|+.||+.||.|||.        ||+||||+.+|++||+|||+|+.+...
T Consensus       268 ylVmEy~~GGdL~~~l~~~~--~l~E~~a~~y~~qIl~aL~yLH~~gIiHRDLKPeNILld~~G~vKL~DFGlA~~~~~~  345 (689)
T 3v5w_A          268 SFILDLMNGGDLHYHLSQHG--VFSEADMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKK  345 (689)
T ss_dssp             EEEECCCCSCBHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEEECTTSCEEECCCTTCEECSSC
T ss_pred             EEEEecCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCccccCCchHHeEEeCCCCEEecccceeeecCCC
Confidence            99999999999999997654  49999999999999999999987        679999999999999999999987654


Q ss_pred             CceeeeccccccC
Q 039406          231 NTHVSTRVMGTFG  243 (243)
Q Consensus       231 ~~~~~~~~~GT~G  243 (243)
                      .   ..+.+||++
T Consensus       346 ~---~~t~~GTp~  355 (689)
T 3v5w_A          346 K---PHASVGTHG  355 (689)
T ss_dssp             C---CCSCCSCGG
T ss_pred             C---CCCccCCcC
Confidence            3   345789974

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.96  E-value=2.6e-29  Score=226.98  Aligned_cols=142  Identities=23%  Similarity=0.344  Sum_probs=123.0

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCch-------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEec
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGKE-------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEF  164 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~-------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  164 (243)
                      .++|.+.+.||+|+||.||+|+.+.+.+             ..+.+.+|+.+|+.|+|||||+++++|.+.+.+||||||
T Consensus       156 l~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv~E~  235 (573)
T 3uto_A          156 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEF  235 (573)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred             ccccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEee
Confidence            4789999999999999999998765432             456788999999999999999999999999999999999


Q ss_pred             cCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCC--CcEEEeccCCceecCCCCcee
Q 039406          165 VLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFK--FEAKVADFGLAKIASDVNTHV  234 (243)
Q Consensus       165 ~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~--~~~kl~DFG~a~~~~~~~~~~  234 (243)
                      |+||+|.++|..... .+++..++.++.||+.||.|||.        ||+|||++.+  +.+||+|||+|+.+.....  
T Consensus       236 ~~gg~L~~~i~~~~~-~l~e~~~~~~~~qi~~al~ylH~~~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~~~~~~--  312 (573)
T 3uto_A          236 MSGGELFEKVADEHN-KMSEDEAVEYMRQVCKGLCHMHENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQS--  312 (573)
T ss_dssp             CCCCBHHHHHTCTTS-CEEHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSCCCEEECCCSSCEECCTTSE--
T ss_pred             cCCCcHHHHHHHhCC-CCCHHHHHHHHHHHHHHHHHHHHCCeeeccCChhhccccCCCCCCEEEeeccceeEccCCCc--
Confidence            999999999865433 59999999999999999999976        5699999854  8999999999999865543  


Q ss_pred             eecccccc
Q 039406          235 STRVMGTF  242 (243)
Q Consensus       235 ~~~~~GT~  242 (243)
                      ....+||+
T Consensus       313 ~~~~~GT~  320 (573)
T 3uto_A          313 VKVTTGTA  320 (573)
T ss_dssp             EEEECSSG
T ss_pred             eeeeEECc
Confidence            33467886

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=99.96  E-value=3e-29  Score=214.71  Aligned_cols=130  Identities=14%  Similarity=0.223  Sum_probs=113.6

Q ss_pred             HHHhCCCCccceeeecCceEEEEEEecCC--------------chhHHHHHHHHHHHHhc-CCCccceEEEEEEeCCeeE
Q 039406           95 ARATDGFSDANLLRQDGFGYVHRGVLPNG--------------KEGEREFQAEVEIISRV-HHKHLVSLVGYYTAGSQRM  159 (243)
Q Consensus        95 ~~~~~~~~~~~~lg~G~~g~V~~~~~~~~--------------~~~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~~~  159 (243)
                      ....+.|++.+.||+|+||.||+|+.+..              .....++.+|+++|+.+ +|||||+++++|.+.+.+|
T Consensus        17 p~l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~~~~~   96 (361)
T 4f9c_A           17 PQLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTSHPIRIAAELQCLTVAGGQDNVMGVKYCFRKNDHVV   96 (361)
T ss_dssp             GGGGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTSCHHHHHHHHHHHHHTCSBTTBCCCSEEEEETTEEE
T ss_pred             CCccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEccccCHHHHHHHHHHHHHhcCCCCCceEEEEEEECCEEE
Confidence            34568899999999999999999976421              11346788999999998 6999999999999999999


Q ss_pred             EEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCC-CcEEEeccCCceecCC
Q 039406          160 LVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFK-FEAKVADFGLAKIASD  229 (243)
Q Consensus       160 lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~-~~~kl~DFG~a~~~~~  229 (243)
                      ||||||++|+|.+++.     .+++..++.++.|++.||.|||.        ||+|||++.+ +.+||+|||+|+...+
T Consensus        97 lvmE~~~g~~L~~~~~-----~l~~~~~~~~~~qll~al~ylH~~gIiHRDiKPeNiLl~~~~~~~kl~DFGla~~~~~  170 (361)
T 4f9c_A           97 IAMPYLEHESFLDILN-----SLSFQEVREYMLNLFKALKRIHQFGIVHRDVKPSNFLYNRRLKKYALVDFGLAQGTHD  170 (361)
T ss_dssp             EEEECCCCCCHHHHHT-----TCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEETTTTEEEECCCTTCEECTT
T ss_pred             EEEeCCCcccHHHHHc-----CCCHHHHHHHHHHHHHHHHHHHHCCeEeCcCCHHHeEEeCCCCeEEECcCCCCcccCC
Confidence            9999999999999984     38999999999999999999976        6799999876 8999999999987654

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=99.95  E-value=7.2e-28  Score=211.07  Aligned_cols=149  Identities=18%  Similarity=0.209  Sum_probs=127.0

Q ss_pred             HHHHhCCCCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCe
Q 039406           94 LARATDGFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQ  157 (243)
Q Consensus        94 ~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~  157 (243)
                      +....++|.+.++||+|+||.||+|+++.+.+                ....+.+|+.+|..++|+||++++++|.+.+.
T Consensus        69 ~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~~~  148 (437)
T 4aw2_A           69 MRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQDDNN  148 (437)
T ss_dssp             HSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEECSSE
T ss_pred             ccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCCE
Confidence            33345789999999999999999999876532                11237889999999999999999999999999


Q ss_pred             eEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          158 RMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       158 ~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      +|||||||.+|+|.+++..... .+++..++.++.|++.||.|||.        |++||||+.++.+||+|||+|+.+..
T Consensus       149 ~~lV~Ey~~gg~L~~~l~~~~~-~l~e~~~~~~~~qi~~aL~~LH~~giiHrDLKp~NILl~~~g~vkL~DFGla~~~~~  227 (437)
T 4aw2_A          149 LYLVMDYYVGGDLLTLLSKFED-RLPEEMARFYLAEMVIAIDSVHQLHYVHRDIKPDNILMDMNGHIRLADFGSCLKLME  227 (437)
T ss_dssp             EEEEECCCTTCBHHHHHHTTTT-CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECCT
T ss_pred             EEEEEecCCCCcHHHHHHHccC-CCCHHHHHHHHHHHHHHHHHHHhCCeEecccCHHHeeEcCCCCEEEcchhhhhhccc
Confidence            9999999999999999976433 59999999999999999999976        56899999999999999999998876


Q ss_pred             CCceeeeccccccC
Q 039406          230 VNTHVSTRVMGTFG  243 (243)
Q Consensus       230 ~~~~~~~~~~GT~G  243 (243)
                      ......+..+||++
T Consensus       228 ~~~~~~~~~~GT~~  241 (437)
T 4aw2_A          228 DGTVQSSVAVGTPD  241 (437)
T ss_dssp             TSCEECCSCCSCGG
T ss_pred             CCCcccccccCCcC
Confidence            65545555678863

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=99.95  E-value=1.1e-27  Score=208.38  Aligned_cols=144  Identities=17%  Similarity=0.175  Sum_probs=124.2

Q ss_pred             HhCCCCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEE
Q 039406           97 ATDGFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRML  160 (243)
Q Consensus        97 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~l  160 (243)
                      ..++|.+.++||+|+||.||+|+.+.+.+                ..+.+.+|+.+|+.++||||++++++|.+.+.+||
T Consensus        67 ~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~l  146 (410)
T 3v8s_A           67 KAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDDRYLYM  146 (410)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEECSSEEEE
T ss_pred             CccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEE
Confidence            45789999999999999999998876532                12237789999999999999999999999999999


Q ss_pred             EEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCc
Q 039406          161 VYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNT  232 (243)
Q Consensus       161 v~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~  232 (243)
                      |||||+||+|.+++...   .+++..++.++.|++.||.|||.        ||+|||++.++.+||+|||+|+.+.....
T Consensus       147 V~E~~~gg~L~~~l~~~---~~~e~~~~~~~~qi~~aL~~LH~~givHrDLKp~NILl~~~g~ikL~DFG~a~~~~~~~~  223 (410)
T 3v8s_A          147 VMEYMPGGDLVNLMSNY---DVPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGM  223 (410)
T ss_dssp             EECCCTTEEHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECCTTSE
T ss_pred             EEeCCCCCcHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeeECCCCCEEEeccceeEeeccCCc
Confidence            99999999999998754   38999999999999999999976        56899999999999999999998876554


Q ss_pred             eeeeccccccC
Q 039406          233 HVSTRVMGTFG  243 (243)
Q Consensus       233 ~~~~~~~GT~G  243 (243)
                      ....+.+||++
T Consensus       224 ~~~~~~~gt~~  234 (410)
T 3v8s_A          224 VRCDTAVGTPD  234 (410)
T ss_dssp             EECCSCCSCGG
T ss_pred             ccccCCcCCcc
Confidence            44446678763

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=99.94  E-value=1.8e-27  Score=207.05  Aligned_cols=150  Identities=19%  Similarity=0.166  Sum_probs=126.5

Q ss_pred             HHHHHhCCCCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCC
Q 039406           93 ELARATDGFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGS  156 (243)
Q Consensus        93 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~  156 (243)
                      ++....++|.+.+.||+|+||.||+++.+.+.+                ..+.+.+|+.+|..++|+||++++++|.+.+
T Consensus        55 ~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~~  134 (412)
T 2vd5_A           55 EVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQDEN  134 (412)
T ss_dssp             HHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEEECSS
T ss_pred             hccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCC
Confidence            334446889999999999999999998865432                1234778999999999999999999999999


Q ss_pred             eeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          157 QRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       157 ~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      .+|||||||.+|+|.+++...+. .+++..++.++.||+.||.|||.        ||+|||++.++++||+|||+|+.+.
T Consensus       135 ~~~lVmE~~~gg~L~~~l~~~~~-~l~~~~~~~~~~qi~~aL~~LH~~giiHrDLKp~NILld~~g~vkL~DFGla~~~~  213 (412)
T 2vd5_A          135 YLYLVMEYYVGGDLLTLLSKFGE-RIPAEMARFYLAEIVMAIDSVHRLGYVHRDIKPDNILLDRCGHIRLADFGSCLKLR  213 (412)
T ss_dssp             EEEEEECCCCSCBHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECC
T ss_pred             EEEEEEcCCCCCcHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHHHCCeeecccCHHHeeecCCCCEEEeechhheecc
Confidence            99999999999999999976432 48999999999999999999976        5689999999999999999999887


Q ss_pred             CCCceeeeccccccC
Q 039406          229 DVNTHVSTRVMGTFG  243 (243)
Q Consensus       229 ~~~~~~~~~~~GT~G  243 (243)
                      ..........+||++
T Consensus       214 ~~~~~~~~~~~Gt~~  228 (412)
T 2vd5_A          214 ADGTVRSLVAVGTPD  228 (412)
T ss_dssp             TTSCEECSSCCSCGG
T ss_pred             CCCccccceeccccC
Confidence            655444445678763

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=99.94  E-value=3.7e-27  Score=204.47  Aligned_cols=142  Identities=23%  Similarity=0.251  Sum_probs=110.3

Q ss_pred             CCCCcc-ceeeecCceEEEEEEecCCch--------hHHHHHHHHHHHHh-cCCCccceEEEEEEe----CCeeEEEEec
Q 039406           99 DGFSDA-NLLRQDGFGYVHRGVLPNGKE--------GEREFQAEVEIISR-VHHKHLVSLVGYYTA----GSQRMLVYEF  164 (243)
Q Consensus        99 ~~~~~~-~~lg~G~~g~V~~~~~~~~~~--------~~~~~~~E~~~l~~-l~hp~iv~~~~~~~~----~~~~~lv~e~  164 (243)
                      ++|.+. ++||+|+||.||+|++..+.+        ....+.+|+.++.+ ++|+||++++++|..    .+.+||||||
T Consensus        61 ~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~~~~lv~E~  140 (400)
T 1nxk_A           61 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDCPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMEC  140 (400)
T ss_dssp             GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECSHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEEEC
T ss_pred             ccceeccceeeeccCeEEEEEEECCCCCEEEEEEeCcchhHHHHHHHHHHhcCCCCcceEeEEEeecccCCcEEEEEEEe
Confidence            667765 789999999999998876543        24567889998755 589999999999876    5679999999


Q ss_pred             cCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECC---CCcEEEeccCCceecCCCCce
Q 039406          165 VLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDF---KFEAKVADFGLAKIASDVNTH  233 (243)
Q Consensus       165 ~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~---~~~~kl~DFG~a~~~~~~~~~  233 (243)
                      |++|+|.+++.......+++..++.++.||+.||.|||.        |++|||++.   ++.+||+|||+++....... 
T Consensus       141 ~~gg~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~~~~kl~DFG~a~~~~~~~~-  219 (400)
T 1nxk_A          141 LDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNS-  219 (400)
T ss_dssp             CCSEEHHHHHHCC---CCBHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSTTCCEEECCCTTCEECC-----
T ss_pred             CCCCcHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCCccccCcCcceEEEecCCCCccEEEEecccccccCCCCc-
Confidence            999999999987655569999999999999999999976        568999987   78999999999998754332 


Q ss_pred             eeecccccc
Q 039406          234 VSTRVMGTF  242 (243)
Q Consensus       234 ~~~~~~GT~  242 (243)
                       ....+||+
T Consensus       220 -~~~~~gt~  227 (400)
T 1nxk_A          220 -LTTPCYTP  227 (400)
T ss_dssp             --------C
T ss_pred             -cccCCCCC
Confidence             22345654

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=99.94  E-value=4.1e-26  Score=190.19  Aligned_cols=141  Identities=18%  Similarity=0.262  Sum_probs=121.0

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCc-------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEec
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGK-------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEF  164 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~-------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  164 (243)
                      .++|...+.||+|+||.||+|.+..+.             ...+.+.+|+.+|++++||||+++++++...+.+|+||||
T Consensus        19 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~   98 (297)
T 3fxz_A           19 KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEY   98 (297)
T ss_dssp             GGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             hhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhcCCCCCCCeEeEEEEECCEEEEEEEC
Confidence            367999999999999999999865432             1456788999999999999999999999999999999999


Q ss_pred             cCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCceeee
Q 039406          165 VLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNTHVST  236 (243)
Q Consensus       165 ~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~~~~~  236 (243)
                      |++++|.+++...   .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++.+...... ..
T Consensus        99 ~~~~~L~~~~~~~---~~~~~~~~~~~~qi~~~l~~lH~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~-~~  174 (297)
T 3fxz_A           99 LAGGSLTDVVTET---CMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSK-RS  174 (297)
T ss_dssp             CTTCBHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSTTCC-BC
T ss_pred             CCCCCHHHHHhhc---CCCHHHHHHHHHHHHHHHHHHHhCCceeCCCCHHHEEECCCCCEEEeeCCCceecCCcccc-cC
Confidence            9999999999764   38999999999999999999986        568999999999999999999987654432 22


Q ss_pred             cccccc
Q 039406          237 RVMGTF  242 (243)
Q Consensus       237 ~~~GT~  242 (243)
                      ..+||+
T Consensus       175 ~~~gt~  180 (297)
T 3fxz_A          175 TMVGTP  180 (297)
T ss_dssp             CCCSCG
T ss_pred             CccCCc
Confidence            345654

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=99.94  E-value=1.8e-26  Score=195.09  Aligned_cols=141  Identities=18%  Similarity=0.206  Sum_probs=121.3

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCc---------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEE
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGK---------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVY  162 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~---------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  162 (243)
                      .++|.+.+.||+|+||.||+|++..+.               ...+.+.+|+++|+.++||||+++++++.+.+.+|+||
T Consensus        14 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~   93 (328)
T 3fe3_A           14 IGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLIM   93 (328)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             cCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEE
Confidence            478999999999999999999865432               24567889999999999999999999999999999999


Q ss_pred             eccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCcee
Q 039406          163 EFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNTHV  234 (243)
Q Consensus       163 e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~~~  234 (243)
                      |||++++|.+++...+  .+++..++.++.|++.||.|||.        +|+|||++.++.+||+|||+++.+.....  
T Consensus        94 e~~~~~~L~~~l~~~~--~l~~~~~~~~~~qi~~al~~lH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~--  169 (328)
T 3fe3_A           94 EYASGGEVFDYLVAHG--RMKEKEARSKFRQIVSAVQYCHQKRIVHRDLKAENLLLDADMNIKIADFGFSNEFTVGGK--  169 (328)
T ss_dssp             CCCTTCBHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECSTTCCGGGSSSCG--
T ss_pred             ECCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCEeccCCCHHHEEEcCCCCEEEeeccCceecCCCCc--
Confidence            9999999999987654  48999999999999999999976        56899999999999999999987754432  


Q ss_pred             eecccccc
Q 039406          235 STRVMGTF  242 (243)
Q Consensus       235 ~~~~~GT~  242 (243)
                      ....+||+
T Consensus       170 ~~~~~gt~  177 (328)
T 3fe3_A          170 LDAFCGAP  177 (328)
T ss_dssp             GGTTSSSG
T ss_pred             cccccCCc
Confidence            23356664

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=99.94  E-value=3e-26  Score=191.70  Aligned_cols=131  Identities=24%  Similarity=0.409  Sum_probs=116.7

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc-------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEecc
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK-------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFV  165 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~-------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~  165 (243)
                      ++|...++||+|+||.||+|.+..+.             ...+.+.+|+++|++++|+||+++++++.+++..++||||+
T Consensus        10 ~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~   89 (310)
T 3s95_A           10 SDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEYI   89 (310)
T ss_dssp             GGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             hHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeEEEEEec
Confidence            67899999999999999999876432             25677899999999999999999999999999999999999


Q ss_pred             CCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          166 LNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       166 ~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      ++++|.+++..... .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++.+...
T Consensus        90 ~~~~L~~~l~~~~~-~~~~~~~~~i~~qi~~al~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~  161 (310)
T 3s95_A           90 KGGTLRGIIKSMDS-QYPWSQRVSFAKDIASGMAYLHSMNIIHRDLNSHNCLVRENKNVVVADFGLARLMVDE  161 (310)
T ss_dssp             TTCBHHHHHHHCCT-TSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEECTTSCEEECCCTTCEECC--
T ss_pred             CCCcHHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHHhCCccCCCCCcCeEEECCCCCEEEeecccceecccc
Confidence            99999999986443 58999999999999999999986        569999999999999999999987543

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=99.94  E-value=1.6e-26  Score=192.25  Aligned_cols=143  Identities=25%  Similarity=0.324  Sum_probs=116.4

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCc----------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEE
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGK----------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLV  161 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~----------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv  161 (243)
                      .++|.+.+.||+|+||.||+|++..+.                ...+.+.+|+.++++++||||+++++++.+.+.+|+|
T Consensus        10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv   89 (294)
T 4eqm_A           10 NERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLV   89 (294)
T ss_dssp             ETTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSEEEEE
T ss_pred             hccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCeEEEE
Confidence            367999999999999999999755432                2457789999999999999999999999999999999


Q ss_pred             EeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCce
Q 039406          162 YEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNTH  233 (243)
Q Consensus       162 ~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~~  233 (243)
                      |||+++++|.+++...+  .+++..++.++.|++.||.|||.        +|+|||++.++.+||+|||+++.+......
T Consensus        90 ~e~~~g~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~  167 (294)
T 4eqm_A           90 MEYIEGPTLSEYIESHG--PLSVDTAINFTNQILDGIKHAHDMRIVHRDIKPQNILIDSNKTLKIFDFGIAKALSETSLT  167 (294)
T ss_dssp             EECCCSCBHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCSSSTTC------
T ss_pred             EeCCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEEeCCCcccccccccc
Confidence            99999999999997654  48999999999999999999986        568999999999999999999887654433


Q ss_pred             eeecccccc
Q 039406          234 VSTRVMGTF  242 (243)
Q Consensus       234 ~~~~~~GT~  242 (243)
                      .....+||+
T Consensus       168 ~~~~~~gt~  176 (294)
T 4eqm_A          168 QTNHVLGTV  176 (294)
T ss_dssp             -------CC
T ss_pred             ccCccccCc
Confidence            333455664

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=99.94  E-value=2.1e-26  Score=195.40  Aligned_cols=141  Identities=23%  Similarity=0.269  Sum_probs=120.5

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVY  162 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  162 (243)
                      ++|.+.+.||+|+||.||+|+.+.+.+                ....+.+|+.+|+.++||||+++++++.+.+.+|+||
T Consensus         5 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~lv~   84 (337)
T 1o6l_A            5 NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVM   84 (337)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             HHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCEEEEEE
Confidence            689999999999999999998765432                3456789999999999999999999999999999999


Q ss_pred             eccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCcee
Q 039406          163 EFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNTHV  234 (243)
Q Consensus       163 e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~~~  234 (243)
                      |||.+|+|.+++...+  .+++..++.++.||+.||.|||.        ||+|||++.++.+||+|||+|+....... .
T Consensus        85 E~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~-~  161 (337)
T 1o6l_A           85 EYANGGELFFHLSRER--VFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGA-T  161 (337)
T ss_dssp             ECCTTCBHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCCTTC-C
T ss_pred             eCCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCeecCcCCHHHEEECCCCCEEEeeccchhhcccCCC-c
Confidence            9999999999987544  48999999999999999999986        56899999999999999999987543332 2


Q ss_pred             eecccccc
Q 039406          235 STRVMGTF  242 (243)
Q Consensus       235 ~~~~~GT~  242 (243)
                      ....+||+
T Consensus       162 ~~~~~gt~  169 (337)
T 1o6l_A          162 MKTFCGTP  169 (337)
T ss_dssp             BCCCEECG
T ss_pred             ccccccCh
Confidence            23456765

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=99.94  E-value=2e-26  Score=196.78  Aligned_cols=142  Identities=27%  Similarity=0.354  Sum_probs=117.0

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhc-CCCccceEEEEEEeCCeeEE
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRV-HHKHLVSLVGYYTAGSQRML  160 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~~~l  160 (243)
                      .++|.+.+.||+|+||.||+|+.+.+.+                ..+.+.+|+.+|+.+ +||||+++++++.+.+.+||
T Consensus        22 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~l  101 (353)
T 3txo_A           22 IDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRLFF  101 (353)
T ss_dssp             -CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred             hhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEEEE
Confidence            4789999999999999999998776432                345578899999988 79999999999999999999


Q ss_pred             EEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCc
Q 039406          161 VYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNT  232 (243)
Q Consensus       161 v~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~  232 (243)
                      |||||.+|+|.+++...+  .+++..++.++.||+.||.|||.        ||+||||+.++.+||+|||+|+.......
T Consensus       102 v~E~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NILl~~~g~ikL~DFG~a~~~~~~~~  179 (353)
T 3txo_A          102 VMEFVNGGDLMFHIQKSR--RFDEARARFYAAEIISALMFLHDKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGICNGV  179 (353)
T ss_dssp             EEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCC---
T ss_pred             EEeCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCCcccCCCHHHEEECCCCCEEEccccceeecccCCc
Confidence            999999999999997654  49999999999999999999986        56899999999999999999986543332


Q ss_pred             eeeecccccc
Q 039406          233 HVSTRVMGTF  242 (243)
Q Consensus       233 ~~~~~~~GT~  242 (243)
                       .....+||+
T Consensus       180 -~~~~~~gt~  188 (353)
T 3txo_A          180 -TTATFCGTP  188 (353)
T ss_dssp             -------CCG
T ss_pred             -cccccCCCc
Confidence             233467775

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=99.94  E-value=2.4e-26  Score=198.27  Aligned_cols=140  Identities=24%  Similarity=0.296  Sum_probs=121.8

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVY  162 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  162 (243)
                      ++|.+.+.||+|+||.||++....+.+                ..+.+.+|+.+|+.++|||||+++++|.+.+.+|+||
T Consensus        15 ~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lv~   94 (384)
T 4fr4_A           15 DHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEEDMFMVV   94 (384)
T ss_dssp             GGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             HHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEE
Confidence            789999999999999999998766532                3467889999999999999999999999999999999


Q ss_pred             eccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCcee
Q 039406          163 EFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNTHV  234 (243)
Q Consensus       163 e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~~~  234 (243)
                      |||.+|+|.+++....  .+++..++.++.|++.||.|||.        +++||||+.++.+||+|||+|+.+.....  
T Consensus        95 e~~~gg~L~~~l~~~~--~l~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~--  170 (384)
T 4fr4_A           95 DLLLGGDLRYHLQQNV--HFKEETVKLFICELVMALDYLQNQRIIHRDMKPDNILLDEHGHVHITDFNIAAMLPRETQ--  170 (384)
T ss_dssp             CCCTTEEHHHHHHTTC--CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECCTTCC--
T ss_pred             ecCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCceeccCcHHHeEECCCCCEEEeccceeeeccCCCc--
Confidence            9999999999997654  49999999999999999999986        56899999999999999999998754432  


Q ss_pred             eecccccc
Q 039406          235 STRVMGTF  242 (243)
Q Consensus       235 ~~~~~GT~  242 (243)
                      ....+||+
T Consensus       171 ~~~~~gt~  178 (384)
T 4fr4_A          171 ITTMAGTK  178 (384)
T ss_dssp             BCCCCSCG
T ss_pred             eeccCCCc
Confidence            23456765

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=99.94  E-value=2.9e-26  Score=193.01  Aligned_cols=157  Identities=48%  Similarity=0.799  Sum_probs=133.2

Q ss_pred             CccccHHHHHHHhCCCCccceeeecCceEEEEEEecCCch-------------hHHHHHHHHHHHHhcCCCccceEEEEE
Q 039406           86 KSTFTYEELARATDGFSDANLLRQDGFGYVHRGVLPNGKE-------------GEREFQAEVEIISRVHHKHLVSLVGYY  152 (243)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~-------------~~~~~~~E~~~l~~l~hp~iv~~~~~~  152 (243)
                      ...+++.++....++|...+.||+|+||.||+|....+..             ....+.+|+++|+.++|+||+++++++
T Consensus        17 ~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~   96 (326)
T 3uim_A           17 LKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFC   96 (326)
T ss_dssp             CEECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCCCEEE
T ss_pred             cceecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccceEEEE
Confidence            3467889999999999999999999999999997654321             223688999999999999999999999


Q ss_pred             EeCCeeEEEEeccCCCCHHHHhccCCC--CCCCHHHHHHHHHHHHHhhhHhhcC-----------CCcEEECCCCcEEEe
Q 039406          153 TAGSQRMLVYEFVLNNTLVFHLHGKGQ--PTMDWPTRIKIALGSAKGLAYLHDD-----------LANILLDFKFEAKVA  219 (243)
Q Consensus       153 ~~~~~~~lv~e~~~~g~L~~~l~~~~~--~~l~~~~~~~i~~~i~~~l~~lH~~-----------~~NiLl~~~~~~kl~  219 (243)
                      .+.+..++|||||.+|+|.+++.....  ..+++..++.++.|++.||.|||..           ++|||++.++.+||+
T Consensus        97 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~~~~~~kl~  176 (326)
T 3uim_A           97 MTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVG  176 (326)
T ss_dssp             CCSSCCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEECTTCCEEEC
T ss_pred             ecCCceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEECCCCCEEec
Confidence            999999999999999999999976532  3489999999999999999999863           489999999999999


Q ss_pred             ccCCceecCCCCceeeecccccc
Q 039406          220 DFGLAKIASDVNTHVSTRVMGTF  242 (243)
Q Consensus       220 DFG~a~~~~~~~~~~~~~~~GT~  242 (243)
                      |||+++.+............||+
T Consensus       177 Dfg~~~~~~~~~~~~~~~~~gt~  199 (326)
T 3uim_A          177 DFGLAKLMDYKDTHVTTAVRGTI  199 (326)
T ss_dssp             CCSSCEECCSSSSCEECCCCSCG
T ss_pred             cCccccccCcccccccccccCCc
Confidence            99999988655544444455665

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=99.94  E-value=2.4e-26  Score=198.99  Aligned_cols=142  Identities=22%  Similarity=0.312  Sum_probs=120.1

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhc-CCCccceEEEEEEeCCeeEE
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRV-HHKHLVSLVGYYTAGSQRML  160 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~~~l  160 (243)
                      .++|.+.++||+|+||.||+|+.+.+.+                ..+.+.+|..+|.++ +||||++++++|.+.+.+||
T Consensus        51 ~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~l  130 (396)
T 4dc2_A           51 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFF  130 (396)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEE
T ss_pred             hhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCEEEE
Confidence            3689999999999999999998765432                234578899999887 89999999999999999999


Q ss_pred             EEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCc
Q 039406          161 VYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNT  232 (243)
Q Consensus       161 v~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~  232 (243)
                      |||||.+|+|.+++...+  .+++..++.++.||+.||.|||.        ||+||||+.++.+||+|||+|+.......
T Consensus       131 V~E~~~gg~L~~~l~~~~--~l~~~~~~~~~~qi~~aL~~LH~~givHrDLKp~NILl~~~g~ikL~DFGla~~~~~~~~  208 (396)
T 4dc2_A          131 VIEYVNGGDLMFHMQRQR--KLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGD  208 (396)
T ss_dssp             EEECCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTC
T ss_pred             EEEcCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCEEeccCCHHHEEECCCCCEEEeecceeeecccCCC
Confidence            999999999999987654  49999999999999999999986        56899999999999999999987433322


Q ss_pred             eeeecccccc
Q 039406          233 HVSTRVMGTF  242 (243)
Q Consensus       233 ~~~~~~~GT~  242 (243)
                       .....+||+
T Consensus       209 -~~~~~~gt~  217 (396)
T 4dc2_A          209 -TTSTFCGTP  217 (396)
T ss_dssp             -CBCCCCBCG
T ss_pred             -ccccccCCc
Confidence             234567776

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=99.94  E-value=7e-26  Score=190.76  Aligned_cols=138  Identities=25%  Similarity=0.324  Sum_probs=120.0

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVY  162 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  162 (243)
                      ++|.+.+.||+|+||.||+|+.+.+.+                ..+.+.+|+.+|+.++||||+++++++.+.+.+|+||
T Consensus         6 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv~   85 (318)
T 1fot_A            6 QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMIM   85 (318)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEEE
T ss_pred             HHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEEEEEE
Confidence            679999999999999999998765432                3456788999999999999999999999999999999


Q ss_pred             eccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCcee
Q 039406          163 EFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNTHV  234 (243)
Q Consensus       163 e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~~~  234 (243)
                      |||++|+|.+++....  .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++......   
T Consensus        86 e~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~~kL~Dfg~a~~~~~~~---  160 (318)
T 1fot_A           86 DYIEGGELFSLLRKSQ--RFPNPVAKFYAAEVCLALEYLHSKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDVT---  160 (318)
T ss_dssp             CCCCSCBHHHHHHHTS--SCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECTTSCEEECCCSSCEECSSCB---
T ss_pred             eCCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCccccCCChheEEEcCCCCEEEeecCcceecCCcc---
Confidence            9999999999997654  48999999999999999999987        5689999999999999999999875432   


Q ss_pred             eecccccc
Q 039406          235 STRVMGTF  242 (243)
Q Consensus       235 ~~~~~GT~  242 (243)
                       ...+||+
T Consensus       161 -~~~~gt~  167 (318)
T 1fot_A          161 -YTLCGTP  167 (318)
T ss_dssp             -CCCCSCT
T ss_pred             -ccccCCc
Confidence             2356665

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=99.93  E-value=1.4e-25  Score=189.13  Aligned_cols=142  Identities=17%  Similarity=0.277  Sum_probs=121.1

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCc------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEecc
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGK------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFV  165 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~  165 (243)
                      .++|.+.+.||+|+||.||+|....+.            .....+.+|+.+|+.++||||+++++++.+.+.+|+|||||
T Consensus         4 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~~   83 (321)
T 1tki_A            4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEISILNIARHRNILHLHESFESMEELVMIFEFI   83 (321)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCTHHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred             hhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecCcccHHHHHHHHHHHHhCCCCCCCeEeEEEecCCEEEEEEEeC
Confidence            478999999999999999999876543            24566889999999999999999999999999999999999


Q ss_pred             CCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECC--CCcEEEeccCCceecCCCCceee
Q 039406          166 LNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDF--KFEAKVADFGLAKIASDVNTHVS  235 (243)
Q Consensus       166 ~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~--~~~~kl~DFG~a~~~~~~~~~~~  235 (243)
                      ++++|.+++..... .+++..++.++.|++.||.|||.        +|+|||++.  ++.+||+|||+++.+.....  .
T Consensus        84 ~g~~L~~~l~~~~~-~~~~~~~~~i~~qi~~al~~lH~~givH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~~~~~--~  160 (321)
T 1tki_A           84 SGLDIFERINTSAF-ELNEREIVSYVHQVCEALQFLHSHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDN--F  160 (321)
T ss_dssp             CCCBHHHHHTSSSC-CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTTCE--E
T ss_pred             CCCCHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHHHCCCCcCCCCHHHEEEccCCCCCEEEEECCCCeECCCCCc--c
Confidence            99999999975433 58999999999999999999986        568999987  78999999999998765432  2


Q ss_pred             ecccccc
Q 039406          236 TRVMGTF  242 (243)
Q Consensus       236 ~~~~GT~  242 (243)
                      ...+||+
T Consensus       161 ~~~~gt~  167 (321)
T 1tki_A          161 RLLFTAP  167 (321)
T ss_dssp             EEEESCG
T ss_pred             ccccCCh
Confidence            2345554

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=99.93  E-value=5.6e-26  Score=193.43  Aligned_cols=144  Identities=23%  Similarity=0.316  Sum_probs=120.6

Q ss_pred             HHhCCCCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhc-CCCccceEEEEEEeCCee
Q 039406           96 RATDGFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRV-HHKHLVSLVGYYTAGSQR  158 (243)
Q Consensus        96 ~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~~  158 (243)
                      ...++|.+.+.||+|+||.||+|+.+.+.+                ..+.+.+|..+|..+ +||||+++++++.+.+.+
T Consensus        14 ~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~~   93 (345)
T 1xjd_A           14 LKIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENL   93 (345)
T ss_dssp             --CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEE
T ss_pred             CChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCEE
Confidence            345889999999999999999998775432                245677899999887 899999999999999999


Q ss_pred             EEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          159 MLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       159 ~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      |+|||||.+|+|.+++...+  .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+|+.....
T Consensus        94 ~lv~E~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~  171 (345)
T 1xjd_A           94 FFVMEYLNGGDLMYHIQSCH--KFDLSRATFYAAEIILGLQFLHSKGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLG  171 (345)
T ss_dssp             EEEEECCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCT
T ss_pred             EEEEeCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCChhhEEECCCCCEEEeEChhhhhcccC
Confidence            99999999999999997644  48999999999999999999986        568999999999999999999875433


Q ss_pred             Cceeeecccccc
Q 039406          231 NTHVSTRVMGTF  242 (243)
Q Consensus       231 ~~~~~~~~~GT~  242 (243)
                      .. .....+||+
T Consensus       172 ~~-~~~~~~gt~  182 (345)
T 1xjd_A          172 DA-KTNTFCGTP  182 (345)
T ss_dssp             TC-CBCCCCSCG
T ss_pred             CC-cccCCCCCc
Confidence            22 233466775

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=99.93  E-value=1.1e-25  Score=192.83  Aligned_cols=141  Identities=25%  Similarity=0.294  Sum_probs=120.9

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCch-------------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCee
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGKE-------------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQR  158 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~-------------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~  158 (243)
                      .+.|.+.+.||+|+||.||+|+.+.+..                   ..+.+.+|+.+|++++||||+++++++.+.+.+
T Consensus        11 ~~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~   90 (361)
T 2yab_A           11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRTDV   90 (361)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEE
T ss_pred             hhceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCCEE
Confidence            4779999999999999999998764321                   246789999999999999999999999999999


Q ss_pred             EEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCC----cEEEeccCCcee
Q 039406          159 MLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKF----EAKVADFGLAKI  226 (243)
Q Consensus       159 ~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~----~~kl~DFG~a~~  226 (243)
                      |+|||||.+|+|.+++...+  .+++..++.++.||+.||.|||.        +|+|||++.++    .+||+|||+++.
T Consensus        91 ~lv~e~~~gg~L~~~l~~~~--~l~~~~~~~i~~qi~~aL~~LH~~givHrDlkp~NIll~~~~~~~~~vkl~DFG~a~~  168 (361)
T 2yab_A           91 VLILELVSGGELFDFLAQKE--SLSEEEATSFIKQILDGVNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHE  168 (361)
T ss_dssp             EEEEECCCSCBHHHHHTTCS--CCBHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCTTSSSCCEEECCCSSCEE
T ss_pred             EEEEEcCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEeCCCCCccCEEEEecCCceE
Confidence            99999999999999997544  59999999999999999999986        56899998776    799999999998


Q ss_pred             cCCCCceeeecccccc
Q 039406          227 ASDVNTHVSTRVMGTF  242 (243)
Q Consensus       227 ~~~~~~~~~~~~~GT~  242 (243)
                      +.....  ....+||+
T Consensus       169 ~~~~~~--~~~~~gt~  182 (361)
T 2yab_A          169 IEDGVE--FKNIFGTP  182 (361)
T ss_dssp             CCTTCC--CCCCCSCG
T ss_pred             cCCCCc--cccCCCCc
Confidence            765432  23356665

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=99.93  E-value=6.6e-26  Score=192.97  Aligned_cols=141  Identities=22%  Similarity=0.317  Sum_probs=119.8

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhc-CCCccceEEEEEEeCCeeEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRV-HHKHLVSLVGYYTAGSQRMLV  161 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~~~lv  161 (243)
                      ++|.+.+.||+|+||.||+|+.+.+.+                ..+.+.+|+.+|+++ +||||+++++++.+.+.+|+|
T Consensus         9 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~lv   88 (345)
T 3a8x_A            9 QDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFV   88 (345)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred             hheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEEEEE
Confidence            679999999999999999998765421                345678899999988 899999999999999999999


Q ss_pred             EeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCce
Q 039406          162 YEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNTH  233 (243)
Q Consensus       162 ~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~~  233 (243)
                      ||||.+|+|.+++...+  .+++..++.++.|++.||.|||.        ||+|||++.++++||+|||+|+....... 
T Consensus        89 ~e~~~gg~L~~~l~~~~--~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~~kL~DFG~a~~~~~~~~-  165 (345)
T 3a8x_A           89 IEYVNGGDLMFHMQRQR--KLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGD-  165 (345)
T ss_dssp             ECCCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCGGGCBCSCCTTC-
T ss_pred             EeCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCceecCCCHHHEEECCCCCEEEEeccccccccCCCC-
Confidence            99999999999987544  48999999999999999999986        56899999999999999999987543322 


Q ss_pred             eeecccccc
Q 039406          234 VSTRVMGTF  242 (243)
Q Consensus       234 ~~~~~~GT~  242 (243)
                      .....+||+
T Consensus       166 ~~~~~~gt~  174 (345)
T 3a8x_A          166 TTSTFCGTP  174 (345)
T ss_dssp             CBCCCCSCG
T ss_pred             cccccCCCc
Confidence            233456765

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=99.93  E-value=3.6e-26  Score=196.57  Aligned_cols=141  Identities=25%  Similarity=0.344  Sum_probs=112.0

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHH-HHhcCCCccceEEEEEEeCCeeEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEI-ISRVHHKHLVSLVGYYTAGSQRMLV  161 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~-l~~l~hp~iv~~~~~~~~~~~~~lv  161 (243)
                      ++|.+.+.||+|+||.||+|+.+.+.+                ....+.+|..+ ++.++||||+++++++.+.+.+|+|
T Consensus        38 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~~lv  117 (373)
T 2r5t_A           38 SDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFV  117 (373)
T ss_dssp             GGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCEEEEE
Confidence            689999999999999999998765432                23445667666 5678999999999999999999999


Q ss_pred             EeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCce
Q 039406          162 YEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNTH  233 (243)
Q Consensus       162 ~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~~  233 (243)
                      ||||.||+|.+++...+  .+++..++.++.||+.||.|||.        |++|||++.+|++||+|||+++....... 
T Consensus       118 ~E~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIll~~~g~ikL~DFG~a~~~~~~~~-  194 (373)
T 2r5t_A          118 LDYINGGELFYHLQRER--CFLEPRARFYAAEIASALGYLHSLNIVYRDLKPENILLDSQGHIVLTDFGLCKENIEHNS-  194 (373)
T ss_dssp             EECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCCBCGGGBCCCC-
T ss_pred             EeCCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCceecCCCHHHEEECCCCCEEEeeCccccccccCCC-
Confidence            99999999999987644  48899999999999999999986        56899999999999999999987543322 


Q ss_pred             eeecccccc
Q 039406          234 VSTRVMGTF  242 (243)
Q Consensus       234 ~~~~~~GT~  242 (243)
                      .....+||+
T Consensus       195 ~~~~~~gt~  203 (373)
T 2r5t_A          195 TTSTFCGTP  203 (373)
T ss_dssp             CCCSBSCCC
T ss_pred             ccccccCCc
Confidence            233467776

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=99.93  E-value=8.4e-26  Score=192.67  Aligned_cols=138  Identities=25%  Similarity=0.278  Sum_probs=120.1

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVY  162 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  162 (243)
                      ++|.+.+.||+|+||.||+|+...+.+                ..+.+.+|+.+|+.++||||+++++++.+.+.+|+||
T Consensus        41 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  120 (350)
T 1rdq_E           41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVM  120 (350)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             HHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEEE
Confidence            679999999999999999998765432                3456888999999999999999999999999999999


Q ss_pred             eccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCcee
Q 039406          163 EFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNTHV  234 (243)
Q Consensus       163 e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~~~  234 (243)
                      |||++|+|.+++...+  .+++..++.++.|++.||.|||.        +|+|||++.++.+||+|||+++.+....   
T Consensus       121 e~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~~kL~DFg~a~~~~~~~---  195 (350)
T 1rdq_E          121 EYVAGGEMFSHLRRIG--RFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRT---  195 (350)
T ss_dssp             ECCTTCBHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECSSCB---
T ss_pred             cCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCcccccCccceEEECCCCCEEEcccccceeccCCc---
Confidence            9999999999997654  48999999999999999999976        5689999999999999999999875432   


Q ss_pred             eecccccc
Q 039406          235 STRVMGTF  242 (243)
Q Consensus       235 ~~~~~GT~  242 (243)
                       ...+||+
T Consensus       196 -~~~~gt~  202 (350)
T 1rdq_E          196 -WTLCGTP  202 (350)
T ss_dssp             -CCCEECG
T ss_pred             -ccccCCc
Confidence             2356665

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=99.93  E-value=2.5e-25  Score=187.47  Aligned_cols=153  Identities=20%  Similarity=0.233  Sum_probs=126.3

Q ss_pred             CccccHHHHHHHhCC----------CCccceeeecCceEEEEEEecCCc-------------hhHHHHHHHHHHHHhcCC
Q 039406           86 KSTFTYEELARATDG----------FSDANLLRQDGFGYVHRGVLPNGK-------------EGEREFQAEVEIISRVHH  142 (243)
Q Consensus        86 ~~~~~~~~~~~~~~~----------~~~~~~lg~G~~g~V~~~~~~~~~-------------~~~~~~~~E~~~l~~l~h  142 (243)
                      ...++++++...++.          |...+.||+|+||.||+|+...+.             ...+.+.+|+.+|++++|
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h  101 (321)
T 2c30_A           22 SGVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQH  101 (321)
T ss_dssp             ---CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTTCCC
T ss_pred             CCcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHhCCC
Confidence            456788888877754          666789999999999999876432             245678999999999999


Q ss_pred             CccceEEEEEEeCCeeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCC
Q 039406          143 KHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKF  214 (243)
Q Consensus       143 p~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~  214 (243)
                      +||+++++++...+..|+||||+++++|.+++...   .+++..+..++.|++.||.|||.        +++|||++.++
T Consensus       102 ~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~---~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~  178 (321)
T 2c30_A          102 FNVVEMYKSYLVGEELWVLMEFLQGGALTDIVSQV---RLNEEQIATVCEAVLQALAYLHAQGVIHRDIKSDSILLTLDG  178 (321)
T ss_dssp             TTBCCEEEEEEETTEEEEEECCCCSCBHHHHHTTC---CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTC
T ss_pred             CCcceEEEEEEECCEEEEEEecCCCCCHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCC
Confidence            99999999999999999999999999999998643   48999999999999999999976        46899999999


Q ss_pred             cEEEeccCCceecCCCCceeeecccccc
Q 039406          215 EAKVADFGLAKIASDVNTHVSTRVMGTF  242 (243)
Q Consensus       215 ~~kl~DFG~a~~~~~~~~~~~~~~~GT~  242 (243)
                      .+||+|||+++.+...... ....+||+
T Consensus       179 ~~kl~Dfg~~~~~~~~~~~-~~~~~gt~  205 (321)
T 2c30_A          179 RVKLSDFGFCAQISKDVPK-RKSLVGTP  205 (321)
T ss_dssp             CEEECCCTTCEECCSSSCC-BCCCCSCG
T ss_pred             cEEEeeeeeeeecccCccc-cccccCCc
Confidence            9999999999987654322 22345654

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=99.93  E-value=1.3e-25  Score=202.07  Aligned_cols=143  Identities=27%  Similarity=0.333  Sum_probs=123.2

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEE
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLV  161 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv  161 (243)
                      .++|...++||+|+||.||+|+.+.+.+                ....+.+|+.+|++++|+||+++++++.+.+.+|||
T Consensus       183 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lV  262 (576)
T 2acx_A          183 KNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLV  262 (576)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             ccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCEEEEE
Confidence            3678999999999999999998765432                235578999999999999999999999999999999


Q ss_pred             EeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCce
Q 039406          162 YEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNTH  233 (243)
Q Consensus       162 ~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~~  233 (243)
                      ||||.||+|.+++...+...+++..++.++.||+.||.|||.        ||+||||+.++.+||+|||+|+.+..... 
T Consensus       263 mEy~~gg~L~~~l~~~~~~~l~e~~~~~i~~qIl~aL~yLH~~gIvHrDLKPeNILld~~g~vKL~DFGla~~~~~~~~-  341 (576)
T 2acx_A          263 LTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLHRERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQT-  341 (576)
T ss_dssp             ECCCCSCBHHHHHHSSSSCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCCTTCEECCTTCC-
T ss_pred             EEcCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCEeccCCchheEEEeCCCCeEEEecccceecccCcc-
Confidence            999999999999987655569999999999999999999986        56899999999999999999998765432 


Q ss_pred             eeecccccc
Q 039406          234 VSTRVMGTF  242 (243)
Q Consensus       234 ~~~~~~GT~  242 (243)
                       ....+||+
T Consensus       342 -~~~~~GT~  349 (576)
T 2acx_A          342 -IKGRVGTV  349 (576)
T ss_dssp             -EECCCSCG
T ss_pred             -ccccCCCc
Confidence             23356775

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=99.93  E-value=5.4e-26  Score=191.72  Aligned_cols=130  Identities=23%  Similarity=0.328  Sum_probs=114.5

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCch--------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEe
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGKE--------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYE  163 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~--------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e  163 (243)
                      .++|.+.+.||+|+||.||+|++..+.+              ..+.+.+|+.+++.++|+||+++++++.+.+..|+|||
T Consensus         6 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e   85 (323)
T 3tki_A            6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLE   85 (323)
T ss_dssp             TTCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             hhhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEEE
Confidence            3789999999999999999998764432              23568899999999999999999999999999999999


Q ss_pred             ccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          164 FVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       164 ~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      ||++++|.+++....  .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++.+..
T Consensus        86 ~~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~aL~~LH~~givH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~  157 (323)
T 3tki_A           86 YCSGGELFDRIEPDI--GMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRY  157 (323)
T ss_dssp             CCTTEEGGGGSBTTT--BCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEECEE
T ss_pred             cCCCCcHHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHHHCCccccccchHHEEEeCCCCEEEEEeeccceecc
Confidence            999999999997554  48999999999999999999976        56899999999999999999987643

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=99.93  E-value=1.2e-25  Score=197.34  Aligned_cols=144  Identities=19%  Similarity=0.211  Sum_probs=119.8

Q ss_pred             HHhCCCCccceeeecCceEEEEEEecCCc---------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEE
Q 039406           96 RATDGFSDANLLRQDGFGYVHRGVLPNGK---------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRML  160 (243)
Q Consensus        96 ~~~~~~~~~~~lg~G~~g~V~~~~~~~~~---------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~l  160 (243)
                      ...++|.+.+.||+|+||.||+|....+.               ...+.+.+|+.+|+.++||||+++++++.+.+..|+
T Consensus         8 ~~~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~l   87 (444)
T 3soa_A            8 RFTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYL   87 (444)
T ss_dssp             HHHHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEEEE
T ss_pred             cccCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEEEE
Confidence            34578999999999999999999765432               135678899999999999999999999999999999


Q ss_pred             EEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEEC---CCCcEEEeccCCceecCC
Q 039406          161 VYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLD---FKFEAKVADFGLAKIASD  229 (243)
Q Consensus       161 v~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~---~~~~~kl~DFG~a~~~~~  229 (243)
                      |||||.+|+|.+++...+  .+++..+..++.|++.||.|||.        ||+|||++   .++.+||+|||+|+.+..
T Consensus        88 v~E~~~gg~L~~~i~~~~--~~~e~~~~~i~~qil~aL~~lH~~givHrDlKp~NIll~~~~~~~~vkL~DFG~a~~~~~  165 (444)
T 3soa_A           88 IFDLVTGGELFEDIVARE--YYSEADASHCIQQILEAVLHCHQMGVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEG  165 (444)
T ss_dssp             EECCCBCCBHHHHHHHCS--CCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSSTTEEESBSSTTCCEEECCCSSCBCCCT
T ss_pred             EEEeCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEeccCCCCcEEEccCceeEEecC
Confidence            999999999999987654  48999999999999999999986        57999998   467899999999988765


Q ss_pred             CCceeeecccccc
Q 039406          230 VNTHVSTRVMGTF  242 (243)
Q Consensus       230 ~~~~~~~~~~GT~  242 (243)
                      .... ....+||+
T Consensus       166 ~~~~-~~~~~gt~  177 (444)
T 3soa_A          166 EQQA-WFGFAGTP  177 (444)
T ss_dssp             TCCB-CCCSCSCG
T ss_pred             CCce-eecccCCc
Confidence            4332 23356665

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=99.93  E-value=3.6e-26  Score=192.19  Aligned_cols=138  Identities=39%  Similarity=0.717  Sum_probs=120.2

Q ss_pred             HHHHHHhCCCCccceeeecCceEEEEEEecCCc------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeE
Q 039406           92 EELARATDGFSDANLLRQDGFGYVHRGVLPNGK------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRM  159 (243)
Q Consensus        92 ~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~  159 (243)
                      .++...+++|...+.||+|+||.||+|++..+.            ...+.+.+|+.+|+.++|+||+++++++...+..|
T Consensus        32 ~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~  111 (321)
T 2qkw_B           32 VDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDERNEMI  111 (321)
T ss_dssp             SCCCCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTTBCCEEEECCCTTCCE
T ss_pred             HHHHHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCeEE
Confidence            344556689999999999999999999865432            24577899999999999999999999999999999


Q ss_pred             EEEeccCCCCHHHHhccCCC--CCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          160 LVYEFVLNNTLVFHLHGKGQ--PTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       160 lv~e~~~~g~L~~~l~~~~~--~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      +||||+++|+|.+++.....  ..+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++....
T Consensus       112 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~  191 (321)
T 2qkw_B          112 LIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTRAIIHRDVKSINILLDENFVPKITDFGISKKGTE  191 (321)
T ss_dssp             EEEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCSTTEEECTTCCEEECCCTTCEECSS
T ss_pred             EEEEcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhcCCCeecCCCCHHHEEECCCCCEEEeeccccccccc
Confidence            99999999999999865432  248999999999999999999986        56999999999999999999987654

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=99.93  E-value=1.3e-25  Score=191.73  Aligned_cols=143  Identities=23%  Similarity=0.290  Sum_probs=120.7

Q ss_pred             HhCCCCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhc-CCCccceEEEEEEeCCeeE
Q 039406           97 ATDGFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRV-HHKHLVSLVGYYTAGSQRM  159 (243)
Q Consensus        97 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~~~  159 (243)
                      ..++|.+.+.||+|+||.||+|+.+.+.+                ..+.+.+|..+|..+ +|+||+++++++.+.+.+|
T Consensus        18 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~   97 (353)
T 2i0e_A           18 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLY   97 (353)
T ss_dssp             -CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEEE
T ss_pred             chHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEEE
Confidence            34789999999999999999998765431                345678899999988 7999999999999999999


Q ss_pred             EEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCC
Q 039406          160 LVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVN  231 (243)
Q Consensus       160 lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~  231 (243)
                      +|||||.||+|.+++...+  .+++..++.++.|++.||.|||.        ||+|||++.++.+||+|||+|+......
T Consensus        98 lv~E~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~  175 (353)
T 2i0e_A           98 FVMEYVNGGDLMYHIQQVG--RFKEPHAVFYAAEIAIGLFFLQSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDG  175 (353)
T ss_dssp             EEEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTT
T ss_pred             EEEeCCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCEEeccCCHHHEEEcCCCcEEEEeCCcccccccCC
Confidence            9999999999999997644  48999999999999999999986        5689999999999999999998754332


Q ss_pred             ceeeecccccc
Q 039406          232 THVSTRVMGTF  242 (243)
Q Consensus       232 ~~~~~~~~GT~  242 (243)
                      . .....+||+
T Consensus       176 ~-~~~~~~gt~  185 (353)
T 2i0e_A          176 V-TTKTFCGTP  185 (353)
T ss_dssp             C-CBCCCCSCG
T ss_pred             c-ccccccCCc
Confidence            2 223456775

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=99.93  E-value=1.4e-25  Score=192.06  Aligned_cols=143  Identities=23%  Similarity=0.289  Sum_probs=120.2

Q ss_pred             HHhCCCCccceeeecCceEEEEEEecCCc---------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEE
Q 039406           96 RATDGFSDANLLRQDGFGYVHRGVLPNGK---------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRML  160 (243)
Q Consensus        96 ~~~~~~~~~~~lg~G~~g~V~~~~~~~~~---------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~l  160 (243)
                      ...++|.+.+.||+|+||.||+|..+.+.               ...+.+.+|+.+|++++||||+++++++.+.+..|+
T Consensus        26 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~l  105 (362)
T 2bdw_A           26 KFSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYL  105 (362)
T ss_dssp             HHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEE
T ss_pred             CcccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEE
Confidence            34578999999999999999999876432               134678899999999999999999999999999999


Q ss_pred             EEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCC---CcEEEeccCCceecCC
Q 039406          161 VYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFK---FEAKVADFGLAKIASD  229 (243)
Q Consensus       161 v~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~---~~~kl~DFG~a~~~~~  229 (243)
                      |||||.+|+|.+++....  .+++..++.++.|++.||.|||.        +|+|||++.+   +.+||+|||+++.+..
T Consensus       106 v~e~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~al~~lH~~~ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~~~~~  183 (362)
T 2bdw_A          106 VFDLVTGGELFEDIVARE--FYSEADASHCIQQILESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVND  183 (362)
T ss_dssp             EECCCCSCBHHHHHTTCS--CCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEESCSSTTCCEEECCCTTCBCCTT
T ss_pred             EEecCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCeEeccCchHHEEEecCCCCCCEEEeecCcceEecC
Confidence            999999999999987554  48999999999999999999986        5689999865   4599999999988764


Q ss_pred             CCceeeecccccc
Q 039406          230 VNTHVSTRVMGTF  242 (243)
Q Consensus       230 ~~~~~~~~~~GT~  242 (243)
                      ...  ....+||+
T Consensus       184 ~~~--~~~~~gt~  194 (362)
T 2bdw_A          184 SEA--WHGFAGTP  194 (362)
T ss_dssp             CCS--CCCSCSCT
T ss_pred             Ccc--cccCCCCc
Confidence            432  22356665

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=99.93  E-value=2.2e-25  Score=199.76  Aligned_cols=144  Identities=26%  Similarity=0.367  Sum_probs=122.7

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVY  162 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  162 (243)
                      ++|...++||+|+||.||+|+.+.+.+                ....+.+|+.+|++++|+||+++++++.+.+.+|+||
T Consensus       185 ~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lVm  264 (543)
T 3c4z_A          185 DWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTDLCLVM  264 (543)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCEEEEEE
Confidence            678889999999999999998865432                2356788999999999999999999999999999999


Q ss_pred             eccCCCCHHHHhccCC--CCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCc
Q 039406          163 EFVLNNTLVFHLHGKG--QPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNT  232 (243)
Q Consensus       163 e~~~~g~L~~~l~~~~--~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~  232 (243)
                      |||+||+|.+++....  ...+++..++.++.||+.||.|||.        ||+||||+.+|.+||+|||+++.+.....
T Consensus       265 E~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH~~gIvHrDLKP~NILl~~~g~vkL~DFGla~~~~~~~~  344 (543)
T 3c4z_A          265 TIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQRNIIYRDLKPENVLLDDDGNVRISDLGLAVELKAGQT  344 (543)
T ss_dssp             CCCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCCTTCEECCTTCC
T ss_pred             EeccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHcCCcccCCChHHEEEeCCCCEEEeecceeeeccCCCc
Confidence            9999999999987543  3358999999999999999999986        56899999999999999999998765443


Q ss_pred             eeeeccccccC
Q 039406          233 HVSTRVMGTFG  243 (243)
Q Consensus       233 ~~~~~~~GT~G  243 (243)
                      . ....+||++
T Consensus       345 ~-~~~~~GT~~  354 (543)
T 3c4z_A          345 K-TKGYAGTPG  354 (543)
T ss_dssp             C-BCCCCSCTT
T ss_pred             c-cccccCCcc
Confidence            2 234577763

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=99.93  E-value=1.8e-25  Score=188.57  Aligned_cols=131  Identities=26%  Similarity=0.409  Sum_probs=115.3

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc-----------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK-----------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLV  161 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~-----------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv  161 (243)
                      ++|.+.+.||+|+||.||+|.+..+.                 ...+.+.+|+.+|++++|+||+++++++.+.+..|+|
T Consensus        49 ~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv  128 (325)
T 3kul_A           49 SRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMIV  128 (325)
T ss_dssp             GGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGGCCEEE
T ss_pred             hHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCccEEE
Confidence            67899999999999999999875321                 2456789999999999999999999999999999999


Q ss_pred             EeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          162 YEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       162 ~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      ||||++++|.+++..... .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++.+...
T Consensus       129 ~e~~~~~~L~~~l~~~~~-~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~  204 (325)
T 3kul_A          129 TEYMENGSLDTFLRTHDG-QFTIMQLVGMLRGVGAGMRYLSDLGYVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDD  204 (325)
T ss_dssp             EECCTTCBHHHHHHTTTT-CSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCSSCEECC--
T ss_pred             eeCCCCCcHHHHHHhccc-CCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCcceEEECCCCCEEECCCCcccccccC
Confidence            999999999999975533 58999999999999999999976        468999999999999999999987654

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=99.93  E-value=1.8e-25  Score=189.64  Aligned_cols=140  Identities=21%  Similarity=0.282  Sum_probs=119.0

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEE
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLV  161 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv  161 (243)
                      .++|.+.+.||+|+||.||+|.+..+.+                ..+.+.+|+.+|+.++||||+++++++.+.+.+|+|
T Consensus         8 i~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv   87 (336)
T 3h4j_B            8 IGPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVMV   87 (336)
T ss_dssp             ETTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             cCCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence            3789999999999999999998755432                235688999999999999999999999999999999


Q ss_pred             EeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCce
Q 039406          162 YEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNTH  233 (243)
Q Consensus       162 ~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~~  233 (243)
                      |||+ +|+|.+++...+  .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++....... 
T Consensus        88 ~E~~-~g~l~~~l~~~~--~l~~~~~~~i~~qi~~aL~~LH~~givH~Dlkp~NIll~~~~~~kl~DFG~s~~~~~~~~-  163 (336)
T 3h4j_B           88 IEYA-GGELFDYIVEKK--RMTEDEGRRFFQQIICAIEYCHRHKIVHRDLKPENLLLDDNLNVKIADFGLSNIMTDGNF-  163 (336)
T ss_dssp             ECCC-CEEHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHHTCCCCCCSTTTEEECTTCCEEECCSSCTBTTTTSBT-
T ss_pred             EECC-CCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCeEecCCchhhEEEcCCCCEEEEEeccceeccCCcc-
Confidence            9999 679998886554  48999999999999999999986        57999999999999999999987755432 


Q ss_pred             eeecccccc
Q 039406          234 VSTRVMGTF  242 (243)
Q Consensus       234 ~~~~~~GT~  242 (243)
                       ....+||+
T Consensus       164 -~~~~~gt~  171 (336)
T 3h4j_B          164 -LKTSCGSP  171 (336)
T ss_dssp             -TCCCTTST
T ss_pred             -cccccCCc
Confidence             12345664

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=99.93  E-value=1.1e-24  Score=181.85  Aligned_cols=145  Identities=36%  Similarity=0.684  Sum_probs=126.3

Q ss_pred             CccccHHHHHHHhCCCCcc------ceeeecCceEEEEEEecCC---------------chhHHHHHHHHHHHHhcCCCc
Q 039406           86 KSTFTYEELARATDGFSDA------NLLRQDGFGYVHRGVLPNG---------------KEGEREFQAEVEIISRVHHKH  144 (243)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~------~~lg~G~~g~V~~~~~~~~---------------~~~~~~~~~E~~~l~~l~hp~  144 (243)
                      ...+++.++...+++|...      +.||+|+||.||+|...+.               ....+.+.+|+.+|++++|+|
T Consensus        12 ~~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~   91 (307)
T 2nru_A           12 FHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHEN   91 (307)
T ss_dssp             CEECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEESSSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCTT
T ss_pred             CCcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEECCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCCC
Confidence            3568899999999998877      8999999999999975432               124577899999999999999


Q ss_pred             cceEEEEEEeCCeeEEEEeccCCCCHHHHhccCC-CCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCc
Q 039406          145 LVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKG-QPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFE  215 (243)
Q Consensus       145 iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~-~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~  215 (243)
                      |+++++++.+.+..|+||||+++++|.+++.... ...+++..++.++.|++.||.|||.        +++|||++.++.
T Consensus        92 i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dlkp~Nili~~~~~  171 (307)
T 2nru_A           92 LVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHENHHIHRDIKSANILLDEAFT  171 (307)
T ss_dssp             BCCEEEEECSSSSCEEEEECCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCC
T ss_pred             eEEEEEEEecCCceEEEEEecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhcCCeecCCCCHHHEEEcCCCc
Confidence            9999999999999999999999999999986432 2358999999999999999999986        468999999999


Q ss_pred             EEEeccCCceecCCC
Q 039406          216 AKVADFGLAKIASDV  230 (243)
Q Consensus       216 ~kl~DFG~a~~~~~~  230 (243)
                      +||+|||+++.....
T Consensus       172 ~kl~Dfg~~~~~~~~  186 (307)
T 2nru_A          172 AKISDFGLARASEKF  186 (307)
T ss_dssp             EEECCCTTCEECCSC
T ss_pred             EEEeecccccccccc
Confidence            999999999987543

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=99.93  E-value=2.1e-25  Score=191.48  Aligned_cols=133  Identities=22%  Similarity=0.350  Sum_probs=115.4

Q ss_pred             hCCCCccceeeecCceEEEEEEecCC---------------------chhHHHHHHHHHHHHhc-CCCccceEEEEEEeC
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNG---------------------KEGEREFQAEVEIISRV-HHKHLVSLVGYYTAG  155 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~---------------------~~~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~  155 (243)
                      .++|.+.+.||+|+||.||+|.+...                     ....+.+.+|+.+|+++ +||||+++++++.+.
T Consensus        80 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~  159 (370)
T 2psq_A           80 RDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD  159 (370)
T ss_dssp             GGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECSS
T ss_pred             HHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEccC
Confidence            37789999999999999999975321                     12456789999999999 899999999999999


Q ss_pred             CeeEEEEeccCCCCHHHHhccCCC--------------CCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCC
Q 039406          156 SQRMLVYEFVLNNTLVFHLHGKGQ--------------PTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFK  213 (243)
Q Consensus       156 ~~~~lv~e~~~~g~L~~~l~~~~~--------------~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~  213 (243)
                      +.+|+||||+.+|+|.+++.....              ..+++..++.++.||+.||.|||.        |++|||++.+
T Consensus       160 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~  239 (370)
T 2psq_A          160 GPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTEN  239 (370)
T ss_dssp             SSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTT
T ss_pred             CCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCCeeccccchhhEEECCC
Confidence            999999999999999999976431              247899999999999999999976        5689999999


Q ss_pred             CcEEEeccCCceecCCC
Q 039406          214 FEAKVADFGLAKIASDV  230 (243)
Q Consensus       214 ~~~kl~DFG~a~~~~~~  230 (243)
                      +.+||+|||+|+.+...
T Consensus       240 ~~~kl~DFG~a~~~~~~  256 (370)
T 2psq_A          240 NVMKIADFGLARDINNI  256 (370)
T ss_dssp             CCEEECCCSSCEETTCC
T ss_pred             CCEEEccccCCcccCcc
Confidence            99999999999977543

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=99.93  E-value=3.1e-25  Score=186.57  Aligned_cols=134  Identities=16%  Similarity=0.260  Sum_probs=112.9

Q ss_pred             HhCCCCccceeeecCceEEEEEEecCCc--------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCC------
Q 039406           97 ATDGFSDANLLRQDGFGYVHRGVLPNGK--------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGS------  156 (243)
Q Consensus        97 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~--------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~------  156 (243)
                      ..++|.+.+.||+|+||.||+|+++.+.              ...+.+.+|+.+|++++||||++++++|.+.+      
T Consensus         4 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~   83 (332)
T 3qd2_B            4 YLTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQE   83 (332)
T ss_dssp             HHHHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHH
T ss_pred             hhhcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhh
Confidence            3467999999999999999999876432              24577899999999999999999999986543      


Q ss_pred             ---------------------------------------------------eeEEEEeccCCCCHHHHhccCCC-CCCCH
Q 039406          157 ---------------------------------------------------QRMLVYEFVLNNTLVFHLHGKGQ-PTMDW  184 (243)
Q Consensus       157 ---------------------------------------------------~~~lv~e~~~~g~L~~~l~~~~~-~~l~~  184 (243)
                                                                         .+|+|||||++++|.+++..... ....+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~  163 (332)
T 3qd2_B           84 EMDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREH  163 (332)
T ss_dssp             HHHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCSGGGSCH
T ss_pred             hhhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCccchhh
Confidence                                                               38999999999999999976543 23466


Q ss_pred             HHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          185 PTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       185 ~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      ..++.++.|++.||.|||.        |++|||++.++.+||+|||+++.+...
T Consensus       164 ~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~  217 (332)
T 3qd2_B          164 GVCLHIFIQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQD  217 (332)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECSCC
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeeecCCCcccEEEeCCCCEEEeecCcccccccc
Confidence            6788999999999999976        568999999999999999999988654

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=99.93  E-value=2.7e-25  Score=188.18  Aligned_cols=130  Identities=22%  Similarity=0.344  Sum_probs=115.8

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc----------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK----------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVY  162 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~----------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  162 (243)
                      ++|.+.+.||+|+||.||++.+..+.                ...+.+.+|+.+|+.++|+||+++++++.+.+.+|+||
T Consensus        41 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  120 (335)
T 2owb_A           41 RRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVVL  120 (335)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             CceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEE
Confidence            67999999999999999999876542                23567889999999999999999999999999999999


Q ss_pred             eccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          163 EFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       163 e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      ||+++++|.+++....  .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++.+...
T Consensus       121 e~~~~~~L~~~~~~~~--~l~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~  194 (335)
T 2owb_A          121 ELCRRRSLLELHKRRK--ALTEPEARYYLRQIVLGCQYLHRNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYD  194 (335)
T ss_dssp             CCCTTCBHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCCTTCEECCST
T ss_pred             ecCCCCCHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHHCCCEecCCCchhEEEcCCCCEEEeeccCceecccC
Confidence            9999999999887543  48999999999999999999986        458999999999999999999987543

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=99.93  E-value=5e-25  Score=185.97  Aligned_cols=140  Identities=23%  Similarity=0.310  Sum_probs=119.3

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch-------------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE-------------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRM  159 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~-------------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~  159 (243)
                      +.|.+.+.||+|+||.||+|....+..                   ..+.+.+|+.+|++++||||+++++++.+.+.+|
T Consensus        11 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~   90 (326)
T 2y0a_A           11 DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVI   90 (326)
T ss_dssp             HHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             cceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEE
Confidence            568999999999999999998654321                   3567899999999999999999999999999999


Q ss_pred             EEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCC----cEEEeccCCceec
Q 039406          160 LVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKF----EAKVADFGLAKIA  227 (243)
Q Consensus       160 lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~----~~kl~DFG~a~~~  227 (243)
                      +|||||++++|.+++....  .+++..++.++.|++.||.|||.        +|+|||++.++    .+||+|||+++.+
T Consensus        91 lv~e~~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~~~  168 (326)
T 2y0a_A           91 LILELVAGGELFDFLAEKE--SLTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKI  168 (326)
T ss_dssp             EEEECCCSCBHHHHHTTSS--CCBHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESCSSSSSCCEEECCCTTCEEC
T ss_pred             EEEEcCCCCCHHHHHHhcC--CcCHHHHHHHHHHHHHHHHHHHHCCeEcCCCCHHHEEEecCCCCCCCEEEEECCCCeEC
Confidence            9999999999999996543  58999999999999999999986        56899998887    8999999999987


Q ss_pred             CCCCceeeecccccc
Q 039406          228 SDVNTHVSTRVMGTF  242 (243)
Q Consensus       228 ~~~~~~~~~~~~GT~  242 (243)
                      .....  ....+||+
T Consensus       169 ~~~~~--~~~~~gt~  181 (326)
T 2y0a_A          169 DFGNE--FKNIFGTP  181 (326)
T ss_dssp             CTTSC--CCCCCSCT
T ss_pred             CCCCc--cccccCCc
Confidence            54332  22345654

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=99.92  E-value=3.9e-25  Score=195.62  Aligned_cols=140  Identities=24%  Similarity=0.317  Sum_probs=121.0

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVY  162 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  162 (243)
                      ++|.+.+.||+|+||.||+|++..+.+                ....+.+|+.+|+.++||||+++++++.+.+.+|+||
T Consensus        16 ~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~lv~   95 (476)
T 2y94_A           16 GHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMVM   95 (476)
T ss_dssp             TTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             cCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEE
Confidence            789999999999999999998764421                2457889999999999999999999999999999999


Q ss_pred             eccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCcee
Q 039406          163 EFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNTHV  234 (243)
Q Consensus       163 e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~~~  234 (243)
                      |||++|+|.+++...+  .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++.+.....  
T Consensus        96 E~~~gg~L~~~l~~~~--~l~~~~~~~i~~qi~~aL~~LH~~givHrDLkp~NIll~~~~~vkL~DFG~a~~~~~~~~--  171 (476)
T 2y94_A           96 EYVSGGELFDYICKNG--RLDEKESRRLFQQILSGVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEF--  171 (476)
T ss_dssp             ECCSSEEHHHHTTSSS--SCCHHHHHHHHHHHHHHHHHHHTTTEECSCCSGGGEEECTTCCEEECCCSSCEECCTTCC--
T ss_pred             eCCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCCCcccccHHHEEEecCCCeEEEeccchhhcccccc--
Confidence            9999999999997544  48999999999999999999987        56899999999999999999998765432  


Q ss_pred             eecccccc
Q 039406          235 STRVMGTF  242 (243)
Q Consensus       235 ~~~~~GT~  242 (243)
                      ....+||+
T Consensus       172 ~~~~~gt~  179 (476)
T 2y94_A          172 LRTSCGSP  179 (476)
T ss_dssp             BCCCCSCS
T ss_pred             ccccCCCc
Confidence            22345665

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=99.92  E-value=7.9e-25  Score=189.05  Aligned_cols=142  Identities=23%  Similarity=0.313  Sum_probs=119.8

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCch-------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEec
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGKE-------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEF  164 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~-------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  164 (243)
                      .++|.+.+.||+|+||.||+|....+.+             ....+.+|+.+|++++|+||+++++++.+.+.+|+||||
T Consensus        50 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~E~  129 (387)
T 1kob_A           50 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEF  129 (387)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEEC
T ss_pred             ccceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEEEEc
Confidence            4689999999999999999998765432             345788999999999999999999999999999999999


Q ss_pred             cCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECC--CCcEEEeccCCceecCCCCcee
Q 039406          165 VLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDF--KFEAKVADFGLAKIASDVNTHV  234 (243)
Q Consensus       165 ~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~--~~~~kl~DFG~a~~~~~~~~~~  234 (243)
                      |.+|+|.+++..... .+++..++.++.|++.||.|||.        +++|||++.  ++.+||+|||+++.+...... 
T Consensus       130 ~~gg~L~~~l~~~~~-~l~~~~~~~i~~qi~~aL~~LH~~givHrDlkp~NIll~~~~~~~vkL~DFG~a~~~~~~~~~-  207 (387)
T 1kob_A          130 LSGGELFDRIAAEDY-KMSEAEVINYMRQACEGLKHMHEHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIV-  207 (387)
T ss_dssp             CCCCBHHHHTTCTTC-CBCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTSCE-
T ss_pred             CCCCcHHHHHHhhcC-CCCHHHHHHHHHHHHHHHHHHHhCCeeecccchHHeEEecCCCCceEEEecccceecCCCcce-
Confidence            999999999875432 58999999999999999999976        568999974  478999999999988654432 


Q ss_pred             eecccccc
Q 039406          235 STRVMGTF  242 (243)
Q Consensus       235 ~~~~~GT~  242 (243)
                       ...+||+
T Consensus       208 -~~~~gt~  214 (387)
T 1kob_A          208 -KVTTATA  214 (387)
T ss_dssp             -EEECSSG
T ss_pred             -eeeccCC
Confidence             2235554

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=99.92  E-value=4.8e-25  Score=182.88  Aligned_cols=130  Identities=21%  Similarity=0.281  Sum_probs=112.2

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch---------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEe
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE---------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYE  163 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~---------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e  163 (243)
                      ++|.+.+.||+|+||.||+|....+.+               ..+.+.+|+.+|++++|+||+++++++.+++.+|+|||
T Consensus         2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   81 (292)
T 3o0g_A            2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFE   81 (292)
T ss_dssp             CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEEEEe
Confidence            578999999999999999998765422               34778899999999999999999999999999999999


Q ss_pred             ccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          164 FVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       164 ~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      ||.+ +|.+.+..... .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++.+...
T Consensus        82 ~~~~-~l~~~~~~~~~-~l~~~~~~~~~~ql~~~l~~lH~~~ivH~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~  154 (292)
T 3o0g_A           82 FCDQ-DLKKYFDSCNG-DLDPEIVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLINRNGELKLANFGLARAFGIP  154 (292)
T ss_dssp             CCSE-EHHHHHHHTTT-CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECCSC
T ss_pred             cCCC-CHHHHHHhCCC-CCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEeecccceecCCc
Confidence            9976 56555544332 59999999999999999999986        568999999999999999999987543

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=99.92  E-value=2.4e-25  Score=188.01  Aligned_cols=141  Identities=25%  Similarity=0.350  Sum_probs=109.4

Q ss_pred             CCCCccceeeecCceEEEEEEecC---Cc-----------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCee
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPN---GK-----------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQR  158 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~---~~-----------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~  158 (243)
                      ++|.+.+.||+|+||.||+++...   +.                 .....+.+|+.+|+.++|+||+++++++...+.+
T Consensus        17 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~   96 (327)
T 3a62_A           17 ECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGKL   96 (327)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECSSCE
T ss_pred             HHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCCEE
Confidence            689999999999999999998641   11                 1234577899999999999999999999999999


Q ss_pred             EEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          159 MLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       159 ~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      |+|||||++++|.+++...+  .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++.....
T Consensus        97 ~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~al~~lH~~~ivH~Dlkp~Nill~~~~~~kl~Dfg~~~~~~~~  174 (327)
T 3a62_A           97 YLILEYLSGGELFMQLEREG--IFMEDTACFYLAEISMALGHLHQKGIIYRDLKPENIMLNHQGHVKLTDFGLCKESIHD  174 (327)
T ss_dssp             EEEEECCTTEEHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTTEEECTTSCEEECCCSCC------
T ss_pred             EEEEeCCCCCcHHHHHHhCC--CCCHHHHHHHHHHHHHHHHHHHhCCEEcccCCHHHeEECCCCcEEEEeCCcccccccC
Confidence            99999999999999997544  48899999999999999999986        569999999999999999999875433


Q ss_pred             Cceeeecccccc
Q 039406          231 NTHVSTRVMGTF  242 (243)
Q Consensus       231 ~~~~~~~~~GT~  242 (243)
                      .. .....+||+
T Consensus       175 ~~-~~~~~~gt~  185 (327)
T 3a62_A          175 GT-VTHTFCGTI  185 (327)
T ss_dssp             -----CTTSSCC
T ss_pred             Cc-cccccCCCc
Confidence            22 222345664

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.92  E-value=1.6e-25  Score=183.47  Aligned_cols=130  Identities=27%  Similarity=0.409  Sum_probs=115.9

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch-----------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccCC
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE-----------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLN  167 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~-----------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~  167 (243)
                      ++|.+.+.||+|+||.||+|.+..+..           ..+.+.+|+++|++++|+||+++++++.+.+..|+||||+++
T Consensus        10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~   89 (269)
T 4hcu_A           10 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFMEH   89 (269)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTTSBCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEECCTT
T ss_pred             hhceeeheecCCCccEEEEEEecCCCeEEEEEecccccCHHHHHHHHHHHHhCCCCCEeeEEEEEecCCceEEEEEeCCC
Confidence            678999999999999999998754432           457789999999999999999999999999999999999999


Q ss_pred             CCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          168 NTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       168 g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      ++|.+++..... .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++....
T Consensus        90 ~~L~~~l~~~~~-~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~  158 (269)
T 4hcu_A           90 GCLSDYLRTQRG-LFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLD  158 (269)
T ss_dssp             CBHHHHHHTTTT-CCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECGGGCEEECCTTGGGGBCC
T ss_pred             CcHHHHHHhcCc-ccCHHHHHHHHHHHHHHHHHHHhCCeecCCcchheEEEcCCCCEEeccccccccccc
Confidence            999999975543 58999999999999999999986        46899999999999999999987654

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=99.92  E-value=5e-25  Score=187.82  Aligned_cols=144  Identities=20%  Similarity=0.292  Sum_probs=119.0

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCch------------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeE
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGKE------------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRM  159 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~------------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~  159 (243)
                      .+.|.+.+.||+|+||.||+|+.+.+.+                  ..+.+.+|+.+|+.++||||+++++++.+.+.+|
T Consensus        23 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~  102 (351)
T 3c0i_A           23 EDVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGMLY  102 (351)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEE
T ss_pred             ccceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEE
Confidence            3579999999999999999998765421                  2567899999999999999999999999999999


Q ss_pred             EEEeccCCCCHHHHhccC--CCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCc---EEEeccCCcee
Q 039406          160 LVYEFVLNNTLVFHLHGK--GQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFE---AKVADFGLAKI  226 (243)
Q Consensus       160 lv~e~~~~g~L~~~l~~~--~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~---~kl~DFG~a~~  226 (243)
                      +|||||++++|.+++...  ....+++..++.++.|++.||.|||.        ||+|||++.++.   +||+|||+++.
T Consensus       103 lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivHrDlkp~NIl~~~~~~~~~vkl~Dfg~a~~  182 (351)
T 3c0i_A          103 MVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCHDNNIIHRDVKPHCVLLASKENSAPVKLGGFGVAIQ  182 (351)
T ss_dssp             EEEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECSSSTTCCEEECCCTTCEE
T ss_pred             EEEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCChHHeEEecCCCCCcEEEecCcceeE
Confidence            999999999998877543  22348999999999999999999976        568999986654   99999999998


Q ss_pred             cCCCCceeeecccccc
Q 039406          227 ASDVNTHVSTRVMGTF  242 (243)
Q Consensus       227 ~~~~~~~~~~~~~GT~  242 (243)
                      +...... ....+||+
T Consensus       183 ~~~~~~~-~~~~~gt~  197 (351)
T 3c0i_A          183 LGESGLV-AGGRVGTP  197 (351)
T ss_dssp             CCTTSCB-CCCCCSCG
T ss_pred             ecCCCee-ecCCcCCc
Confidence            8654332 22345664

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=99.92  E-value=2.7e-25  Score=195.74  Aligned_cols=128  Identities=20%  Similarity=0.292  Sum_probs=103.8

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc---------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeC-----Cee
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK---------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAG-----SQR  158 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~---------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~-----~~~  158 (243)
                      ++|.+.+.||+|+||.||+|++..+.               ...+.+.+|+++|++++|+|||++++++...     +.+
T Consensus        53 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~  132 (458)
T 3rp9_A           53 DRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDEL  132 (458)
T ss_dssp             TTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCCE
T ss_pred             CCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCceE
Confidence            78999999999999999999765432               2456788999999999999999999998543     579


Q ss_pred             EEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          159 MLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       159 ~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      |+||||+ +++|.+++....  .+++..++.++.||+.||.|||.        ||+||||+.++.+||+|||+|+.+..
T Consensus       133 ~lv~e~~-~~~L~~~~~~~~--~l~~~~~~~~~~qi~~aL~~LH~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~  208 (458)
T 3rp9_A          133 YVVLEIA-DSDFKKLFRTPV--YLTELHIKTLLYNLLVGVKYVHSAGILHRDLKPANCLVNQDCSVKVCDFGLARTVDY  208 (458)
T ss_dssp             EEEECCC-SEEHHHHHHSSC--CCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTCCEEECCCTTCBCTTS
T ss_pred             EEEEecc-ccchhhhcccCC--CCCHHHHHHHHHHHHHHHHHHHhCCcCCCCCChhhEEECCCCCEeecccccchhccC
Confidence            9999998 569999987543  49999999999999999999976        56899999999999999999998753

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=99.92  E-value=3.9e-25  Score=181.01  Aligned_cols=133  Identities=23%  Similarity=0.383  Sum_probs=117.8

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCch-----------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccC
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGKE-----------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVL  166 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~-----------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~  166 (243)
                      .++|.+.+.||+|+||.||+|.+..+..           ..+.+.+|+.+|++++|+||+++++++.+.+..|+||||++
T Consensus         7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~   86 (268)
T 3sxs_A            7 REEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGSMSEDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVTEYIS   86 (268)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBTTBCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEECCT
T ss_pred             hhheeeeeeeccCCCceEEEEEecCceeEEEEEeccCCCcHHHHHHHHHHHHhCCCCCEeeEEEEEccCCceEEEEEccC
Confidence            3679999999999999999998765421           45678999999999999999999999999999999999999


Q ss_pred             CCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCC
Q 039406          167 NNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVN  231 (243)
Q Consensus       167 ~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~  231 (243)
                      +++|.+++..... .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++......
T Consensus        87 ~~~L~~~l~~~~~-~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~  158 (268)
T 3sxs_A           87 NGCLLNYLRSHGK-GLEPSQLLEMCYDVCEGMAFLESHQFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQ  158 (268)
T ss_dssp             TCBHHHHHHHHGG-GCCHHHHHHHHHHHHHHHHHHHHTTEEESSCSGGGEEECTTCCEEECCTTCEEECCTTC
T ss_pred             CCcHHHHHHHcCC-CCCHHHHHHHHHHHHHHHHHHHHCCeecCCcCcceEEECCCCCEEEccCccceecchhh
Confidence            9999999976433 48999999999999999999986        5689999999999999999999876554

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=99.92  E-value=6.3e-25  Score=184.13  Aligned_cols=131  Identities=21%  Similarity=0.268  Sum_probs=114.5

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCch--------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEe
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGKE--------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYE  163 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~--------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e  163 (243)
                      .++|.+.+.||+|+||.||+|++..+..              ..+.+.+|+.+|++++|+||+++++++.+.+.+|+|||
T Consensus        20 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e   99 (311)
T 3niz_A           20 MEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSERCLTLVFE   99 (311)
T ss_dssp             SCEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSSCEEEEEE
T ss_pred             HhhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEccCCEEEEEEc
Confidence            3789999999999999999998754321              24678899999999999999999999999999999999


Q ss_pred             ccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          164 FVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       164 ~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      ||++ +|.+++..... .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++.+...
T Consensus       100 ~~~~-~l~~~~~~~~~-~~~~~~~~~~~~qi~~~l~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~  172 (311)
T 3niz_A          100 FMEK-DLKKVLDENKT-GLQDSQIKIYLYQLLRGVAHCHQHRILHRDLKPQNLLINSDGALKLADFGLARAFGIP  172 (311)
T ss_dssp             CCSE-EHHHHHHTCTT-CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEETTSC
T ss_pred             CCCC-CHHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCchHhEEECCCCCEEEccCcCceecCCC
Confidence            9975 88888765443 48999999999999999999986        568999999999999999999987543

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=99.92  E-value=4.1e-25  Score=189.94  Aligned_cols=131  Identities=27%  Similarity=0.429  Sum_probs=108.2

Q ss_pred             CCCCccceeeecCceEEEEEEecC---C--------------chhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPN---G--------------KEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLV  161 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~---~--------------~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv  161 (243)
                      ++|.+.+.||+|+||.||+|++..   .              ....+.+.+|+.+|++++|+||+++++++.+.+..|+|
T Consensus        45 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv  124 (373)
T 2qol_A           45 TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIV  124 (373)
T ss_dssp             GGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEEE
T ss_pred             hhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCceEEE
Confidence            579999999999999999997651   1              12456789999999999999999999999999999999


Q ss_pred             EeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          162 YEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       162 ~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      ||||++++|.+++..... .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++.+...
T Consensus       125 ~e~~~~~sL~~~l~~~~~-~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~  200 (373)
T 2qol_A          125 TEYMENGSLDSFLRKHDA-QFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLGRVLEDD  200 (373)
T ss_dssp             EECCTTCBHHHHHHTTTT-CSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCC---------
T ss_pred             EeCCCCCcHHHHHHhCCC-CCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCcceEEEcCCCCEEECcCccccccccC
Confidence            999999999999976543 58999999999999999999976        458999999999999999999987654

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=99.92  E-value=1.7e-25  Score=199.09  Aligned_cols=132  Identities=23%  Similarity=0.310  Sum_probs=116.8

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccC
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVL  166 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~  166 (243)
                      ++|.+.+.||+|+||.||+|+++...            ...+.|.+|+.+|++++|+||+++++++...+.+|||||||.
T Consensus       220 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~lv~E~~~  299 (495)
T 1opk_A          220 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMT  299 (495)
T ss_dssp             GGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSSSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCT
T ss_pred             HHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCcccchHHHHHHHHHHHhcCCCCEeeEEEEEecCCcEEEEEEccC
Confidence            45777889999999999999876422            246789999999999999999999999999999999999999


Q ss_pred             CCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          167 NNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       167 ~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      +|+|.+++.......+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++.+...
T Consensus       300 ~g~L~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~  371 (495)
T 1opk_A          300 YGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRNLAARNCLVGENHLVKVADFGLSRLMTGD  371 (495)
T ss_dssp             TCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECGGGCEEECCTTCEECCTTC
T ss_pred             CCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChhhEEECCCCcEEEeecccceeccCC
Confidence            9999999986555568999999999999999999976        458999999999999999999987544

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=99.92  E-value=4.9e-25  Score=184.72  Aligned_cols=134  Identities=31%  Similarity=0.489  Sum_probs=110.1

Q ss_pred             HhCCCCccceeeecCceEEEEEEecCC-------------chhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEe
Q 039406           97 ATDGFSDANLLRQDGFGYVHRGVLPNG-------------KEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYE  163 (243)
Q Consensus        97 ~~~~~~~~~~lg~G~~g~V~~~~~~~~-------------~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e  163 (243)
                      ..++|.+.+.||+|+||.||+|++...             ....+.+.+|+++|++++|+||+++++++.+.+.+|+|||
T Consensus        35 ~~~~y~i~~~lG~G~~g~V~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e  114 (309)
T 3p86_A           35 PWCDLNIKEKIGAGSFGTVHRAEWHGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIVTE  114 (309)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEETTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTCCEEEEE
T ss_pred             ChhHceeeeEeecCCCeEEEEEEECCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCceEEEEe
Confidence            346889999999999999999975432             1245678999999999999999999999999999999999


Q ss_pred             ccCCCCHHHHhccCCC-CCCCHHHHHHHHHHHHHhhhHhhc----------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          164 FVLNNTLVFHLHGKGQ-PTMDWPTRIKIALGSAKGLAYLHD----------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       164 ~~~~g~L~~~l~~~~~-~~l~~~~~~~i~~~i~~~l~~lH~----------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      ||++++|.+++..... ..+++..++.++.|++.||.|||.          +++|||++.++.+||+|||+++.....
T Consensus       115 ~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~~~  192 (309)
T 3p86_A          115 YLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNRNPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRLKAST  192 (309)
T ss_dssp             CCTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHHHTSSSCCCCTTCCGGGEEECTTCCEEECCCC--------
T ss_pred             cCCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCEECCCCChhhEEEeCCCcEEECCCCCCcccccc
Confidence            9999999999976431 138899999999999999999986          348999999999999999999875443

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=99.92  E-value=2.8e-25  Score=183.60  Aligned_cols=136  Identities=22%  Similarity=0.297  Sum_probs=120.3

Q ss_pred             HhCCCCccceeeecCceEEEEEEecCCc------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEec
Q 039406           97 ATDGFSDANLLRQDGFGYVHRGVLPNGK------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEF  164 (243)
Q Consensus        97 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  164 (243)
                      ..++|.+.+.||+|+||.||+|.+..+.            ...+.+.+|+.+|++++|+||+++++++.+.+..|+||||
T Consensus        11 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~   90 (288)
T 3kfa_A           11 ERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEF   90 (288)
T ss_dssp             CGGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSCSTHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEEC
T ss_pred             cccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCEEEEEEc
Confidence            3478999999999999999999876432            2457889999999999999999999999999999999999


Q ss_pred             cCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCc
Q 039406          165 VLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNT  232 (243)
Q Consensus       165 ~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~  232 (243)
                      +.+++|.+++.......+++..++.++.+++.+|.|||.        +++|||++.++.+||+|||+++.......
T Consensus        91 ~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~  166 (288)
T 3kfa_A           91 MTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTY  166 (288)
T ss_dssp             CTTEEHHHHHHHCCTTTSCHHHHHHHHHHHHHHHHHHHHHTCCCSCCSGGGEEECGGGCEEECCCCGGGTSCSSSS
T ss_pred             CCCCcHHHHHHhcccCCccHhHHHHHHHHHHHHHHHHHHCCccCCCCCcceEEEcCCCCEEEccCccceeccCCcc
Confidence            999999999987655569999999999999999999986        56899999999999999999998765443

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=99.92  E-value=1.6e-25  Score=196.67  Aligned_cols=142  Identities=23%  Similarity=0.259  Sum_probs=111.6

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEE
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLV  161 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv  161 (243)
                      .++|.+.+.||+|+||.||+|....+..                ....+.+|+.+|+.++|+||+++++++.+.+.+|||
T Consensus       147 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv  226 (446)
T 4ejn_A          147 MNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFV  226 (446)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEETTEEEEE
T ss_pred             hHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEEEEE
Confidence            3679999999999999999998765432                235577899999999999999999999999999999


Q ss_pred             EeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc---------CCCcEEECCCCcEEEeccCCceecCCCCc
Q 039406          162 YEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD---------DLANILLDFKFEAKVADFGLAKIASDVNT  232 (243)
Q Consensus       162 ~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~---------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~  232 (243)
                      ||||++|+|.+++....  .+++..++.++.|++.||.|||.         ||+||||+.++.+||+|||+|+.......
T Consensus       227 ~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~~giiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~  304 (446)
T 4ejn_A          227 MEYANGGELFFHLSRER--VFSEDRARFYGAEIVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGA  304 (446)
T ss_dssp             ECCCSSCBHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHHHHTCCCCCCCCGGGEEECSSSCEEECCCCCCCTTCC---
T ss_pred             EeeCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHhhcCCEEECCCCHHHEEECCCCCEEEccCCCceeccCCCc
Confidence            99999999999987644  48999999999999999999985         45899999999999999999987544332


Q ss_pred             eeeecccccc
Q 039406          233 HVSTRVMGTF  242 (243)
Q Consensus       233 ~~~~~~~GT~  242 (243)
                       .....+||+
T Consensus       305 -~~~~~~gt~  313 (446)
T 4ejn_A          305 -TMKTFCGTP  313 (446)
T ss_dssp             ---CCSSSCG
T ss_pred             -ccccccCCc
Confidence             223456765

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=99.92  E-value=8.2e-25  Score=187.19  Aligned_cols=146  Identities=16%  Similarity=0.120  Sum_probs=118.7

Q ss_pred             hCCCCccceeeecCceEEEEEEecC-----C----------chhHHHHHHHHHHHHhcC---CCccceEEEEEEeCCeeE
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPN-----G----------KEGEREFQAEVEIISRVH---HKHLVSLVGYYTAGSQRM  159 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~-----~----------~~~~~~~~~E~~~l~~l~---hp~iv~~~~~~~~~~~~~  159 (243)
                      .++|.+.+.||+|+||.||+|++..     .          ......+.+|+.+++.++   |+||+++++++...+..|
T Consensus        64 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~~~~~~~  143 (365)
T 3e7e_A           64 SKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPANPWEFYIGTQLMERLKPSMQHMFMKFYSAHLFQNGSV  143 (365)
T ss_dssp             SSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSCCHHHHHHHHHHHHHSCGGGGGGBCCEEEEEECSSCEE
T ss_pred             CEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCCChhHHHHHHHHHHHhhhhhhhhhhhhheeeecCCCcE
Confidence            3679999999999999999995322     1          114567888999988887   999999999999999999


Q ss_pred             EEEeccCCCCHHHHhccC---CCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECC-----------CCcEE
Q 039406          160 LVYEFVLNNTLVFHLHGK---GQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDF-----------KFEAK  217 (243)
Q Consensus       160 lv~e~~~~g~L~~~l~~~---~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~-----------~~~~k  217 (243)
                      ||||||++|+|.+++...   ....+++..++.++.|++.||.|||.        |++||||+.           ++.+|
T Consensus       144 lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH~~~ivHrDiKp~NIll~~~~~~~~~~~~~~~~~k  223 (365)
T 3e7e_A          144 LVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVHDCEIIHGDIKPDNFILGNGFLEQDDEDDLSAGLA  223 (365)
T ss_dssp             EEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEEECGGGTCC------CTTEE
T ss_pred             EEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHhhCCeecCCCCHHHEEecccccCccccccccCCEE
Confidence            999999999999999641   22359999999999999999999987        568999998           89999


Q ss_pred             EeccCCceecCC-CCceeeeccccccC
Q 039406          218 VADFGLAKIASD-VNTHVSTRVMGTFG  243 (243)
Q Consensus       218 l~DFG~a~~~~~-~~~~~~~~~~GT~G  243 (243)
                      |+|||+|+.+.. ......+..+||++
T Consensus       224 l~DFG~a~~~~~~~~~~~~~~~~gt~~  250 (365)
T 3e7e_A          224 LIDLGQSIDMKLFPKGTIFTAKCETSG  250 (365)
T ss_dssp             ECCCTTCEEGGGSCTTEEECCSSCTTS
T ss_pred             EeeCchhhhhhccCCCceeeeecCCCC
Confidence            999999987642 22223345677764

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=99.92  E-value=1.6e-25  Score=190.80  Aligned_cols=132  Identities=23%  Similarity=0.310  Sum_probs=104.9

Q ss_pred             HhCCCCccceeeecCceEEEEEEecCCch-----------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEecc
Q 039406           97 ATDGFSDANLLRQDGFGYVHRGVLPNGKE-----------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFV  165 (243)
Q Consensus        97 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~-----------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~  165 (243)
                      ..++|.+.+.||+|+||.||+|++..+.+           ..+.+.+|+.+|++++|+||+++++++.+.+.+|+||||+
T Consensus        51 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  130 (349)
T 2w4o_A           51 LSDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTVDKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLVLELV  130 (349)
T ss_dssp             GGGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC----------CHHHHHCCCTTBCCEEEEEECSSEEEEEECCC
T ss_pred             ccCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccchhHHHHHHHHHHHHhCCCCCCcceeeeEecCCeEEEEEEeC
Confidence            34789999999999999999998775432           3456788999999999999999999999999999999999


Q ss_pred             CCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECC---CCcEEEeccCCceecCCC
Q 039406          166 LNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDF---KFEAKVADFGLAKIASDV  230 (243)
Q Consensus       166 ~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~---~~~~kl~DFG~a~~~~~~  230 (243)
                      ++++|.+++...+  .+++..++.++.|++.||.|||.        +++|||++.   ++.+||+|||+++.....
T Consensus       131 ~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~~~~~  204 (349)
T 2w4o_A          131 TGGELFDRIVEKG--YYSERDAADAVKQILEAVAYLHENGIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQ  204 (349)
T ss_dssp             CSCBHHHHHTTCS--SCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEESSSSTTCCEEECCCC--------
T ss_pred             CCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCcccEEEecCCCCCCEEEccCccccccCcc
Confidence            9999999997654  48999999999999999999976        458999975   789999999999876543

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=99.92  E-value=5.2e-25  Score=183.18  Aligned_cols=141  Identities=19%  Similarity=0.257  Sum_probs=114.3

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCch---------------------------------------hHHHHHHHHHHHH
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGKE---------------------------------------GEREFQAEVEIIS  138 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~---------------------------------------~~~~~~~E~~~l~  138 (243)
                      .++|.+.+.||+|+||.||+|+...+.+                                       ..+.+.+|+++|+
T Consensus        12 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~   91 (298)
T 2zv2_A           12 LNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILK   91 (298)
T ss_dssp             ETTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHH
T ss_pred             ecceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHH
Confidence            3789999999999999999997654321                                       1246889999999


Q ss_pred             hcCCCccceEEEEEEe--CCeeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcE
Q 039406          139 RVHHKHLVSLVGYYTA--GSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANI  208 (243)
Q Consensus       139 ~l~hp~iv~~~~~~~~--~~~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~Ni  208 (243)
                      +++|+||+++++++.+  .+.+|+||||+++++|.+++...   .+++..++.++.|++.||.|||.        +++||
T Consensus        92 ~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~---~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Ni  168 (298)
T 2zv2_A           92 KLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTLK---PLSEDQARFYFQDLIKGIEYLHYQKIIHRDIKPSNL  168 (298)
T ss_dssp             TCCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSCSS---CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGE
T ss_pred             hCCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhhcC---CCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHE
Confidence            9999999999999986  56899999999999998865432   48999999999999999999986        56899


Q ss_pred             EECCCCcEEEeccCCceecCCCCceeeecccccc
Q 039406          209 LLDFKFEAKVADFGLAKIASDVNTHVSTRVMGTF  242 (243)
Q Consensus       209 Ll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~GT~  242 (243)
                      |++.++.+||+|||+++.+...... ....+||+
T Consensus       169 l~~~~~~~kl~Dfg~~~~~~~~~~~-~~~~~gt~  201 (298)
T 2zv2_A          169 LVGEDGHIKIADFGVSNEFKGSDAL-LSNTVGTP  201 (298)
T ss_dssp             EECTTSCEEECCCTTCEECSSSSCE-ECCCCSCG
T ss_pred             EECCCCCEEEecCCCcccccccccc-ccCCcCCc
Confidence            9999999999999999987654332 22345554

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=99.92  E-value=3.4e-25  Score=182.77  Aligned_cols=130  Identities=23%  Similarity=0.337  Sum_probs=112.9

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc-----------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccCC
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK-----------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLN  167 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~-----------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~  167 (243)
                      ++|.+.+.||+|+||.||++.+..+.           ...+.+.+|+++|++++|+||+++++++.+.+..|+||||+.+
T Consensus        24 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~  103 (283)
T 3gen_A           24 KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMAN  103 (283)
T ss_dssp             GGEEEEEECC---CEEEEEEEETTTEEEEEEEECTTSBCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEECCCTT
T ss_pred             HHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCCCCCHHHHHHHHHHHhcCCCCCEeeEEEEEecCCCeEEEEeccCC
Confidence            68999999999999999999876542           1457789999999999999999999999999999999999999


Q ss_pred             CCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          168 NTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       168 g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      ++|.+++..... .+++..++.++.|++.+|.|||.        +++|||++.++.+||+|||+++....
T Consensus       104 ~~L~~~l~~~~~-~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~  172 (283)
T 3gen_A          104 GCLLNYLREMRH-RFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLD  172 (283)
T ss_dssp             CBHHHHHHCGGG-CCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCSGGGEEECTTSCEEECSTTGGGGBCC
T ss_pred             CcHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHHHHCCccCCCCccceEEEcCCCCEEEccccccccccc
Confidence            999999976333 48999999999999999999986        46899999999999999999987644

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=99.92  E-value=1.2e-24  Score=187.55  Aligned_cols=131  Identities=22%  Similarity=0.329  Sum_probs=115.2

Q ss_pred             CCCCccceeeecCceEEEEEEecCC---------------------chhHHHHHHHHHHHHhc-CCCccceEEEEEEeCC
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNG---------------------KEGEREFQAEVEIISRV-HHKHLVSLVGYYTAGS  156 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~---------------------~~~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~  156 (243)
                      ++|.+.+.||+|+||.||+|++...                     ....+.+.+|+++|+++ +|+||+++++++...+
T Consensus        69 ~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~~  148 (382)
T 3tt0_A           69 DRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDG  148 (382)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred             hheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeeeccCC
Confidence            6899999999999999999975321                     12346789999999999 9999999999999999


Q ss_pred             eeEEEEeccCCCCHHHHhccCC--------------CCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCC
Q 039406          157 QRMLVYEFVLNNTLVFHLHGKG--------------QPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKF  214 (243)
Q Consensus       157 ~~~lv~e~~~~g~L~~~l~~~~--------------~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~  214 (243)
                      .+|+|||||.+|+|.+++....              ...+++..++.++.|++.||.|||.        |++||||+.++
T Consensus       149 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~  228 (382)
T 3tt0_A          149 PLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDN  228 (382)
T ss_dssp             SCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTC
T ss_pred             ceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhCCEecCCCCcceEEEcCCC
Confidence            9999999999999999997653              1348999999999999999999986        56899999999


Q ss_pred             cEEEeccCCceecCC
Q 039406          215 EAKVADFGLAKIASD  229 (243)
Q Consensus       215 ~~kl~DFG~a~~~~~  229 (243)
                      .+||+|||+|+.+..
T Consensus       229 ~~kL~DFG~a~~~~~  243 (382)
T 3tt0_A          229 VMKIADFGLARDIHH  243 (382)
T ss_dssp             CEEECSCSCCCCSSC
T ss_pred             cEEEcccCccccccc
Confidence            999999999997754

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=99.92  E-value=4.2e-25  Score=182.22  Aligned_cols=131  Identities=24%  Similarity=0.360  Sum_probs=105.6

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCc-----------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEE
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGK-----------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRML  160 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~-----------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~l  160 (243)
                      .++|.+.+.||+|+||.||+|++..+.                 ...+.+.+|+.+|++++||||+++++++. ++..|+
T Consensus        14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~l   92 (281)
T 1mp8_A           14 RERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPVWI   92 (281)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-SSSCEE
T ss_pred             hHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEEc-cCccEE
Confidence            367899999999999999999865421                 23567899999999999999999999974 567899


Q ss_pred             EEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          161 VYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       161 v~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      ||||+.+++|.+++..... .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++.+...
T Consensus        93 v~e~~~~~~L~~~l~~~~~-~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~  169 (281)
T 1mp8_A           93 IMELCTLGELRSFLQVRKY-SLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDS  169 (281)
T ss_dssp             EEECCTTEEHHHHHHHTTT-TSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECC----------
T ss_pred             EEecCCCCCHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHHhCCeecccccHHHEEECCCCCEEECccccccccCcc
Confidence            9999999999999976543 58999999999999999999986        468999999999999999999987544

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=99.92  E-value=1.2e-24  Score=182.79  Aligned_cols=133  Identities=20%  Similarity=0.244  Sum_probs=114.9

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch--------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCC--eeEEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE--------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGS--QRMLVY  162 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~--------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~--~~~lv~  162 (243)
                      ++|.+.+.||+|+||.||+|++..+.+              ..+.+.+|+++|++++|+||+++++++...+  ..|+||
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~   88 (319)
T 4euu_A            9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIM   88 (319)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEE
T ss_pred             CCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEEEEE
Confidence            679999999999999999998775421              3467889999999999999999999998765  789999


Q ss_pred             eccCCCCHHHHhccCCC-CCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEE----CCCCcEEEeccCCceecCC
Q 039406          163 EFVLNNTLVFHLHGKGQ-PTMDWPTRIKIALGSAKGLAYLHD--------DLANILL----DFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       163 e~~~~g~L~~~l~~~~~-~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl----~~~~~~kl~DFG~a~~~~~  229 (243)
                      |||++++|.+++..... ..+++..++.++.|++.||.|||.        +++|||+    +.++.+||+|||+++.+..
T Consensus        89 e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~a~~~~~  168 (319)
T 4euu_A           89 EFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELED  168 (319)
T ss_dssp             ECCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEECTTSCEEEEECCCTTCEECCT
T ss_pred             eCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEEeccCCCCceEEEccCCCceecCC
Confidence            99999999999976432 238999999999999999999976        5689999    7788999999999998765


Q ss_pred             CC
Q 039406          230 VN  231 (243)
Q Consensus       230 ~~  231 (243)
                      ..
T Consensus       169 ~~  170 (319)
T 4euu_A          169 DE  170 (319)
T ss_dssp             TC
T ss_pred             CC
Confidence            43

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=99.92  E-value=5.5e-25  Score=188.31  Aligned_cols=128  Identities=20%  Similarity=0.217  Sum_probs=111.2

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccC
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVL  166 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~  166 (243)
                      ++|.+.+.||+|+||.||+++...+.+            ..+.+.+|+.+++.++|+||+++++++.+.+.+|+|||||.
T Consensus        20 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~   99 (361)
T 3uc3_A           20 DRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAAIDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIIMEYAS   99 (361)
T ss_dssp             TTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTTSCHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECCC
T ss_pred             CcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCccccHHHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEEEEEeCC
Confidence            789999999999999999998765432            34678899999999999999999999999999999999999


Q ss_pred             CCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCc--EEEeccCCceecC
Q 039406          167 NNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFE--AKVADFGLAKIAS  228 (243)
Q Consensus       167 ~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~--~kl~DFG~a~~~~  228 (243)
                      +|+|.+++...+  .+++..++.++.|++.||.|||.        +++|||++.++.  +||+|||+++...
T Consensus       100 ~~~L~~~l~~~~--~~~~~~~~~i~~ql~~~L~~LH~~~ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~~~  169 (361)
T 3uc3_A          100 GGELYERICNAG--RFSEDEARFFFQQLLSGVSYCHSMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSV  169 (361)
T ss_dssp             SCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTCCSCCCCGGGEEECSSSSCCEEECCCCCC----
T ss_pred             CCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEcCCCCceEEEeecCcccccc
Confidence            999999986544  48999999999999999999986        568999987765  9999999998543

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=99.92  E-value=1.8e-24  Score=179.53  Aligned_cols=130  Identities=22%  Similarity=0.344  Sum_probs=115.6

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc----------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK----------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVY  162 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~----------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  162 (243)
                      ++|.+.+.||+|+||.||++.+..+.                ...+.+.+|+.+++.++|+||+++++++.+.+..|+||
T Consensus        15 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~   94 (294)
T 2rku_A           15 RRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVVL   94 (294)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             cceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCEEEEEE
Confidence            67999999999999999999876542                23567889999999999999999999999999999999


Q ss_pred             eccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          163 EFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       163 e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      ||+++++|.+++....  .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++.....
T Consensus        95 e~~~~~~L~~~~~~~~--~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~  168 (294)
T 2rku_A           95 ELCRRRSLLELHKRRK--ALTEPEARYYLRQIVLGCQYLHRNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYD  168 (294)
T ss_dssp             ECCTTCBHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECCST
T ss_pred             ecCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCccccCCChHhEEEcCCCCEEEEeccCceecccC
Confidence            9999999999887544  48999999999999999999986        458999999999999999999987543

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=99.92  E-value=1e-24  Score=190.83  Aligned_cols=130  Identities=21%  Similarity=0.288  Sum_probs=112.7

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCch---------------hHHHHHHHHHHHHhcCCCccceEEEEEEeC-----Ce
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGKE---------------GEREFQAEVEIISRVHHKHLVSLVGYYTAG-----SQ  157 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~---------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~-----~~  157 (243)
                      .++|.+.+.||+|+||.||+|++..+.+               ..+.+.+|+++|++++|+||+++++++...     +.
T Consensus        25 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  104 (432)
T 3n9x_A           25 PDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFDE  104 (432)
T ss_dssp             CTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred             cCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCCe
Confidence            3789999999999999999998765432               356789999999999999999999999866     57


Q ss_pred             eEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          158 RMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       158 ~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      +|+||||+. ++|.+++....  .+++..++.++.||+.||.|||.        ||+||||+.++.+||+|||+|+.+..
T Consensus       105 ~~lv~e~~~-~~L~~~~~~~~--~l~~~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~~kL~DFGla~~~~~  181 (432)
T 3n9x_A          105 LYIVLEIAD-SDLKKLFKTPI--FLTEEHIKTILYNLLLGENFIHESGIIHRDLKPANCLLNQDCSVKVCDFGLARTINS  181 (432)
T ss_dssp             EEEEEECCS-EEHHHHHHSSC--CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEEC--
T ss_pred             EEEEEecCC-cCHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHeEECCCCCEEEccCCCcccccc
Confidence            999999996 59999997643  48999999999999999999976        56899999999999999999998754


Q ss_pred             C
Q 039406          230 V  230 (243)
Q Consensus       230 ~  230 (243)
                      .
T Consensus       182 ~  182 (432)
T 3n9x_A          182 E  182 (432)
T ss_dssp             -
T ss_pred             c
Confidence            3

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=99.92  E-value=1.7e-24  Score=180.92  Aligned_cols=131  Identities=16%  Similarity=0.251  Sum_probs=114.7

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCch---------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEE
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGKE---------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVY  162 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~---------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  162 (243)
                      .++|.+.+.||+|+||.||+|.+..+.+               ..+.+.+|+.+|++++|+||+++++++.+.+..++||
T Consensus         2 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   81 (311)
T 4agu_A            2 MEKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLVF   81 (311)
T ss_dssp             -CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             cccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeecCCeEEEEE
Confidence            3689999999999999999998765321               3566889999999999999999999999999999999


Q ss_pred             eccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          163 EFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       163 e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      |||++++|.+++....  .+++..+..++.|++.||.|||.        +++|||++.++.+||+|||+++.+...
T Consensus        82 e~~~~~~l~~~~~~~~--~~~~~~~~~i~~~l~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~  155 (311)
T 4agu_A           82 EYCDHTVLHELDRYQR--GVPEHLVKSITWQTLQAVNFCHKHNCIHRDVKPENILITKHSVIKLCDFGFARLLTGP  155 (311)
T ss_dssp             ECCSEEHHHHHHHTSS--CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECC--
T ss_pred             EeCCCchHHHHHhhhc--CCCHHHHHHHHHHHHHHHHHHHHCCCcCCCCChhhEEEcCCCCEEEeeCCCchhccCc
Confidence            9999999998886544  48999999999999999999986        468999999999999999999987643

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=99.92  E-value=1.9e-24  Score=177.75  Aligned_cols=133  Identities=21%  Similarity=0.293  Sum_probs=117.2

Q ss_pred             HhCCCCccceeeecCceEEEEEEecCCc-------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEe
Q 039406           97 ATDGFSDANLLRQDGFGYVHRGVLPNGK-------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYE  163 (243)
Q Consensus        97 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~-------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e  163 (243)
                      ..++|.+.+.||+|+||.||+|....+.             ...+.+.+|+++|++++|+||+++++++.+.+..|+|||
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   86 (277)
T 3f3z_A            7 INQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLVME   86 (277)
T ss_dssp             HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             hhhhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEEEEe
Confidence            3467999999999999999999876543             245788999999999999999999999999999999999


Q ss_pred             ccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEE---CCCCcEEEeccCCceecCCCC
Q 039406          164 FVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILL---DFKFEAKVADFGLAKIASDVN  231 (243)
Q Consensus       164 ~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl---~~~~~~kl~DFG~a~~~~~~~  231 (243)
                      |+++++|.+++....  .+++..++.++.|++.||.|||.        +++|||+   +.++.+||+|||++..+....
T Consensus        87 ~~~~~~L~~~~~~~~--~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~~~~~  163 (277)
T 3f3z_A           87 LCTGGELFERVVHKR--VFRESDAARIMKDVLSAVAYCHKLNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFKPGK  163 (277)
T ss_dssp             CCCSCBHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESSSSTTCCEEECCCTTCEECCTTS
T ss_pred             ccCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCccCCCCCHHHEEEecCCCCCcEEEEecccceeccCcc
Confidence            999999999887644  48999999999999999999986        4689999   788999999999999876443

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=99.92  E-value=2.1e-25  Score=186.84  Aligned_cols=131  Identities=24%  Similarity=0.308  Sum_probs=109.6

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCc----------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCe----
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGK----------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQ----  157 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~----------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~----  157 (243)
                      .++|.+.+.||+|+||.||+|++..+.                .....+.+|+.++++++||||+++++++.....    
T Consensus        11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~   90 (311)
T 3ork_A           11 SDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPL   90 (311)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEE
T ss_pred             cCcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCcc
Confidence            378999999999999999999865432                234578899999999999999999999876543    


Q ss_pred             eEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          158 RMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       158 ~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      .|+|||||++++|.+++...+  .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++.+..
T Consensus        91 ~~lv~e~~~g~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~a~~~~~  168 (311)
T 3ork_A           91 PYIVMEYVDGVTLRDIVHTEG--PMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIAD  168 (311)
T ss_dssp             EEEEEECCCEEEHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEETTSCEEECCCSCC-----
T ss_pred             cEEEEecCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCCCcCCCCHHHEEEcCCCCEEEeeccCcccccc
Confidence            499999999999999997654  48999999999999999999986        46899999999999999999987754


Q ss_pred             C
Q 039406          230 V  230 (243)
Q Consensus       230 ~  230 (243)
                      .
T Consensus       169 ~  169 (311)
T 3ork_A          169 S  169 (311)
T ss_dssp             -
T ss_pred             c
Confidence            3

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=99.92  E-value=1.1e-24  Score=183.11  Aligned_cols=132  Identities=20%  Similarity=0.298  Sum_probs=100.4

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCch--------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEe
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGKE--------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYE  163 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~--------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e  163 (243)
                      .++|.+.+.||+|+||.||+|....+.+              ..+.+.+|+.+|++++||||+++++++.+++.+|+|||
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e   83 (317)
T 2pmi_A            4 SSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIHTENKLTLVFE   83 (317)
T ss_dssp             ---------------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEECCTTEEEEEEE
T ss_pred             ccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEEEECCeEEEEEE
Confidence            3689999999999999999998654321              34678899999999999999999999999999999999


Q ss_pred             ccCCCCHHHHhccCC----CCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          164 FVLNNTLVFHLHGKG----QPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       164 ~~~~g~L~~~l~~~~----~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      ||+ ++|.+++....    ...+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++.+...
T Consensus        84 ~~~-~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~  161 (317)
T 2pmi_A           84 FMD-NDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHENKILHRDLKPQNLLINKRGQLKLGDFGLARAFGIP  161 (317)
T ss_dssp             CCC-CBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCSSCEETTSC
T ss_pred             ecC-CCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCChHHeEEcCCCCEEECcCccceecCCC
Confidence            997 59998886431    2348899999999999999999986        568999999999999999999987543

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=99.92  E-value=9e-25  Score=184.88  Aligned_cols=135  Identities=23%  Similarity=0.394  Sum_probs=117.4

Q ss_pred             HHHhCCCCccceeeecCceEEEEEEecCC-------------------chhHHHHHHHHHHHHhcCCCccceEEEEEEeC
Q 039406           95 ARATDGFSDANLLRQDGFGYVHRGVLPNG-------------------KEGEREFQAEVEIISRVHHKHLVSLVGYYTAG  155 (243)
Q Consensus        95 ~~~~~~~~~~~~lg~G~~g~V~~~~~~~~-------------------~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~  155 (243)
                      ....++|.+.+.||+|+||.||+|++...                   ....+.+.+|+.+|++++|+||+++++++.+.
T Consensus        43 ~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~  122 (343)
T 1luf_A           43 EYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAVG  122 (343)
T ss_dssp             BCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSS
T ss_pred             EecHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEccC
Confidence            33457899999999999999999987631                   12356789999999999999999999999999


Q ss_pred             CeeEEEEeccCCCCHHHHhccCC----------------------CCCCCHHHHHHHHHHHHHhhhHhhc--------CC
Q 039406          156 SQRMLVYEFVLNNTLVFHLHGKG----------------------QPTMDWPTRIKIALGSAKGLAYLHD--------DL  205 (243)
Q Consensus       156 ~~~~lv~e~~~~g~L~~~l~~~~----------------------~~~l~~~~~~~i~~~i~~~l~~lH~--------~~  205 (243)
                      +..|+||||+++++|.+++....                      ...+++..++.++.|++.||.|||.        ++
T Consensus       123 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp  202 (343)
T 1luf_A          123 KPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHRDLAT  202 (343)
T ss_dssp             SSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSG
T ss_pred             CceEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCc
Confidence            99999999999999999997642                      1358999999999999999999986        46


Q ss_pred             CcEEECCCCcEEEeccCCceecCC
Q 039406          206 ANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       206 ~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      +|||++.++.+||+|||+++.+..
T Consensus       203 ~NIl~~~~~~~kl~Dfg~~~~~~~  226 (343)
T 1luf_A          203 RNCLVGENMVVKIADFGLSRNIYS  226 (343)
T ss_dssp             GGEEECGGGCEEECCCSCHHHHTG
T ss_pred             ceEEECCCCeEEEeecCCCccccc
Confidence            899999999999999999987643

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=99.92  E-value=2.2e-24  Score=186.05  Aligned_cols=130  Identities=14%  Similarity=0.111  Sum_probs=116.5

Q ss_pred             CCCCccceeeec--CceEEEEEEecCCc---------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEE
Q 039406           99 DGFSDANLLRQD--GFGYVHRGVLPNGK---------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLV  161 (243)
Q Consensus        99 ~~~~~~~~lg~G--~~g~V~~~~~~~~~---------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv  161 (243)
                      ++|.+.+.||+|  +||.||+|+...+.               ...+.+.+|+.+|+.++|+|||++++++.+.+.+|+|
T Consensus        25 ~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv  104 (389)
T 3gni_B           25 GCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWVV  104 (389)
T ss_dssp             GGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred             CcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECCEEEEE
Confidence            679999999999  99999999876542               2356788899999999999999999999999999999


Q ss_pred             EeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          162 YEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       162 ~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      ||||++++|.+++.......+++..++.++.|++.||.|||.        ||+|||++.++.+||+|||++....
T Consensus       105 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~NIll~~~~~~kl~dfg~~~~~~  179 (389)
T 3gni_B          105 TSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDYIHHMGYVHRSVKASHILISVDGKVYLSGLRSNLSMI  179 (389)
T ss_dssp             EECCTTCBHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCGGGCEECE
T ss_pred             EEccCCCCHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEcccccceeec
Confidence            999999999999987644469999999999999999999976        5689999999999999999987653

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=99.92  E-value=4.3e-25  Score=188.48  Aligned_cols=142  Identities=22%  Similarity=0.269  Sum_probs=119.7

Q ss_pred             CCCCccceeeecCceEEEEEEecCC----c----------------hhHHHHHHHHHHHHhc-CCCccceEEEEEEeCCe
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNG----K----------------EGEREFQAEVEIISRV-HHKHLVSLVGYYTAGSQ  157 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~----~----------------~~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~  157 (243)
                      ++|.+.+.||+|+||.||+++...+    .                ...+.+.+|+.+|+++ +|+||+++++++...+.
T Consensus        54 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~  133 (355)
T 1vzo_A           54 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETK  133 (355)
T ss_dssp             GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETTE
T ss_pred             cceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCce
Confidence            6899999999999999999987321    1                1235577899999999 69999999999999999


Q ss_pred             eEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          158 RMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       158 ~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      +|||||||++++|.+++....  .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++.+..
T Consensus       134 ~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kl~DfG~a~~~~~  211 (355)
T 1vzo_A          134 LHLILDYINGGELFTHLSQRE--RFTEHEVQIYVGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVA  211 (355)
T ss_dssp             EEEEECCCCSCBHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEESCSSEEEECCG
T ss_pred             EEEEeecCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCcEEEeeCCCCeeccc
Confidence            999999999999999997654  48999999999999999999976        46899999999999999999998755


Q ss_pred             CCceeeecccccc
Q 039406          230 VNTHVSTRVMGTF  242 (243)
Q Consensus       230 ~~~~~~~~~~GT~  242 (243)
                      .........+||+
T Consensus       212 ~~~~~~~~~~gt~  224 (355)
T 1vzo_A          212 DETERAYDFCGTI  224 (355)
T ss_dssp             GGGGGGCGGGSCC
T ss_pred             CCCCcccCcccCc
Confidence            4433334456665

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=99.92  E-value=6.3e-25  Score=187.07  Aligned_cols=142  Identities=25%  Similarity=0.319  Sum_probs=118.6

Q ss_pred             ccHHHHHHHhCCCCccceeeecCceEEEEEEecC-----C--------------chhHHHHHHHHHHHHhc-CCCccceE
Q 039406           89 FTYEELARATDGFSDANLLRQDGFGYVHRGVLPN-----G--------------KEGEREFQAEVEIISRV-HHKHLVSL  148 (243)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~-----~--------------~~~~~~~~~E~~~l~~l-~hp~iv~~  148 (243)
                      +....+....++|.+.+.||+|+||.||+|++..     +              ....+.+.+|+++|+++ +||||+++
T Consensus        12 ~~~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv~~   91 (359)
T 3vhe_A           12 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL   91 (359)
T ss_dssp             CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred             CCcccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcceeee
Confidence            3445556667899999999999999999997432     1              11346789999999999 79999999


Q ss_pred             EEEEEeCCe-eEEEEeccCCCCHHHHhccCCC------------------------------------------------
Q 039406          149 VGYYTAGSQ-RMLVYEFVLNNTLVFHLHGKGQ------------------------------------------------  179 (243)
Q Consensus       149 ~~~~~~~~~-~~lv~e~~~~g~L~~~l~~~~~------------------------------------------------  179 (243)
                      ++++.+.+. +++|||||.+|+|.+++.....                                                
T Consensus        92 ~~~~~~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (359)
T 3vhe_A           92 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEK  171 (359)
T ss_dssp             EEEECSTTSCCEEEEECCTTEEHHHHHHTTTTSBCSCC------------------------------------------
T ss_pred             eeeeecCCCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCcccccccccccccc
Confidence            999987654 9999999999999999976432                                                


Q ss_pred             ----------------CCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          180 ----------------PTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       180 ----------------~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                                      ..+++..++.++.|++.||.|||.        |++|||++.++.+||+|||+++.+...
T Consensus       172 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~  246 (359)
T 3vhe_A          172 SLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKD  246 (359)
T ss_dssp             ------------CTTTTCBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCGGGSCTTSC
T ss_pred             ccchhhhcccccchhccccCHHHHHHHHHHHHHHHHHHHHCCcccCCCChhhEEEcCCCcEEEEeccceeeeccc
Confidence                            128899999999999999999986        468999999999999999999977543

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=99.92  E-value=2.7e-24  Score=176.92  Aligned_cols=132  Identities=26%  Similarity=0.338  Sum_probs=116.1

Q ss_pred             HhCCCCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEE
Q 039406           97 ATDGFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRML  160 (243)
Q Consensus        97 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~l  160 (243)
                      ..++|.+.+.||+|+||.||+|....+.+                ..+.+.+|+.++++++|+||+++++++.+.+..|+
T Consensus         9 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   88 (278)
T 3cok_A            9 KIEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNYVYL   88 (278)
T ss_dssp             SGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSEEEE
T ss_pred             ccccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCeEEE
Confidence            34679999999999999999998754321                23678899999999999999999999999999999


Q ss_pred             EEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          161 VYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       161 v~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      ||||+++++|.+++..... .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||++.....
T Consensus        89 v~e~~~~~~L~~~l~~~~~-~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~  164 (278)
T 3cok_A           89 VLEMCHNGEMNRYLKNRVK-PFSENEARHFMHQIITGMLYLHSHGILHRDLTLSNLLLTRNMNIKIADFGLATQLKM  164 (278)
T ss_dssp             EEECCTTEEHHHHHHTCSS-CCCHHHHHHHHHHHHHHHHHHHHTTEECSSCCGGGEEECTTCCEEECCCTTCEECC-
T ss_pred             EEecCCCCcHHHHHhhccC-CCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCCEEEEeecceeeccC
Confidence            9999999999999976533 58999999999999999999986        46899999999999999999998754

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=99.91  E-value=1.6e-24  Score=181.30  Aligned_cols=132  Identities=20%  Similarity=0.229  Sum_probs=111.3

Q ss_pred             HhCCCCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEE
Q 039406           97 ATDGFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRML  160 (243)
Q Consensus        97 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~l  160 (243)
                      ..++|.+.+.||+|+||.||+|....+.+                ..+.+.+|+.++++++|+||+++++++...+.+|+
T Consensus        32 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~l  111 (309)
T 2h34_A           32 QFGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDGQLYV  111 (309)
T ss_dssp             --CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEE
T ss_pred             EeccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCCeEEE
Confidence            34889999999999999999998654321                24678899999999999999999999999999999


Q ss_pred             EEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          161 VYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       161 v~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      ||||+++++|.+++....  .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++.....
T Consensus       112 v~e~~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~  187 (309)
T 2h34_A          112 DMRLINGVDLAAMLRRQG--PLAPPRAVAIVRQIGSALDAAHAAGATHRDVKPENILVSADDFAYLVDFGIASATTDE  187 (309)
T ss_dssp             EEECCCCEEHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECSCCC-------
T ss_pred             EEEecCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCcCCcCCCChHHEEEcCCCCEEEecCccCcccccc
Confidence            999999999999997644  48999999999999999999986        458999999999999999999877544

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.91  E-value=1.2e-24  Score=199.98  Aligned_cols=144  Identities=23%  Similarity=0.288  Sum_probs=122.2

Q ss_pred             HhCCCCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhc-CCCccceEEEEEEeCCeeE
Q 039406           97 ATDGFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRV-HHKHLVSLVGYYTAGSQRM  159 (243)
Q Consensus        97 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~~~  159 (243)
                      ..++|.++++||+|+||.||+|+.+.+.+                ..+.+.+|..+|..+ +|+||+++++++.+.+.+|
T Consensus       339 ~~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~~  418 (674)
T 3pfq_A          339 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLY  418 (674)
T ss_dssp             -CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSEEE
T ss_pred             cccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCEEE
Confidence            35789999999999999999998776532                235678899999988 7999999999999999999


Q ss_pred             EEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCC
Q 039406          160 LVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVN  231 (243)
Q Consensus       160 lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~  231 (243)
                      |||||+.+|+|.+++...+  .+++..++.++.||+.||.|||.        |++||||+.++++||+|||+|+......
T Consensus       419 lV~E~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~gIiHrDLKp~NILl~~~g~ikL~DFGla~~~~~~~  496 (674)
T 3pfq_A          419 FVMEYVNGGDLMYHIQQVG--RFKEPHAVFYAAEIAIGLFFLQSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDG  496 (674)
T ss_dssp             EEEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTSEECCCCCSTTEEECSSSCEEECCCTTCEECCCTT
T ss_pred             EEEeCcCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCCeEeccCChhhEEEcCCCcEEEeecceeeccccCC
Confidence            9999999999999997654  49999999999999999999986        5799999999999999999999754333


Q ss_pred             ceeeeccccccC
Q 039406          232 THVSTRVMGTFG  243 (243)
Q Consensus       232 ~~~~~~~~GT~G  243 (243)
                      . .....+||++
T Consensus       497 ~-~~~~~~GT~~  507 (674)
T 3pfq_A          497 V-TTKTFCGTPD  507 (674)
T ss_dssp             C-CBCCCCSCSS
T ss_pred             c-ccccccCCCc
Confidence            2 2345678763

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=99.91  E-value=4.1e-24  Score=180.30  Aligned_cols=126  Identities=21%  Similarity=0.279  Sum_probs=108.8

Q ss_pred             cceeeecCceEEEEEEecCCch----------hHHHHHHHHHHHHhcC-CCccceEEEEEEeCCeeEEEEeccCCCCHHH
Q 039406          104 ANLLRQDGFGYVHRGVLPNGKE----------GEREFQAEVEIISRVH-HKHLVSLVGYYTAGSQRMLVYEFVLNNTLVF  172 (243)
Q Consensus       104 ~~~lg~G~~g~V~~~~~~~~~~----------~~~~~~~E~~~l~~l~-hp~iv~~~~~~~~~~~~~lv~e~~~~g~L~~  172 (243)
                      .+.||+|+||.||+|++..+.+          ....+.+|+.+|+.+. |+||+++++++.+.+..|+|||||++|+|.+
T Consensus        16 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~   95 (325)
T 3kn6_A           16 DKPLGEGSFSICRKCVHKKSNQAFAVKIISKRMEANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELLNGGELFE   95 (325)
T ss_dssp             SCCSEEETTEEEEEEEETTTCCEEEEEEEEGGGHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCCSCBHHH
T ss_pred             CCccccCCCeEEEEEEECCCCCEEEEEEEChhhhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEEEEEEccCCCcHHH
Confidence            4789999999999998875432          4567889999999997 9999999999999999999999999999999


Q ss_pred             HhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCC---cEEEeccCCceecCCCC
Q 039406          173 HLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKF---EAKVADFGLAKIASDVN  231 (243)
Q Consensus       173 ~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~---~~kl~DFG~a~~~~~~~  231 (243)
                      ++....  .+++..++.++.|++.||.|||.        +++|||++.++   .+||+|||+++......
T Consensus        96 ~l~~~~--~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~  163 (325)
T 3kn6_A           96 RIKKKK--HFSETEASYIMRKLVSAVSHMHDVGVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDN  163 (325)
T ss_dssp             HHHHCS--CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEEC----CEEEECCCTTCEECCC--
T ss_pred             HHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCHHHEEEecCCCcccEEEeccccceecCCCC
Confidence            997654  49999999999999999999986        56899997665   89999999999765443

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=99.91  E-value=1.3e-24  Score=180.10  Aligned_cols=129  Identities=23%  Similarity=0.309  Sum_probs=112.8

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch--------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEec
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE--------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEF  164 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~--------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  164 (243)
                      ++|.+.+.||+|+||.||+|....++.              ..+.+.+|+.+|++++||||+++++++.+.+.+|+||||
T Consensus         2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   81 (288)
T 1ob3_A            2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEH   81 (288)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred             ccchhhhhcccCCCEEEEEEEcCCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEEEEe
Confidence            578999999999999999998743321              246788999999999999999999999999999999999


Q ss_pred             cCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          165 VLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       165 ~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      +.+ +|.+++..... .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++.+..
T Consensus        82 ~~~-~l~~~~~~~~~-~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~  152 (288)
T 1ob3_A           82 LDQ-DLKKLLDVCEG-GLESVTAKSFLLQLLNGIAYCHDRRVLHRDLKPQNLLINREGELKIADFGLARAFGI  152 (288)
T ss_dssp             CSE-EHHHHHHTSTT-CCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC
T ss_pred             cCC-CHHHHHHhccc-CCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCCEEEeECccccccCc
Confidence            976 99988875433 58999999999999999999986        56899999999999999999987654

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=99.91  E-value=1.9e-24  Score=180.61  Aligned_cols=134  Identities=21%  Similarity=0.331  Sum_probs=116.1

Q ss_pred             hCCCCccceeeecCceEEEEEEecCC-------------------chhHHHHHHHHHHHHhcCCCccceEEEEEEeCCee
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNG-------------------KEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQR  158 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~-------------------~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~  158 (243)
                      .++|.+.+.||+|+||.||+|.....                   ....+.+.+|+.+|++++||||+++++++.+.+..
T Consensus        22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~  101 (314)
T 2ivs_A           22 RKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGPL  101 (314)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSC
T ss_pred             hhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEEEecCCce
Confidence            46789999999999999999975321                   12457789999999999999999999999999999


Q ss_pred             EEEEeccCCCCHHHHhccCCC----------------------CCCCHHHHHHHHHHHHHhhhHhhc--------CCCcE
Q 039406          159 MLVYEFVLNNTLVFHLHGKGQ----------------------PTMDWPTRIKIALGSAKGLAYLHD--------DLANI  208 (243)
Q Consensus       159 ~lv~e~~~~g~L~~~l~~~~~----------------------~~l~~~~~~~i~~~i~~~l~~lH~--------~~~Ni  208 (243)
                      |+||||+++++|.+++.....                      ..+++..++.++.|++.||.|||.        +++||
T Consensus       102 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dikp~NI  181 (314)
T 2ivs_A          102 LLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEMKLVHRDLAARNI  181 (314)
T ss_dssp             EEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGE
T ss_pred             EEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHHHCCCcccccchheE
Confidence            999999999999999976432                      237899999999999999999987        56899


Q ss_pred             EECCCCcEEEeccCCceecCCCC
Q 039406          209 LLDFKFEAKVADFGLAKIASDVN  231 (243)
Q Consensus       209 Ll~~~~~~kl~DFG~a~~~~~~~  231 (243)
                      |++.++.+||+|||+++.+....
T Consensus       182 li~~~~~~kl~Dfg~~~~~~~~~  204 (314)
T 2ivs_A          182 LVAEGRKMKISDFGLSRDVYEED  204 (314)
T ss_dssp             EEETTTEEEECCCTTCEECTTTS
T ss_pred             EEcCCCCEEEccccccccccccc
Confidence            99999999999999999875543

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=99.91  E-value=1.8e-24  Score=178.17  Aligned_cols=130  Identities=27%  Similarity=0.348  Sum_probs=114.5

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEE
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLV  161 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv  161 (243)
                      .++|.+.+.||+|+||.||+|....+..                ....+.+|+.++++++|+||+++++++.+.+..++|
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   87 (279)
T 3fdn_A            8 LEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLI   87 (279)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             cccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecCCEEEEE
Confidence            4789999999999999999998776532                245688999999999999999999999999999999


Q ss_pred             EeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          162 YEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       162 ~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      |||+++++|.+++....  .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||++.....
T Consensus        88 ~e~~~~~~l~~~l~~~~--~~~~~~~~~~~~qi~~~l~~LH~~~i~H~dlkp~Nili~~~~~~~l~Dfg~~~~~~~  161 (279)
T 3fdn_A           88 LEYAPLGTVYRELQKLS--KFDEQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPS  161 (279)
T ss_dssp             ECCCTTEEHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHTTTCEECCCCGGGEEECTTSCEEECSCCEESCC--
T ss_pred             EecCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCCEecccCChHhEEEcCCCCEEEEeccccccCCc
Confidence            99999999999987654  48999999999999999999987        46899999999999999999876543

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=99.91  E-value=1.5e-24  Score=182.55  Aligned_cols=130  Identities=26%  Similarity=0.367  Sum_probs=111.7

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc----------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCC----eeEEEEec
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK----------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGS----QRMLVYEF  164 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~----------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~----~~~lv~e~  164 (243)
                      ++|.+.+.||+|+||.||+|++.+..          .....+.+|+.+|++++|+||+++++++....    .+|+||||
T Consensus        24 ~~y~~~~~lg~G~~g~Vy~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~lv~e~  103 (322)
T 3soc_A           24 MPLQLLEVKARGRFGCVWKAQLLNEYVAVKIFPIQDKQSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWLITAF  103 (322)
T ss_dssp             EEEEEEEEEECSTTCEEEEEEETTEEEEEEEECGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEEC
T ss_pred             hhchhhheecccCceEEEEEEECCCEEEEEEeecCchHHHHHHHHHHHHhcCCCCCchhhcceeccCCCCCceEEEEEec
Confidence            67999999999999999999866432          13345567889999999999999999998744    47999999


Q ss_pred             cCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc------------------CCCcEEECCCCcEEEeccCCcee
Q 039406          165 VLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD------------------DLANILLDFKFEAKVADFGLAKI  226 (243)
Q Consensus       165 ~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~------------------~~~NiLl~~~~~~kl~DFG~a~~  226 (243)
                      |++|+|.+++...   .+++..++.++.|++.||.|||.                  |++|||++.++.+||+|||+|+.
T Consensus       104 ~~~g~L~~~l~~~---~~~~~~~~~i~~qi~~al~~LH~~~~~l~~~~~~~ivH~Dlkp~Nill~~~~~~kL~DFg~a~~  180 (322)
T 3soc_A          104 HEKGSLSDFLKAN---VVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLALK  180 (322)
T ss_dssp             CTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHTCCEEEETTEEECEEECSCCSGGGEEECTTCCEEECCCTTCEE
T ss_pred             CCCCCHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHhhccccccccCCCEEeCCCChHhEEECCCCeEEEccCCcccc
Confidence            9999999999764   38999999999999999999985                  35899999999999999999988


Q ss_pred             cCCCC
Q 039406          227 ASDVN  231 (243)
Q Consensus       227 ~~~~~  231 (243)
                      +....
T Consensus       181 ~~~~~  185 (322)
T 3soc_A          181 FEAGK  185 (322)
T ss_dssp             ECTTS
T ss_pred             ccccc
Confidence            76543

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=99.91  E-value=1.3e-24  Score=183.38  Aligned_cols=131  Identities=22%  Similarity=0.366  Sum_probs=113.3

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc------------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK------------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRML  160 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~------------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~l  160 (243)
                      ++|...+.||+|+||.||+|++..+.                  ...+.+.+|+.+|++++|+||+++++++.+.+ .++
T Consensus        15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-~~~   93 (327)
T 3poz_A           15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQL   93 (327)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEESSS-EEE
T ss_pred             HHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCC-eEE
Confidence            67999999999999999999864332                  24567899999999999999999999998754 789


Q ss_pred             EEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCC
Q 039406          161 VYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVN  231 (243)
Q Consensus       161 v~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~  231 (243)
                      ||||+.+|+|.+++..... .+++..++.++.|++.||.|||.        |++|||++.++.+||+|||+|+.+....
T Consensus        94 v~e~~~~g~L~~~l~~~~~-~~~~~~~~~~~~qi~~~l~~LH~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~  171 (327)
T 3poz_A           94 ITQLMPFGCLLDYVREHKD-NIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEE  171 (327)
T ss_dssp             EEECCTTCBHHHHHHHSTT-SCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEETTEEEECCTTHHHHHTTTC
T ss_pred             EEEecCCCcHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHhhCCeeCCCCChheEEECCCCCEEEccCcceeEccCCc
Confidence            9999999999999976543 58999999999999999999986        5689999999999999999999875543

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=99.91  E-value=6.3e-25  Score=188.92  Aligned_cols=131  Identities=24%  Similarity=0.393  Sum_probs=114.6

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCc--------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEe
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGK--------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYE  163 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~--------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e  163 (243)
                      .++|.+.+.||+|+||.||+|.+..+.              ...+.+.+|+.+|++++||||+++++++...+.+|+|||
T Consensus       113 ~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e  192 (377)
T 3cbl_A          113 HEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVME  192 (377)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSSCEEEEE
T ss_pred             hHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCCcEEEEE
Confidence            367888999999999999999876432              123567899999999999999999999999999999999


Q ss_pred             ccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          164 FVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       164 ~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      ||++|+|.+++...+. .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++...+
T Consensus       193 ~~~~g~L~~~l~~~~~-~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nil~~~~~~~kl~DfG~s~~~~~  265 (377)
T 3cbl_A          193 LVQGGDFLTFLRTEGA-RLRVKTLLQMVGDAAAGMEYLESKCCIHRDLAARNCLVTEKNVLKISDFGMSREEAD  265 (377)
T ss_dssp             CCTTCBHHHHHHHHGG-GCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCGGGCEECTT
T ss_pred             cCCCCCHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHHHCCcCCcccCHHHEEEcCCCcEEECcCCCceecCC
Confidence            9999999999975433 48999999999999999999976        45899999999999999999987644

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=99.91  E-value=1.1e-24  Score=184.61  Aligned_cols=136  Identities=21%  Similarity=0.258  Sum_probs=114.0

Q ss_pred             HHHHhCCCCccceeeecCceEEEEEEecCCch------------------hHHHHHHHHHHHHhcCCCccceEEEEEEeC
Q 039406           94 LARATDGFSDANLLRQDGFGYVHRGVLPNGKE------------------GEREFQAEVEIISRVHHKHLVSLVGYYTAG  155 (243)
Q Consensus        94 ~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~------------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~  155 (243)
                      +....++|.+.+.||+|+||.||+|+...+..                  ..+.+.+|+.+|++++||||+++++++.+.
T Consensus        21 ~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~  100 (345)
T 3hko_A           21 LLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYEDE  100 (345)
T ss_dssp             HHHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEECS
T ss_pred             hhhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhccC
Confidence            34566889999999999999999998755422                  346788999999999999999999999999


Q ss_pred             CeeEEEEeccCCCCHHHHhccCC--------------------------------------CCCCCHHHHHHHHHHHHHh
Q 039406          156 SQRMLVYEFVLNNTLVFHLHGKG--------------------------------------QPTMDWPTRIKIALGSAKG  197 (243)
Q Consensus       156 ~~~~lv~e~~~~g~L~~~l~~~~--------------------------------------~~~l~~~~~~~i~~~i~~~  197 (243)
                      +..|+|||||++|+|.+++....                                      ...+++..++.++.|++.|
T Consensus       101 ~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~  180 (345)
T 3hko_A          101 QYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSA  180 (345)
T ss_dssp             SEEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHH
Confidence            99999999999999999885210                                      1113567788899999999


Q ss_pred             hhHhhc--------CCCcEEECCCC--cEEEeccCCceecCC
Q 039406          198 LAYLHD--------DLANILLDFKF--EAKVADFGLAKIASD  229 (243)
Q Consensus       198 l~~lH~--------~~~NiLl~~~~--~~kl~DFG~a~~~~~  229 (243)
                      |.|||.        +++|||++.++  .+||+|||+++.+..
T Consensus       181 l~~LH~~~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~  222 (345)
T 3hko_A          181 LHYLHNQGICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYK  222 (345)
T ss_dssp             HHHHHHTTEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGG
T ss_pred             HHHHHHCCccccCCChhhEEEecCCCceEEEeeccccccccc
Confidence            999976        46899998776  899999999997643

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=99.91  E-value=3.8e-24  Score=190.69  Aligned_cols=142  Identities=23%  Similarity=0.314  Sum_probs=118.3

Q ss_pred             HhCCCCccceeeecCceEEEEEEecCCc--------------------------hhHHHHHHHHHHHHhcCCCccceEEE
Q 039406           97 ATDGFSDANLLRQDGFGYVHRGVLPNGK--------------------------EGEREFQAEVEIISRVHHKHLVSLVG  150 (243)
Q Consensus        97 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~--------------------------~~~~~~~~E~~~l~~l~hp~iv~~~~  150 (243)
                      ..++|.+.+.||+|+||.||+|..+.+.                          ...+.+.+|+.+|++++||||+++++
T Consensus        34 i~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~  113 (504)
T 3q5i_A           34 IGESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFD  113 (504)
T ss_dssp             GGGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEE
T ss_pred             cccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEE
Confidence            4578999999999999999999866532                          12467889999999999999999999


Q ss_pred             EEEeCCeeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCC---cEEEe
Q 039406          151 YYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKF---EAKVA  219 (243)
Q Consensus       151 ~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~---~~kl~  219 (243)
                      ++.+.+.+|+|||||.+|+|.+++....  .+++..++.++.|++.||.|||.        +|+|||++.++   .+||+
T Consensus       114 ~~~~~~~~~lv~e~~~gg~L~~~l~~~~--~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~  191 (504)
T 3q5i_A          114 VFEDKKYFYLVTEFYEGGELFEQIINRH--KFDECDAANIMKQILSGICYLHKHNIVHRDIKPENILLENKNSLLNIKIV  191 (504)
T ss_dssp             EEECSSEEEEEEECCTTCBHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESSTTCCSSEEEC
T ss_pred             EEEcCCEEEEEEecCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCcHHHEEEecCCCCccEEEE
Confidence            9999999999999999999999887654  48999999999999999999986        56899998775   69999


Q ss_pred             ccCCceecCCCCceeeecccccc
Q 039406          220 DFGLAKIASDVNTHVSTRVMGTF  242 (243)
Q Consensus       220 DFG~a~~~~~~~~~~~~~~~GT~  242 (243)
                      |||+|+.+.....  ....+||+
T Consensus       192 Dfg~a~~~~~~~~--~~~~~gt~  212 (504)
T 3q5i_A          192 DFGLSSFFSKDYK--LRDRLGTA  212 (504)
T ss_dssp             CCTTCEECCTTSC--BCCCCSCT
T ss_pred             ECCCCEEcCCCCc--cccccCCc
Confidence            9999998765432  22345664

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=99.91  E-value=4.5e-25  Score=194.28  Aligned_cols=132  Identities=25%  Similarity=0.391  Sum_probs=114.7

Q ss_pred             HhCCCCccceeeecCceEEEEEEecCCc-----------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEecc
Q 039406           97 ATDGFSDANLLRQDGFGYVHRGVLPNGK-----------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFV  165 (243)
Q Consensus        97 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~-----------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~  165 (243)
                      ..++|.+.+.||+|+||.||+|.+..+.           ...+.+.+|+.+|++++|+||+++++++. .+.+|||||||
T Consensus       186 ~~~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~iv~l~~~~~-~~~~~lv~e~~  264 (454)
T 1qcf_A          186 PRESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGSMSVEAFLAEANVMKTLQHDKLVKLHAVVT-KEPIYIITEFM  264 (454)
T ss_dssp             CGGGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTTSBCHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEEECCC
T ss_pred             chHHeEEEEEcccCCceEEEEEEECCccEEEEEEecCCCccHHHHHHHHHHHhhCCCCCEeeEEEEEe-CCccEEEEeec
Confidence            3467889999999999999999875432           24678999999999999999999999986 66799999999


Q ss_pred             CCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          166 LNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       166 ~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      .+|+|.+++.......+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++.+..
T Consensus       265 ~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~  336 (454)
T 1qcf_A          265 AKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRDLRAANILVSASLVCKIADFGLARVIED  336 (454)
T ss_dssp             TTCBHHHHHHSHHHHTCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCSGGGEEECTTCCEEECSTTGGGGBCC
T ss_pred             CCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCCHHHEEECCCCcEEEeeCCCceEcCC
Confidence            99999999975433348889999999999999999976        45899999999999999999987654

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=99.91  E-value=1.4e-24  Score=184.64  Aligned_cols=143  Identities=21%  Similarity=0.263  Sum_probs=117.1

Q ss_pred             HhCCCCccceeeecCceEEEEEEecCCch---------hHHHHHHHHHHHHhc-CCCccceEEEEEEeCCeeEEEEeccC
Q 039406           97 ATDGFSDANLLRQDGFGYVHRGVLPNGKE---------GEREFQAEVEIISRV-HHKHLVSLVGYYTAGSQRMLVYEFVL  166 (243)
Q Consensus        97 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~---------~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~~~lv~e~~~  166 (243)
                      ..++|.+.+.||+|+||.||+|+.+.+.+         ......+|+++|.++ +||||+++++++.+.+.+|+|||||+
T Consensus        20 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~~~   99 (342)
T 2qr7_A           20 FTDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKRDPTEEIEILLRYGQHPNIITLKDVYDDGKYVYVVTELMK   99 (342)
T ss_dssp             HHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTCCCHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCCC
T ss_pred             ccccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccCChHHHHHHHHHhcCCCCcCeEEEEEEcCCEEEEEEeCCC
Confidence            35679999999999999999998775432         123456799999888 79999999999999999999999999


Q ss_pred             CCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCC----CcEEEeccCCceecCCCCcee
Q 039406          167 NNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFK----FEAKVADFGLAKIASDVNTHV  234 (243)
Q Consensus       167 ~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~----~~~kl~DFG~a~~~~~~~~~~  234 (243)
                      +|+|.+++...+  .+++..++.++.|++.||.|||.        +++|||+..+    +.+||+|||+++.+...... 
T Consensus       100 gg~L~~~i~~~~--~~~~~~~~~~~~qi~~al~~lH~~givHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~~~~~~~~~-  176 (342)
T 2qr7_A          100 GGELLDKILRQK--FFSEREASAVLFTITKTVEYLHAQGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAENGL-  176 (342)
T ss_dssp             SCBHHHHHHTCT--TCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEESSSSCSGGGEEECCCTTCEECBCTTCC-
T ss_pred             CCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCcEeccCCHHHEEEecCCCCcCeEEEEECCCcccCcCCCCc-
Confidence            999999997654  48999999999999999999986        5689998433    35999999999987654332 


Q ss_pred             eecccccc
Q 039406          235 STRVMGTF  242 (243)
Q Consensus       235 ~~~~~GT~  242 (243)
                      ....+||+
T Consensus       177 ~~~~~gt~  184 (342)
T 2qr7_A          177 LMTPCYTA  184 (342)
T ss_dssp             BCCSSCCS
T ss_pred             eeccCCCc
Confidence            22345664

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=99.91  E-value=2e-24  Score=177.78  Aligned_cols=133  Identities=26%  Similarity=0.388  Sum_probs=114.9

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCc-----------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccC
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGK-----------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVL  166 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~-----------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~  166 (243)
                      .++|.+.+.||+|+||.||+|.+..+.           ...+.+.+|+++|++++|+||+++++++. .+..++||||+.
T Consensus        12 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v~e~~~   90 (279)
T 1qpc_A           12 RETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVT-QEPIYIITEYME   90 (279)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEEEEECCT
T ss_pred             HHhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCCcccHHHHHHHHHHHHhCCCcCcceEEEEEc-CCCcEEEEecCC
Confidence            467899999999999999999865442           14577899999999999999999999876 456899999999


Q ss_pred             CCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCC
Q 039406          167 NNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVN  231 (243)
Q Consensus       167 ~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~  231 (243)
                      +++|.+++.......+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++......
T Consensus        91 ~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~  163 (279)
T 1qpc_A           91 NGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNE  163 (279)
T ss_dssp             TCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECSSSC
T ss_pred             CCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHhhEEEcCCCCEEECCCcccccccCcc
Confidence            9999999975432248999999999999999999986        4689999999999999999999876543

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=99.91  E-value=1.8e-24  Score=184.52  Aligned_cols=140  Identities=21%  Similarity=0.273  Sum_probs=119.4

Q ss_pred             ccHHHHHHHhCCCCccceeeecCceEEEEEEecCCch------------hHHHHHHHHHHHHhcC-----CCccceEEEE
Q 039406           89 FTYEELARATDGFSDANLLRQDGFGYVHRGVLPNGKE------------GEREFQAEVEIISRVH-----HKHLVSLVGY  151 (243)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~------------~~~~~~~E~~~l~~l~-----hp~iv~~~~~  151 (243)
                      +++.+.....++|.+.+.||+|+||.||+|++..+.+            ....+.+|+.+|+.++     |+||++++++
T Consensus        25 ~~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~e~~~l~~l~~~~~~h~~iv~~~~~  104 (360)
T 3llt_A           25 FSWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNIKKYTRSAKIEADILKKIQNDDINNNNIVKYHGK  104 (360)
T ss_dssp             CCCCTTCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCHHHHHHHHHHHHHHHHTCCCSTTGGGBCCEEEE
T ss_pred             eeeecceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccchhhhhhhHHHHHHHHHhcccCCCCCCeecccce
Confidence            3334444556899999999999999999998755432            3456788999999986     9999999999


Q ss_pred             EEeCCeeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECC-----------
Q 039406          152 YTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDF-----------  212 (243)
Q Consensus       152 ~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~-----------  212 (243)
                      +...+..|+||||+ +++|.+++.......+++..++.++.|++.||.|||.        |++|||++.           
T Consensus       105 ~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~~~~~~~~  183 (360)
T 3llt_A          105 FMYYDHMCLIFEPL-GPSLYEIITRNNYNGFHIEDIKLYCIEILKALNYLRKMSLTHTDLKPENILLDDPYFEKSLITVR  183 (360)
T ss_dssp             EEETTEEEEEECCC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCTTCCEEEEEEE
T ss_pred             eeECCeeEEEEcCC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCcccEEEccccccccccchh
Confidence            99999999999999 8899999987665569999999999999999999976        568999975           


Q ss_pred             --------------CCcEEEeccCCceecCC
Q 039406          213 --------------KFEAKVADFGLAKIASD  229 (243)
Q Consensus       213 --------------~~~~kl~DFG~a~~~~~  229 (243)
                                    ++.+||+|||+|+....
T Consensus       184 ~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~  214 (360)
T 3llt_A          184 RVTDGKKIQIYRTKSTGIKLIDFGCATFKSD  214 (360)
T ss_dssp             CTTTCCEEEEEEESCCCEEECCCTTCEETTS
T ss_pred             cccccccccccccCCCCEEEEeccCceecCC
Confidence                          78999999999997654

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=99.91  E-value=5.9e-24  Score=176.58  Aligned_cols=132  Identities=23%  Similarity=0.330  Sum_probs=111.1

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCc--------hhHHHHHHHHHHHHh--cCCCccceEEEEEEe----CCeeEEEEe
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGK--------EGEREFQAEVEIISR--VHHKHLVSLVGYYTA----GSQRMLVYE  163 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~--------~~~~~~~~E~~~l~~--l~hp~iv~~~~~~~~----~~~~~lv~e  163 (243)
                      .++|.+.+.||+|+||.||+|++....        .....+.+|.+++..  ++|+||+++++++..    .+.+|+|||
T Consensus         7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~vavK~~~~~~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~~~~lv~e   86 (301)
T 3q4u_A            7 ARDITLLECVGKGRYGEVWRGSWQGENVAVKIFSSRDEKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLWLITH   86 (301)
T ss_dssp             GGGCEEEEEEEECSSEEEEEEEETTEEEEEEEECGGGHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEEEEEEEEC
T ss_pred             cCcEEEEEeeccCCCcEEEEEEECCEEEEEEEeccccchhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCceeEEehh
Confidence            478999999999999999999874332        245566777777776  799999999998654    346899999


Q ss_pred             ccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhh--------c--------CCCcEEECCCCcEEEeccCCceec
Q 039406          164 FVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLH--------D--------DLANILLDFKFEAKVADFGLAKIA  227 (243)
Q Consensus       164 ~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH--------~--------~~~NiLl~~~~~~kl~DFG~a~~~  227 (243)
                      |+++|+|.+++...   .+++..++.++.|++.||.|||        .        |++|||++.++.+||+|||+|+..
T Consensus        87 ~~~~g~L~~~l~~~---~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~Nill~~~~~~kl~Dfg~a~~~  163 (301)
T 3q4u_A           87 YHEMGSLYDYLQLT---TLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMH  163 (301)
T ss_dssp             CCTTCBHHHHHTTC---CBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCCTTCEEE
T ss_pred             hccCCCHHHHHhhc---ccCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCeecCCCChHhEEEcCCCCEEEeeCCCeeec
Confidence            99999999999543   4899999999999999999999        5        568999999999999999999887


Q ss_pred             CCCCc
Q 039406          228 SDVNT  232 (243)
Q Consensus       228 ~~~~~  232 (243)
                      .....
T Consensus       164 ~~~~~  168 (301)
T 3q4u_A          164 SQSTN  168 (301)
T ss_dssp             ETTTT
T ss_pred             ccccc
Confidence            55443

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=99.91  E-value=1.7e-24  Score=179.09  Aligned_cols=133  Identities=20%  Similarity=0.255  Sum_probs=112.3

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCc--------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEe
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGK--------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYE  163 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~--------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e  163 (243)
                      .++|.+.+.||+|+||.||++....+.              ...+.+.+|+++|++++|+||+++++++.+.+..|+|||
T Consensus        21 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e  100 (285)
T 3is5_A           21 DDLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIVME  100 (285)
T ss_dssp             HHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred             hhheeecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHheecCCeEEEEEE
Confidence            367999999999999999999865432              135788999999999999999999999999999999999


Q ss_pred             ccCCCCHHHHhccC--CCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEE---CCCCcEEEeccCCceecCCC
Q 039406          164 FVLNNTLVFHLHGK--GQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILL---DFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       164 ~~~~g~L~~~l~~~--~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl---~~~~~~kl~DFG~a~~~~~~  230 (243)
                      |+++++|.+++...  ....+++..++.++.|++.||.|||.        +++|||+   +.++.+||+|||+++.+...
T Consensus       101 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~~~~~~  180 (285)
T 3is5_A          101 TCEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFHSQHVVHKDLKPENILFQDTSPHSPIKIIDFGLAELFKSD  180 (285)
T ss_dssp             CCSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEESSSSTTCCEEECCCCCCCC----
T ss_pred             eCCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHHhCCEEECCCCHHHEEEecCCCCCCEEEEeeecceecCCc
Confidence            99999999988542  12358999999999999999999986        4589999   45688999999999876543

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=99.91  E-value=2e-24  Score=185.66  Aligned_cols=138  Identities=22%  Similarity=0.305  Sum_probs=110.0

Q ss_pred             CccceeeecCceEEEEEEecCCc-------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccCCC
Q 039406          102 SDANLLRQDGFGYVHRGVLPNGK-------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNN  168 (243)
Q Consensus       102 ~~~~~lg~G~~g~V~~~~~~~~~-------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~g  168 (243)
                      ...+.||+|+||.||+|....+.             ...+.+.+|+.+|++++|+||+++++++.+.+.+|||||||+++
T Consensus        92 ~~~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E~~~~~  171 (373)
T 2x4f_A           92 SKTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDGG  171 (373)
T ss_dssp             EEEEECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTC
T ss_pred             ecceEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCCCC
Confidence            33678999999999999865432             24567899999999999999999999999999999999999999


Q ss_pred             CHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEE--CCCCcEEEeccCCceecCCCCceeeecc
Q 039406          169 TLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILL--DFKFEAKVADFGLAKIASDVNTHVSTRV  238 (243)
Q Consensus       169 ~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl--~~~~~~kl~DFG~a~~~~~~~~~~~~~~  238 (243)
                      +|.+++..... .+++..++.++.|++.||.|||.        +++|||+  +.++.+||+|||+++.+.....  ....
T Consensus       172 ~L~~~l~~~~~-~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~~~--~~~~  248 (373)
T 2x4f_A          172 ELFDRIIDESY-NLTELDTILFMKQICEGIRHMHQMYILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPREK--LKVN  248 (373)
T ss_dssp             EEHHHHHHTGG-GCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEEETTTTEEEECCCSSCEECCTTCB--CCCC
T ss_pred             cHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHHHCCcccccCCHHHEEEecCCCCcEEEEeCCCceecCCccc--cccc
Confidence            99988865432 48999999999999999999976        4689999  6678999999999998765432  1223


Q ss_pred             cccc
Q 039406          239 MGTF  242 (243)
Q Consensus       239 ~GT~  242 (243)
                      +||+
T Consensus       249 ~gt~  252 (373)
T 2x4f_A          249 FGTP  252 (373)
T ss_dssp             CSSC
T ss_pred             cCCC
Confidence            5654

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=99.91  E-value=2.5e-24  Score=191.37  Aligned_cols=141  Identities=19%  Similarity=0.273  Sum_probs=115.8

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCch---------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEE
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGKE---------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVY  162 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~---------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  162 (243)
                      .++|.+.+.||+|+||.||+|+.+.+..               ....+.+|+.+|+.++||||++++++|.+.+.+|+||
T Consensus        36 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~  115 (494)
T 3lij_A           36 SEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLVM  115 (494)
T ss_dssp             HHHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hcCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence            3579999999999999999998764421               3467889999999999999999999999999999999


Q ss_pred             eccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCC---CcEEEeccCCceecCCCC
Q 039406          163 EFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFK---FEAKVADFGLAKIASDVN  231 (243)
Q Consensus       163 e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~---~~~kl~DFG~a~~~~~~~  231 (243)
                      |||.+|+|.+++....  .+++..++.++.|++.||.|||.        +|+|||++..   +.+||+|||+|+.+....
T Consensus       116 e~~~~g~L~~~~~~~~--~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~~~~~~~  193 (494)
T 3lij_A          116 ECYKGGELFDEIIHRM--KFNEVDAAVIIKQVLSGVTYLHKHNIVHRDLKPENLLLESKEKDALIKIVDFGLSAVFENQK  193 (494)
T ss_dssp             ECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCSSTTCCEEECCCTTCEECBTTB
T ss_pred             ecCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCceeccCChhhEEEeCCCCCCcEEEEECCCCeECCCCc
Confidence            9999999999886554  48999999999999999999986        5689999764   559999999999876543


Q ss_pred             ceeeecccccc
Q 039406          232 THVSTRVMGTF  242 (243)
Q Consensus       232 ~~~~~~~~GT~  242 (243)
                      .  ....+||+
T Consensus       194 ~--~~~~~gt~  202 (494)
T 3lij_A          194 K--MKERLGTA  202 (494)
T ss_dssp             C--BCCCCSCT
T ss_pred             c--ccccCCCc
Confidence            2  23345665

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=99.91  E-value=4.4e-24  Score=179.55  Aligned_cols=131  Identities=25%  Similarity=0.310  Sum_probs=116.0

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCch-------------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCee
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGKE-------------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQR  158 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~-------------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~  158 (243)
                      .++|.+.+.||+|+||.||+|+...+..                   ..+.+.+|+.+|++++|+||+++++++.+.+..
T Consensus        11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~   90 (321)
T 2a2a_A           11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRTDV   90 (321)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred             hccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEE
Confidence            3679999999999999999998764321                   356789999999999999999999999999999


Q ss_pred             EEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCC----cEEEeccCCcee
Q 039406          159 MLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKF----EAKVADFGLAKI  226 (243)
Q Consensus       159 ~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~----~~kl~DFG~a~~  226 (243)
                      |+||||+++++|.+++....  .+++..++.++.|++.||.|||.        +++|||++.++    .+||+|||+++.
T Consensus        91 ~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~aL~~lH~~~ivH~dikp~NIl~~~~~~~~~~~kl~Dfg~~~~  168 (321)
T 2a2a_A           91 VLILELVSGGELFDFLAQKE--SLSEEEATSFIKQILDGVNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHE  168 (321)
T ss_dssp             EEEECCCCSCBHHHHHHTCS--CEEHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCTTSSSCCEEECCCTTCEE
T ss_pred             EEEEEcCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCCeecCCCChHHEEEecCCCCcCCEEEccCcccee
Confidence            99999999999999997644  48999999999999999999976        46899999887    799999999998


Q ss_pred             cCCC
Q 039406          227 ASDV  230 (243)
Q Consensus       227 ~~~~  230 (243)
                      +...
T Consensus       169 ~~~~  172 (321)
T 2a2a_A          169 IEDG  172 (321)
T ss_dssp             CCTT
T ss_pred             cCcc
Confidence            7654

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=99.91  E-value=1.8e-24  Score=182.61  Aligned_cols=132  Identities=18%  Similarity=0.211  Sum_probs=114.1

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCch-----------hHHHHHHHHHHHHhc-CCCccceEEEEEEeCCeeEEEEecc
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGKE-----------GEREFQAEVEIISRV-HHKHLVSLVGYYTAGSQRMLVYEFV  165 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~-----------~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~~~lv~e~~  165 (243)
                      .++|.+.+.||+|+||.||+|+...+.+           ..+.+.+|+.+|+++ +|+||+++++++.+.+..|+||||+
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e~~   87 (330)
T 2izr_A            8 GPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSRAPQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMVLELL   87 (330)
T ss_dssp             TTTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTCSSCCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEEEEECC
T ss_pred             cCCeEEEEEeeccCCceEEEEEECCCCcEEEEEEeccccchHHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEEEEEeC
Confidence            3689999999999999999998654422           234688999999999 9999999999999999999999999


Q ss_pred             CCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCc-----EEEeccCCceecCCCC
Q 039406          166 LNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFE-----AKVADFGLAKIASDVN  231 (243)
Q Consensus       166 ~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~-----~kl~DFG~a~~~~~~~  231 (243)
                       +++|.+++..... .+++..++.++.|++.||.|||.        |++|||++.++.     +||+|||+|+.+....
T Consensus        88 -~~~L~~~~~~~~~-~~~~~~~~~i~~qi~~~l~~LH~~~iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~a~~~~~~~  164 (330)
T 2izr_A           88 -GPSLEDLFDLCDR-TFSLKTVLMIAIQLISRMEYVHSKNLIYRDVKPENFLIGRPGNKTQQVIHIIDFALAKEYIDPE  164 (330)
T ss_dssp             -CCBHHHHHHHTTT-CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECCGGGTCTTSEEECCCTTCEESBCTT
T ss_pred             -CCCHHHHHHHcCC-CCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeeeccCCCCCCceEEEEEcccceeeecCC
Confidence             9999999976433 59999999999999999999986        568999998887     9999999999875543

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=99.91  E-value=9.3e-25  Score=192.21  Aligned_cols=132  Identities=27%  Similarity=0.417  Sum_probs=111.7

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCc-----------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccC
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGK-----------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVL  166 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~-----------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~  166 (243)
                      .++|.+.+.||+|+||.||+|.+..+.           ...+.|.+|+.+|++++|+||+++++++.+ +.+|||||||.
T Consensus       183 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~~~iv~e~~~  261 (452)
T 1fmk_A          183 RESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTEYMS  261 (452)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEECCCT
T ss_pred             hhHceeeeeecCCCCeEEEEEEECCCceEEEEEeccCCCCHHHHHHHHHHHHhCCCCCEeeEEEEEcC-CceEEEehhhc
Confidence            367888999999999999999876542           135679999999999999999999999876 77899999999


Q ss_pred             CCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          167 NNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       167 ~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      +|+|.+++.......+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++.+...
T Consensus       262 ~gsL~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~  333 (452)
T 1fmk_A          262 KGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDN  333 (452)
T ss_dssp             TCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCCTTC-----
T ss_pred             CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChhhEEECCCCCEEECCCccceecCCC
Confidence            9999999975433358999999999999999999976        458999999999999999999987543

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=99.91  E-value=3.7e-24  Score=184.60  Aligned_cols=130  Identities=21%  Similarity=0.352  Sum_probs=105.5

Q ss_pred             HHhCCCCccceeeecCceEEEEEEecCCc---------------hhHHHHHHHHHHHHhcC-CCccceEEEEEEeCC--e
Q 039406           96 RATDGFSDANLLRQDGFGYVHRGVLPNGK---------------EGEREFQAEVEIISRVH-HKHLVSLVGYYTAGS--Q  157 (243)
Q Consensus        96 ~~~~~~~~~~~lg~G~~g~V~~~~~~~~~---------------~~~~~~~~E~~~l~~l~-hp~iv~~~~~~~~~~--~  157 (243)
                      ...++|.+.+.||+|+||.||+|.+..+.               ...+.+.+|+.+|+++. |+||+++++++...+  .
T Consensus         6 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~   85 (388)
T 3oz6_A            6 HVLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDRD   85 (388)
T ss_dssp             HHHTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSC
T ss_pred             cccCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCE
Confidence            45689999999999999999999865442               24566789999999997 999999999998654  7


Q ss_pred             eEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          158 RMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       158 ~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      +|+|||||+ ++|.+++...   .+++..+..++.|++.||.|||.        ||+|||++.++.+||+|||+|+.+..
T Consensus        86 ~~lv~e~~~-~~L~~~~~~~---~~~~~~~~~i~~qi~~~L~~LH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~  161 (388)
T 3oz6_A           86 VYLVFDYME-TDLHAVIRAN---ILEPVHKQYVVYQLIKVIKYLHSGGLLHRDMKPSNILLNAECHVKVADFGLSRSFVN  161 (388)
T ss_dssp             EEEEEECCS-EEHHHHHHHT---CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEESSS
T ss_pred             EEEEecccC-cCHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHhCCEEeCCCCHHHeEEcCCCCEEecCCcccccccc
Confidence            899999997 5999988753   48999999999999999999976        56899999999999999999997643

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=99.91  E-value=5.5e-24  Score=175.70  Aligned_cols=129  Identities=27%  Similarity=0.390  Sum_probs=115.3

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVY  162 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  162 (243)
                      ++|.+.+.||+|+||.||+|....+..                ..+.+.+|++++++++|+||+++++++.+.+..|+||
T Consensus        14 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   93 (284)
T 2vgo_A           14 DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYLML   93 (284)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCEEEEEE
Confidence            789999999999999999998765431                2457889999999999999999999999999999999


Q ss_pred             eccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          163 EFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       163 e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      ||+++++|.+++...+  .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||++.....
T Consensus        94 e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~  166 (284)
T 2vgo_A           94 EFAPRGELYKELQKHG--RFDEQRSATFMEELADALHYCHERKVIHRDIKPENLLMGYKGELKIADFGWSVHAPS  166 (284)
T ss_dssp             CCCTTEEHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEEECTTCCEEECCCTTCEECSS
T ss_pred             EeCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCceecCCCHHHEEEcCCCCEEEecccccccCcc
Confidence            9999999999987654  48999999999999999999987        45899999999999999999987654

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=99.91  E-value=3.2e-24  Score=178.20  Aligned_cols=131  Identities=27%  Similarity=0.362  Sum_probs=111.6

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc-----------------hhHHHHHHHHHHHHhcCCCccceEEEEEE-eCCeeEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK-----------------EGEREFQAEVEIISRVHHKHLVSLVGYYT-AGSQRML  160 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~-----------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~-~~~~~~l  160 (243)
                      ..|.+.+.||+|+||.||+|.+..+.                 ...+.+.+|+.+|++++|+||+++++++. .++..|+
T Consensus        25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~  104 (298)
T 3f66_A           25 LIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLV  104 (298)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEE
T ss_pred             eehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCCceEE
Confidence            45788899999999999999754321                 14567899999999999999999999864 5668899


Q ss_pred             EEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          161 VYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       161 v~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      ||||+.+++|.+++..... .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++.+...
T Consensus       105 v~e~~~~~~L~~~l~~~~~-~~~~~~~~~i~~ql~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~a~~~~~~  181 (298)
T 3f66_A          105 VLPYMKHGDLRNFIRNETH-NPTVKDLIGFGLQVAKGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDK  181 (298)
T ss_dssp             EEECCTTCBHHHHHHCTTC-CCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTCCEEECSCGGGCCCSCG
T ss_pred             EEeCCCCCCHHHHHHhccc-CCCHHHHHHHHHHHHHHHHHHHhCCccCCCCchheEEECCCCCEEECccccccccccc
Confidence            9999999999999976443 58999999999999999999986        468999999999999999999877543

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=99.91  E-value=2.6e-24  Score=182.90  Aligned_cols=133  Identities=23%  Similarity=0.338  Sum_probs=110.5

Q ss_pred             HHhCCCCccceeeecCceEEEEEEecCCch------------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCe
Q 039406           96 RATDGFSDANLLRQDGFGYVHRGVLPNGKE------------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQ  157 (243)
Q Consensus        96 ~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~------------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~  157 (243)
                      ...++|.+.+.||+|+||.||+|++..+.+                  ..+.+.+|+.+|++++|+||+++++++.+.+.
T Consensus         7 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~   86 (346)
T 1ua2_A            7 SRAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSN   86 (346)
T ss_dssp             ------CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTC
T ss_pred             HHhcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeCCc
Confidence            345789999999999999999998765321                  12467899999999999999999999999999


Q ss_pred             eEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          158 RMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       158 ~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      .|+||||+++ +|.+++..... .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++.+..
T Consensus        87 ~~lv~e~~~~-~l~~~~~~~~~-~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~  164 (346)
T 1ua2_A           87 ISLVFDFMET-DLEVIIKDNSL-VLTPSHIKAYMLMTLQGLEYLHQHWILHRDLKPNNLLLDENGVLKLADFGLAKSFGS  164 (346)
T ss_dssp             CEEEEECCSE-EHHHHHTTCCS-SCCSSHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCCGGGSTTTS
T ss_pred             eEEEEEcCCC-CHHHHHHhcCc-CCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCHHHEEEcCCCCEEEEecccceeccC
Confidence            9999999976 89888875443 48888999999999999999986        46899999999999999999998754


Q ss_pred             C
Q 039406          230 V  230 (243)
Q Consensus       230 ~  230 (243)
                      .
T Consensus       165 ~  165 (346)
T 1ua2_A          165 P  165 (346)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=99.91  E-value=1.8e-24  Score=197.02  Aligned_cols=129  Identities=28%  Similarity=0.374  Sum_probs=109.0

Q ss_pred             CCCccc-eeeecCceEEEEEEecCC----------------chhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEE
Q 039406          100 GFSDAN-LLRQDGFGYVHRGVLPNG----------------KEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVY  162 (243)
Q Consensus       100 ~~~~~~-~lg~G~~g~V~~~~~~~~----------------~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  162 (243)
                      ++.+.+ .||+|+||.||+|.++..                ....+.+.+|+.+|++++|+|||++++++.. +.+||||
T Consensus       336 ~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~-~~~~lv~  414 (613)
T 2ozo_A          336 NLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EALMLVM  414 (613)
T ss_dssp             SEEEEEEEEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEES-SSEEEEE
T ss_pred             ceeEcCcEEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEecc-CCeEEEE
Confidence            344444 799999999999976421                1246789999999999999999999999876 5699999


Q ss_pred             eccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          163 EFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       163 e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      |||.+|+|.+++..... .+++..++.++.||+.||.|||.        +++||||+.++.+||+|||+++.+...
T Consensus       415 E~~~~g~L~~~l~~~~~-~l~~~~~~~i~~qi~~~L~~LH~~~iiHrDlkp~NILl~~~~~vkL~DFGla~~~~~~  489 (613)
T 2ozo_A          415 EMAGGGPLHKFLVGKRE-EIPVSNVAELLHQVSMGMKYLEEKNFVHRNLAARNVLLVNRHYAKISDFGLSKALGAD  489 (613)
T ss_dssp             ECCTTCBHHHHHTTCTT-TSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECCCSTTTTCC--
T ss_pred             EeCCCCcHHHHHhhccC-CCCHHHHHHHHHHHHHHHHHHHHCCEEcCcCCHHHEEEcCCCcEEEeeccCcccccCC
Confidence            99999999999975433 58999999999999999999976        458999999999999999999987543

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.91  E-value=1.9e-24  Score=176.60  Aligned_cols=130  Identities=27%  Similarity=0.391  Sum_probs=115.4

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch-----------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccCC
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE-----------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLN  167 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~-----------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~  167 (243)
                      ++|...+.||+|+||.||+|.+..+..           ..+.+.+|+.++++++|+||+++++++.+.+..|+||||+++
T Consensus         8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~   87 (267)
T 3t9t_A            8 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVTEFMEH   87 (267)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTTBCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEECCCTT
T ss_pred             hheeeeeEecCCCceeEEEEEecCCCeEEEEEccccCCCHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCeEEEEeCCCC
Confidence            678899999999999999998754421           356789999999999999999999999999999999999999


Q ss_pred             CCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          168 NTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       168 g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      ++|.+++..... .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++....
T Consensus        88 ~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~  156 (267)
T 3t9t_A           88 GCLSDYLRTQRG-LFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLD  156 (267)
T ss_dssp             CBHHHHHHHTTT-CCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCCGGGEEECGGGCEEECCTTGGGGBCC
T ss_pred             CcHHHHHhhCcc-cCCHHHHHHHHHHHHHHHHHHHhCCcccCCCchheEEECCCCCEEEccccccccccc
Confidence            999999976543 48999999999999999999987        45899999999999999999987643

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=99.91  E-value=1.2e-24  Score=184.33  Aligned_cols=142  Identities=22%  Similarity=0.267  Sum_probs=119.2

Q ss_pred             HhCCCCccceeeecCceEEEEEEecCCch---------------------hHHHHHHHHHHHHhcCCCccceEEEEEEeC
Q 039406           97 ATDGFSDANLLRQDGFGYVHRGVLPNGKE---------------------GEREFQAEVEIISRVHHKHLVSLVGYYTAG  155 (243)
Q Consensus        97 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~---------------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~  155 (243)
                      ..++|.+.+.||+|+||.||+|++..+.+                     ....+.+|+.+|++++|+||+++++++.+.
T Consensus        22 ~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~~  101 (335)
T 3dls_A           22 YSQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQ  101 (335)
T ss_dssp             HHHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEECS
T ss_pred             cccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEeeC
Confidence            45789999999999999999998654422                     223567899999999999999999999999


Q ss_pred             CeeEEEEeccCCC-CHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCcee
Q 039406          156 SQRMLVYEFVLNN-TLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKI  226 (243)
Q Consensus       156 ~~~~lv~e~~~~g-~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~  226 (243)
                      +.+++||||+.+| +|.+++....  .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++.
T Consensus       102 ~~~~lv~e~~~~g~~l~~~~~~~~--~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~a~~  179 (335)
T 3dls_A          102 GFFQLVMEKHGSGLDLFAFIDRHP--RLDEPLASYIFRQLVSAVGYLRLKDIIHRDIKDENIVIAEDFTIKLIDFGSAAY  179 (335)
T ss_dssp             SEEEEEEECCTTSCBHHHHHHTCC--CCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEE
T ss_pred             CEEEEEEEeCCCCccHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCCeEEeccCHHHEEEcCCCcEEEeecccceE
Confidence            9999999999776 9999997654  48999999999999999999976        56899999999999999999998


Q ss_pred             cCCCCceeeecccccc
Q 039406          227 ASDVNTHVSTRVMGTF  242 (243)
Q Consensus       227 ~~~~~~~~~~~~~GT~  242 (243)
                      +.....  ....+||+
T Consensus       180 ~~~~~~--~~~~~gt~  193 (335)
T 3dls_A          180 LERGKL--FYTFCGTI  193 (335)
T ss_dssp             CCTTCC--BCEECSCG
T ss_pred             CCCCCc--eeccCCCc
Confidence            765433  12245554

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=99.91  E-value=7.7e-24  Score=181.42  Aligned_cols=148  Identities=20%  Similarity=0.280  Sum_probs=123.5

Q ss_pred             HHHHHHHhCCCCccceeeecCceEEEEEEecCCch---------------------hHHHHHHHHHHHHhc-CCCccceE
Q 039406           91 YEELARATDGFSDANLLRQDGFGYVHRGVLPNGKE---------------------GEREFQAEVEIISRV-HHKHLVSL  148 (243)
Q Consensus        91 ~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~---------------------~~~~~~~E~~~l~~l-~hp~iv~~  148 (243)
                      ........++|.+.+.||+|+||.||+|++..+.+                     ..+.+.+|+.+|+++ +|+||+++
T Consensus        86 ~~~~~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~  165 (365)
T 2y7j_A           86 WAAAKEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITL  165 (365)
T ss_dssp             HHHHHHHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCE
T ss_pred             chhhhhhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEE
Confidence            34445566789999999999999999998764321                     245678999999999 79999999


Q ss_pred             EEEEEeCCeeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEec
Q 039406          149 VGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVAD  220 (243)
Q Consensus       149 ~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~D  220 (243)
                      ++++...+..|+||||+++++|.+++....  .+++..++.++.|++.||.|||.        +|+|||++.++.+||+|
T Consensus       166 ~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~--~l~~~~~~~i~~qi~~~L~~LH~~gi~H~Dlkp~NIl~~~~~~ikl~D  243 (365)
T 2y7j_A          166 IDSYESSSFMFLVFDLMRKGELFDYLTEKV--ALSEKETRSIMRSLLEAVSFLHANNIVHRDLKPENILLDDNMQIRLSD  243 (365)
T ss_dssp             EEEEEBSSEEEEEECCCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECC
T ss_pred             EEEEeeCCEEEEEEEeCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEEEe
Confidence            999999999999999999999999997543  48999999999999999999987        46899999999999999


Q ss_pred             cCCceecCCCCceeeecccccc
Q 039406          221 FGLAKIASDVNTHVSTRVMGTF  242 (243)
Q Consensus       221 FG~a~~~~~~~~~~~~~~~GT~  242 (243)
                      ||++..+.....  ....+||+
T Consensus       244 fG~~~~~~~~~~--~~~~~gt~  263 (365)
T 2y7j_A          244 FGFSCHLEPGEK--LRELCGTP  263 (365)
T ss_dssp             CTTCEECCTTCC--BCCCCSCG
T ss_pred             cCcccccCCCcc--cccCCCCC
Confidence            999998765432  22345554

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=99.91  E-value=4.3e-24  Score=178.97  Aligned_cols=140  Identities=22%  Similarity=0.207  Sum_probs=111.9

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc---------------hhHHHHHHHHHHHHhc-CCCccceEEEEEEeCCeeEEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK---------------EGEREFQAEVEIISRV-HHKHLVSLVGYYTAGSQRMLVY  162 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~---------------~~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~~~lv~  162 (243)
                      ++|...++||+|+||.||+|++..+.               .....+.+|+..+.++ +|+||+++++++.+.+.+|+||
T Consensus        57 ~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~lv~  136 (311)
T 3p1a_A           57 QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQT  136 (311)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             hheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEEEEE
Confidence            67999999999999999999876432               1234455666666655 8999999999999999999999


Q ss_pred             eccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCcee
Q 039406          163 EFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNTHV  234 (243)
Q Consensus       163 e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~~~  234 (243)
                      ||| +++|.+++...+. .+++..++.++.|++.||.|||.        |++|||++.++.+||+|||+++.......  
T Consensus       137 e~~-~~~L~~~~~~~~~-~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIll~~~~~~kl~DFG~a~~~~~~~~--  212 (311)
T 3p1a_A          137 ELC-GPSLQQHCEAWGA-SLPEAQVWGYLRDTLLALAHLHSQGLVHLDVKPANIFLGPRGRCKLGDFGLLVELGTAGA--  212 (311)
T ss_dssp             ECC-CCBHHHHHHHHCS-CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECGGGCEEECCCTTCEECC------
T ss_pred             ecc-CCCHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEECCCCCEEEccceeeeecccCCC--
Confidence            999 6699888876543 59999999999999999999986        56899999999999999999988754432  


Q ss_pred             eecccccc
Q 039406          235 STRVMGTF  242 (243)
Q Consensus       235 ~~~~~GT~  242 (243)
                      .....||+
T Consensus       213 ~~~~~gt~  220 (311)
T 3p1a_A          213 GEVQEGDP  220 (311)
T ss_dssp             --CCCCCG
T ss_pred             CcccCCCc
Confidence            22344554

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=99.91  E-value=3.2e-24  Score=185.70  Aligned_cols=133  Identities=20%  Similarity=0.244  Sum_probs=114.5

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch--------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCC--eeEEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE--------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGS--QRMLVY  162 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~--------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~--~~~lv~  162 (243)
                      ++|.+.++||+|+||.||+|++..+.+              ..+.+.+|+++|++++|+||+++++++...+  ..|+||
T Consensus         9 ~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~lv~   88 (396)
T 4eut_A            9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIM   88 (396)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEE
T ss_pred             CceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeEEEE
Confidence            679999999999999999998775421              3467889999999999999999999998765  789999


Q ss_pred             eccCCCCHHHHhccCCC-CCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEE----CCCCcEEEeccCCceecCC
Q 039406          163 EFVLNNTLVFHLHGKGQ-PTMDWPTRIKIALGSAKGLAYLHD--------DLANILL----DFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       163 e~~~~g~L~~~l~~~~~-~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl----~~~~~~kl~DFG~a~~~~~  229 (243)
                      |||++|+|.+++..... ..+++..++.++.|++.||.|||.        |++|||+    +.++.+||+|||+++.+..
T Consensus        89 e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~a~~~~~  168 (396)
T 4eut_A           89 EFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELED  168 (396)
T ss_dssp             CCCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEEECTTSCEEEEECCGGGCEECCC
T ss_pred             ecCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHHCCEEECCcCHHHEEEeecCCCceeEEEecCCCceEccC
Confidence            99999999999975432 238999999999999999999976        5689999    7778899999999998765


Q ss_pred             CC
Q 039406          230 VN  231 (243)
Q Consensus       230 ~~  231 (243)
                      ..
T Consensus       169 ~~  170 (396)
T 4eut_A          169 DE  170 (396)
T ss_dssp             GG
T ss_pred             CC
Confidence            43

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=99.91  E-value=4.7e-24  Score=187.59  Aligned_cols=131  Identities=27%  Similarity=0.403  Sum_probs=114.3

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCc---------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCC-eeEEEEeccCC
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGK---------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGS-QRMLVYEFVLN  167 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~---------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-~~~lv~e~~~~  167 (243)
                      .++|.+.+.||+|+||.||+|.+....         ...+.|.+|+.+|++++|+||+++++++.... .+|||||||++
T Consensus       192 ~~~~~~~~~lG~G~fg~V~~~~~~~~~vavK~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~iv~e~~~~  271 (450)
T 1k9a_A          192 MKELKLLQTIGKGEFGDVMLGDYRGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAK  271 (450)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTEEEEEEEESSCTTSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCEEEEEECCTT
T ss_pred             hHHeEEEeeecCcCCeeEEEEEecCCeEEEEEeCCchHHHHHHHHHHHHHhccCCCEEEEEEEEEcCCCceEEEEEecCC
Confidence            467888999999999999999765321         24678999999999999999999999987665 79999999999


Q ss_pred             CCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          168 NTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       168 g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      |+|.+++...+...+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++...
T Consensus       272 g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~  340 (450)
T 1k9a_A          272 GSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEAS  340 (450)
T ss_dssp             CBHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTSCEEECCCTTCEECC
T ss_pred             CcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCHhhEEECCCCCEEEeeCCCccccc
Confidence            999999987655457999999999999999999976        4589999999999999999998654

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=99.91  E-value=3.8e-24  Score=181.33  Aligned_cols=134  Identities=21%  Similarity=0.347  Sum_probs=114.6

Q ss_pred             HhCCCCccceeeecCceEEEEEEecCC-------------------chhHHHHHHHHHHHHhc-CCCccceEEEEEEeCC
Q 039406           97 ATDGFSDANLLRQDGFGYVHRGVLPNG-------------------KEGEREFQAEVEIISRV-HHKHLVSLVGYYTAGS  156 (243)
Q Consensus        97 ~~~~~~~~~~lg~G~~g~V~~~~~~~~-------------------~~~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~  156 (243)
                      ..++|.+.+.||+|+||.||+|.+...                   ....+.+.+|+.+|+++ +||||+++++++...+
T Consensus        43 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~  122 (344)
T 1rjb_A           43 PRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSG  122 (344)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred             CHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEeeCC
Confidence            347899999999999999999986321                   11346789999999999 8999999999999999


Q ss_pred             eeEEEEeccCCCCHHHHhccCCC---------------------CCCCHHHHHHHHHHHHHhhhHhhc--------CCCc
Q 039406          157 QRMLVYEFVLNNTLVFHLHGKGQ---------------------PTMDWPTRIKIALGSAKGLAYLHD--------DLAN  207 (243)
Q Consensus       157 ~~~lv~e~~~~g~L~~~l~~~~~---------------------~~l~~~~~~~i~~~i~~~l~~lH~--------~~~N  207 (243)
                      .+|+|||||++|+|.+++.....                     ..+++..++.++.|++.||.|||.        +|+|
T Consensus       123 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~N  202 (344)
T 1rjb_A          123 PIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSCVHRDLAARN  202 (344)
T ss_dssp             SCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHTTEEETTCSGGG
T ss_pred             ccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChhh
Confidence            99999999999999999976532                     237899999999999999999986        5689


Q ss_pred             EEECCCCcEEEeccCCceecCCC
Q 039406          208 ILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       208 iLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      ||++.++.+||+|||+++.+...
T Consensus       203 Ill~~~~~~kL~Dfg~~~~~~~~  225 (344)
T 1rjb_A          203 VLVTHGKVVKICDFGLARDIMSD  225 (344)
T ss_dssp             EEEETTTEEEECCCGGGSCGGGC
T ss_pred             EEEcCCCcEEeCCCccCcccccC
Confidence            99999999999999999877544

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=99.91  E-value=9.7e-24  Score=174.00  Aligned_cols=132  Identities=23%  Similarity=0.313  Sum_probs=115.0

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCc---------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEE
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGK---------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVY  162 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~---------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  162 (243)
                      .++|.+.+.||+|+||.||+|.+..+.               ...+.+.+|+.++++++|+||+++++++...+..|+||
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   84 (284)
T 3kk8_A            5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVF   84 (284)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEEEE
Confidence            478999999999999999999876542               13467889999999999999999999999999999999


Q ss_pred             eccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCc---EEEeccCCceecCCCC
Q 039406          163 EFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFE---AKVADFGLAKIASDVN  231 (243)
Q Consensus       163 e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~---~kl~DFG~a~~~~~~~  231 (243)
                      ||+.+++|.+++....  .+++..+..++.|++.||.|||.        +++|||++.++.   +||+|||++.......
T Consensus        85 e~~~~~~l~~~~~~~~--~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~~~~~~  162 (284)
T 3kk8_A           85 DLVTGGELFEDIVARE--FYSEADASHCIQQILESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSE  162 (284)
T ss_dssp             CCCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEESSSSTTCCEEECCCTTCEECCSSC
T ss_pred             ecCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCcCcCCCCHHHEEEecCCCCCcEEEeeceeeEEcccCc
Confidence            9999999998886554  48999999999999999999986        468999986655   9999999998876543

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=99.91  E-value=3.9e-24  Score=180.61  Aligned_cols=130  Identities=20%  Similarity=0.310  Sum_probs=111.0

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch---------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEe
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE---------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYE  163 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~---------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e  163 (243)
                      ++|.+.+.||+|+||.||+|+...+.+               ..+.+.+|+.+|++++|+||+++++++.+.+..|+|||
T Consensus        25 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e  104 (331)
T 4aaa_A           25 EKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVFE  104 (331)
T ss_dssp             GGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             hhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCCEEEEEEe
Confidence            789999999999999999998765321               34567899999999999999999999999999999999


Q ss_pred             ccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          164 FVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       164 ~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      |+++++|.+++....  .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++.+...
T Consensus       105 ~~~~~~l~~~~~~~~--~~~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~  177 (331)
T 4aaa_A          105 FVDHTILDDLELFPN--GLDYQVVQKYLFQIINGIGFCHSHNIIHRDIKPENILVSQSGVVKLCDFGFARTLAAP  177 (331)
T ss_dssp             CCSEEHHHHHHHSTT--CCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCTTC------
T ss_pred             cCCcchHHHHHhhcc--CCCHHHHHHHHHHHHHHHHHHHHCCEEccCcChheEEEcCCCcEEEEeCCCceeecCC
Confidence            999999988876544  48999999999999999999986        458999999999999999999876543

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=99.91  E-value=8.4e-24  Score=178.77  Aligned_cols=133  Identities=22%  Similarity=0.356  Sum_probs=115.4

Q ss_pred             hCCCCccceeeecCceEEEEEEecCC---------------------chhHHHHHHHHHHHHhc-CCCccceEEEEEEeC
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNG---------------------KEGEREFQAEVEIISRV-HHKHLVSLVGYYTAG  155 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~---------------------~~~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~  155 (243)
                      .++|.+.+.||+|+||.||+|.+...                     ....+.+.+|+.+|+++ +|+||+++++++...
T Consensus        34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~  113 (334)
T 2pvf_A           34 RDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD  113 (334)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred             HhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEccC
Confidence            37899999999999999999976421                     12356788999999999 899999999999999


Q ss_pred             CeeEEEEeccCCCCHHHHhccCCC--------------CCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCC
Q 039406          156 SQRMLVYEFVLNNTLVFHLHGKGQ--------------PTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFK  213 (243)
Q Consensus       156 ~~~~lv~e~~~~g~L~~~l~~~~~--------------~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~  213 (243)
                      +.+|+||||+.+++|.+++.....              ..+++..++.++.|++.||.|||.        +++|||++.+
T Consensus       114 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~  193 (334)
T 2pvf_A          114 GPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTEN  193 (334)
T ss_dssp             SCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTT
T ss_pred             CceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCccceEEEcCC
Confidence            999999999999999999976432              238899999999999999999986        4689999999


Q ss_pred             CcEEEeccCCceecCCC
Q 039406          214 FEAKVADFGLAKIASDV  230 (243)
Q Consensus       214 ~~~kl~DFG~a~~~~~~  230 (243)
                      +.+||+|||+++.+...
T Consensus       194 ~~~kL~Dfg~~~~~~~~  210 (334)
T 2pvf_A          194 NVMKIADFGLARDINNI  210 (334)
T ss_dssp             CCEEECCCTTCEECTTT
T ss_pred             CCEEEcccccccccccc
Confidence            99999999999987654

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=99.91  E-value=3e-24  Score=187.28  Aligned_cols=142  Identities=19%  Similarity=0.289  Sum_probs=110.9

Q ss_pred             HHhCCCCccceeeecCceEEEEEEecCCch---------------------hHHHHHHHHHHHHhcCCCccceEEEEEEe
Q 039406           96 RATDGFSDANLLRQDGFGYVHRGVLPNGKE---------------------GEREFQAEVEIISRVHHKHLVSLVGYYTA  154 (243)
Q Consensus        96 ~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~---------------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~  154 (243)
                      ...++|.+.+.||+|+||.||+|....+.+                     ....+.+|+.+|++++||||+++++++. 
T Consensus       132 ~~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~-  210 (419)
T 3i6u_A          132 ALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFD-  210 (419)
T ss_dssp             HHHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEE-
T ss_pred             hhhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEe-
Confidence            345889999999999999999998765421                     1124789999999999999999999975 


Q ss_pred             CCeeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCC---CcEEEeccCC
Q 039406          155 GSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFK---FEAKVADFGL  223 (243)
Q Consensus       155 ~~~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~---~~~kl~DFG~  223 (243)
                      .+.+|+|||||.+|+|.+++....  .+++..++.++.|++.||.|||.        |++|||++.+   +.+||+|||+
T Consensus       211 ~~~~~lv~e~~~~g~L~~~l~~~~--~~~~~~~~~i~~qi~~~l~~LH~~~ivHrDlkp~NIll~~~~~~~~~kl~DFG~  288 (419)
T 3i6u_A          211 AEDYYIVLELMEGGELFDKVVGNK--RLKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGH  288 (419)
T ss_dssp             SSEEEEEEECCTTCBGGGGTSSSC--CCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESSSSSSCCEEECCSST
T ss_pred             cCceEEEEEcCCCCcHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHHCCccccCCChHhEEEecCCCcceEEEeeccc
Confidence            456899999999999999886554  48999999999999999999976        5689999754   4599999999


Q ss_pred             ceecCCCCceeeecccccc
Q 039406          224 AKIASDVNTHVSTRVMGTF  242 (243)
Q Consensus       224 a~~~~~~~~~~~~~~~GT~  242 (243)
                      |+.+.....  ....+||+
T Consensus       289 a~~~~~~~~--~~~~~gt~  305 (419)
T 3i6u_A          289 SKILGETSL--MRTLCGTP  305 (419)
T ss_dssp             TTSCC-------------C
T ss_pred             ceecCCCcc--ccccCCCC
Confidence            998764332  23356665

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.91  E-value=6.1e-25  Score=197.23  Aligned_cols=129  Identities=28%  Similarity=0.426  Sum_probs=111.1

Q ss_pred             CCCccceeeecCceEEEEEEecCCc-----------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccCCC
Q 039406          100 GFSDANLLRQDGFGYVHRGVLPNGK-----------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNN  168 (243)
Q Consensus       100 ~~~~~~~lg~G~~g~V~~~~~~~~~-----------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~g  168 (243)
                      +|.+.+.||+|+||.||+|.+..+.           ...+.|.+|+.+|++++|+||+++++++.+ +.+|||||||.+|
T Consensus       268 ~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-~~~~lv~e~~~~g  346 (535)
T 2h8h_A          268 SLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTEYMSKG  346 (535)
T ss_dssp             GEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEECCCTTE
T ss_pred             hhhhheecccCCCeEEEEEEECCCceEEEEEeCCCCCCHHHHHHHHHHHHhCCCCCEeeEEEEEee-ccceEeeehhcCC
Confidence            3556778999999999999876542           135789999999999999999999999876 7799999999999


Q ss_pred             CHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          169 TLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       169 ~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      +|.+++.......+++..++.++.||+.||.|||.        +++||||+.++.+||+|||+++.+..
T Consensus       347 sL~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~  415 (535)
T 2h8h_A          347 SLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIED  415 (535)
T ss_dssp             EHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCTTSTTTCCC
T ss_pred             cHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCHhhEEEcCCCcEEEcccccceecCC
Confidence            99999975433358999999999999999999976        45899999999999999999987653

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=99.91  E-value=1.9e-24  Score=184.41  Aligned_cols=128  Identities=20%  Similarity=0.281  Sum_probs=114.2

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc--------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEec
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK--------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEF  164 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~--------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  164 (243)
                      ++|.+.+.||+|+||.||++.+..+.              ...+.+.+|+.+|++++|+||+++++++.+.+..|+||||
T Consensus        33 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~  112 (360)
T 3eqc_A           33 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEH  112 (360)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTEEEEEECC
T ss_pred             ccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCEEEEEEEC
Confidence            57999999999999999999876432              2456789999999999999999999999999999999999


Q ss_pred             cCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc---------CCCcEEECCCCcEEEeccCCceecC
Q 039406          165 VLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD---------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       165 ~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~---------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      |++++|.+++...+  .+++..+..++.+++.||.|||.         +++|||++.++.+||+|||+++.+.
T Consensus       113 ~~~~~L~~~l~~~~--~~~~~~~~~i~~~i~~~l~~lh~~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~  183 (360)
T 3eqc_A          113 MDGGSLDQVLKKAG--RIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLI  183 (360)
T ss_dssp             CTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHHHCCCCSCCSGGGEEECTTCCEEECCCCCCHHHH
T ss_pred             CCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHhCCEEcCCccHHHEEECCCCCEEEEECCCCcccc
Confidence            99999999997654  48999999999999999999985         3589999999999999999997653

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=99.91  E-value=3.8e-24  Score=189.83  Aligned_cols=142  Identities=20%  Similarity=0.286  Sum_probs=118.2

Q ss_pred             HhCCCCccceeeecCceEEEEEEecCCch---------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEE
Q 039406           97 ATDGFSDANLLRQDGFGYVHRGVLPNGKE---------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLV  161 (243)
Q Consensus        97 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~---------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv  161 (243)
                      ..++|.+.+.||+|+||.||+|+...+..               ....+.+|+.+|++++||||+++++++.+.+.+|+|
T Consensus        20 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv   99 (486)
T 3mwu_A           20 FAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIV   99 (486)
T ss_dssp             HHHHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hhcceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEEEEE
Confidence            34679999999999999999998764421               356788999999999999999999999999999999


Q ss_pred             EeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEEC---CCCcEEEeccCCceecCCC
Q 039406          162 YEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLD---FKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       162 ~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~---~~~~~kl~DFG~a~~~~~~  230 (243)
                      ||||.+++|.+++....  .+++..++.++.|++.||.|||.        +|+|||++   .++.+||+|||+++.+...
T Consensus       100 ~e~~~~~~L~~~~~~~~--~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~  177 (486)
T 3mwu_A          100 GELYTGGELFDEIIKRK--RFSEHDAARIIKQVFSGITYMHKHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQN  177 (486)
T ss_dssp             ECCCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEESSSSTTCCEEECSCSCTTTBCCC
T ss_pred             EEcCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCeEeccCchHHEEEecCCCCCCEEEEECCcCeECCCC
Confidence            99999999999886554  48999999999999999999986        56899995   4568999999999877544


Q ss_pred             Cceeeecccccc
Q 039406          231 NTHVSTRVMGTF  242 (243)
Q Consensus       231 ~~~~~~~~~GT~  242 (243)
                      ..  ....+||+
T Consensus       178 ~~--~~~~~gt~  187 (486)
T 3mwu_A          178 TK--MKDRIGTA  187 (486)
T ss_dssp             ------CCTTGG
T ss_pred             Cc--cCCCcCCC
Confidence            32  22345664

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=99.91  E-value=4.7e-24  Score=175.05  Aligned_cols=130  Identities=22%  Similarity=0.326  Sum_probs=115.3

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCc--------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEe
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGK--------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYE  163 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~--------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e  163 (243)
                      .++|.+.+.||+|+||.||+|....+.              ...+.+.+|+.+++.++|+||+++++++.+.+..|+|||
T Consensus         6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   85 (276)
T 2yex_A            6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLE   85 (276)
T ss_dssp             HHHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             ecceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEEEEEEE
Confidence            467999999999999999999876432              135778999999999999999999999999999999999


Q ss_pred             ccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          164 FVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       164 ~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      |+++++|.+++....  .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||++..+..
T Consensus        86 ~~~~~~L~~~l~~~~--~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~  157 (276)
T 2yex_A           86 YCSGGELFDRIEPDI--GMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRY  157 (276)
T ss_dssp             CCTTEEGGGGSBTTT--BCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEECEE
T ss_pred             ecCCCcHHHHHhhcc--CCCHHHHHHHHHHHHHHHHHHHhCCeeccCCChHHEEEccCCCEEEeeCCCccccCC
Confidence            999999999986543  48999999999999999999986        45899999999999999999987643

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=99.91  E-value=6.2e-24  Score=180.94  Aligned_cols=129  Identities=26%  Similarity=0.333  Sum_probs=111.3

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc----------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK----------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVY  162 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~----------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  162 (243)
                      +.|...+.||+|+||.||+|+...+.                ...+.+.+|+++|++++|+||+++++++.+.+..|+||
T Consensus        54 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~  133 (348)
T 1u5q_A           54 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVM  133 (348)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             hheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEEEE
Confidence            45888999999999999999864432                13467889999999999999999999999999999999


Q ss_pred             eccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          163 EFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       163 e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      |||. |+|.+++..... .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++....
T Consensus       134 e~~~-g~l~~~l~~~~~-~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~  206 (348)
T 1u5q_A          134 EYCL-GSASDLLEVHKK-PLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAP  206 (348)
T ss_dssp             ECCS-EEHHHHHHHHTS-CCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEEETTTEEEECCCTTCBSSSS
T ss_pred             ecCC-CCHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEECCCCCEEEeeccCceecCC
Confidence            9997 588877754332 58999999999999999999976        46899999999999999999987654

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=99.91  E-value=1.4e-23  Score=174.89  Aligned_cols=129  Identities=25%  Similarity=0.376  Sum_probs=115.0

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc--------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEec
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK--------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEF  164 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~--------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  164 (243)
                      +.|...+.||+|+||.||+|+...+.              ...+.+.+|+.+|++++|+||+++++++.+.+..|+||||
T Consensus        22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~  101 (303)
T 3a7i_A           22 ELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEY  101 (303)
T ss_dssp             GTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             HHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEEe
Confidence            56899999999999999999765432              2457889999999999999999999999999999999999


Q ss_pred             cCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          165 VLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       165 ~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      +++++|.+++...   .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||++..+...
T Consensus       102 ~~~~~L~~~~~~~---~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~  172 (303)
T 3a7i_A          102 LGGGSALDLLEPG---PLDETQIATILREILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDT  172 (303)
T ss_dssp             CTTEEHHHHHTTS---CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECBTT
T ss_pred             CCCCcHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHCCCccCCCChheEEECCCCCEEEeecccceecCcc
Confidence            9999999998643   48999999999999999999986        458999999999999999999887544

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=99.91  E-value=1.2e-24  Score=183.33  Aligned_cols=131  Identities=26%  Similarity=0.393  Sum_probs=112.5

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch------------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE------------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRML  160 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~------------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~l  160 (243)
                      ++|.+.+.||+|+||.||+|++..+..                  ..+.+.+|+.++++++|+||+++++++. ++..++
T Consensus        13 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~~   91 (325)
T 3kex_A           13 TELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCP-GSSLQL   91 (325)
T ss_dssp             TTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEEC-BSSEEE
T ss_pred             hHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEc-CCccEE
Confidence            678999999999999999998654321                  2345678999999999999999999886 467899


Q ss_pred             EEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCC
Q 039406          161 VYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVN  231 (243)
Q Consensus       161 v~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~  231 (243)
                      ||||+.+|+|.+++..... .+++..++.++.|++.||.|||.        |++|||++.++.+||+|||+++.+....
T Consensus        92 v~e~~~~~~L~~~l~~~~~-~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~  169 (325)
T 3kex_A           92 VTQYLPLGSLLDHVRQHRG-ALGPQLLLNWGVQIAKGMYYLEEHGMVHRNLAARNVLLKSPSQVQVADFGVADLLPPDD  169 (325)
T ss_dssp             EEECCTTCBSHHHHHSSGG-GSCTTHHHHHHHHHHHHHHHHHHTTCCCSCCSSTTEEESSSSCEEECSCSGGGGSCCCT
T ss_pred             EEEeCCCCCHHHHHHHccc-cCCHHHHHHHHHHHHHHHHHHHhCCCCCCccchheEEECCCCeEEECCCCcccccCccc
Confidence            9999999999999976532 48888999999999999999986        5699999999999999999999875443

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=99.91  E-value=3.6e-24  Score=177.01  Aligned_cols=129  Identities=24%  Similarity=0.299  Sum_probs=113.6

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc--------------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCee
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK--------------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQR  158 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~--------------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~  158 (243)
                      ++|.+.+.||+|+||.||+|++..+.                    ...+.+.+|+.+|++++|+||+++++++.+.+..
T Consensus         8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~   87 (289)
T 4fvq_A            8 EDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCVCGDEN   87 (289)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTSCCTTBCCEEEEECCTTCC
T ss_pred             hHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEeCCCC
Confidence            67899999999999999999755421                    2457789999999999999999999999999999


Q ss_pred             EEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCc--------EEEeccC
Q 039406          159 MLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFE--------AKVADFG  222 (243)
Q Consensus       159 ~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~--------~kl~DFG  222 (243)
                      |+||||+++++|.+++..... .+++..++.++.|++.||.|||.        +++|||++.++.        +||+|||
T Consensus        88 ~lv~e~~~~~~L~~~l~~~~~-~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~kl~Dfg  166 (289)
T 4fvq_A           88 ILVQEFVKFGSLDTYLKKNKN-CINILWKLEVAKQLAAAMHFLEENTLIHGNVCAKNILLIREEDRKTGNPPFIKLSDPG  166 (289)
T ss_dssp             EEEEECCTTCBHHHHHHHTGG-GCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEEECCBGGGTBCCEEEECCCC
T ss_pred             EEEEECCCCCCHHHHHHhCCC-CCCHHHHHHHHHHHHHHHHHHhhCCeECCCcCcceEEEecCCcccccccceeeeccCc
Confidence            999999999999999976543 38999999999999999999976        568999988877        9999999


Q ss_pred             CceecC
Q 039406          223 LAKIAS  228 (243)
Q Consensus       223 ~a~~~~  228 (243)
                      +++...
T Consensus       167 ~~~~~~  172 (289)
T 4fvq_A          167 ISITVL  172 (289)
T ss_dssp             SCTTTS
T ss_pred             cccccc
Confidence            997654

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.91  E-value=6.4e-24  Score=179.63  Aligned_cols=131  Identities=24%  Similarity=0.418  Sum_probs=109.4

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc------------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK------------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRML  160 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~------------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~l  160 (243)
                      ++|...+.||+|+||.||+|.+..+.                  .....+.+|+.+|++++|+||+++++++...+..||
T Consensus        44 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l  123 (333)
T 1mqb_A           44 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMMI  123 (333)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEE
T ss_pred             HHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCCcEE
Confidence            56777899999999999999765321                  134578899999999999999999999999999999


Q ss_pred             EEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          161 VYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       161 v~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      ||||+++++|.+++..... .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++.+...
T Consensus       124 v~e~~~~~~L~~~l~~~~~-~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~  200 (333)
T 1mqb_A          124 ITEYMENGALDKFLREKDG-EFSVLQLVGMLRGIAAGMKYLANMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDD  200 (333)
T ss_dssp             EEECCTTEEHHHHHHHTTT-CSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCCCC-------
T ss_pred             EEeCCCCCcHHHHHHhCCC-CCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChheEEECCCCcEEECCCCcchhhccc
Confidence            9999999999999976533 58999999999999999999986        458999999999999999999987543

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=99.91  E-value=7.7e-24  Score=176.11  Aligned_cols=132  Identities=23%  Similarity=0.349  Sum_probs=113.0

Q ss_pred             CCCCccceeeecCceEEEEEEec----CCc--------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeC--Cee
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLP----NGK--------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAG--SQR  158 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~----~~~--------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~--~~~  158 (243)
                      +.|...+.||+|+||.||+|++.    ...              ...+.+.+|+.+|++++|+||+++++++...  +.+
T Consensus        21 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~  100 (302)
T 4e5w_A           21 RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGI  100 (302)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---CCE
T ss_pred             hhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCceE
Confidence            55888999999999999999842    111              1347789999999999999999999999876  678


Q ss_pred             EEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          159 MLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       159 ~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      ++||||+++++|.+++..... .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++.+...
T Consensus       101 ~lv~e~~~~~~L~~~l~~~~~-~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~  179 (302)
T 4e5w_A          101 KLIMEFLPSGSLKEYLPKNKN-KINLKQQLKYAVQICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETD  179 (302)
T ss_dssp             EEEEECCTTCBHHHHHHHHTT-TCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCCTTCEECCTT
T ss_pred             EEEEEeCCCCcHHHHHHhccc-cCCHHHHHHHHHHHHHHHHHhhcCCcccCCCchheEEEcCCCCEEECcccccccccCC
Confidence            999999999999999965433 48999999999999999999986        468999999999999999999987654


Q ss_pred             C
Q 039406          231 N  231 (243)
Q Consensus       231 ~  231 (243)
                      .
T Consensus       180 ~  180 (302)
T 4e5w_A          180 K  180 (302)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=99.91  E-value=3.9e-24  Score=189.62  Aligned_cols=141  Identities=18%  Similarity=0.283  Sum_probs=119.6

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCc----------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEE
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGK----------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLV  161 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~----------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv  161 (243)
                      .++|.+.+.||+|+||.||+|+...+.                ...+.+.+|+.+|++++||||+++++++.+.+.+|+|
T Consensus        25 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv  104 (484)
T 3nyv_A           25 SDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLV  104 (484)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             cCceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEE
Confidence            367999999999999999999866432                2467789999999999999999999999999999999


Q ss_pred             EeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEE---CCCCcEEEeccCCceecCCC
Q 039406          162 YEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILL---DFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       162 ~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl---~~~~~~kl~DFG~a~~~~~~  230 (243)
                      ||||.+++|.+++....  .+++..++.++.|++.||.|||.        +|+|||+   +.++.+||+|||+++.+...
T Consensus       105 ~e~~~~~~L~~~~~~~~--~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~  182 (484)
T 3nyv_A          105 GEVYTGGELFDEIISRK--RFSEVDAARIIRQVLSGITYMHKNKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEAS  182 (484)
T ss_dssp             ECCCCSCBHHHHHHTCS--CCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESSSSTTCCEEECCTTHHHHBCCC
T ss_pred             EecCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEEecCCCCCcEEEEeeeeeEEcccc
Confidence            99999999999987654  48999999999999999999986        5689999   56789999999999887554


Q ss_pred             Cceeeecccccc
Q 039406          231 NTHVSTRVMGTF  242 (243)
Q Consensus       231 ~~~~~~~~~GT~  242 (243)
                      ..  ....+||+
T Consensus       183 ~~--~~~~~gt~  192 (484)
T 3nyv_A          183 KK--MKDKIGTA  192 (484)
T ss_dssp             CS--HHHHTTGG
T ss_pred             cc--cccCCCCc
Confidence            32  22345554

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=99.91  E-value=6.2e-24  Score=177.40  Aligned_cols=134  Identities=25%  Similarity=0.377  Sum_probs=116.2

Q ss_pred             hCCCCccceeeecCceEEEEEEecC-----C--------------chhHHHHHHHHHHHHhc-CCCccceEEEEEEeCCe
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPN-----G--------------KEGEREFQAEVEIISRV-HHKHLVSLVGYYTAGSQ  157 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~-----~--------------~~~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~  157 (243)
                      .++|.+.+.||+|+||.||+|.+..     +              ....+.+.+|+.+|+++ +|+||+++++++.+.+.
T Consensus        22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~  101 (313)
T 1t46_A           22 RNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGP  101 (313)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred             hhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEecCCC
Confidence            3689999999999999999997522     1              12357789999999999 99999999999999999


Q ss_pred             eEEEEeccCCCCHHHHhccCCC----------------CCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCC
Q 039406          158 RMLVYEFVLNNTLVFHLHGKGQ----------------PTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFK  213 (243)
Q Consensus       158 ~~lv~e~~~~g~L~~~l~~~~~----------------~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~  213 (243)
                      .++||||+++|+|.+++.....                ..+++..++.++.|++.||.|||.        +++|||++.+
T Consensus       102 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~  181 (313)
T 1t46_A          102 TLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHG  181 (313)
T ss_dssp             CEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEETT
T ss_pred             cEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHCCeecCCCccceEEEcCC
Confidence            9999999999999999976542                148999999999999999999986        4689999999


Q ss_pred             CcEEEeccCCceecCCCC
Q 039406          214 FEAKVADFGLAKIASDVN  231 (243)
Q Consensus       214 ~~~kl~DFG~a~~~~~~~  231 (243)
                      +.+||+|||+++......
T Consensus       182 ~~~kl~Dfg~~~~~~~~~  199 (313)
T 1t46_A          182 RITKICDFGLARDIKNDS  199 (313)
T ss_dssp             TEEEECCCGGGSCTTSCT
T ss_pred             CCEEEccccccccccccc
Confidence            999999999999876543

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=99.91  E-value=1.3e-23  Score=172.50  Aligned_cols=131  Identities=22%  Similarity=0.309  Sum_probs=115.5

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEE
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLV  161 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv  161 (243)
                      .++|.+.+.||+|+||.||+|.+..+.+                ..+.+.+|+.+|+.++|+||+++++++...+..|+|
T Consensus        10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   89 (276)
T 2h6d_A           10 IGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMV   89 (276)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             eccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCeEEEE
Confidence            3789999999999999999998764321                245788999999999999999999999999999999


Q ss_pred             EeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          162 YEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       162 ~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      |||+.+++|.+++....  .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||++......
T Consensus        90 ~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~  164 (276)
T 2h6d_A           90 MEYVSGGELFDYICKHG--RVEEMEARRLFQQILSAVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDG  164 (276)
T ss_dssp             EECCCSCBHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHHCSSCCCCCGGGEEECTTSCEEECCCCGGGCCCC-
T ss_pred             EeccCCCcHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHHCCCccCCCChhhEEECCCCCEEEeecccccccCCC
Confidence            99999999999997654  48999999999999999999986        468999999999999999999877543

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=99.90  E-value=1.5e-23  Score=175.16  Aligned_cols=143  Identities=27%  Similarity=0.303  Sum_probs=115.2

Q ss_pred             HhCCCCccceeeecCceEEEEEEecCCch------------------hHHHHHHHHHHHHhcC---CCccceEEEEEEeC
Q 039406           97 ATDGFSDANLLRQDGFGYVHRGVLPNGKE------------------GEREFQAEVEIISRVH---HKHLVSLVGYYTAG  155 (243)
Q Consensus        97 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~------------------~~~~~~~E~~~l~~l~---hp~iv~~~~~~~~~  155 (243)
                      ..++|.+.+.||+|+||.||+|++..+.+                  ....+.+|+.++++++   |+||+++++++...
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~   86 (308)
T 3g33_A            7 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATS   86 (308)
T ss_dssp             ---CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEEC
T ss_pred             cccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeecc
Confidence            35789999999999999999998654432                  1346778888877764   99999999999876


Q ss_pred             C-----eeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccC
Q 039406          156 S-----QRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFG  222 (243)
Q Consensus       156 ~-----~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG  222 (243)
                      .     .+++||||+. ++|.+++.......+++..++.++.|++.||.|||.        +++|||++.++.+||+|||
T Consensus        87 ~~~~~~~~~lv~e~~~-~~L~~~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg  165 (308)
T 3g33_A           87 RTDREIKVTLVFEHVD-QDLRTYLDKAPPPGLPAETIKDLMRQFLRGLDFLHANCIVHRDLKPENILVTSGGTVKLADFG  165 (308)
T ss_dssp             CSSSEEEEEEEEECCC-CBHHHHHHTCCTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCTTTEEECTTSCEEECSCS
T ss_pred             CCCCceeEEEEehhhh-cCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEcCCCCEEEeeCc
Confidence            5     5899999996 599999987665569999999999999999999986        5699999999999999999


Q ss_pred             CceecCCCCceeeecccccc
Q 039406          223 LAKIASDVNTHVSTRVMGTF  242 (243)
Q Consensus       223 ~a~~~~~~~~~~~~~~~GT~  242 (243)
                      +++.+.....  ....+||+
T Consensus       166 ~a~~~~~~~~--~~~~~gt~  183 (308)
T 3g33_A          166 LARIYSYQMA--LTPVVVTL  183 (308)
T ss_dssp             CTTTSTTCCC--SGGGGCCC
T ss_pred             cccccCCCcc--cCCccccc
Confidence            9987754332  23345554

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=99.90  E-value=6e-24  Score=176.09  Aligned_cols=130  Identities=26%  Similarity=0.445  Sum_probs=106.1

Q ss_pred             hCCCCccceeeecCceEEEEEEecCC------------chhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEecc
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNG------------KEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFV  165 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~------------~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~  165 (243)
                      .++|.+.+.||+|+||.||+|++...            ....+.+.+|+.+|++++|+||+++++++ ..+..++|||||
T Consensus        23 ~~~y~~~~~lG~G~~g~Vy~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~-~~~~~~lv~e~~  101 (289)
T 3og7_A           23 DGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS-TAPQLAIVTQWC  101 (289)
T ss_dssp             TTSCEEEEEEEECSSEEEEEEESSSEEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEE-CSSSCEEEEECC
T ss_pred             ccceeeeeEecCCCCeEEEEEEEcCceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeec-cCCccEEEEEec
Confidence            36899999999999999999975432            23457789999999999999999999964 556789999999


Q ss_pred             CCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          166 LNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       166 ~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      ++++|.+++..... .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++....
T Consensus       102 ~~~~L~~~l~~~~~-~~~~~~~~~i~~qi~~~L~~lH~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~  172 (289)
T 3og7_A          102 EGSSLYHHLHASET-KFEMKKLIDIARQTARGMDYLHAKSIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSR  172 (289)
T ss_dssp             CEEEHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEETTTEEEECCCC-------
T ss_pred             CCCcHHHHHhhccC-CCCHHHHHHHHHHHHHHHHHHHhCCcccccCccceEEECCCCCEEEccceecccccc
Confidence            99999999965543 58999999999999999999986        46899999999999999999987643

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=99.90  E-value=1e-24  Score=187.00  Aligned_cols=129  Identities=25%  Similarity=0.346  Sum_probs=111.0

Q ss_pred             CCCCccceeeecCceEEEEEEecCC-------------------chhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNG-------------------KEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRM  159 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~-------------------~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~  159 (243)
                      ++|.+.+.||+|+||.||+|.+...                   ......+.+|+.+|++++|+||+++++++...+..|
T Consensus        71 ~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~  150 (367)
T 3l9p_A           71 KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRF  150 (367)
T ss_dssp             GGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCE
T ss_pred             hHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCE
Confidence            6789999999999999999985421                   124457889999999999999999999999999999


Q ss_pred             EEEeccCCCCHHHHhccCC-----CCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCC---cEEEeccCC
Q 039406          160 LVYEFVLNNTLVFHLHGKG-----QPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKF---EAKVADFGL  223 (243)
Q Consensus       160 lv~e~~~~g~L~~~l~~~~-----~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~---~~kl~DFG~  223 (243)
                      +|||||.+|+|.+++....     ...+++..++.++.|++.||.|||.        |++|||++.++   .+||+|||+
T Consensus       151 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~~~~kL~DFG~  230 (367)
T 3l9p_A          151 ILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGM  230 (367)
T ss_dssp             EEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESCSSTTCCEEECCCHH
T ss_pred             EEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHHhCCeeCCCCChhhEEEecCCCCceEEECCCcc
Confidence            9999999999999997533     1348999999999999999999976        56899999554   599999999


Q ss_pred             ceec
Q 039406          224 AKIA  227 (243)
Q Consensus       224 a~~~  227 (243)
                      |+.+
T Consensus       231 a~~~  234 (367)
T 3l9p_A          231 ARDI  234 (367)
T ss_dssp             HHHH
T ss_pred             cccc
Confidence            9865

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=99.90  E-value=2e-23  Score=173.88  Aligned_cols=132  Identities=20%  Similarity=0.293  Sum_probs=110.4

Q ss_pred             HhCCCCccceeeecCceEEEEEEecCCc-----------------hhHHHHHHHHHHHHhcCCCccceEEEEEE--eCCe
Q 039406           97 ATDGFSDANLLRQDGFGYVHRGVLPNGK-----------------EGEREFQAEVEIISRVHHKHLVSLVGYYT--AGSQ  157 (243)
Q Consensus        97 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~-----------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~--~~~~  157 (243)
                      ..++|.+.+.||+|+||.||++....+.                 ...+.+.+|+.+|++++|+||+++++++.  +.+.
T Consensus         3 l~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~   82 (305)
T 2wtk_C            3 LIGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQK   82 (305)
T ss_dssp             --CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---C
T ss_pred             cccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCe
Confidence            3478999999999999999999876542                 13467889999999999999999999984  4568


Q ss_pred             eEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          158 RMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       158 ~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      .|+||||+.++ |.+++.......+++..++.++.|++.||.|||.        +++|||++.++.+||+|||++.....
T Consensus        83 ~~lv~e~~~~~-l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~i~H~dlkp~NIl~~~~~~~kl~dfg~~~~~~~  161 (305)
T 2wtk_C           83 MYMVMEYCVCG-MQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLHSQGIVHKDIKPGNLLLTTGGTLKISALGVAEALHP  161 (305)
T ss_dssp             EEEEEECCSEE-HHHHHHHSTTCSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEECCT
T ss_pred             EEEEehhccCC-HHHHHHhCcccccCHHHHHHHHHHHHHHHHHHHHCCeeecCCCcccEEEcCCCcEEeeccccccccCc
Confidence            99999999876 7777765544569999999999999999999986        46899999999999999999998753

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=99.90  E-value=2.8e-24  Score=176.97  Aligned_cols=134  Identities=21%  Similarity=0.330  Sum_probs=115.0

Q ss_pred             HhCCCCccceeeecCceEEEEEEecCCch---------hHHHHHHHHHHHHhcCCCccceEEEEEEe-------------
Q 039406           97 ATDGFSDANLLRQDGFGYVHRGVLPNGKE---------GEREFQAEVEIISRVHHKHLVSLVGYYTA-------------  154 (243)
Q Consensus        97 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~---------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-------------  154 (243)
                      ..++|...+.||+|+||.||+|.+..+.+         ..+.+.+|+++|++++|+||+++++++..             
T Consensus         9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~   88 (284)
T 2a19_B            9 FGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNNEKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSSKNSS   88 (284)
T ss_dssp             HHHHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCSGGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC---------
T ss_pred             hccccceeeeeccCCceEEEEEEEcCCCeEEEEEEeccccHHHHHHHHHHHhCCCCCEEEEeeeEeccccCccccccccc
Confidence            44679999999999999999998764322         23567899999999999999999998864             


Q ss_pred             ---CCeeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCC
Q 039406          155 ---GSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGL  223 (243)
Q Consensus       155 ---~~~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~  223 (243)
                         ...+|+||||+++++|.+++.......+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+
T Consensus        89 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~  168 (284)
T 2a19_B           89 RSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSKKLINRDLKPSNIFLVDTKQVKIGDFGL  168 (284)
T ss_dssp             CCEEEEEEEEECCCCSCBHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCCTT
T ss_pred             ccCcceEEEEEeccCCCCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCCHHHEEEcCCCCEEECcchh
Confidence               4458999999999999999976544468999999999999999999986        46899999999999999999


Q ss_pred             ceecCCC
Q 039406          224 AKIASDV  230 (243)
Q Consensus       224 a~~~~~~  230 (243)
                      ++.+...
T Consensus       169 ~~~~~~~  175 (284)
T 2a19_B          169 VTSLKND  175 (284)
T ss_dssp             CEESSCC
T ss_pred             heecccc
Confidence            9987654

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=99.90  E-value=9.5e-24  Score=176.58  Aligned_cols=133  Identities=25%  Similarity=0.351  Sum_probs=111.5

Q ss_pred             HhCCCCccceeeecCceEEEEEEecCCch-----------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEecc
Q 039406           97 ATDGFSDANLLRQDGFGYVHRGVLPNGKE-----------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFV  165 (243)
Q Consensus        97 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~-----------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~  165 (243)
                      ..++|.+.+.||+|+||.||+|.+..+..           ..+.+.+|+.+|++++|+||+++++++...+.+|+||||+
T Consensus        27 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~  106 (314)
T 3com_A           27 PEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVESDLQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWIVMEYC  106 (314)
T ss_dssp             ---CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTSCCHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             chhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchHHHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEeecC
Confidence            34789999999999999999998765432           3577899999999999999999999999999999999999


Q ss_pred             CCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          166 LNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       166 ~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      ++++|.+++..... .+++..++.++.+++.||.|||.        +++|||++.++.+||+|||++..+...
T Consensus       107 ~~~~L~~~~~~~~~-~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~  178 (314)
T 3com_A          107 GAGSVSDIIRLRNK-TLTEDEIATILQSTLKGLEYLHFMRKIHRDIKAGNILLNTEGHAKLADFGVAGQLTDT  178 (314)
T ss_dssp             TTEEHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECBTT
T ss_pred             CCCCHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHHhCCCcCCCcCHHHEEECCCCCEEEeecccchhhhhh
Confidence            99999999864332 58999999999999999999987        458999999999999999999887543

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=99.90  E-value=3.2e-24  Score=178.02  Aligned_cols=131  Identities=24%  Similarity=0.364  Sum_probs=110.0

Q ss_pred             CCCCccceeeecCceEEEEEEec----CC-------------chhHHHHHHHHHHHHhcCCCccceEEEEEEe--CCeeE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLP----NG-------------KEGEREFQAEVEIISRVHHKHLVSLVGYYTA--GSQRM  159 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~----~~-------------~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~--~~~~~  159 (243)
                      ++|++.+.||+|+||.||+|++.    .+             ....+.+.+|+.+|++++|+||+++++++..  ...++
T Consensus        10 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   89 (295)
T 3ugc_A           10 RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLK   89 (295)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHHTSCE
T ss_pred             HHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCceE
Confidence            67999999999999999999842    11             1245678999999999999999999999864  35689


Q ss_pred             EEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          160 LVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       160 lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      +|||||++++|.+++..... .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++.+...
T Consensus        90 lv~e~~~~~~L~~~l~~~~~-~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~~~~~~~~  167 (295)
T 3ugc_A           90 LIMEYLPYGSLRDYLQKHKE-RIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQD  167 (295)
T ss_dssp             EEEECCTTCBHHHHHHHCGG-GCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECCCCSCC-----
T ss_pred             EEEEeCCCCCHHHHHHhccc-ccCHHHHHHHHHHHHHHHHHHhcCCcccCCCCHhhEEEcCCCeEEEccCcccccccCC
Confidence            99999999999999976543 48999999999999999999986        468999999999999999999987543

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=99.90  E-value=8.8e-24  Score=175.30  Aligned_cols=131  Identities=23%  Similarity=0.321  Sum_probs=113.3

Q ss_pred             HhCCCCccceeeecCceEEEEEEecCCc------------hhHHHHHHHHHHHHhcCCCccceEEEEEEe----------
Q 039406           97 ATDGFSDANLLRQDGFGYVHRGVLPNGK------------EGEREFQAEVEIISRVHHKHLVSLVGYYTA----------  154 (243)
Q Consensus        97 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~----------  154 (243)
                      ..++|.+.+.||+|+||.||+|+...+.            ...+.+.+|+.+|++++|+||+++++++.+          
T Consensus         4 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~   83 (303)
T 1zy4_A            4 YASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHTEEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMTA   83 (303)
T ss_dssp             HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEEHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC----
T ss_pred             ccccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEeccHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhcc
Confidence            3467999999999999999999865433            245678899999999999999999998865          


Q ss_pred             ---CCeeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCC
Q 039406          155 ---GSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGL  223 (243)
Q Consensus       155 ---~~~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~  223 (243)
                         .+..|+||||+++++|.+++..... .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+
T Consensus        84 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~-~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dlkp~Nil~~~~~~~kl~dfg~  162 (303)
T 1zy4_A           84 VKKKSTLFIQMEYCENGTLYDLIHSENL-NQQRDEYWRLFRQILEALSYIHSQGIIHRDLKPMNIFIDESRNVKIGDFGL  162 (303)
T ss_dssp             --CEEEEEEEEECCCSCBHHHHHHHSCG-GGCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECCCCC
T ss_pred             cccCCceEEEEecCCCCCHHHhhhcccc-ccchHHHHHHHHHHHHHHHHHHhCCeecccCCHHhEEEcCCCCEEEeeCcc
Confidence               3568999999999999999975432 47888999999999999999986        45899999999999999999


Q ss_pred             ceecC
Q 039406          224 AKIAS  228 (243)
Q Consensus       224 a~~~~  228 (243)
                      ++.+.
T Consensus       163 ~~~~~  167 (303)
T 1zy4_A          163 AKNVH  167 (303)
T ss_dssp             CSCTT
T ss_pred             hhhcc
Confidence            98765

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=99.90  E-value=1.2e-23  Score=173.31  Aligned_cols=135  Identities=19%  Similarity=0.246  Sum_probs=114.6

Q ss_pred             HhCCCCccceeeecCceEEEEEEecCCc---------------hhHHHHHHHHHHHHhc-CCCccceEEEEEEeCCeeEE
Q 039406           97 ATDGFSDANLLRQDGFGYVHRGVLPNGK---------------EGEREFQAEVEIISRV-HHKHLVSLVGYYTAGSQRML  160 (243)
Q Consensus        97 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~---------------~~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~~~l  160 (243)
                      ..++|.+.+.||+|+||.||+|.+..+.               .....+.+|+..+..+ +||||+++++++.+.+..|+
T Consensus         9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~l   88 (289)
T 1x8b_A            9 YTTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHMLI   88 (289)
T ss_dssp             HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEEE
T ss_pred             ccchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEE
Confidence            3477999999999999999999876432               2456788999999999 99999999999999999999


Q ss_pred             EEeccCCCCHHHHhccCC--CCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCC-----------------
Q 039406          161 VYEFVLNNTLVFHLHGKG--QPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFK-----------------  213 (243)
Q Consensus       161 v~e~~~~g~L~~~l~~~~--~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~-----------------  213 (243)
                      ||||+++++|.+++....  ...+++..++.++.|++.||.|||.        +|+|||++.+                 
T Consensus        89 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dikp~NIl~~~~~~~~~~~~~~~~~~~~~  168 (289)
T 1x8b_A           89 QNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIHSMSLVHMDIKPSNIFISRTSIPNAASEEGDEDDWAS  168 (289)
T ss_dssp             EEECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEC-------------------
T ss_pred             EEEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHhCCEeecCCCHHHEEEcCCCCCcccccccccccccC
Confidence            999999999999997532  1358999999999999999999976        5689999844                 


Q ss_pred             --CcEEEeccCCceecCCCC
Q 039406          214 --FEAKVADFGLAKIASDVN  231 (243)
Q Consensus       214 --~~~kl~DFG~a~~~~~~~  231 (243)
                        ..+||+|||++.......
T Consensus       169 ~~~~~kl~Dfg~~~~~~~~~  188 (289)
T 1x8b_A          169 NKVMFKIGDLGHVTRISSPQ  188 (289)
T ss_dssp             -CCCEEECCCTTCEETTCSC
T ss_pred             CceEEEEcccccccccCCcc
Confidence              489999999999876543

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=99.90  E-value=3.4e-23  Score=175.09  Aligned_cols=136  Identities=26%  Similarity=0.307  Sum_probs=116.9

Q ss_pred             HHHHHhCCCCccceeeecCceEEEEEEecCCc--------hhHHHHHHHHHHHHh--cCCCccceEEEEEEeCC----ee
Q 039406           93 ELARATDGFSDANLLRQDGFGYVHRGVLPNGK--------EGEREFQAEVEIISR--VHHKHLVSLVGYYTAGS----QR  158 (243)
Q Consensus        93 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~--------~~~~~~~~E~~~l~~--l~hp~iv~~~~~~~~~~----~~  158 (243)
                      ......++|.+.+.||+|+||.||+|++....        .....+.+|+++++.  ++|+||+++++++...+    .+
T Consensus        36 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~vavK~~~~~~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~~~~~~~  115 (342)
T 1b6c_B           36 VQRTIARTIVLQESIGKGRFGEVWRGKWRGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQL  115 (342)
T ss_dssp             HHHHHHHHCEEEEEEEEETTEEEEEEEETTEEEEEEEECGGGHHHHHHHHHHHHHSCCCCTTBCCEEEEEECCCSSCCCE
T ss_pred             ecccccccEEEEeeecCCCCcEEEEEEEcCccEEEEEeCchhHHHHHHHHHHHHHhhcCCCcEEEEEeeecccCCcccee
Confidence            33455678999999999999999999875322        245677889999887  78999999999998776    79


Q ss_pred             EEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhh--------c--------CCCcEEECCCCcEEEeccC
Q 039406          159 MLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLH--------D--------DLANILLDFKFEAKVADFG  222 (243)
Q Consensus       159 ~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH--------~--------~~~NiLl~~~~~~kl~DFG  222 (243)
                      |+||||+++|+|.+++...   .+++..++.++.|++.||.|||        .        +++|||++.++.+||+|||
T Consensus       116 ~lv~e~~~~g~L~~~l~~~---~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~NIll~~~~~~kL~Dfg  192 (342)
T 1b6c_B          116 WLVSDYHEHGSLFDYLNRY---TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLG  192 (342)
T ss_dssp             EEEECCCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCSGGGEEECTTSCEEECCCT
T ss_pred             EEEEeecCCCcHHHHHhcc---CccHHHHHHHHHHHHHHHHHHHHHHhhhcccCCeeeCCCCHHHEEECCCCCEEEEECC
Confidence            9999999999999999754   4899999999999999999999        4        5689999999999999999


Q ss_pred             CceecCCCC
Q 039406          223 LAKIASDVN  231 (243)
Q Consensus       223 ~a~~~~~~~  231 (243)
                      +++......
T Consensus       193 ~~~~~~~~~  201 (342)
T 1b6c_B          193 LAVRHDSAT  201 (342)
T ss_dssp             TCEEEETTT
T ss_pred             Cceeccccc
Confidence            999876544

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=99.90  E-value=3.2e-24  Score=181.08  Aligned_cols=131  Identities=18%  Similarity=0.265  Sum_probs=109.1

Q ss_pred             HhCCCCccceeeecCceEEEEEEecCCch---------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEE
Q 039406           97 ATDGFSDANLLRQDGFGYVHRGVLPNGKE---------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLV  161 (243)
Q Consensus        97 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~---------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv  161 (243)
                      ..++|.+.+.||+|+||.||+|+...+.+               ..+.+.+|+.+|++++|+||+++++++.+.+.+|+|
T Consensus        32 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv  111 (329)
T 3gbz_A           32 SIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHNHRLHLI  111 (329)
T ss_dssp             CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEETTEEEEE
T ss_pred             chhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEecCCEEEEE
Confidence            34789999999999999999997654321               245678999999999999999999999999999999


Q ss_pred             EeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEE-----CCCCcEEEeccCCceecC
Q 039406          162 YEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILL-----DFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       162 ~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl-----~~~~~~kl~DFG~a~~~~  228 (243)
                      ||||++ +|.+++....  .+++..++.++.|++.||.|||.        +++|||+     +.++.+||+|||+++.+.
T Consensus       112 ~e~~~~-~L~~~~~~~~--~~~~~~~~~i~~ql~~~l~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~a~~~~  188 (329)
T 3gbz_A          112 FEYAEN-DLKKYMDKNP--DVSMRVIKSFLYQLINGVNFCHSRRCLHRDLKPQNLLLSVSDASETPVLKIGDFGLARAFG  188 (329)
T ss_dssp             EECCSE-EHHHHHHHCT--TCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEC-----CCEEEECCTTHHHHHC
T ss_pred             EecCCC-CHHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHHhCCEECCCCCHHHEEEecCCCCccceEEECcCCCccccC
Confidence            999975 9999997654  48999999999999999999986        5689999     455669999999998775


Q ss_pred             CC
Q 039406          229 DV  230 (243)
Q Consensus       229 ~~  230 (243)
                      ..
T Consensus       189 ~~  190 (329)
T 3gbz_A          189 IP  190 (329)
T ss_dssp             --
T ss_pred             Cc
Confidence            43

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=99.90  E-value=1.3e-23  Score=173.09  Aligned_cols=130  Identities=22%  Similarity=0.320  Sum_probs=114.0

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch-------------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE-------------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRM  159 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~-------------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~  159 (243)
                      ++|.+.+.||+|+||.||+|+...+.+                   ..+.+.+|+.+|++++|+||+++++++.+.+..|
T Consensus         5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~   84 (283)
T 3bhy_A            5 DHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDVV   84 (283)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             hhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCCeEE
Confidence            568999999999999999998764321                   3577899999999999999999999999999999


Q ss_pred             EEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCC----cEEEeccCCceec
Q 039406          160 LVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKF----EAKVADFGLAKIA  227 (243)
Q Consensus       160 lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~----~~kl~DFG~a~~~  227 (243)
                      +||||+++++|.+++....  .+++..++.++.|++.||.|||.        +++|||++.++    .+||+|||+++.+
T Consensus        85 lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~~~~kl~dfg~~~~~  162 (283)
T 3bhy_A           85 LILELVSGGELFDFLAEKE--SLTEDEATQFLKQILDGVHYLHSKRIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHKI  162 (283)
T ss_dssp             EEEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCSSSSSCCEEECCCTTCEEC
T ss_pred             EEEeecCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCCccCCCCChHHEEEecCCCCCCceEEEecccceec
Confidence            9999999999999997543  48999999999999999999986        45899998877    8999999999987


Q ss_pred             CCC
Q 039406          228 SDV  230 (243)
Q Consensus       228 ~~~  230 (243)
                      ...
T Consensus       163 ~~~  165 (283)
T 3bhy_A          163 EAG  165 (283)
T ss_dssp             C--
T ss_pred             cCC
Confidence            543

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=99.90  E-value=6.8e-24  Score=187.30  Aligned_cols=138  Identities=20%  Similarity=0.230  Sum_probs=108.5

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCc---------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeC------C
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGK---------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAG------S  156 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~---------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~------~  156 (243)
                      .++|.+.+.||+|+||.||+|++..+.               ...+.+.+|+.+|+.++|+||+++++++...      .
T Consensus        61 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~  140 (464)
T 3ttj_A           61 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQ  140 (464)
T ss_dssp             ETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCC
T ss_pred             cCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccCC
Confidence            478999999999999999999765532               2456788999999999999999999999754      3


Q ss_pred             eeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          157 QRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       157 ~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      .+|||||||++ +|.+.+..    .+++..++.++.|++.||.|||.        |++|||++.++.+||+|||+|+...
T Consensus       141 ~~~lv~E~~~~-~l~~~~~~----~l~~~~~~~~~~qil~aL~~lH~~~iiHrDlkp~NIll~~~~~~kl~DFG~a~~~~  215 (464)
T 3ttj_A          141 DVYLVMELMDA-NLCQVIQM----ELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAG  215 (464)
T ss_dssp             EEEEEEECCSE-EHHHHHTS----CCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCCCC----
T ss_pred             eEEEEEeCCCC-CHHHHHhh----cCCHHHHHHHHHHHHHHHHHHHHCCcccCCCChHhEEEeCCCCEEEEEEEeeeecC
Confidence            57999999976 57666643    38899999999999999999976        5689999999999999999999875


Q ss_pred             CCCceeeecccccc
Q 039406          229 DVNTHVSTRVMGTF  242 (243)
Q Consensus       229 ~~~~~~~~~~~GT~  242 (243)
                      ....  .+..+||+
T Consensus       216 ~~~~--~~~~~gt~  227 (464)
T 3ttj_A          216 TSFM--MTPYVVTR  227 (464)
T ss_dssp             -CCC--C----CCC
T ss_pred             CCcc--cCCCcccc
Confidence            4322  23456665

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=99.90  E-value=2.9e-24  Score=184.70  Aligned_cols=129  Identities=26%  Similarity=0.369  Sum_probs=104.2

Q ss_pred             CCCccceeeecCceEEEEEEecCC-----------------chhHHHHHHHHHHHHhcCCCccceEEEEEE-eCCeeEEE
Q 039406          100 GFSDANLLRQDGFGYVHRGVLPNG-----------------KEGEREFQAEVEIISRVHHKHLVSLVGYYT-AGSQRMLV  161 (243)
Q Consensus       100 ~~~~~~~lg~G~~g~V~~~~~~~~-----------------~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~-~~~~~~lv  161 (243)
                      .|...+.||+|+||.||+|.+...                 ....+.+.+|+.+|++++||||+++++++. .++..|+|
T Consensus        90 ~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~lv  169 (373)
T 3c1x_A           90 IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVV  169 (373)
T ss_dssp             EEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCCEEE
T ss_pred             eeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCeEEE
Confidence            356678999999999999975422                 124577899999999999999999999875 45688999


Q ss_pred             EeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          162 YEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       162 ~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      |||+++|+|.+++..... .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++.+..
T Consensus       170 ~e~~~~g~L~~~l~~~~~-~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~kL~DFG~a~~~~~  244 (373)
T 3c1x_A          170 LPYMKHGDLRNFIRNETH-NPTVKDLIGFGLQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYD  244 (373)
T ss_dssp             EECCTTCBHHHHHHCTTC-CCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCC--------
T ss_pred             EECCCCCCHHHHHhhccc-CCCHHHHHHHHHHHHHHHHHHHHCCEecCccchheEEECCCCCEEEeeccccccccc
Confidence            999999999999976543 48899999999999999999976        45899999999999999999987644

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=99.90  E-value=1.8e-24  Score=181.66  Aligned_cols=136  Identities=24%  Similarity=0.368  Sum_probs=115.6

Q ss_pred             HHHhCCCCccceeeecCceEEEEEEecC-------------------CchhHHHHHHHHHHHHhcCCCccceEEEEEEeC
Q 039406           95 ARATDGFSDANLLRQDGFGYVHRGVLPN-------------------GKEGEREFQAEVEIISRVHHKHLVSLVGYYTAG  155 (243)
Q Consensus        95 ~~~~~~~~~~~~lg~G~~g~V~~~~~~~-------------------~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~  155 (243)
                      ....++|.+.+.||+|+||.||+|++..                   .......+.+|+.+|++++|+||+++++++.+.
T Consensus        21 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~  100 (322)
T 1p4o_A           21 EVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQG  100 (322)
T ss_dssp             BCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEECSS
T ss_pred             cchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCCEeeeEEEEccC
Confidence            3445789999999999999999987542                   012345688999999999999999999999999


Q ss_pred             CeeEEEEeccCCCCHHHHhccCC--------CCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEe
Q 039406          156 SQRMLVYEFVLNNTLVFHLHGKG--------QPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVA  219 (243)
Q Consensus       156 ~~~~lv~e~~~~g~L~~~l~~~~--------~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~  219 (243)
                      +..|+||||+++++|.+++....        ...+++..++.++.|++.||.|||.        +++|||++.++.+||+
T Consensus       101 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~NIli~~~~~~kl~  180 (322)
T 1p4o_A          101 QPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIG  180 (322)
T ss_dssp             SSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCSGGGEEECTTCCEEEC
T ss_pred             CccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHHCCCccCCCccceEEEcCCCeEEEC
Confidence            99999999999999999986522        1247899999999999999999986        4689999999999999


Q ss_pred             ccCCceecCCC
Q 039406          220 DFGLAKIASDV  230 (243)
Q Consensus       220 DFG~a~~~~~~  230 (243)
                      |||+++.....
T Consensus       181 Dfg~~~~~~~~  191 (322)
T 1p4o_A          181 DFGMTRDIYET  191 (322)
T ss_dssp             CTTCCCGGGGG
T ss_pred             cCccccccccc
Confidence            99999876543

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=99.90  E-value=1.1e-23  Score=177.07  Aligned_cols=133  Identities=23%  Similarity=0.327  Sum_probs=113.6

Q ss_pred             HhCCCCccceeeecCceEEEEEEecCCc------------hhHHHHHHHHHHHHhc-CCCccceEEEEEEe------CCe
Q 039406           97 ATDGFSDANLLRQDGFGYVHRGVLPNGK------------EGEREFQAEVEIISRV-HHKHLVSLVGYYTA------GSQ  157 (243)
Q Consensus        97 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~------------~~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~------~~~  157 (243)
                      ..++|.+.+.||+|+||.||+|++..+.            .....+.+|+.+|+++ +|+||+++++++..      .+.
T Consensus        22 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~~~  101 (326)
T 2x7f_A           22 PAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMDDQ  101 (326)
T ss_dssp             CTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSSTTHHHHHHHHHHHHHCCSTTBCCEEEEEEECC--CCCCE
T ss_pred             CCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCcccHHHHHHHHHHHHhccCCCCeeeeeeEEeeccCccccce
Confidence            4578999999999999999999875432            2457789999999999 79999999999987      568


Q ss_pred             eEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          158 RMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       158 ~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      +|+||||+++++|.+++.......+++..++.++.|++.||.|||.        +++|||++.++.+||+|||++..+..
T Consensus       102 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~  181 (326)
T 2x7f_A          102 LWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDR  181 (326)
T ss_dssp             EEEEEECCTTEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEECTTCCEEECCCTTTC----
T ss_pred             EEEEEEcCCCCcHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCcHHHEEEcCCCCEEEeeCcCceecCc
Confidence            9999999999999999976544468999999999999999999986        45899999999999999999987654

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=99.90  E-value=7.3e-24  Score=178.07  Aligned_cols=133  Identities=23%  Similarity=0.348  Sum_probs=104.0

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCc------------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCee-
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGK------------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQR-  158 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~------------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~-  158 (243)
                      .++|.+.+.||+|+||.||+|.+..+.                  ...+.+.+|+.+|++++|+||+++++++...+.. 
T Consensus        22 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~  101 (323)
T 3qup_A           22 EQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSRAKG  101 (323)
T ss_dssp             ---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC----
T ss_pred             hhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeecccccc
Confidence            467999999999999999999865432                  2356789999999999999999999999877655 


Q ss_pred             -----EEEEeccCCCCHHHHhccCC----CCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEecc
Q 039406          159 -----MLVYEFVLNNTLVFHLHGKG----QPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADF  221 (243)
Q Consensus       159 -----~lv~e~~~~g~L~~~l~~~~----~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DF  221 (243)
                           ++||||+.+++|.+++....    ...+++..++.++.|++.||.|||.        +|+|||++.++.+||+||
T Consensus       102 ~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~ivH~Dikp~NIli~~~~~~kl~Df  181 (323)
T 3qup_A          102 RLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSSRNFIHRDLAARNCMLAEDMTVCVADF  181 (323)
T ss_dssp             ---CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTSCEEECCC
T ss_pred             CCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHHcCCcccCCCCcceEEEcCCCCEEEeec
Confidence                 99999999999999885422    1248999999999999999999986        568999999999999999


Q ss_pred             CCceecCCC
Q 039406          222 GLAKIASDV  230 (243)
Q Consensus       222 G~a~~~~~~  230 (243)
                      |+++.+...
T Consensus       182 g~a~~~~~~  190 (323)
T 3qup_A          182 GLSRKIYSG  190 (323)
T ss_dssp             CC-------
T ss_pred             ccccccccc
Confidence            999876543

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=99.90  E-value=2.9e-24  Score=181.21  Aligned_cols=133  Identities=24%  Similarity=0.363  Sum_probs=115.1

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCc-------------------hhHHHHHHHHHHHHhc-CCCccceEEEEEEeCCe
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGK-------------------EGEREFQAEVEIISRV-HHKHLVSLVGYYTAGSQ  157 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~-------------------~~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~  157 (243)
                      .++|.+.+.||+|+||.||+|......                   ...+.+.+|+.+|+++ +|+||+++++++...+.
T Consensus        45 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~  124 (333)
T 2i1m_A           45 RNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHGGP  124 (333)
T ss_dssp             TTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred             HHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEEecCCc
Confidence            478999999999999999999864321                   1356789999999999 89999999999999999


Q ss_pred             eEEEEeccCCCCHHHHhccCC------------CCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEE
Q 039406          158 RMLVYEFVLNNTLVFHLHGKG------------QPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAK  217 (243)
Q Consensus       158 ~~lv~e~~~~g~L~~~l~~~~------------~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~k  217 (243)
                      +|+|||||++|+|.+++....            ...+++..++.++.|++.||.|||.        +++|||++.++.+|
T Consensus       125 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~NIl~~~~~~~k  204 (333)
T 2i1m_A          125 VLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASKNCIHRDVAARNVLLTNGHVAK  204 (333)
T ss_dssp             CEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGCEEEGGGEEE
T ss_pred             eEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhcCCcccCCcccceEEECCCCeEE
Confidence            999999999999999986431            2247899999999999999999986        46899999999999


Q ss_pred             EeccCCceecCCC
Q 039406          218 VADFGLAKIASDV  230 (243)
Q Consensus       218 l~DFG~a~~~~~~  230 (243)
                      |+|||+++.+...
T Consensus       205 l~Dfg~~~~~~~~  217 (333)
T 2i1m_A          205 IGDFGLARDIMND  217 (333)
T ss_dssp             BCCCGGGCCGGGC
T ss_pred             ECccccccccccc
Confidence            9999999876543

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=99.90  E-value=6.5e-24  Score=175.00  Aligned_cols=131  Identities=26%  Similarity=0.388  Sum_probs=111.5

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCc-----------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEE
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGK-----------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRML  160 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~-----------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~l  160 (243)
                      .++|.+.+.||+|+||.||+|++....                 ...+.+.+|+.+|++++|+||+++++++.+ +..|+
T Consensus        11 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~~~   89 (281)
T 3cc6_A           11 REDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEE-EPTWI   89 (281)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEECS-SSCEE
T ss_pred             ccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEcC-CCCEE
Confidence            368999999999999999999754321                 245778999999999999999999999765 46789


Q ss_pred             EEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          161 VYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       161 v~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      ||||+.+++|.+++..... .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++.....
T Consensus        90 v~e~~~~~~L~~~l~~~~~-~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~  166 (281)
T 3cc6_A           90 IMELYPYGELGHYLERNKN-SLKVLTLVLYSLQICKAMAYLESINCVHRDIAVRNILVASPECVKLGDFGLSRYIEDE  166 (281)
T ss_dssp             EEECCTTCBHHHHHHHHTT-TCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEEEETTEEEECCCCGGGCC---
T ss_pred             EEecCCCCCHHHHHHhccc-cCCHHHHHHHHHHHHHHHHHHHHCCcccCCCccceEEECCCCcEEeCccCCCcccccc
Confidence            9999999999999975433 48999999999999999999986        468999999999999999999877543

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=99.90  E-value=2.4e-23  Score=175.53  Aligned_cols=134  Identities=25%  Similarity=0.306  Sum_probs=111.2

Q ss_pred             HHHhCCCCccceeeecCceEEEEEEecCCch--------hHHHHHHHHHHHHhc--CCCccceEEEEEEeC----CeeEE
Q 039406           95 ARATDGFSDANLLRQDGFGYVHRGVLPNGKE--------GEREFQAEVEIISRV--HHKHLVSLVGYYTAG----SQRML  160 (243)
Q Consensus        95 ~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~--------~~~~~~~E~~~l~~l--~hp~iv~~~~~~~~~----~~~~l  160 (243)
                      ....++|.+.+.||+|+||.||+|++.....        ....+.+|.+++..+  +|+||+++++++...    ..+|+
T Consensus        33 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~vavK~~~~~~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~l  112 (337)
T 3mdy_A           33 RTIAKQIQMVKQIGKGRYGEVWMGKWRGEKVAVKVFFTTEEASWFRETEIYQTVLMRHENILGFIAADIKGTGSWTQLYL  112 (337)
T ss_dssp             TTHHHHCEEEEEEEEETTEEEEEEEETTEEEEEEEEEGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEESCGGGCEEEE
T ss_pred             cccccceEEEeEeecCCCeEEEEEEECCceEEEEEEeccccchhhhHHHHHHHHhhcCCCeeeEEEEEccCCCCCCceEE
Confidence            3455789999999999999999998764321        344556666666655  899999999999887    78999


Q ss_pred             EEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc----------------CCCcEEECCCCcEEEeccCCc
Q 039406          161 VYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD----------------DLANILLDFKFEAKVADFGLA  224 (243)
Q Consensus       161 v~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~----------------~~~NiLl~~~~~~kl~DFG~a  224 (243)
                      |||||++|+|.+++...   .+++..++.++.|++.||.|||.                |++|||++.++.+||+|||+|
T Consensus       113 v~e~~~~g~L~~~l~~~---~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kl~Dfg~a  189 (337)
T 3mdy_A          113 ITDYHENGSLYDYLKST---TLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLA  189 (337)
T ss_dssp             EECCCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTC
T ss_pred             EEeccCCCcHHHHhhcc---CCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCEEecccchHHEEECCCCCEEEEeCCCc
Confidence            99999999999999654   48999999999999999999994                358999999999999999999


Q ss_pred             eecCCCC
Q 039406          225 KIASDVN  231 (243)
Q Consensus       225 ~~~~~~~  231 (243)
                      +.+....
T Consensus       190 ~~~~~~~  196 (337)
T 3mdy_A          190 VKFISDT  196 (337)
T ss_dssp             EECC---
T ss_pred             eeecccc
Confidence            8775443

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=99.90  E-value=1.7e-23  Score=174.83  Aligned_cols=132  Identities=15%  Similarity=0.201  Sum_probs=106.3

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc----------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK----------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVY  162 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~----------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  162 (243)
                      ++|.+.+.||+|+||.||+|....+.                .....+.+|+.+|++++|+||+++++++...+..++||
T Consensus        32 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~  111 (310)
T 2wqm_A           32 ANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVL  111 (310)
T ss_dssp             GGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             cceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCcEEEEE
Confidence            67999999999999999999754322                24567889999999999999999999999999999999


Q ss_pred             eccCCCCHHHHhccC--CCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          163 EFVLNNTLVFHLHGK--GQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       163 e~~~~g~L~~~l~~~--~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      ||+++++|.+++...  ....+++..++.++.+++.||.|||.        +++|||++.++.+||+|||+++.+...
T Consensus       112 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dl~p~NIl~~~~~~~kl~Dfg~~~~~~~~  189 (310)
T 2wqm_A          112 ELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSK  189 (310)
T ss_dssp             ECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCC---------
T ss_pred             ecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHhhCCeeCCCCcHHHEEEcCCCCEEEEeccceeeecCC
Confidence            999999999988641  22358999999999999999999986        458999999999999999999876543

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=99.90  E-value=8.7e-24  Score=178.41  Aligned_cols=130  Identities=22%  Similarity=0.367  Sum_probs=109.3

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc------------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK------------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRML  160 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~------------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~l  160 (243)
                      ++|.+.+.||+|+||.||+|.+..+.                  ...+.+.+|+.+|++++|+||+++++++.... .++
T Consensus        15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-~~~   93 (327)
T 3lzb_A           15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQL   93 (327)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESSS-EEE
T ss_pred             hHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecCC-ceE
Confidence            67999999999999999999864432                  24678899999999999999999999998754 889


Q ss_pred             EEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          161 VYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       161 v~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      ||||+.+|+|.+++..... .+++..++.++.|++.||.|||.        ||+|||++.++.+||+|||+++.+...
T Consensus        94 v~~~~~~g~L~~~l~~~~~-~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~~kL~DfG~a~~~~~~  170 (327)
T 3lzb_A           94 ITQLMPFGCLLDYVREHKD-NIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAE  170 (327)
T ss_dssp             EECCCSSCBHHHHHHHTTT-CCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEETTEEEECCTTC-------
T ss_pred             EEEecCCCcHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHhhCCCcCCCCCHHHEEEcCCCCEEEccCcceeEccCc
Confidence            9999999999999976543 48999999999999999999986        568999999999999999999987543

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=99.90  E-value=2.2e-23  Score=172.52  Aligned_cols=129  Identities=21%  Similarity=0.264  Sum_probs=110.2

Q ss_pred             CCCccceeeecCceEEEEEEecCCc---------------hhHHHHHHHHHHHHhcCCCccceEEEEEEe----CCeeEE
Q 039406          100 GFSDANLLRQDGFGYVHRGVLPNGK---------------EGEREFQAEVEIISRVHHKHLVSLVGYYTA----GSQRML  160 (243)
Q Consensus       100 ~~~~~~~lg~G~~g~V~~~~~~~~~---------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~----~~~~~l  160 (243)
                      .|.+.+.||+|+||.||+|.+..+.               ...+.+.+|+.+|++++|+||+++++++..    ...+|+
T Consensus        27 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~l  106 (290)
T 1t4h_A           27 FLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVL  106 (290)
T ss_dssp             EEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEE
T ss_pred             eEEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceEEE
Confidence            4677889999999999999865543               245678899999999999999999999875    456899


Q ss_pred             EEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc----------CCCcEEEC-CCCcEEEeccCCceecCC
Q 039406          161 VYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD----------DLANILLD-FKFEAKVADFGLAKIASD  229 (243)
Q Consensus       161 v~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~----------~~~NiLl~-~~~~~kl~DFG~a~~~~~  229 (243)
                      ||||+++++|.+++....  .+++..++.++.|++.||.|||.          +++|||++ .++.+||+|||++.....
T Consensus       107 v~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~~~i~H~dikp~Nil~~~~~~~~kl~Dfg~~~~~~~  184 (290)
T 1t4h_A          107 VTELMTSGTLKTYLKRFK--VMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRA  184 (290)
T ss_dssp             EEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHTSSSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCCT
T ss_pred             EEEecCCCCHHHHHHHcc--CCCHHHHHHHHHHHHHHHHHHHcCCCCEEECCCCHHHEEEECCCCCEEEeeCCCcccccc
Confidence            999999999999997643  48999999999999999999986          34799997 789999999999976544


Q ss_pred             C
Q 039406          230 V  230 (243)
Q Consensus       230 ~  230 (243)
                      .
T Consensus       185 ~  185 (290)
T 1t4h_A          185 S  185 (290)
T ss_dssp             T
T ss_pred             c
Confidence            3

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=99.90  E-value=2.5e-23  Score=174.18  Aligned_cols=128  Identities=19%  Similarity=0.310  Sum_probs=109.5

Q ss_pred             CCCCcc-ceeeecCceEEEEEEecCCc-------------hhHHHHHHHHHHHHhc-CCCccceEEEEEEeCCeeEEEEe
Q 039406           99 DGFSDA-NLLRQDGFGYVHRGVLPNGK-------------EGEREFQAEVEIISRV-HHKHLVSLVGYYTAGSQRMLVYE  163 (243)
Q Consensus        99 ~~~~~~-~~lg~G~~g~V~~~~~~~~~-------------~~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~~~lv~e  163 (243)
                      +.|.+. +.||+|+||.||+|+...+.             ...+.+.+|+.+|+++ +|+||+++++++.+.+.+|+|||
T Consensus        12 ~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e   91 (316)
T 2ac3_A           12 DVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYLVFE   91 (316)
T ss_dssp             TSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             eeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEEEE
Confidence            667774 78999999999999865432             2467889999999995 79999999999999999999999


Q ss_pred             ccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCc---EEEeccCCceecC
Q 039406          164 FVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFE---AKVADFGLAKIAS  228 (243)
Q Consensus       164 ~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~---~kl~DFG~a~~~~  228 (243)
                      ||++++|.+++....  .+++..++.++.|++.||.|||.        +++|||++.++.   +||+|||+++.+.
T Consensus        92 ~~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~~~~  165 (316)
T 2ac3_A           92 KMRGGSILSHIHKRR--HFNELEASVVVQDVASALDFLHNKGIAHRDLKPENILCEHPNQVSPVKICDFDLGSGIK  165 (316)
T ss_dssp             CCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEESCSSSSCSEEECCTTCCC---
T ss_pred             cCCCCcHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHhCCceeCCCCHHHEEEccCCCcCceEEEEccCccccc
Confidence            999999999997654  48999999999999999999976        468999988765   9999999998764

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=99.90  E-value=1.6e-23  Score=173.74  Aligned_cols=128  Identities=23%  Similarity=0.365  Sum_probs=109.9

Q ss_pred             CCccceeeecCceEEEEEEecCCc-----------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCee-EEEE
Q 039406          101 FSDANLLRQDGFGYVHRGVLPNGK-----------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQR-MLVY  162 (243)
Q Consensus       101 ~~~~~~lg~G~~g~V~~~~~~~~~-----------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~-~lv~  162 (243)
                      |...++||+|+||.||+|.+..+.                 ...+.+.+|+.+|++++|+||+++++++.+.+.. ++||
T Consensus        23 ~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v~  102 (298)
T 3pls_A           23 THSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPHVLL  102 (298)
T ss_dssp             EEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEEE
T ss_pred             EccCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcEEEE
Confidence            455689999999999999754321                 2457788999999999999999999999876665 9999


Q ss_pred             eccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          163 EFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       163 e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      ||+.+++|.+++..... .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++.+..
T Consensus       103 e~~~~~~L~~~~~~~~~-~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~  176 (298)
T 3pls_A          103 PYMCHGDLLQFIRSPQR-NPTVKDLISFGLQVARGMEYLAEQKFVHRDLAARNCMLDESFTVKVADFGLARDILD  176 (298)
T ss_dssp             CCCTTCBHHHHHHCTTC-CCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTCCEEECCTTSSCTTTT
T ss_pred             ecccCCCHHHHHhcccc-CCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCcceEEEcCCCcEEeCcCCCcccccC
Confidence            99999999999976443 58999999999999999999986        46899999999999999999987644

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=99.90  E-value=5.7e-24  Score=181.97  Aligned_cols=130  Identities=16%  Similarity=0.194  Sum_probs=106.6

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch--------------h---------------HHHHHHHHHHHHhcCCCccceEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE--------------G---------------EREFQAEVEIISRVHHKHLVSLV  149 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~--------------~---------------~~~~~~E~~~l~~l~hp~iv~~~  149 (243)
                      ++|.+.+.||+|+||.||+|.+..+..              .               ...+..|+..+..++|+||++++
T Consensus        35 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~  114 (364)
T 3op5_A           35 AAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKYW  114 (364)
T ss_dssp             CEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCCEE
T ss_pred             CeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCeEE
Confidence            589999999999999999998765420              1               11234455667778899999999


Q ss_pred             EEEEeC----CeeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEEC--CCCc
Q 039406          150 GYYTAG----SQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLD--FKFE  215 (243)
Q Consensus       150 ~~~~~~----~~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~--~~~~  215 (243)
                      +++...    ...||||||| +++|.+++..... .+++..++.++.|++.||.|||.        |++|||++  .++.
T Consensus       115 ~~~~~~~~~~~~~~lv~e~~-g~~L~~~~~~~~~-~l~~~~~~~i~~qi~~~l~~lH~~~iiHrDlkp~Nill~~~~~~~  192 (364)
T 3op5_A          115 GSGLHDKNGKSYRFMIMDRF-GSDLQKIYEANAK-RFSRKTVLQLSLRILDILEYIHEHEYVHGDIKASNLLLNYKNPDQ  192 (364)
T ss_dssp             EEEEEEETTEEEEEEEEECE-EEEHHHHHHHTTS-CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEESSCTTC
T ss_pred             eeeeeccCCcceEEEEEeCC-CCCHHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHHHCCeEEecCCHHHEEEecCCCCe
Confidence            998764    4589999999 9999999976533 59999999999999999999976        56899998  8899


Q ss_pred             EEEeccCCceecCCC
Q 039406          216 AKVADFGLAKIASDV  230 (243)
Q Consensus       216 ~kl~DFG~a~~~~~~  230 (243)
                      +||+|||+|+.+...
T Consensus       193 ~kl~DFG~a~~~~~~  207 (364)
T 3op5_A          193 VYLVDYGLAYRYCPE  207 (364)
T ss_dssp             EEECCCTTCEESSGG
T ss_pred             EEEEECCcceecccC
Confidence            999999999987543

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=99.90  E-value=2.9e-23  Score=172.25  Aligned_cols=132  Identities=22%  Similarity=0.262  Sum_probs=115.9

Q ss_pred             HhCCCCccceeeecCceEEEEEEecCCch----------------------hHHHHHHHHHHHHhcC-CCccceEEEEEE
Q 039406           97 ATDGFSDANLLRQDGFGYVHRGVLPNGKE----------------------GEREFQAEVEIISRVH-HKHLVSLVGYYT  153 (243)
Q Consensus        97 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~----------------------~~~~~~~E~~~l~~l~-hp~iv~~~~~~~  153 (243)
                      ..++|.+.+.||+|+||.||+|....+.+                      ..+.+.+|+.+|+++. |+||+++++++.
T Consensus        15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~   94 (298)
T 1phk_A           15 FYENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYE   94 (298)
T ss_dssp             CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEE
T ss_pred             hhhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeec
Confidence            34789999999999999999998754321                      2456789999999995 999999999999


Q ss_pred             eCCeeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCce
Q 039406          154 AGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAK  225 (243)
Q Consensus       154 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~  225 (243)
                      ..+..|+||||+++++|.+++....  .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||++.
T Consensus        95 ~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~  172 (298)
T 1phk_A           95 TNTFFFLVFDLMKKGELFDYLTEKV--TLSEKETRKIMRALLEVICALHKLNIVHRDLKPENILLDDDMNIKLTDFGFSC  172 (298)
T ss_dssp             CSSEEEEEEECCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCE
T ss_pred             cCCeEEEEEeccCCCcHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCcceEEEcCCCcEEEecccchh
Confidence            9999999999999999999997643  48999999999999999999976        4589999999999999999998


Q ss_pred             ecCCC
Q 039406          226 IASDV  230 (243)
Q Consensus       226 ~~~~~  230 (243)
                      .+...
T Consensus       173 ~~~~~  177 (298)
T 1phk_A          173 QLDPG  177 (298)
T ss_dssp             ECCTT
T ss_pred             hcCCC
Confidence            87543

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.90  E-value=3.4e-24  Score=193.48  Aligned_cols=112  Identities=19%  Similarity=0.187  Sum_probs=94.8

Q ss_pred             hHHHHHHHHHHHHhc-CCCccceEEEEEEeCCeeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc-
Q 039406          126 GEREFQAEVEIISRV-HHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD-  203 (243)
Q Consensus       126 ~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~-  203 (243)
                      ..+.|.+|+++|+++ .|+||+++++++++++.+|||||||+|++|.++|...+  .++..   .|+.||+.||.|||+ 
T Consensus       284 ~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yLVMEyv~G~~L~d~i~~~~--~l~~~---~I~~QIl~AL~ylH~~  358 (569)
T 4azs_A          284 NKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLVMEKLPGRLLSDMLAAGE--EIDRE---KILGSLLRSLAALEKQ  358 (569)
T ss_dssp             HHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEEEEECCCSEEHHHHHHTTC--CCCHH---HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEEEEecCCCCcHHHHHHhCC--CCCHH---HHHHHHHHHHHHHHHC
Confidence            456799999999999 69999999999999999999999999999999998655  36653   478999999999976 


Q ss_pred             -------CCCcEEECCCCcEEEeccCCceecCCCCceeeeccccccC
Q 039406          204 -------DLANILLDFKFEAKVADFGLAKIASDVNTHVSTRVMGTFG  243 (243)
Q Consensus       204 -------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~~~~~~~~GT~G  243 (243)
                             ||+||||+.+|++||+|||+|+.+..... ..++.+||+|
T Consensus       359 GIIHRDIKPeNILL~~dg~vKL~DFGlAr~~~~~~~-~~~t~vGTp~  404 (569)
T 4azs_A          359 GFWHDDVRPWNVMVDARQHARLIDFGSIVTTPQDCS-WPTNLVQSFF  404 (569)
T ss_dssp             TCEESCCCGGGEEECTTSCEEECCCTTEESCC---C-CSHHHHHHHH
T ss_pred             CceeccCchHhEEECCCCCEEEeecccCeeCCCCCc-cccCceechh
Confidence                   67999999999999999999998765543 2345778864

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=99.90  E-value=2.2e-24  Score=181.76  Aligned_cols=130  Identities=23%  Similarity=0.316  Sum_probs=110.5

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch--------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEec
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE--------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEF  164 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~--------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  164 (243)
                      ++|.+.+.||+|+||.||+|+...+.+              ....+.+|+.+|++++|+||+++++++.+.+..|+||||
T Consensus         2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   81 (324)
T 3mtl_A            2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEY   81 (324)
T ss_dssp             CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred             CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEEEecc
Confidence            678999999999999999998765432              111345799999999999999999999999999999999


Q ss_pred             cCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          165 VLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       165 ~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      +. ++|.+++...+. .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++.....
T Consensus        82 ~~-~~l~~~~~~~~~-~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~  153 (324)
T 3mtl_A           82 LD-KDLKQYLDDCGN-IINMHNVKLFLFQLLRGLAYCHRQKVLHRDLKPQNLLINERGELKLADFGLARAKSIP  153 (324)
T ss_dssp             CS-EEHHHHHHHTTT-CCCHHHHHHHHHHHHHHHHHHHHTTEEESSCCGGGEEECTTCCEEECSSSEEECC---
T ss_pred             cc-cCHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHHHCCccCCCcCHHHEEECCCCCEEEccCcccccccCC
Confidence            97 489888876543 58999999999999999999986        568999999999999999999876543

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=99.90  E-value=4.1e-23  Score=173.45  Aligned_cols=128  Identities=25%  Similarity=0.358  Sum_probs=111.1

Q ss_pred             CCccceeeecCceEEEEEEecCC------------------chhHHHHHHHHHHHHhcCCCccceEEEEEEeC--CeeEE
Q 039406          101 FSDANLLRQDGFGYVHRGVLPNG------------------KEGEREFQAEVEIISRVHHKHLVSLVGYYTAG--SQRML  160 (243)
Q Consensus       101 ~~~~~~lg~G~~g~V~~~~~~~~------------------~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~--~~~~l  160 (243)
                      |.+.+.||+|+||.||++.+...                  ....+.+.+|+++|++++|+||+++++++.+.  ..+++
T Consensus        33 ~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~l  112 (318)
T 3lxp_A           33 LKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQL  112 (318)
T ss_dssp             EEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTTEEEE
T ss_pred             HhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCceEEE
Confidence            48899999999999988854311                  12456789999999999999999999999874  67899


Q ss_pred             EEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCC
Q 039406          161 VYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVN  231 (243)
Q Consensus       161 v~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~  231 (243)
                      ||||+++++|.+++....   +++..++.++.|++.+|.|||.        +++|||++.++.+||+|||+++.+....
T Consensus       113 v~e~~~~~~L~~~l~~~~---~~~~~~~~i~~~l~~~l~~LH~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~  188 (318)
T 3lxp_A          113 VMEYVPLGSLRDYLPRHS---IGLAQLLLFAQQICEGMAYLHAQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGH  188 (318)
T ss_dssp             EECCCTTCBHHHHGGGSC---CCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCGGGCEECCTTC
T ss_pred             EEecccCCcHHHHHhhCC---CCHHHHHHHHHHHHHHHHHHHhCCccCCCCchheEEEcCCCCEEECCccccccccccc
Confidence            999999999999997643   8999999999999999999986        4689999999999999999999876543

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=99.90  E-value=1.1e-23  Score=177.45  Aligned_cols=129  Identities=24%  Similarity=0.455  Sum_probs=112.8

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc----------------hhHHHHHHHHHHHHhc-CCCccceEEEEEEeCCeeEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK----------------EGEREFQAEVEIISRV-HHKHLVSLVGYYTAGSQRMLV  161 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~----------------~~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~~~lv  161 (243)
                      ++|.+.+.||+|+||.||+|++..+.                ...+.+.+|+++|+++ +|+||+++++++.+.+.+|+|
T Consensus        25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv  104 (327)
T 1fvr_A           25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLA  104 (327)
T ss_dssp             GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEE
T ss_pred             HHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeeeeCCceEEE
Confidence            68999999999999999999765432                1345688999999999 899999999999999999999


Q ss_pred             EeccCCCCHHHHhccCC--------------CCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEe
Q 039406          162 YEFVLNNTLVFHLHGKG--------------QPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVA  219 (243)
Q Consensus       162 ~e~~~~g~L~~~l~~~~--------------~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~  219 (243)
                      |||+++++|.+++....              ...+++..++.++.|++.||.|||.        +|+|||++.++.+||+
T Consensus       105 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIl~~~~~~~kL~  184 (327)
T 1fvr_A          105 IEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIA  184 (327)
T ss_dssp             ECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECGGGCEEEC
T ss_pred             EecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCCccCCCCccceEEEcCCCeEEEc
Confidence            99999999999997643              2358999999999999999999986        4689999999999999


Q ss_pred             ccCCceec
Q 039406          220 DFGLAKIA  227 (243)
Q Consensus       220 DFG~a~~~  227 (243)
                      |||+++..
T Consensus       185 Dfg~~~~~  192 (327)
T 1fvr_A          185 DFGLSRGQ  192 (327)
T ss_dssp             CTTCEESS
T ss_pred             ccCcCccc
Confidence            99999854

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=99.90  E-value=1.6e-23  Score=171.63  Aligned_cols=129  Identities=26%  Similarity=0.366  Sum_probs=105.8

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc---------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEe
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK---------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYE  163 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~---------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e  163 (243)
                      ++|...+.||+|+||.||+|.+....               ...+.+.+|+++++.++|+||+++++++.+.+..|+|||
T Consensus         7 ~~~~~~~~lg~G~~g~V~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   86 (271)
T 3dtc_A            7 AELTLEEIIGIGGFGKVYRAFWIGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLVME   86 (271)
T ss_dssp             TSEEEEEEEEEETTEEEEEEEETTEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC--CEEEEE
T ss_pred             hheeeeeeeccCCCeEEEEEEEcCCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEEEEE
Confidence            67899999999999999999765321               134678899999999999999999999999999999999


Q ss_pred             ccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc-----------CCCcEEECC--------CCcEEEeccCCc
Q 039406          164 FVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD-----------DLANILLDF--------KFEAKVADFGLA  224 (243)
Q Consensus       164 ~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~-----------~~~NiLl~~--------~~~~kl~DFG~a  224 (243)
                      |+++++|.+++...   .+++..++.++.|++.||.|||.           +++|||++.        ++.+||+|||++
T Consensus        87 ~~~~~~L~~~~~~~---~~~~~~~~~i~~~l~~~l~~lH~~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~Dfg~~  163 (271)
T 3dtc_A           87 FARGGPLNRVLSGK---RIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLA  163 (271)
T ss_dssp             CCTTEEHHHHHTSS---CCCHHHHHHHHHHHHHHHHHHHHSSSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEECCCCC-
T ss_pred             cCCCCCHHHHhhcC---CCCHHHHHHHHHHHHHHHHHHHhCCCCceeecCCchHHEEEecccccccccCcceEEccCCcc
Confidence            99999999998643   48999999999999999999976           348999986        678999999999


Q ss_pred             eecCCC
Q 039406          225 KIASDV  230 (243)
Q Consensus       225 ~~~~~~  230 (243)
                      +.+...
T Consensus       164 ~~~~~~  169 (271)
T 3dtc_A          164 REWHRT  169 (271)
T ss_dssp             ------
T ss_pred             cccccc
Confidence            876543

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=99.90  E-value=3.8e-23  Score=171.21  Aligned_cols=131  Identities=23%  Similarity=0.273  Sum_probs=111.6

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc-------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEecc
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK-------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFV  165 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~-------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~  165 (243)
                      ++|....+||+|+||.||+|.+..+.             ...+.+.+|+.+++.++|+||+++++++...+..++||||+
T Consensus        22 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~  101 (295)
T 2clq_A           22 DENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQV  101 (295)
T ss_dssp             CTTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             cCCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEEEEEEeC
Confidence            45666679999999999999865432             24577899999999999999999999999999999999999


Q ss_pred             CCCCHHHHhccCC-CCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECC-CCcEEEeccCCceecCC
Q 039406          166 LNNTLVFHLHGKG-QPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDF-KFEAKVADFGLAKIASD  229 (243)
Q Consensus       166 ~~g~L~~~l~~~~-~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~-~~~~kl~DFG~a~~~~~  229 (243)
                      ++++|.+++.... ...+++..+..++.|++.||.|||.        +++|||++. ++.+||+|||+++.+..
T Consensus       102 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~~~  175 (295)
T 2clq_A          102 PGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDNQIVHRDIKGDNVLINTYSGVLKISDFGTSKRLAG  175 (295)
T ss_dssp             SEEEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTCCEEECCTTTCEESCC
T ss_pred             CCCCHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHhCCEEccCCChhhEEEECCCCCEEEeecccccccCC
Confidence            9999999987653 2346788899999999999999987        458999987 89999999999998754

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=99.90  E-value=8.9e-24  Score=178.25  Aligned_cols=138  Identities=17%  Similarity=0.244  Sum_probs=116.1

Q ss_pred             HHHHHhCCCCcc-ceeeecCceEEEEEEecCCc---------------hhHHHHHHHHHHHHhc-CCCccceEEEEEEeC
Q 039406           93 ELARATDGFSDA-NLLRQDGFGYVHRGVLPNGK---------------EGEREFQAEVEIISRV-HHKHLVSLVGYYTAG  155 (243)
Q Consensus        93 ~~~~~~~~~~~~-~~lg~G~~g~V~~~~~~~~~---------------~~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~  155 (243)
                      ......+.|.+. +.||+|+||.||+|+...+.               .....+.+|+.+|+.+ +|+||+++++++.+.
T Consensus        22 ~~~~~~~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~~  101 (327)
T 3lm5_A           22 SMENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVYENT  101 (327)
T ss_dssp             CHHHHHHHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEEEECS
T ss_pred             HHHhhhhEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEEEEeC
Confidence            334455677776 89999999999999876542               1357889999999999 469999999999999


Q ss_pred             CeeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECC---CCcEEEeccCCc
Q 039406          156 SQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDF---KFEAKVADFGLA  224 (243)
Q Consensus       156 ~~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~---~~~~kl~DFG~a  224 (243)
                      +.+|+|||||.+|+|.+++.......+++..++.++.|++.||.|||.        +++|||++.   ++.+||+|||++
T Consensus       102 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~ql~~~L~~LH~~givH~Dikp~NIl~~~~~~~~~~kL~Dfg~a  181 (327)
T 3lm5_A          102 SEIILILEYAAGGEIFSLCLPELAEMVSENDVIRLIKQILEGVYYLHQNNIVHLDLKPQNILLSSIYPLGDIKIVDFGMS  181 (327)
T ss_dssp             SEEEEEEECCTTEEGGGGGSSCC-CCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEESCBTTBCCEEECCGGGC
T ss_pred             CeEEEEEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCeecCcCChHHEEEecCCCCCcEEEeeCccc
Confidence            999999999999999999876544569999999999999999999976        568999987   789999999999


Q ss_pred             eecCCC
Q 039406          225 KIASDV  230 (243)
Q Consensus       225 ~~~~~~  230 (243)
                      +.+...
T Consensus       182 ~~~~~~  187 (327)
T 3lm5_A          182 RKIGHA  187 (327)
T ss_dssp             EEC---
T ss_pred             cccCCc
Confidence            987543

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...

Probab=99.90  E-value=1.4e-23  Score=174.32  Aligned_cols=130  Identities=21%  Similarity=0.327  Sum_probs=114.6

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch---------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEe
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE---------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYE  163 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~---------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e  163 (243)
                      ++|.+.+.||+|+||.||+|+...+.+               ..+.+.+|+.+|++++|+||+++++++...+..|+|||
T Consensus         3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   82 (299)
T 2r3i_A            3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFE   82 (299)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC--------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             chhhhhhhhccCCCeeEEEEEEcCCCceEEEEEeecCccchhhHHHHHHHHHHHHHcCCCCeeeEEEEEecCCceEEEEE
Confidence            689999999999999999998764321               23668899999999999999999999999999999999


Q ss_pred             ccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          164 FVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       164 ~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      |+. ++|.+++.......+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++.+..
T Consensus        83 ~~~-~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~  155 (299)
T 2r3i_A           83 FLH-QDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGV  155 (299)
T ss_dssp             CCS-EEHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECSTTHHHHHCC
T ss_pred             ccc-CCHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHHCCccCCCCCHHHeEEcCCCCEEECcchhhhhccC
Confidence            997 599999876654468999999999999999999987        46899999999999999999987654

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=99.90  E-value=1.5e-23  Score=178.00  Aligned_cols=141  Identities=19%  Similarity=0.200  Sum_probs=112.5

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCc--------------hhHHHHHHHHHHHHhcCC--CccceEEEEEEeCCeeEEE
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGK--------------EGEREFQAEVEIISRVHH--KHLVSLVGYYTAGSQRMLV  161 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~--------------~~~~~~~~E~~~l~~l~h--p~iv~~~~~~~~~~~~~lv  161 (243)
                      .+.|.+.+.||+|+||.||++....+.              ...+.+.+|+.+|++++|  +||+++++++.+.+.+|||
T Consensus         8 ~~~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv   87 (343)
T 3dbq_A            8 GRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMV   87 (343)
T ss_dssp             SCEEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred             cCEEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEEEE
Confidence            367999999999999999999765432              234678999999999976  9999999999999999999


Q ss_pred             EeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCce
Q 039406          162 YEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNTH  233 (243)
Q Consensus       162 ~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~~  233 (243)
                      ||+ .+++|.+++....  .+++..++.++.|++.||.|||.        +++|||++ ++.+||+|||+++.+......
T Consensus        88 ~e~-~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~al~~lH~~~iiHrDikp~NIll~-~~~~kl~DFG~a~~~~~~~~~  163 (343)
T 3dbq_A           88 MEC-GNIDLNSWLKKKK--SIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTTS  163 (343)
T ss_dssp             ECC-CSEEHHHHHHHSC--CCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEE-TTEEEECCCSSSCCC------
T ss_pred             EeC-CCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCcceEEEE-CCcEEEeecccccccCccccc
Confidence            995 5789999997654  48999999999999999999976        56899997 688999999999987544322


Q ss_pred             -eeecccccc
Q 039406          234 -VSTRVMGTF  242 (243)
Q Consensus       234 -~~~~~~GT~  242 (243)
                       .....+||+
T Consensus       164 ~~~~~~~gt~  173 (343)
T 3dbq_A          164 VVKDSQVGTV  173 (343)
T ss_dssp             ------CCCC
T ss_pred             ccCCCCcCCc
Confidence             222346665

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=99.90  E-value=3.5e-25  Score=187.38  Aligned_cols=129  Identities=17%  Similarity=0.227  Sum_probs=105.3

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCc-------------------hhHHHHHHHHHHHHhcC---------CCccceEE
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGK-------------------EGEREFQAEVEIISRVH---------HKHLVSLV  149 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~-------------------~~~~~~~~E~~~l~~l~---------hp~iv~~~  149 (243)
                      .++|.+.+.||+|+||.||+|++....                   ...+.+.+|+.+|+.++         |+|||+++
T Consensus        19 ~~~y~~~~~lG~G~~g~V~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l~   98 (336)
T 2vuw_A           19 TEKLQRCEKIGEGVFGEVFQTIADHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGLN   98 (336)
T ss_dssp             HHHHHTCEEEEEETTEEEEEEEETTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCEE
T ss_pred             cccchheeeecccCceEEEEEEeCCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhhc
Confidence            367888999999999999999763311                   12378899999999886         77777777


Q ss_pred             EEEE------------------------------eCCeeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhh
Q 039406          150 GYYT------------------------------AGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLA  199 (243)
Q Consensus       150 ~~~~------------------------------~~~~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~  199 (243)
                      +++.                              ..+.+|||||||++|++.+.+.+   ..+++..++.++.||+.||.
T Consensus        99 ~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~---~~~~~~~~~~i~~qi~~aL~  175 (336)
T 2vuw_A           99 SVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRT---KLSSLATAKSILHQLTASLA  175 (336)
T ss_dssp             EEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTT---TCCCHHHHHHHHHHHHHHHH
T ss_pred             ceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHh---cCCCHHHHHHHHHHHHHHHH
Confidence            6643                              26789999999999977666643   24899999999999999999


Q ss_pred             Hhh-c--------CCCcEEECCCC--------------------cEEEeccCCceecCC
Q 039406          200 YLH-D--------DLANILLDFKF--------------------EAKVADFGLAKIASD  229 (243)
Q Consensus       200 ~lH-~--------~~~NiLl~~~~--------------------~~kl~DFG~a~~~~~  229 (243)
                      ||| .        ||+||||+.++                    .+||+|||+|+....
T Consensus       176 ~lH~~~~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~  234 (336)
T 2vuw_A          176 VAEASLRFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERD  234 (336)
T ss_dssp             HHHHHHCCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEET
T ss_pred             HHHHhCCEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCC
Confidence            999 5        67999999887                    999999999998754

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=99.90  E-value=2.6e-23  Score=177.41  Aligned_cols=139  Identities=20%  Similarity=0.271  Sum_probs=113.6

Q ss_pred             ccHHHHHHHhCCCCccceeeecCceEEEEEEecCCch-----------------------hHHHHHHHHHHHHhcCCCcc
Q 039406           89 FTYEELARATDGFSDANLLRQDGFGYVHRGVLPNGKE-----------------------GEREFQAEVEIISRVHHKHL  145 (243)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~-----------------------~~~~~~~E~~~l~~l~hp~i  145 (243)
                      ..+.++....++|.+.+.||+|+||.||+|....+..                       ..+.+.+|+.+|++++|+||
T Consensus        12 ~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i   91 (362)
T 3pg1_A           12 DLIAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNI   91 (362)
T ss_dssp             HHHHHHHHTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTB
T ss_pred             HHHHHHHHhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCc
Confidence            3456778888999999999999999999997654321                       13788999999999999999


Q ss_pred             ceEEEEEEe-----CCeeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECC
Q 039406          146 VSLVGYYTA-----GSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDF  212 (243)
Q Consensus       146 v~~~~~~~~-----~~~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~  212 (243)
                      +++++++..     ...+|+||||+. |+|.+++..... .+++..++.++.|++.||.|||.        +++|||++.
T Consensus        92 v~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~-~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~NIl~~~  169 (362)
T 3pg1_A           92 LGLRDIFVHFEEPAMHKLYLVTELMR-TDLAQVIHDQRI-VISPQHIQYFMYHILLGLHVLHEAGVVHRDLHPGNILLAD  169 (362)
T ss_dssp             CCCSEEEEECCTTTCCEEEEEEECCS-EEHHHHHHCTTS-CCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECT
T ss_pred             cceeeeEEeccCCCcceEEEEEccCC-CCHHHHHHhccc-CCCHHHHHHHHHHHHHHHHHHHHCcCEecCCChHHEEEcC
Confidence            999999854     336899999997 588888875433 58999999999999999999986        468999999


Q ss_pred             CCcEEEeccCCceecCC
Q 039406          213 KFEAKVADFGLAKIASD  229 (243)
Q Consensus       213 ~~~~kl~DFG~a~~~~~  229 (243)
                      ++.+||+|||+++....
T Consensus       170 ~~~~kl~Dfg~~~~~~~  186 (362)
T 3pg1_A          170 NNDITICDFNLAREDTA  186 (362)
T ss_dssp             TCCEEECCTTC------
T ss_pred             CCCEEEEecCccccccc
Confidence            99999999999986543

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=99.90  E-value=8.7e-24  Score=176.73  Aligned_cols=141  Identities=26%  Similarity=0.311  Sum_probs=117.4

Q ss_pred             cHHHHHHHhCCCCccceeeecCceEEEEEEecC-----C--------------chhHHHHHHHHHHHHhc-CCCccceEE
Q 039406           90 TYEELARATDGFSDANLLRQDGFGYVHRGVLPN-----G--------------KEGEREFQAEVEIISRV-HHKHLVSLV  149 (243)
Q Consensus        90 ~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~-----~--------------~~~~~~~~~E~~~l~~l-~hp~iv~~~  149 (243)
                      ...++....++|.+.+.||+|+||.||+|++..     +              ....+.+.+|+.+|+++ +|+||++++
T Consensus        18 ~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~   97 (316)
T 2xir_A           18 DASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLL   97 (316)
T ss_dssp             CHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             cccceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeeeEE
Confidence            344555556889999999999999999997432     1              11346788999999999 799999999


Q ss_pred             EEEEeCC-eeEEEEeccCCCCHHHHhccCCC--------------CCCCHHHHHHHHHHHHHhhhHhhc--------CCC
Q 039406          150 GYYTAGS-QRMLVYEFVLNNTLVFHLHGKGQ--------------PTMDWPTRIKIALGSAKGLAYLHD--------DLA  206 (243)
Q Consensus       150 ~~~~~~~-~~~lv~e~~~~g~L~~~l~~~~~--------------~~l~~~~~~~i~~~i~~~l~~lH~--------~~~  206 (243)
                      +++...+ .+|+|||||++++|.+++.....              ..+++..++.++.|++.||.|||.        +++
T Consensus        98 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dikp~  177 (316)
T 2xir_A           98 GACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAAR  177 (316)
T ss_dssp             EEECCTTSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGG
T ss_pred             EEEecCCCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHhCCcccccCccc
Confidence            9988755 59999999999999999976542              127899999999999999999987        458


Q ss_pred             cEEECCCCcEEEeccCCceecCCC
Q 039406          207 NILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       207 NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      |||++.++.+||+|||+++.+...
T Consensus       178 Nil~~~~~~~kl~Dfg~~~~~~~~  201 (316)
T 2xir_A          178 NILLSEKNVVKICDFGLARDIYKD  201 (316)
T ss_dssp             GEEECGGGCEEECCCGGGSCTTTC
T ss_pred             eEEECCCCCEEECCCccccccccC
Confidence            999999999999999999877544

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=99.90  E-value=9.7e-24  Score=180.96  Aligned_cols=128  Identities=20%  Similarity=0.303  Sum_probs=105.7

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCc---------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCC------
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGK---------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGS------  156 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~---------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~------  156 (243)
                      .++|...+.||+|+||.||+|.+..+.               ...+.+.+|+.+|+.++|+||+++++++...+      
T Consensus        24 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~  103 (367)
T 1cm8_A           24 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFT  103 (367)
T ss_dssp             BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCC
T ss_pred             cceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccCc
Confidence            378999999999999999999865432               13567889999999999999999999998653      


Q ss_pred             eeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          157 QRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       157 ~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      .+|+||||+ +++|.+++...   .+++..+..++.|++.||.|||.        +++|||++.++.+||+|||+++...
T Consensus       104 ~~~lv~e~~-~~~L~~~~~~~---~l~~~~~~~~~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~  179 (367)
T 1cm8_A          104 DFYLVMPFM-GTDLGKLMKHE---KLGEDRIQFLVYQMLKGLRYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLARQAD  179 (367)
T ss_dssp             CCEEEEECC-SEEHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECC
T ss_pred             eEEEEEecC-CCCHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHCCccccCcCHHHEEEcCCCCEEEEeeecccccc
Confidence            469999999 78999998753   48999999999999999999976        5689999999999999999999875


Q ss_pred             C
Q 039406          229 D  229 (243)
Q Consensus       229 ~  229 (243)
                      .
T Consensus       180 ~  180 (367)
T 1cm8_A          180 S  180 (367)
T ss_dssp             S
T ss_pred             c
Confidence            4

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=99.90  E-value=1.4e-23  Score=176.46  Aligned_cols=131  Identities=21%  Similarity=0.314  Sum_probs=110.5

Q ss_pred             HhCCCCccceeeecCceEEEEEEecCCch---------------------hHHHHHHHHHHHHhcCCCccceEEEEEEeC
Q 039406           97 ATDGFSDANLLRQDGFGYVHRGVLPNGKE---------------------GEREFQAEVEIISRVHHKHLVSLVGYYTAG  155 (243)
Q Consensus        97 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~---------------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~  155 (243)
                      ..++|.+.+.||+|+||.||+|+...+.+                     ....+.+|+.+|++++|+||+++++++...
T Consensus         8 l~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~   87 (322)
T 2ycf_A            8 LRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAE   87 (322)
T ss_dssp             HHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEESS
T ss_pred             hhhceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcCC
Confidence            34679999999999999999998765421                     123478999999999999999999998765


Q ss_pred             CeeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCc---EEEeccCCc
Q 039406          156 SQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFE---AKVADFGLA  224 (243)
Q Consensus       156 ~~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~---~kl~DFG~a  224 (243)
                      + .|+||||+++++|.+++....  .+++..++.++.|++.||.|||.        +++|||++.++.   +||+|||++
T Consensus        88 ~-~~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~  164 (322)
T 2ycf_A           88 D-YYIVLELMEGGELFDKVVGNK--RLKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHS  164 (322)
T ss_dssp             S-EEEEEECCTTEETHHHHSTTC--CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESSSSSSCCEEECCCTTC
T ss_pred             c-eEEEEecCCCCcHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEEecCCCCCeEEEccCccc
Confidence            5 899999999999999986544  58999999999999999999986        468999987654   999999999


Q ss_pred             eecCCC
Q 039406          225 KIASDV  230 (243)
Q Consensus       225 ~~~~~~  230 (243)
                      +.+...
T Consensus       165 ~~~~~~  170 (322)
T 2ycf_A          165 KILGET  170 (322)
T ss_dssp             EECCCC
T ss_pred             eecccc
Confidence            987543

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=99.90  E-value=3.9e-23  Score=171.27  Aligned_cols=131  Identities=23%  Similarity=0.313  Sum_probs=112.6

Q ss_pred             hCCCCccc-eeeecCceEEEEEEecCC-----------------chhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeE
Q 039406           98 TDGFSDAN-LLRQDGFGYVHRGVLPNG-----------------KEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRM  159 (243)
Q Consensus        98 ~~~~~~~~-~lg~G~~g~V~~~~~~~~-----------------~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~  159 (243)
                      .++|.+.+ .||+|+||.||+|.+...                 ....+.+.+|+.+|+.++|+||+++++++ ..+..|
T Consensus        15 ~~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-~~~~~~   93 (291)
T 1xbb_A           15 RKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGIC-EAESWM   93 (291)
T ss_dssp             GGGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEE-ESSSEE
T ss_pred             chhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEE-CCCCcE
Confidence            35677777 999999999999954321                 11357789999999999999999999998 567889


Q ss_pred             EEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCC
Q 039406          160 LVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVN  231 (243)
Q Consensus       160 lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~  231 (243)
                      +||||+++++|.+++....  .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++.+....
T Consensus        94 lv~e~~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~  171 (291)
T 1xbb_A           94 LVMEMAELGPLNKYLQQNR--HVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADE  171 (291)
T ss_dssp             EEEECCTTEEHHHHHHHCT--TCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCCTTCEECCTTC
T ss_pred             EEEEeCCCCCHHHHHHhCc--CCCHHHHHHHHHHHHHHHHHHHhCCeEcCCCCcceEEEeCCCcEEEccCCcceeeccCC
Confidence            9999999999999997654  48999999999999999999987        4689999999999999999999876544

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=99.90  E-value=2.5e-23  Score=170.05  Aligned_cols=130  Identities=18%  Similarity=0.293  Sum_probs=114.3

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc-------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeC--CeeEEEEe
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK-------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAG--SQRMLVYE  163 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~-------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~--~~~~lv~e  163 (243)
                      ++|.+.+.||+|+||.||+|++....             ...+.+.+|+.+|++++|+||+++++++.+.  +..++|||
T Consensus        10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e   89 (271)
T 3kmu_A           10 KQLNFLTKLNENHSGELWKGRWQGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLITH   89 (271)
T ss_dssp             GGCEEEEEEEEETTEEEEEEEETTEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEEEEE
T ss_pred             HHhHHHHHhcCCCcceEEEEEECCeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEeeec
Confidence            67999999999999999999865322             2456789999999999999999999999877  78999999


Q ss_pred             ccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc----------CCCcEEECCCCcEEEeccCCceecC
Q 039406          164 FVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD----------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       164 ~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~----------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      |+++|+|.+++.......+++..++.++.|++.||.|||.          +++|||++.++.+||+|||++....
T Consensus        90 ~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~~i~H~dikp~Nil~~~~~~~~l~~~~~~~~~~  164 (271)
T 3kmu_A           90 WMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHTLEPLIPRHALNSRSVMIDEDMTARISMADVKFSFQ  164 (271)
T ss_dssp             CCTTCBHHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHHTTSSSCCTTCCCSGGGEEECTTSCEEEEGGGSCCTTS
T ss_pred             ccCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcCCCceecCCCccceEEEcCCcceeEEeccceeeec
Confidence            9999999999987665568999999999999999999986          3489999999999999999876543

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=99.90  E-value=2e-23  Score=174.01  Aligned_cols=130  Identities=18%  Similarity=0.317  Sum_probs=112.6

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCch-------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEec
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGKE-------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEF  164 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~-------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  164 (243)
                      .++|.+.+.||+|+||.||+++...+.+             ..+.+.+|+.+|++++|+||+++++++.+.+..|+||||
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   87 (304)
T 2jam_A            8 RKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLVMQL   87 (304)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECC
T ss_pred             hccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHhCCCCCeeehhhhcccCCEEEEEEEc
Confidence            4679999999999999999998764321             345688999999999999999999999999999999999


Q ss_pred             cCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEE---CCCCcEEEeccCCceecCC
Q 039406          165 VLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILL---DFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       165 ~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl---~~~~~~kl~DFG~a~~~~~  229 (243)
                      +++++|.+++...+  .+++..++.++.|++.||.|||.        +++|||+   +.++.+||+|||+++....
T Consensus        88 ~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~~~~  161 (304)
T 2jam_A           88 VSGGELFDRILERG--VYTEKDASLVIQQVLSAVKYLHENGIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQN  161 (304)
T ss_dssp             CCSCBHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHHHTTCCCCSCCGGGCEESSSSTTCCEEBCSCSTTCCCCC
T ss_pred             CCCccHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEecCCCCCCEEEccCCcceecCC
Confidence            99999999886544  48999999999999999999987        4589999   7789999999999987543

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=99.90  E-value=1.5e-23  Score=192.16  Aligned_cols=132  Identities=23%  Similarity=0.356  Sum_probs=113.2

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCc-----------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEE
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGK-----------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRML  160 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~-----------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~l  160 (243)
                      .++|.+.+.||+|+||.||+|.+....                 ...+.+.+|+.+|++++||||+++++++. ++..|+
T Consensus       389 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~~~~~l  467 (656)
T 2j0j_A          389 RERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPVWI  467 (656)
T ss_dssp             GGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEE
T ss_pred             cccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe-cCceEE
Confidence            467889999999999999999865321                 13477899999999999999999999985 567899


Q ss_pred             EEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCC
Q 039406          161 VYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVN  231 (243)
Q Consensus       161 v~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~  231 (243)
                      |||||.+|+|.+++..... .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++.+....
T Consensus       468 v~E~~~~g~L~~~l~~~~~-~l~~~~~~~i~~qi~~aL~~LH~~givHrDikp~NILl~~~~~vkL~DFG~a~~~~~~~  545 (656)
T 2j0j_A          468 IMELCTLGELRSFLQVRKF-SLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDST  545 (656)
T ss_dssp             EEECCTTCBHHHHHHHTTT-TCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECCCCCCCSCCC--
T ss_pred             EEEcCCCCcHHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHHhCCccccccchHhEEEeCCCCEEEEecCCCeecCCCc
Confidence            9999999999999976543 48999999999999999999976        4689999999999999999999875543

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=99.89  E-value=5.3e-23  Score=173.18  Aligned_cols=127  Identities=17%  Similarity=0.272  Sum_probs=111.8

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch----------hHHHHHHHHHHHHhcC-CCccceEEEEEEe--CCeeEEEEecc
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE----------GEREFQAEVEIISRVH-HKHLVSLVGYYTA--GSQRMLVYEFV  165 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~----------~~~~~~~E~~~l~~l~-hp~iv~~~~~~~~--~~~~~lv~e~~  165 (243)
                      ++|.+.+.||+|+||.||+|+...+.+          ..+.+.+|+.+|++++ |+||+++++++.+  ....++||||+
T Consensus        36 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~lv~e~~  115 (330)
T 3nsz_A           36 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHV  115 (330)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCCHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEEEEEECC
T ss_pred             CceEEEEEecccCCeEEEEEEECCCCcEEEEEEecccchHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCceEEEEecc
Confidence            679999999999999999998755432          4678899999999997 9999999999987  66799999999


Q ss_pred             CCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCC-cEEEeccCCceecCCC
Q 039406          166 LNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKF-EAKVADFGLAKIASDV  230 (243)
Q Consensus       166 ~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~-~~kl~DFG~a~~~~~~  230 (243)
                      .+++|.+++..     +++..++.++.|++.||.|||.        +++|||++.++ .+||+|||+|+.+...
T Consensus       116 ~~~~l~~~~~~-----~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~  184 (330)
T 3nsz_A          116 NNTDFKQLYQT-----LTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPG  184 (330)
T ss_dssp             CCCCHHHHGGG-----CCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTTEEEECCCTTCEECCTT
T ss_pred             CchhHHHHHHh-----CCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEEcCCCCEEEEEeCCCceEcCCC
Confidence            99999998853     8889999999999999999976        56899999776 8999999999987544

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.89  E-value=5.4e-23  Score=170.09  Aligned_cols=131  Identities=27%  Similarity=0.380  Sum_probs=111.3

Q ss_pred             CCCCccc-eeeecCceEEEEEEecCC----------------chhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEE
Q 039406           99 DGFSDAN-LLRQDGFGYVHRGVLPNG----------------KEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLV  161 (243)
Q Consensus        99 ~~~~~~~-~lg~G~~g~V~~~~~~~~----------------~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv  161 (243)
                      ++|.+.+ .||+|+||.||+|.+...                ....+.+.+|+.+|++++|+||+++++++ ..+..++|
T Consensus         9 ~~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~-~~~~~~lv   87 (287)
T 1u59_A            9 DNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVC-QAEALMLV   87 (287)
T ss_dssp             GGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-ESSSEEEE
T ss_pred             HHhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEe-cCCCcEEE
Confidence            5566666 999999999999975321                12467789999999999999999999999 55679999


Q ss_pred             EeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCC
Q 039406          162 YEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVN  231 (243)
Q Consensus       162 ~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~  231 (243)
                      |||+++++|.+++..... .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++.+....
T Consensus        88 ~e~~~~~~L~~~l~~~~~-~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~  164 (287)
T 1u59_A           88 MEMAGGGPLHKFLVGKRE-EIPVSNVAELLHQVSMGMKYLEEKNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADD  164 (287)
T ss_dssp             EECCTTEEHHHHHTTCTT-TSCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEEETTEEEECCCTTCEECTTCS
T ss_pred             EEeCCCCCHHHHHHhCCc-cCCHHHHHHHHHHHHHHHHHHHHCCEeeCCCchheEEEcCCCCEEECcccceeeeccCc
Confidence            999999999999975433 58999999999999999999986        4689999999999999999999875443

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=99.89  E-value=3e-23  Score=179.31  Aligned_cols=140  Identities=19%  Similarity=0.199  Sum_probs=112.8

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc--------------hhHHHHHHHHHHHHhcC--CCccceEEEEEEeCCeeEEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK--------------EGEREFQAEVEIISRVH--HKHLVSLVGYYTAGSQRMLVY  162 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~--------------~~~~~~~~E~~~l~~l~--hp~iv~~~~~~~~~~~~~lv~  162 (243)
                      ++|.+.+.||+|+||.||++....+.              ...+.+.+|+.+|++++  |+||+++++++...+.+||||
T Consensus        56 ~~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~  135 (390)
T 2zmd_A           56 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVM  135 (390)
T ss_dssp             EEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred             CceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEEEE
Confidence            45999999999999999999765432              24577899999999996  599999999999999999999


Q ss_pred             eccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCce-
Q 039406          163 EFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNTH-  233 (243)
Q Consensus       163 e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~~-  233 (243)
                      | +.+++|.+++....  .+++..++.++.||+.||.|||.        ||+|||++ ++.+||+|||+++.+...... 
T Consensus       136 E-~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~aL~~lH~~~ivHrDlkp~NIll~-~~~~kl~DFG~a~~~~~~~~~~  211 (390)
T 2zmd_A          136 E-CGNIDLNSWLKKKK--SIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTTSV  211 (390)
T ss_dssp             E-CCSEEHHHHHHHCS--SCCHHHHHHHHHHHHHHHHHHHTTTCCCCCCCGGGEEES-SSCEEECCCSSSCCC-------
T ss_pred             e-cCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHEEEE-CCeEEEEecCccccccCCCccc
Confidence            9 55789999997654  58899999999999999999987        56899995 589999999999987544322 


Q ss_pred             eeecccccc
Q 039406          234 VSTRVMGTF  242 (243)
Q Consensus       234 ~~~~~~GT~  242 (243)
                      .....+||+
T Consensus       212 ~~~~~~gt~  220 (390)
T 2zmd_A          212 VKDSQVGAV  220 (390)
T ss_dssp             --CCSCCCG
T ss_pred             cCCCCCcCC
Confidence            223456665

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=99.89  E-value=6e-23  Score=170.27  Aligned_cols=131  Identities=16%  Similarity=0.187  Sum_probs=114.0

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCch-----------hHHHHHHHHHHHHhc-CCCccceEEEEEEeCCeeEEEEecc
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGKE-----------GEREFQAEVEIISRV-HHKHLVSLVGYYTAGSQRMLVYEFV  165 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~-----------~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~~~lv~e~~  165 (243)
                      .++|.+.+.||+|+||.||+|....+.+           ..+.+.+|+.+++.+ +|+||+++++++......|+||||+
T Consensus         9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~e~~   88 (298)
T 1csn_A            9 GVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSDAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVIDLL   88 (298)
T ss_dssp             TTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCTTSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEECC
T ss_pred             ccceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCCccHHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEEEEEec
Confidence            3679999999999999999998644321           345678999999999 7999999999999999999999999


Q ss_pred             CCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCc-----EEEeccCCceecCCC
Q 039406          166 LNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFE-----AKVADFGLAKIASDV  230 (243)
Q Consensus       166 ~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~-----~kl~DFG~a~~~~~~  230 (243)
                       +++|.+++...+. .+++..++.++.|++.||.|||.        +++|||++.++.     +||+|||+++.+...
T Consensus        89 -~~~L~~~l~~~~~-~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~~~~~~  164 (298)
T 1csn_A           89 -GPSLEDLLDLCGR-KFSVKTVAMAAKQMLARVQSIHEKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDP  164 (298)
T ss_dssp             -CCBHHHHHHHTTT-CCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCT
T ss_pred             -CCCHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEeccCCCCCCCeEEEEECccccccccc
Confidence             9999999976543 48999999999999999999987        568999987765     999999999987654

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=99.89  E-value=1.3e-23  Score=180.88  Aligned_cols=136  Identities=19%  Similarity=0.270  Sum_probs=107.7

Q ss_pred             HHHhCCCCccceeeecCceEEEEEEecCCch---------hHHHHHHHHHHHHhcCCCccceEEEEEEe-----------
Q 039406           95 ARATDGFSDANLLRQDGFGYVHRGVLPNGKE---------GEREFQAEVEIISRVHHKHLVSLVGYYTA-----------  154 (243)
Q Consensus        95 ~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~---------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-----------  154 (243)
                      ....++|.+.+.||+|+||.||+|++..+.+         ......+|+.+|+.++|+||++++++|..           
T Consensus         3 ~~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~~~~~~   82 (383)
T 3eb0_A            3 ETSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPRYKNRELDIMKVLDHVNIIKLVDYFYTTGDEEPKPPQP   82 (383)
T ss_dssp             ---CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCTTSCCHHHHHHTTCCCTTBCCEEEEEEEC----------
T ss_pred             ccccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCcchHHHHHHHHHHcCCCCccchhheeeecCccccccccc
Confidence            3456789999999999999999998765432         12334579999999999999999999854           


Q ss_pred             ---------------------------CCeeEEEEeccCCCCHHHHhcc--CCCCCCCHHHHHHHHHHHHHhhhHhhc--
Q 039406          155 ---------------------------GSQRMLVYEFVLNNTLVFHLHG--KGQPTMDWPTRIKIALGSAKGLAYLHD--  203 (243)
Q Consensus       155 ---------------------------~~~~~lv~e~~~~g~L~~~l~~--~~~~~l~~~~~~~i~~~i~~~l~~lH~--  203 (243)
                                                 ...+++|||||.+ +|.+.+..  .....+++..++.++.|++.||.|||.  
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~-~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~g  161 (383)
T 3eb0_A           83 PDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVPD-TLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFIHSLG  161 (383)
T ss_dssp             ---------------------------CCEEEEEECCCSE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             ccccccccccccccccccccccccCCCceEEEEEEecCCc-cHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCc
Confidence                                       3348999999975 77776643  122358999999999999999999987  


Q ss_pred             ------CCCcEEEC-CCCcEEEeccCCceecCCCC
Q 039406          204 ------DLANILLD-FKFEAKVADFGLAKIASDVN  231 (243)
Q Consensus       204 ------~~~NiLl~-~~~~~kl~DFG~a~~~~~~~  231 (243)
                            +++|||++ .++.+||+|||+|+.+....
T Consensus       162 i~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~  196 (383)
T 3eb0_A          162 ICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSE  196 (383)
T ss_dssp             EECSCCCGGGEEEETTTTEEEECCCTTCEECCTTS
T ss_pred             CccCccCHHHEEEcCCCCcEEEEECCCCcccCCCC
Confidence                  56899997 68999999999999875443

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=99.89  E-value=3.7e-23  Score=176.94  Aligned_cols=129  Identities=19%  Similarity=0.315  Sum_probs=111.7

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCc--------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeC-----Cee
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGK--------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAG-----SQR  158 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~--------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~-----~~~  158 (243)
                      .++|.+.+.||+|+||.||+|+...+.              ...+.+.+|+++|++++|+||+++++++...     ...
T Consensus        26 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~  105 (364)
T 3qyz_A           26 GPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDV  105 (364)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCE
T ss_pred             cccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccceE
Confidence            368999999999999999999765432              2347788999999999999999999998765     368


Q ss_pred             EEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          159 MLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       159 ~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      |+||||+. ++|.+++...   .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++.....
T Consensus       106 ~iv~e~~~-~~L~~~l~~~---~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~  181 (364)
T 3qyz_A          106 YIVQDLME-TDLYKLLKTQ---HLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPD  181 (364)
T ss_dssp             EEEEECCS-EEHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECCGG
T ss_pred             EEEEcccC-cCHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHHCCeecCCCChHhEEECCCCCEEEEeCcceEecCCC
Confidence            99999997 4999988654   38999999999999999999976        568999999999999999999987543

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=99.89  E-value=5.5e-23  Score=171.17  Aligned_cols=133  Identities=21%  Similarity=0.266  Sum_probs=113.8

Q ss_pred             hCCCCcc-ceeeecCceEEEEEEecCCch--------hHHHHHHHHHHH-HhcCCCccceEEEEEEe----CCeeEEEEe
Q 039406           98 TDGFSDA-NLLRQDGFGYVHRGVLPNGKE--------GEREFQAEVEII-SRVHHKHLVSLVGYYTA----GSQRMLVYE  163 (243)
Q Consensus        98 ~~~~~~~-~~lg~G~~g~V~~~~~~~~~~--------~~~~~~~E~~~l-~~l~hp~iv~~~~~~~~----~~~~~lv~e  163 (243)
                      .++|.+. +.||+|+||.||++....+.+        ....+.+|+.++ +.++|+||+++++++..    .+.+|+|||
T Consensus        16 ~~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~e   95 (299)
T 3m2w_A           16 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDCPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVME   95 (299)
T ss_dssp             GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECSHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEEC
T ss_pred             ccchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEecccHHHHHHHHHHHHhccCCCchhHHhhhhhhcCCCceEEEEEe
Confidence            3677776 789999999999998765532        345678899988 55699999999999987    678999999


Q ss_pred             ccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECC---CCcEEEeccCCceecCCC
Q 039406          164 FVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDF---KFEAKVADFGLAKIASDV  230 (243)
Q Consensus       164 ~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~---~~~~kl~DFG~a~~~~~~  230 (243)
                      ||++++|.+++.......+++..++.++.|++.||.|||.        +++|||++.   ++.+||+|||+++.....
T Consensus        96 ~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~  173 (299)
T 3m2w_A           96 CLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTGE  173 (299)
T ss_dssp             CCCSCBHHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESSSSTTCCEEECCCTTCEECTTC
T ss_pred             ecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEecCCCCCcEEEeccccccccccc
Confidence            9999999999987665569999999999999999999986        568999998   789999999999887543

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=99.89  E-value=3.3e-23  Score=174.52  Aligned_cols=132  Identities=26%  Similarity=0.352  Sum_probs=113.5

Q ss_pred             CCCCccceeeecCceEEEEEEec----CC-------------chhHHHHHHHHHHHHhcCCCccceEEEEEE--eCCeeE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLP----NG-------------KEGEREFQAEVEIISRVHHKHLVSLVGYYT--AGSQRM  159 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~----~~-------------~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~--~~~~~~  159 (243)
                      ++|.+.+.||+|+||.||+|++.    ..             ....+.+.+|+++|++++|+||+++++++.  +.+.+|
T Consensus        23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~  102 (327)
T 3lxl_A           23 RHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSLR  102 (327)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSSCEEE
T ss_pred             hhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhcCCCceeEEEEEEecCCCceEE
Confidence            67899999999999999999842    11             124567899999999999999999999887  456799


Q ss_pred             EEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCC
Q 039406          160 LVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVN  231 (243)
Q Consensus       160 lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~  231 (243)
                      +||||+++++|.+++..... .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++.+....
T Consensus       103 lv~e~~~~~~L~~~l~~~~~-~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~~  181 (327)
T 3lxl_A          103 LVMEYLPSGCLRDFLQRHRA-RLDASRLLLYSSQICKGMEYLGSRRCVHRDLAARNILVESEAHVKIADFGLAKLLPLDK  181 (327)
T ss_dssp             EEEECCTTCBHHHHHHHHGG-GCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCGGGCEECCTTC
T ss_pred             EEEeecCCCCHHHHHHhccc-CCCHHHHHHHHHHHHHHHHHHHhCCccCCCCChhhEEECCCCCEEEcccccceecccCC
Confidence            99999999999999975433 48999999999999999999986        4689999999999999999999876543

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=99.89  E-value=3.8e-23  Score=175.79  Aligned_cols=128  Identities=23%  Similarity=0.285  Sum_probs=110.0

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch---------------hHHHHHHHHHHHHhcCCCccceEEEEEEe--------C
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE---------------GEREFQAEVEIISRVHHKHLVSLVGYYTA--------G  155 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~---------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~--------~  155 (243)
                      ++|.+.+.||+|+||.||+|+...+.+               ....+.+|+.+|+.++|+||+++++++..        .
T Consensus        17 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~   96 (351)
T 3mi9_A           17 SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRCK   96 (351)
T ss_dssp             GGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC--------
T ss_pred             cceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeeccccccccCC
Confidence            789999999999999999998754321               34577899999999999999999999987        4


Q ss_pred             CeeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceec
Q 039406          156 SQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIA  227 (243)
Q Consensus       156 ~~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~  227 (243)
                      +.+|+|||||++ +|.+.+..... .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+|+.+
T Consensus        97 ~~~~lv~e~~~~-~l~~~l~~~~~-~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~  174 (351)
T 3mi9_A           97 GSIYLVFDFCEH-DLAGLLSNVLV-KFTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAF  174 (351)
T ss_dssp             CEEEEEEECCSE-EHHHHHHCTTS-CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEEC
T ss_pred             ceEEEEEeccCC-CHHHHHhhccC-CCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCHHHEEEcCCCCEEEccchhcccc
Confidence            568999999976 77777765433 48999999999999999999986        568999999999999999999987


Q ss_pred             C
Q 039406          228 S  228 (243)
Q Consensus       228 ~  228 (243)
                      .
T Consensus       175 ~  175 (351)
T 3mi9_A          175 S  175 (351)
T ss_dssp             C
T ss_pred             c
Confidence            5

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=99.89  E-value=1.5e-23  Score=178.12  Aligned_cols=128  Identities=20%  Similarity=0.249  Sum_probs=104.7

Q ss_pred             CCCCccceeeecCceEEEEEEecC---Cch------------------------hHHHHHHHHHHHHhcCCCccceEEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPN---GKE------------------------GEREFQAEVEIISRVHHKHLVSLVGY  151 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~---~~~------------------------~~~~~~~E~~~l~~l~hp~iv~~~~~  151 (243)
                      ++|.+.+.||+|+||.||+|.+..   ...                        ....+.+|+.+++.++|+||++++++
T Consensus        37 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~~  116 (345)
T 2v62_A           37 NQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYGS  116 (345)
T ss_dssp             CEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEEE
T ss_pred             ceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeecc
Confidence            679999999999999999998764   110                        12336678889999999999999999


Q ss_pred             EEe----CCeeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCC--cEE
Q 039406          152 YTA----GSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKF--EAK  217 (243)
Q Consensus       152 ~~~----~~~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~--~~k  217 (243)
                      +..    ....|+||||| +++|.+++...+  .+++..++.++.|++.||.|||.        +++|||++.++  .+|
T Consensus       117 ~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~--~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~~~k  193 (345)
T 2v62_A          117 GLTEFKGRSYRFMVMERL-GIDLQKISGQNG--TFKKSTVLQLGIRMLDVLEYIHENEYVHGDIKAANLLLGYKNPDQVY  193 (345)
T ss_dssp             EEEESSSCEEEEEEEECE-EEEHHHHCBGGG--BCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEESSSTTSEE
T ss_pred             cccccCCCcEEEEEEecc-CCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCCeeCCCcCHHHEEEccCCCCcEE
Confidence            988    77899999999 999999997654  58999999999999999999987        56899998877  999


Q ss_pred             EeccCCceecCC
Q 039406          218 VADFGLAKIASD  229 (243)
Q Consensus       218 l~DFG~a~~~~~  229 (243)
                      |+|||+|+.+..
T Consensus       194 L~Dfg~a~~~~~  205 (345)
T 2v62_A          194 LADYGLSYRYCP  205 (345)
T ss_dssp             ECCCTTCEESSG
T ss_pred             EEeCCCceeccc
Confidence            999999998754

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=99.89  E-value=2.3e-23  Score=173.25  Aligned_cols=128  Identities=20%  Similarity=0.324  Sum_probs=112.7

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCc-------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEec
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGK-------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEF  164 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~-------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  164 (243)
                      .++|.+.+.||+|+||.||+|....+.             ...+.+.+|+.+|++++|+||+++++++...+..|+||||
T Consensus        18 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   97 (302)
T 2j7t_A           18 NEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIMIEF   97 (302)
T ss_dssp             GGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEEEEEC
T ss_pred             ccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEEEEEe
Confidence            367999999999999999999876542             2457789999999999999999999999999999999999


Q ss_pred             cCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCcee
Q 039406          165 VLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKI  226 (243)
Q Consensus       165 ~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~  226 (243)
                      +++++|.+++..... .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||++..
T Consensus        98 ~~~~~l~~~~~~~~~-~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~  166 (302)
T 2j7t_A           98 CPGGAVDAIMLELDR-GLTEPQIQVVCRQMLEALNFLHSKRIIHRDLKAGNVLMTLEGDIRLADFGVSAK  166 (302)
T ss_dssp             CTTEEHHHHHHHHTS-CCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEECTTSCEEECCCHHHHH
T ss_pred             CCCCcHHHHHHhhcc-CCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCHHHEEECCCCCEEEEECCCCcc
Confidence            999999998865333 48999999999999999999987        45899999999999999999764

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=99.89  E-value=1.1e-23  Score=175.06  Aligned_cols=133  Identities=21%  Similarity=0.310  Sum_probs=102.4

Q ss_pred             HhCCCCccceeeecCceEEEEEEecCCc--------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEE
Q 039406           97 ATDGFSDANLLRQDGFGYVHRGVLPNGK--------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVY  162 (243)
Q Consensus        97 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~--------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  162 (243)
                      ..++|.+.+.||+|+||.||+|....+.              ...+.+.+|+.+|++++|+||+++++++...+..|+||
T Consensus        13 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   92 (303)
T 2vwi_A           13 NRDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELWLVM   92 (303)
T ss_dssp             CCCCCEEEEECC---CCCEEEEEC----CEEEEECCC----------------CCCCCCCTTBCCEEEEEESSSCEEEEE
T ss_pred             chhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEeecCCcEEEe
Confidence            3478999999999999999999764332              13456788999999999999999999999999999999


Q ss_pred             eccCCCCHHHHhcc------CCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          163 EFVLNNTLVFHLHG------KGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       163 e~~~~g~L~~~l~~------~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      ||+++++|.+++..      .....+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++.+.
T Consensus        93 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~  172 (303)
T 2vwi_A           93 KLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKNGQIHRDVKAGNILLGEDGSVQIADFGVSAFLA  172 (303)
T ss_dssp             ECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEECTTCCEEECCCHHHHHCC
T ss_pred             hhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCCChhhEEEcCCCCEEEEeccchheec
Confidence            99999999999863      122358999999999999999999986        4589999999999999999998764


Q ss_pred             C
Q 039406          229 D  229 (243)
Q Consensus       229 ~  229 (243)
                      .
T Consensus       173 ~  173 (303)
T 2vwi_A          173 T  173 (303)
T ss_dssp             -
T ss_pred             c
Confidence            3

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=99.89  E-value=7.5e-23  Score=175.55  Aligned_cols=127  Identities=19%  Similarity=0.263  Sum_probs=105.6

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCc---------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCC------
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGK---------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGS------  156 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~---------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~------  156 (243)
                      .++|.+.+.||+|+||.||+|....+.               ...+.+.+|+.+|+.++|+||+++++++...+      
T Consensus        24 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~  103 (371)
T 2xrw_A           24 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQ  103 (371)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCC
T ss_pred             hhheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeecccccccccc
Confidence            378999999999999999999765432               23567889999999999999999999998665      


Q ss_pred             eeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          157 QRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       157 ~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      .+|+|||||++ +|.+++..    .+++..+..++.|++.||.|||.        +++|||++.++.+||+|||+++...
T Consensus       104 ~~~lv~e~~~~-~l~~~~~~----~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~  178 (371)
T 2xrw_A          104 DVYIVMELMDA-NLCQVIQM----ELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAG  178 (371)
T ss_dssp             EEEEEEECCSE-EHHHHHHS----CCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECCCCC-----
T ss_pred             ceEEEEEcCCC-CHHHHHhh----ccCHHHHHHHHHHHHHHHHHHHHCCeecccCCHHHEEEcCCCCEEEEEeecccccc
Confidence            78999999975 78888753    38899999999999999999976        5689999999999999999998765


Q ss_pred             C
Q 039406          229 D  229 (243)
Q Consensus       229 ~  229 (243)
                      .
T Consensus       179 ~  179 (371)
T 2xrw_A          179 T  179 (371)
T ss_dssp             -
T ss_pred             c
Confidence            4

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=99.89  E-value=8.1e-23  Score=170.94  Aligned_cols=133  Identities=25%  Similarity=0.339  Sum_probs=107.2

Q ss_pred             HhCCCCccceeeecCceEEEEEEecCC------------------chhHHHHHHHHHHHHhcCCCccceEEEEEEeCC--
Q 039406           97 ATDGFSDANLLRQDGFGYVHRGVLPNG------------------KEGEREFQAEVEIISRVHHKHLVSLVGYYTAGS--  156 (243)
Q Consensus        97 ~~~~~~~~~~lg~G~~g~V~~~~~~~~------------------~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~--  156 (243)
                      ..++|.+.+.||+|+||.||+|.+...                  ....+.+.+|+.+|++++|+||+++++++...+  
T Consensus        32 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~  111 (313)
T 3brb_A           32 DRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIEMSSQ  111 (313)
T ss_dssp             CGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC----
T ss_pred             CHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEeecccc
Confidence            346788899999999999999976542                  123467889999999999999999999998655  


Q ss_pred             ---eeEEEEeccCCCCHHHHhcc----CCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEecc
Q 039406          157 ---QRMLVYEFVLNNTLVFHLHG----KGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADF  221 (243)
Q Consensus       157 ---~~~lv~e~~~~g~L~~~l~~----~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DF  221 (243)
                         ..|+||||+++++|.+++..    .....+++..++.++.|++.||.|||.        +|+|||++.++.+||+||
T Consensus       112 ~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dikp~NIli~~~~~~kl~Df  191 (313)
T 3brb_A          112 GIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSNRNFLHRDLAARNCMLRDDMTVCVADF  191 (313)
T ss_dssp             ---CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHHTTTCCCCCCSGGGEEECTTSCEEECSC
T ss_pred             CCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCcceEEEcCCCcEEEeec
Confidence               35999999999999999842    123358999999999999999999987        468999999999999999


Q ss_pred             CCceecCC
Q 039406          222 GLAKIASD  229 (243)
Q Consensus       222 G~a~~~~~  229 (243)
                      |+++.+..
T Consensus       192 g~~~~~~~  199 (313)
T 3brb_A          192 GLSKKIYS  199 (313)
T ss_dssp             SCC-----
T ss_pred             Ccceeccc
Confidence            99987654

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=99.89  E-value=3.1e-23  Score=175.82  Aligned_cols=132  Identities=20%  Similarity=0.285  Sum_probs=115.4

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCch---------------h--------------HHHHHHHHHHHHhcCCCccceE
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGKE---------------G--------------EREFQAEVEIISRVHHKHLVSL  148 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~---------------~--------------~~~~~~E~~~l~~l~hp~iv~~  148 (243)
                      .++|.+.+.||+|+||.||+|.. .+..               .              .+.+.+|+.+|++++|+||+++
T Consensus        30 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~  108 (348)
T 2pml_X           30 INDYRIIRTLNQGKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTC  108 (348)
T ss_dssp             ETTEEEEEEEECCSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCC
T ss_pred             cCceEEEEEEcCCCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceE
Confidence            37899999999999999999987 3211               0              1789999999999999999999


Q ss_pred             EEEEEeCCeeEEEEeccCCCCHHHH------hccCCCCCCCHHHHHHHHHHHHHhhhHhhc---------CCCcEEECCC
Q 039406          149 VGYYTAGSQRMLVYEFVLNNTLVFH------LHGKGQPTMDWPTRIKIALGSAKGLAYLHD---------DLANILLDFK  213 (243)
Q Consensus       149 ~~~~~~~~~~~lv~e~~~~g~L~~~------l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~---------~~~NiLl~~~  213 (243)
                      ++++.+.+.+|+||||+++++|.++      +.......+++..++.++.|++.||.|||.         +++|||++.+
T Consensus       109 ~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~i~H~dl~p~Nil~~~~  188 (348)
T 2pml_X          109 EGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIHNEKNICHRDVKPSNILMDKN  188 (348)
T ss_dssp             SEEEESSSEEEEEEECCTTCBSSEESSSEESSCSSSCCCCCHHHHHHHHHHHHHHHHHHHHTSCEECCCCCGGGEEECTT
T ss_pred             EEEEeeCCeEEEEEeccCCCcHHHHHHHhhhhhhccccCCCHHHHHHHHHHHHHHHHHHhccCCEeecCCChHhEEEcCC
Confidence            9999999999999999999999998      655334569999999999999999999996         3589999999


Q ss_pred             CcEEEeccCCceecCCC
Q 039406          214 FEAKVADFGLAKIASDV  230 (243)
Q Consensus       214 ~~~kl~DFG~a~~~~~~  230 (243)
                      +.+||+|||+++.....
T Consensus       189 ~~~kl~dfg~~~~~~~~  205 (348)
T 2pml_X          189 GRVKLSDFGESEYMVDK  205 (348)
T ss_dssp             SCEEECCCTTCEECBTT
T ss_pred             CcEEEeccccccccccc
Confidence            99999999999986543

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=99.89  E-value=1e-22  Score=168.21  Aligned_cols=128  Identities=34%  Similarity=0.551  Sum_probs=109.4

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch--------------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCee
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE--------------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQR  158 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~--------------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~  158 (243)
                      ++|.+.+.||+|+||.||+|++..+.+                    ..+.+.+|+.+|++++|+||+++++++.+..  
T Consensus        19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~--   96 (287)
T 4f0f_A           19 NEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNPP--   96 (287)
T ss_dssp             TTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTTT--
T ss_pred             ccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCCC--
Confidence            689999999999999999998754321                    1167899999999999999999999987655  


Q ss_pred             EEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc----------CCCcEEECCCCc-----EEEeccCC
Q 039406          159 MLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD----------DLANILLDFKFE-----AKVADFGL  223 (243)
Q Consensus       159 ~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~----------~~~NiLl~~~~~-----~kl~DFG~  223 (243)
                      ++||||+++++|.+++..... .+++..++.++.|++.||.|||.          +++|||++.++.     +||+|||+
T Consensus        97 ~lv~e~~~~~~L~~~l~~~~~-~~~~~~~~~~~~~l~~~l~~lH~~~~~ivH~dikp~Nil~~~~~~~~~~~~kl~Dfg~  175 (287)
T 4f0f_A           97 RMVMEFVPCGDLYHRLLDKAH-PIKWSVKLRLMLDIALGIEYMQNQNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGL  175 (287)
T ss_dssp             EEEEECCTTCBHHHHHHCTTS-CCCHHHHHHHHHHHHHHHHHHHTSSSCCBCSCCSGGGEEESCCCTTCSCCEEECCCTT
T ss_pred             eEEEEecCCCCHHHHHhcccC-CccHHHHHHHHHHHHHHHHHHHhCCCCeecCCCCcceEEEeccCCCCceeEEeCCCCc
Confidence            799999999999988875543 58999999999999999999986          348999988776     99999999


Q ss_pred             ceecCC
Q 039406          224 AKIASD  229 (243)
Q Consensus       224 a~~~~~  229 (243)
                      ++....
T Consensus       176 ~~~~~~  181 (287)
T 4f0f_A          176 SQQSVH  181 (287)
T ss_dssp             CBCCSS
T ss_pred             cccccc
Confidence            986543

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=99.89  E-value=2.1e-23  Score=171.60  Aligned_cols=133  Identities=17%  Similarity=0.251  Sum_probs=112.1

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCc---------------hhHHHHHHHHHHHHhcCCCccceEEEEEEe--CCeeEE
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGK---------------EGEREFQAEVEIISRVHHKHLVSLVGYYTA--GSQRML  160 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~---------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~--~~~~~l  160 (243)
                      .++|.+.+.||+|+||.||++....+.               ...+.+.+|+.+|++++|+||+++++++.+  .+.+|+
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~l   84 (279)
T 2w5a_A            5 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYI   84 (279)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEEE
T ss_pred             hhheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEEE
Confidence            368999999999999999999875432               245678999999999999999999998754  668999


Q ss_pred             EEeccCCCCHHHHhccCC--CCCCCHHHHHHHHHHHHHhhhHhhc-------------CCCcEEECCCCcEEEeccCCce
Q 039406          161 VYEFVLNNTLVFHLHGKG--QPTMDWPTRIKIALGSAKGLAYLHD-------------DLANILLDFKFEAKVADFGLAK  225 (243)
Q Consensus       161 v~e~~~~g~L~~~l~~~~--~~~l~~~~~~~i~~~i~~~l~~lH~-------------~~~NiLl~~~~~~kl~DFG~a~  225 (243)
                      ||||+++++|.+++....  ...+++..++.++.|++.||.|||.             +++|||++.++.+||+|||+++
T Consensus        85 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~ivH~dl~p~NIl~~~~~~~kl~dfg~~~  164 (279)
T 2w5a_A           85 VMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLAR  164 (279)
T ss_dssp             EEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHC------CCCCCSGGGEEECSSSCEEECCCCHHH
T ss_pred             EEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHhcccCCCCeeEEeccchhhEEEcCCCCEEEecCchhe
Confidence            999999999999986532  2348999999999999999999985             3489999999999999999998


Q ss_pred             ecCCC
Q 039406          226 IASDV  230 (243)
Q Consensus       226 ~~~~~  230 (243)
                      .+...
T Consensus       165 ~~~~~  169 (279)
T 2w5a_A          165 ILNHD  169 (279)
T ss_dssp             HC---
T ss_pred             eeccc
Confidence            76543

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=99.89  E-value=6.2e-23  Score=171.83  Aligned_cols=130  Identities=22%  Similarity=0.254  Sum_probs=110.2

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc-------------hhHHHHHHHHHHHHhcCCCccceEEEEEEe----CCeeEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK-------------EGEREFQAEVEIISRVHHKHLVSLVGYYTA----GSQRMLV  161 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~-------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~----~~~~~lv  161 (243)
                      ++|.+.+.||+|+||.||+++...+.             ...+.+.+|+.+++.++|+||+++++++..    .+..|+|
T Consensus        29 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~lv  108 (317)
T 2buj_A           29 KHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHEAWLL  108 (317)
T ss_dssp             EEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEEEEEEE
T ss_pred             eEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCceeEEE
Confidence            67999999999999999999864432             245678899999999999999999999872    3478999


Q ss_pred             EeccCCCCHHHHhccC--CCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          162 YEFVLNNTLVFHLHGK--GQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       162 ~e~~~~g~L~~~l~~~--~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      |||+.+++|.+++...  ....+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++...
T Consensus       109 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~dlkp~NIl~~~~~~~kl~dfg~~~~~~  185 (317)
T 2buj_A          109 LPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHAKGYAHRDLKPTNILLGDEGQPVLMDLGSMNQAC  185 (317)
T ss_dssp             EECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCCSSCEESC
T ss_pred             EEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEcCCCCEEEEecCcchhcc
Confidence            9999999999988652  22358999999999999999999986        4689999999999999999988754

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=99.89  E-value=5.7e-23  Score=187.77  Aligned_cols=123  Identities=25%  Similarity=0.344  Sum_probs=106.2

Q ss_pred             ceeeecCceEEEEEEecCC-----------------chhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccCC
Q 039406          105 NLLRQDGFGYVHRGVLPNG-----------------KEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLN  167 (243)
Q Consensus       105 ~~lg~G~~g~V~~~~~~~~-----------------~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~  167 (243)
                      +.||+|+||.||+|.+...                 ....+.+.+|+.+|++++|+|||++++++.. +.++||||||.+
T Consensus       375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~-~~~~lv~E~~~~  453 (635)
T 4fl3_A          375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA-ESWMLVMEMAEL  453 (635)
T ss_dssp             EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEES-SSEEEEEECCTT
T ss_pred             CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec-CCEEEEEEccCC
Confidence            4799999999999965321                 1235789999999999999999999999864 568999999999


Q ss_pred             CCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          168 NTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       168 g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      |+|.+++....  .+++..++.++.||+.||.|||.        |++||||+.++.+||+|||+|+.+...
T Consensus       454 g~L~~~l~~~~--~l~~~~~~~i~~qi~~~L~yLH~~~iiHrDLkp~NILl~~~~~~kL~DFGla~~~~~~  522 (635)
T 4fl3_A          454 GPLNKYLQQNR--HVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRAD  522 (635)
T ss_dssp             EEHHHHHHHCT--TCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECCTTHHHHTTC-
T ss_pred             CCHHHHHhhCC--CCCHHHHHHHHHHHHHHHHHHHHCCEeCCCCChHhEEEeCCCCEEEEEcCCccccccC
Confidence            99999997654  48999999999999999999976        458999999999999999999987544

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=99.89  E-value=1.2e-22  Score=171.17  Aligned_cols=132  Identities=24%  Similarity=0.368  Sum_probs=112.8

Q ss_pred             CCCCccceeeecCceEEEEEEec----CC-------------chhHHHHHHHHHHHHhcCCCccceEEEEEEeCC--eeE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLP----NG-------------KEGEREFQAEVEIISRVHHKHLVSLVGYYTAGS--QRM  159 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~----~~-------------~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~--~~~  159 (243)
                      ++|.+.+.||+|+||.||+|++.    .+             ....+.+.+|+.+|++++|+||+++++++...+  .++
T Consensus        41 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~  120 (326)
T 2w1i_A           41 RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLK  120 (326)
T ss_dssp             GGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC----CCE
T ss_pred             HHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCCCceE
Confidence            56889999999999999999842    11             124567899999999999999999999987544  789


Q ss_pred             EEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCC
Q 039406          160 LVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVN  231 (243)
Q Consensus       160 lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~  231 (243)
                      +||||+++++|.+++..... .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++.+....
T Consensus       121 lv~e~~~~~~L~~~l~~~~~-~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dikp~NIli~~~~~~kL~Dfg~~~~~~~~~  199 (326)
T 2w1i_A          121 LIMEYLPYGSLRDYLQKHKE-RIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDK  199 (326)
T ss_dssp             EEECCCTTCBHHHHHHHSTT-SSCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEEEETTEEEECCCTTCEECCSSC
T ss_pred             EEEECCCCCCHHHHHHhccc-CCCHHHHHHHHHHHHHHHHHHHhCCEeccCCCcceEEEcCCCcEEEecCcchhhccccc
Confidence            99999999999999976543 48999999999999999999986        5689999999999999999999876543

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=99.89  E-value=2.2e-22  Score=175.91  Aligned_cols=131  Identities=18%  Similarity=0.238  Sum_probs=112.7

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCch------------hHHHHHHHHHHHHhc------CCCccceEEEEEEeCCeeE
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGKE------------GEREFQAEVEIISRV------HHKHLVSLVGYYTAGSQRM  159 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~------------~~~~~~~E~~~l~~l------~hp~iv~~~~~~~~~~~~~  159 (243)
                      .++|.+.+.||+|+||.||+|.+..+.+            ....+.+|+.+|+.+      +|+||+++++++...+.+|
T Consensus        96 ~~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~~  175 (429)
T 3kvw_A           96 AYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNEKRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHIC  175 (429)
T ss_dssp             TTTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETTEEE
T ss_pred             cCcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCccchHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccCCeEE
Confidence            3679999999999999999998765432            346677888888877      5779999999999999999


Q ss_pred             EEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCc--EEEeccCCceecCC
Q 039406          160 LVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFE--AKVADFGLAKIASD  229 (243)
Q Consensus       160 lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~--~kl~DFG~a~~~~~  229 (243)
                      +||||+. ++|.+++.......+++..++.++.||+.||.|||.        |++||||+.++.  +||+|||+|+....
T Consensus       176 lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlKp~NILl~~~~~~~vkL~DFG~a~~~~~  254 (429)
T 3kvw_A          176 MTFELLS-MNLYELIKKNKFQGFSLPLVRKFAHSILQCLDALHKNRIIHCDLKPENILLKQQGRSGIKVIDFGSSCYEHQ  254 (429)
T ss_dssp             EEECCCC-CBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHHTEECSCCSGGGEEESSTTSCCEEECCCTTCEETTC
T ss_pred             EEEeccC-CCHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEEccCCCcceEEeecccceecCC
Confidence            9999995 599999887665569999999999999999999976        568999999887  99999999987654

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=99.88  E-value=1.3e-22  Score=167.73  Aligned_cols=134  Identities=20%  Similarity=0.295  Sum_probs=115.4

Q ss_pred             HHHhCCCCccceeeecCceEEEEEEecCCc---------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeE
Q 039406           95 ARATDGFSDANLLRQDGFGYVHRGVLPNGK---------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRM  159 (243)
Q Consensus        95 ~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~---------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~  159 (243)
                      ....++|.+.+.||+|+||.||+|....+.               ...+.+.+|+.+|++++|+||+++++++...+.+|
T Consensus        18 ~~~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   97 (287)
T 2wei_A           18 GTFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFY   97 (287)
T ss_dssp             HHHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEE
T ss_pred             HHHhhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeCCCeEE
Confidence            344578999999999999999999875432               14577899999999999999999999999999999


Q ss_pred             EEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCC---CcEEEeccCCceecC
Q 039406          160 LVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFK---FEAKVADFGLAKIAS  228 (243)
Q Consensus       160 lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~---~~~kl~DFG~a~~~~  228 (243)
                      +||||+.+++|.+++....  .+++..++.++.|++.||.|||.        +++|||++.+   +.+||+|||+++...
T Consensus        98 lv~e~~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~~~~  175 (287)
T 2wei_A           98 IVGELYTGGELFDEIIKRK--RFSEHDAARIIKQVFSGITYMHKHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQ  175 (287)
T ss_dssp             EEECCCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESCSSTTCCEEECSTTGGGTBC
T ss_pred             EEEEccCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCeeccCCChhhEEEecCCCcccEEEeccCcceeec
Confidence            9999999999998886544  48999999999999999999986        4589999754   479999999998765


Q ss_pred             CC
Q 039406          229 DV  230 (243)
Q Consensus       229 ~~  230 (243)
                      ..
T Consensus       176 ~~  177 (287)
T 2wei_A          176 QN  177 (287)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=99.88  E-value=4e-23  Score=174.00  Aligned_cols=130  Identities=25%  Similarity=0.342  Sum_probs=109.3

Q ss_pred             CCCCccceeeecCceEEEEEEecCC-------------------chhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNG-------------------KEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRM  159 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~-------------------~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~  159 (243)
                      ++|.+.+.||+|+||.||+|++...                   ......+.+|+.+|++++|+||+++++++...+..|
T Consensus        30 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~  109 (327)
T 2yfx_A           30 KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRF  109 (327)
T ss_dssp             GGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCE
T ss_pred             hheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCCCCcE
Confidence            7899999999999999999984321                   124567889999999999999999999999999999


Q ss_pred             EEEeccCCCCHHHHhccCCC-----CCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECC---CCcEEEeccCC
Q 039406          160 LVYEFVLNNTLVFHLHGKGQ-----PTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDF---KFEAKVADFGL  223 (243)
Q Consensus       160 lv~e~~~~g~L~~~l~~~~~-----~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~---~~~~kl~DFG~  223 (243)
                      +||||+++++|.+++.....     ..+++..++.++.|++.||.|||.        +++|||++.   +..+||+|||+
T Consensus       110 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~i~H~dlkp~NIli~~~~~~~~~kl~Dfg~  189 (327)
T 2yfx_A          110 ILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGM  189 (327)
T ss_dssp             EEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESCSSTTCCEEECCCHH
T ss_pred             EEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHhhCCeecCcCCHhHEEEecCCCcceEEECcccc
Confidence            99999999999999976532     348899999999999999999986        458999984   45699999999


Q ss_pred             ceecC
Q 039406          224 AKIAS  228 (243)
Q Consensus       224 a~~~~  228 (243)
                      ++.+.
T Consensus       190 ~~~~~  194 (327)
T 2yfx_A          190 ARDIY  194 (327)
T ss_dssp             HHHHH
T ss_pred             ccccc
Confidence            98654

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=99.88  E-value=1.9e-23  Score=177.91  Aligned_cols=131  Identities=17%  Similarity=0.221  Sum_probs=111.8

Q ss_pred             CCCCccceeeecCceEEEEEEecCC--------ch--------hHHHHHHHHHHHHhcCCCccce---------------
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNG--------KE--------GEREFQAEVEIISRVHHKHLVS---------------  147 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~--------~~--------~~~~~~~E~~~l~~l~hp~iv~---------------  147 (243)
                      ++|.+.+.||+|+||.||+|+...+        ..        ..+.+.+|+.+|++++|+||++               
T Consensus        42 ~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~i~~  121 (352)
T 2jii_A           42 RQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKDGRLFNEQNFFQRAAKPLQVNKWKKLYSTPLLAIPT  121 (352)
T ss_dssp             CEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETTSTHHHHHHHHHHHCCHHHHHHHHHHTTCTTCSCCC
T ss_pred             CeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEecccchHHHHHHHHHHhcccchhhhhhhhccCCccCccc
Confidence            6799999999999999999988753        11        2245889999999999999988               


Q ss_pred             EEEEEEe-CCeeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCC--cE
Q 039406          148 LVGYYTA-GSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKF--EA  216 (243)
Q Consensus       148 ~~~~~~~-~~~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~--~~  216 (243)
                      +++++.. ++..|+||||+ +++|.+++.......+++..++.++.|++.||.|||.        +++|||++.++  .+
T Consensus       122 ~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dikp~NIl~~~~~~~~~  200 (352)
T 2jii_A          122 CMGFGVHQDKYRFLVLPSL-GRSLQSALDVSPKHVLSERSVLQVACRLLDALEFLHENEYVHGNVTAENIFVDPEDQSQV  200 (352)
T ss_dssp             CCEEEEETTTEEEEEEECC-CEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCCGGGEEEETTEEEEE
T ss_pred             hhhccccCCcEEEEEecCC-CcCHHHHHHhCCcCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCCHHHEEEcCCCCceE
Confidence            6777776 77899999999 9999999986533469999999999999999999986        46899999988  99


Q ss_pred             EEeccCCceecCCC
Q 039406          217 KVADFGLAKIASDV  230 (243)
Q Consensus       217 kl~DFG~a~~~~~~  230 (243)
                      ||+|||+++.+...
T Consensus       201 kl~Dfg~a~~~~~~  214 (352)
T 2jii_A          201 TLAGYGFAFRYCPS  214 (352)
T ss_dssp             EECCGGGCBCSSGG
T ss_pred             EEecCcceeeccCC
Confidence            99999999887543

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=99.88  E-value=3.2e-23  Score=177.77  Aligned_cols=128  Identities=17%  Similarity=0.312  Sum_probs=96.1

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCc---------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeC------C
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGK---------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAG------S  156 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~---------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~------~  156 (243)
                      .++|.+.+.||+|+||.||+|.+..+.               ...+.+.+|+.+|+.++|+||+++++++...      +
T Consensus        28 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~~  107 (367)
T 2fst_X           28 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFN  107 (367)
T ss_dssp             ETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred             CCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccCC
Confidence            378999999999999999999765432               1356788999999999999999999998754      5


Q ss_pred             eeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          157 QRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       157 ~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      .+|+||||+ +++|.+++...   .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++...
T Consensus       108 ~~~lv~e~~-~~~L~~~~~~~---~l~~~~~~~i~~qi~~aL~~LH~~givH~Dlkp~NIll~~~~~~kL~DFG~a~~~~  183 (367)
T 2fst_X          108 DVYLVTHLM-GADLNNIVKCQ---KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTA  183 (367)
T ss_dssp             CCEEEEECC-CEECC-----C---CCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECC--------
T ss_pred             eEEEEeccc-CCCHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHhhEEECCCCCEEEeecccccccc
Confidence            689999999 67999888642   49999999999999999999976        5689999999999999999998765


Q ss_pred             C
Q 039406          229 D  229 (243)
Q Consensus       229 ~  229 (243)
                      .
T Consensus       184 ~  184 (367)
T 2fst_X          184 D  184 (367)
T ss_dssp             -
T ss_pred             c
Confidence            4

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=99.88  E-value=1.6e-22  Score=171.73  Aligned_cols=128  Identities=17%  Similarity=0.287  Sum_probs=111.0

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCc--------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeC-----Cee
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGK--------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAG-----SQR  158 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~--------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~-----~~~  158 (243)
                      .++|.+.+.||+|+||.||+|.+..+.              .....+.+|+.+|++++|+||+++++++...     +..
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~   89 (353)
T 2b9h_A           10 SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNEV   89 (353)
T ss_dssp             CTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCCE
T ss_pred             ccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccceE
Confidence            478999999999999999999876432              1356778999999999999999999987754     679


Q ss_pred             EEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          159 MLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       159 ~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      |+||||+. ++|.+++...   .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++.+..
T Consensus        90 ~lv~e~~~-~~L~~~~~~~---~~~~~~~~~~~~qi~~~L~~LH~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~  164 (353)
T 2b9h_A           90 YIIQELMQ-TDLHRVISTQ---MLSDDHIQYFIYQTLRAVKVLHGSNVIHRDLKPSNLLINSNCDLKVCDFGLARIIDE  164 (353)
T ss_dssp             EEEECCCS-EEHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCCTTCEECC-
T ss_pred             EEEEeccC-ccHHHHHhhc---CCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEEcCCCcEEEEeccccccccc
Confidence            99999997 5999988753   48999999999999999999986        46899999999999999999998754

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.88  E-value=6.1e-23  Score=189.13  Aligned_cols=136  Identities=21%  Similarity=0.329  Sum_probs=111.9

Q ss_pred             hCCCCccceeeecCceEEEEEEecC--Cc-------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCe-----
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPN--GK-------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQ-----  157 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~--~~-------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~-----  157 (243)
                      .++|.+.+.||+|+||.||++++..  +.             .....+.+|+.+|++++||||+++++++...+.     
T Consensus        79 ~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~  158 (681)
T 2pzi_A           79 AGQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPV  158 (681)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCEE
T ss_pred             CCceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCce
Confidence            3789999999999999999998753  11             234578899999999999999999999987665     


Q ss_pred             eEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          158 RMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       158 ~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      .|||||||++++|.+++..    .+++..++.++.||+.+|.|||.        ||+|||++.+ .+||+|||+++.+..
T Consensus       159 ~~lv~E~~~g~~L~~~~~~----~l~~~~~~~~~~qi~~aL~~lH~~giiHrDlkp~NIll~~~-~~kl~DFG~a~~~~~  233 (681)
T 2pzi_A          159 GYIVMEYVGGQSLKRSKGQ----KLPVAEAIAYLLEILPALSYLHSIGLVYNDLKPENIMLTEE-QLKLIDLGAVSRINS  233 (681)
T ss_dssp             EEEEEECCCCEECC----C----CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECSS-CEEECCCTTCEETTC
T ss_pred             eEEEEEeCCCCcHHHHHhC----CCCHHHHHHHHHHHHHHHHHHHHCCCeecccChHHeEEeCC-cEEEEecccchhccc
Confidence            7999999999999987754    48999999999999999999986        5689999875 899999999998765


Q ss_pred             CCceeeeccccccC
Q 039406          230 VNTHVSTRVMGTFG  243 (243)
Q Consensus       230 ~~~~~~~~~~GT~G  243 (243)
                      .     ...+||++
T Consensus       234 ~-----~~~~gt~~  242 (681)
T 2pzi_A          234 F-----GYLYGTPG  242 (681)
T ss_dssp             C-----SCCCCCTT
T ss_pred             C-----CccCCCcc
Confidence            4     23456653

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=99.88  E-value=7.7e-23  Score=171.03  Aligned_cols=129  Identities=26%  Similarity=0.376  Sum_probs=105.7

Q ss_pred             CCCCccceeeecCceEEEEEEecCC---------chhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccCCCC
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNG---------KEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNT  169 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~---------~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~g~  169 (243)
                      ++|.+.+.||+|+||.||++.+...         ....+.+.+|+.+|++++||||+++++++.  +..|+||||+++++
T Consensus         8 ~~~~~~~~lg~G~~g~V~~~~~~~~~vavK~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~--~~~~lv~e~~~~~~   85 (307)
T 2eva_A            8 KEIEVEEVVGRGAFGVVCKAKWRAKDVAIKQIESESERKAFIVELRQLSRVNHPNIVKLYGACL--NPVCLVMEYAEGGS   85 (307)
T ss_dssp             GGEEEEEEEECCSSSEEEEEEETTEEEEEEECSSTTHHHHHHHHHHHHHHCCCTTBCCEEEBCT--TTTEEEEECCTTCB
T ss_pred             hHeeeeeEeecCCCceEEEEEECCeeEEEEEecChhHHHHHHHHHHHHhcCCCCCcCeEEEEEc--CCcEEEEEcCCCCC
Confidence            5788899999999999999976542         224677899999999999999999999876  45899999999999


Q ss_pred             HHHHhccCCC-CCCCHHHHHHHHHHHHHhhhHhhc-----------CCCcEEECCCCc-EEEeccCCceecCC
Q 039406          170 LVFHLHGKGQ-PTMDWPTRIKIALGSAKGLAYLHD-----------DLANILLDFKFE-AKVADFGLAKIASD  229 (243)
Q Consensus       170 L~~~l~~~~~-~~l~~~~~~~i~~~i~~~l~~lH~-----------~~~NiLl~~~~~-~kl~DFG~a~~~~~  229 (243)
                      |.+++..... ..+++..++.++.|++.||.|||.           +++|||++.++. +||+|||++.....
T Consensus        86 L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~~~~  158 (307)
T 2eva_A           86 LYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQT  158 (307)
T ss_dssp             HHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC------
T ss_pred             HHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEccccccccccc
Confidence            9999976542 237888999999999999999987           348999988876 79999999986643

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=99.88  E-value=2e-22  Score=167.11  Aligned_cols=123  Identities=8%  Similarity=-0.041  Sum_probs=107.7

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc----------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK----------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVY  162 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~----------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  162 (243)
                      ++|.+.+.||+|+||.||+|++..+.                ...+.+.+|+.++++++|+||+++++++.+.+..|+||
T Consensus        31 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  110 (286)
T 3uqc_A           31 GRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVVA  110 (286)
T ss_dssp             TTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             CcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECCcEEEEE
Confidence            67999999999999999999876432                13477899999999999999999999999999999999


Q ss_pred             eccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCce
Q 039406          163 EFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAK  225 (243)
Q Consensus       163 e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~  225 (243)
                      |||+|++|.+++...    .....++.++.|++.||.|||.        |++|||++.++.+||+++|...
T Consensus       111 e~~~g~~L~~~l~~~----~~~~~~~~i~~ql~~aL~~lH~~givH~Dikp~NIll~~~g~~kl~~~~~~~  177 (286)
T 3uqc_A          111 EWIRGGSLQEVADTS----PSPVGAIRAMQSLAAAADAAHRAGVALSIDHPSRVRVSIDGDVVLAYPATMP  177 (286)
T ss_dssp             ECCCEEEHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEEETTSCEEECSCCCCT
T ss_pred             EecCCCCHHHHHhcC----CChHHHHHHHHHHHHHHHHHHHCCCccCCCCcccEEEcCCCCEEEEeccccC
Confidence            999999999999532    4555788899999999999986        5689999999999999887654

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=99.88  E-value=2.4e-23  Score=171.35  Aligned_cols=132  Identities=27%  Similarity=0.402  Sum_probs=107.5

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCc---------hhHHHHHHHHHHHHhcCCCccceEEEEEEeC-CeeEEEEeccCC
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGK---------EGEREFQAEVEIISRVHHKHLVSLVGYYTAG-SQRMLVYEFVLN  167 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~---------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~-~~~~lv~e~~~~  167 (243)
                      .++|.+.+.||+|+||.||++......         ...+.+.+|+.+|++++|+||+++++++... +..|+||||+++
T Consensus        20 ~~~y~~~~~lg~G~~g~V~~~~~~~~~vavK~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~~~~   99 (278)
T 1byg_A           20 MKELKLLQTIGKGEFGDVMLGDYRGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAK   99 (278)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTEEEEEEECCCCC--HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECCCTT
T ss_pred             hhhceEEeEEecCCCceEEEEEEcCCEEEEEEecchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCceEEEEecCCC
Confidence            367999999999999999999765321         2467789999999999999999999987654 579999999999


Q ss_pred             CCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          168 NTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       168 g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      ++|.+++.......+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++....
T Consensus       100 ~~L~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~  169 (278)
T 1byg_A          100 GSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASS  169 (278)
T ss_dssp             EEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTSCEEECCCCC------
T ss_pred             CCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHhCCccccCCCcceEEEeCCCcEEEeeccccccccc
Confidence            999999976443337888999999999999999986        45899999999999999999987654

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=99.88  E-value=3e-22  Score=168.99  Aligned_cols=128  Identities=24%  Similarity=0.390  Sum_probs=104.7

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc--------hhHHHHHHHHHHH--HhcCCCccceEEEEEEe-----CCeeEEEEe
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK--------EGEREFQAEVEII--SRVHHKHLVSLVGYYTA-----GSQRMLVYE  163 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~--------~~~~~~~~E~~~l--~~l~hp~iv~~~~~~~~-----~~~~~lv~e  163 (243)
                      ++|.+.+.||+|+||.||+|+.....        .....+..|.+++  ..++|+||+++++.+..     ...+|+|||
T Consensus        13 ~~y~~~~~lg~G~~g~Vy~~~~~~~~vavK~~~~~~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~lv~e   92 (336)
T 3g2f_A           13 DNLKLLELIGRGRYGAVYKGSLDERPVAVKVFSFANRQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRMEYLLVME   92 (336)
T ss_dssp             TSEEEEEEEEECSSEEEEEEEETTEEEEEEEEEGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCEEEEEEEC
T ss_pred             HHhheeeecccCCCeEEEEEEECCeEEEEEEeeccchhhHHHHHHHHHHHhccCcchhhheecccccccCCCceEEEEEe
Confidence            78999999999999999999764432        1334455555554  45899999999986542     236789999


Q ss_pred             ccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc-----------------CCCcEEECCCCcEEEeccCCcee
Q 039406          164 FVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD-----------------DLANILLDFKFEAKVADFGLAKI  226 (243)
Q Consensus       164 ~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~-----------------~~~NiLl~~~~~~kl~DFG~a~~  226 (243)
                      ||++|+|.+++....   .++..++.++.|++.||.|||.                 |++|||++.++.+||+|||+++.
T Consensus        93 ~~~~g~L~~~l~~~~---~~~~~~~~i~~qi~~~L~~LH~~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kL~DFG~a~~  169 (336)
T 3g2f_A           93 YYPNGSLXKYLSLHT---SDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGLSMR  169 (336)
T ss_dssp             CCTTCBHHHHHHHCC---BCHHHHHHHHHHHHHHHHHHHCCBCCGGGCBCCEECSSCSGGGEEECTTSCEEECCCTTCEE
T ss_pred             cCCCCcHHHHHhhcc---cchhHHHHHHHHHHHHHHHHHhhhccccccccceeecccccceEEEcCCCcEEEeeccceee
Confidence            999999999997553   6888999999999999999995                 35899999999999999999998


Q ss_pred             cCC
Q 039406          227 ASD  229 (243)
Q Consensus       227 ~~~  229 (243)
                      +..
T Consensus       170 ~~~  172 (336)
T 3g2f_A          170 LTG  172 (336)
T ss_dssp             CSS
T ss_pred             ccc
Confidence            754

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=99.88  E-value=4.1e-23  Score=178.63  Aligned_cols=132  Identities=27%  Similarity=0.331  Sum_probs=105.5

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch--------hHHHHHHHHHHHHhcCCCccceEEEEEEeCC------eeEEEEec
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE--------GEREFQAEVEIISRVHHKHLVSLVGYYTAGS------QRMLVYEF  164 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~--------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~------~~~lv~e~  164 (243)
                      .+|...+.||+|+||.||+|++..+.+        ......+|+.+|+.++|+||++++++|...+      .+|+||||
T Consensus        40 ~~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~~lv~e~  119 (394)
T 4e7w_A           40 IAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKRFKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLNLVLEY  119 (394)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECCTTSCCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEEEEEEEC
T ss_pred             ceEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecCcchHHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEEEEEeec
Confidence            569999999999999999998766542        1223357999999999999999999986544      38899999


Q ss_pred             cCCCCHHHHhc-cCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEEC-CCCcEEEeccCCceecCCC
Q 039406          165 VLNNTLVFHLH-GKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLD-FKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       165 ~~~g~L~~~l~-~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~-~~~~~kl~DFG~a~~~~~~  230 (243)
                      |.++.+..+.. ......+++..++.++.|++.||.|||.        ||+|||++ .++.+||+|||+|+.+...
T Consensus       120 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~~kL~DFG~a~~~~~~  195 (394)
T 4e7w_A          120 VPETVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIHSIGICHRDIKPQNLLLDPPSGVLKLIDFGSAKILIAG  195 (394)
T ss_dssp             CSEEHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEETTTTEEEECCCTTCEECCTT
T ss_pred             cCccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCCccCCCCCHHHEEEcCCCCcEEEeeCCCcccccCC
Confidence            98754433321 1112358999999999999999999976        56899998 7899999999999987543

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=99.88  E-value=1.7e-22  Score=166.94  Aligned_cols=132  Identities=19%  Similarity=0.175  Sum_probs=101.5

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCch---------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEE
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGKE---------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVY  162 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~---------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  162 (243)
                      .++|.+.+.||+|+||.||+|....+.+               ..+.+.++...++.++|+||+++++++.+.+..|+||
T Consensus         6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~lv~   85 (290)
T 3fme_A            6 ADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICM   85 (290)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEEEEE
T ss_pred             HHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEEEEE
Confidence            4789999999999999999998754321               2233444555678889999999999999999999999


Q ss_pred             eccCCCCHHHHhcc--CCCCCCCHHHHHHHHHHHHHhhhHhhc---------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          163 EFVLNNTLVFHLHG--KGQPTMDWPTRIKIALGSAKGLAYLHD---------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       163 e~~~~g~L~~~l~~--~~~~~l~~~~~~~i~~~i~~~l~~lH~---------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      ||+++ +|.+++..  .....+++..++.++.|++.||.|||.         +++|||++.++.+||+|||+++.+...
T Consensus        86 e~~~~-~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~  163 (290)
T 3fme_A           86 ELMDT-SLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKLSVIHRDVKPSNVLINALGQVKMCDFGISGYLVDD  163 (290)
T ss_dssp             ECCSE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHSCCCCCCCSGGGCEECTTCCEEBCCC---------
T ss_pred             ehhcc-chHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhcCCeecCCCCHHHEEECCCCCEEEeecCCccccccc
Confidence            99975 88777643  122359999999999999999999985         358999999999999999999877543

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=99.88  E-value=2e-23  Score=179.40  Aligned_cols=130  Identities=13%  Similarity=0.137  Sum_probs=103.5

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc----------------hhHHHHHHHH---HHHHhcCCCccceEE-------EEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK----------------EGEREFQAEV---EIISRVHHKHLVSLV-------GYY  152 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~----------------~~~~~~~~E~---~~l~~l~hp~iv~~~-------~~~  152 (243)
                      ++|.+.+.||+|+||.||+|++..+.                ...+.+.+|+   .+|++++|||||+++       +++
T Consensus        73 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~~  152 (377)
T 3byv_A           73 RTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLV  152 (377)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEEE
T ss_pred             ceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhhh
Confidence            56788899999999999999865432                2457788999   555566899999998       777


Q ss_pred             EeCCe-----------------eEEEEeccCCCCHHHHhccCCC-----CCCCHHHHHHHHHHHHHhhhHhhc-------
Q 039406          153 TAGSQ-----------------RMLVYEFVLNNTLVFHLHGKGQ-----PTMDWPTRIKIALGSAKGLAYLHD-------  203 (243)
Q Consensus       153 ~~~~~-----------------~~lv~e~~~~g~L~~~l~~~~~-----~~l~~~~~~~i~~~i~~~l~~lH~-------  203 (243)
                      .+.+.                 .||||||| +|+|.+++...+.     ..+++..++.++.|++.||.|||.       
T Consensus       153 ~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrD  231 (377)
T 3byv_A          153 KDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYGLVHTY  231 (377)
T ss_dssp             ECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHHTTEECSC
T ss_pred             hccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHhCCeecCC
Confidence            66543                 89999999 6799999975432     112357788899999999999976       


Q ss_pred             -CCCcEEECCCCcEEEeccCCceecCC
Q 039406          204 -DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       204 -~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                       ||+|||++.++.+||+|||+|+....
T Consensus       232 ikp~NIll~~~~~~kL~DFG~a~~~~~  258 (377)
T 3byv_A          232 LRPVDIVLDQRGGVFLTGFEHLVRDGA  258 (377)
T ss_dssp             CCGGGEEECTTCCEEECCGGGCEETTC
T ss_pred             CCHHHEEEcCCCCEEEEechhheecCC
Confidence             56899999999999999999997543

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=99.88  E-value=2.1e-22  Score=172.78  Aligned_cols=127  Identities=20%  Similarity=0.315  Sum_probs=107.1

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCch---------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCee----
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGKE---------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQR----  158 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~---------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~----  158 (243)
                      .++|...+.||+|+||.||+|.+..+.+               ..+.+.+|+.+|+.++|+||+++++++...+..    
T Consensus        41 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~  120 (371)
T 4exu_A           41 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY  120 (371)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTCC
T ss_pred             cccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccce
Confidence            4789999999999999999998665421               357788999999999999999999999877655    


Q ss_pred             --EEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          159 --MLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       159 --~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                        |+||||+. ++|.+++..    .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++...
T Consensus       121 ~~~lv~e~~~-~~l~~~~~~----~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~  195 (371)
T 4exu_A          121 DFYLVMPFMQ-TDLQKIMGM----EFSEEKIQYLVYQMLKGLKYIHSAGVVHRDLKPGNLAVNEDCELKILDFGLARHAD  195 (371)
T ss_dssp             CCEEEEECCC-EEHHHHTTS----CCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECSTTCC----
T ss_pred             eEEEEEcccc-ccHHHHhhc----CCCHHHHHHHHHHHHHHHHHHHHCCCcCCCcCHHHeEECCCCCEEEEecCcccccc
Confidence              99999997 589888743    38999999999999999999986        5689999999999999999998765


Q ss_pred             C
Q 039406          229 D  229 (243)
Q Consensus       229 ~  229 (243)
                      .
T Consensus       196 ~  196 (371)
T 4exu_A          196 A  196 (371)
T ss_dssp             -
T ss_pred             c
Confidence            4

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=99.88  E-value=2.1e-22  Score=171.48  Aligned_cols=139  Identities=22%  Similarity=0.211  Sum_probs=101.3

Q ss_pred             HHHHHHhCCCCccceeeecCceEEEEEEecCCch------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCe--
Q 039406           92 EELARATDGFSDANLLRQDGFGYVHRGVLPNGKE------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQ--  157 (243)
Q Consensus        92 ~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~--  157 (243)
                      .+.....++|.+.+.||+|+||.||+|++..+..            ....+.+|+..|+.++|+||+++++++...+.  
T Consensus        16 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~~~   95 (360)
T 3e3p_A           16 ERSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPRFRNRELQIMQDLAVLHHPNIVQLQSYFYTLGERD   95 (360)
T ss_dssp             HHHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECCTTCCCHHHHHHHHHHHHCCTTBCCEEEEEEEECSSC
T ss_pred             hhchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCccccHHHHHHHHHHHhcCCCCcccHHHhhhcccccc
Confidence            3456667999999999999999999998765422            34456778888999999999999999876443  


Q ss_pred             -----eEEEEeccCCCCHHHHhcc--CCCCCCCHHHHHHHHHHHHHhhhHhh--c--------CCCcEEECC-CCcEEEe
Q 039406          158 -----RMLVYEFVLNNTLVFHLHG--KGQPTMDWPTRIKIALGSAKGLAYLH--D--------DLANILLDF-KFEAKVA  219 (243)
Q Consensus       158 -----~~lv~e~~~~g~L~~~l~~--~~~~~l~~~~~~~i~~~i~~~l~~lH--~--------~~~NiLl~~-~~~~kl~  219 (243)
                           +++||||+.+ +|.+.+..  .....+++..+..++.|++.||.|||  .        +++|||++. ++.+||+
T Consensus        96 ~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~~~ivH~Dlkp~NIll~~~~~~~kl~  174 (360)
T 3e3p_A           96 RRDIYLNVVMEYVPD-TLHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHLPSVNVCHRDIKPHNVLVNEADGTLKLC  174 (360)
T ss_dssp             TTCEEEEEEEECCSC-BHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHTSTTTCCBCSCCCGGGEEEETTTTEEEEC
T ss_pred             ccceeEEEEeecccc-cHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhCCCCCeecCcCCHHHEEEeCCCCcEEEe
Confidence                 8899999977 55443331  22335889999999999999999999  5        568999986 8999999


Q ss_pred             ccCCceecCCCC
Q 039406          220 DFGLAKIASDVN  231 (243)
Q Consensus       220 DFG~a~~~~~~~  231 (243)
                      |||+++.+....
T Consensus       175 Dfg~a~~~~~~~  186 (360)
T 3e3p_A          175 DFGSAKKLSPSE  186 (360)
T ss_dssp             CCTTCBCCCTTS
T ss_pred             eCCCceecCCCC
Confidence            999999876543

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=99.88  E-value=5.9e-23  Score=171.71  Aligned_cols=134  Identities=22%  Similarity=0.252  Sum_probs=105.9

Q ss_pred             HHHhCCCCccceeeecCceEEEEEEecCCch-------------------hHHHHHHHHHHHHhc----CCCccceEEEE
Q 039406           95 ARATDGFSDANLLRQDGFGYVHRGVLPNGKE-------------------GEREFQAEVEIISRV----HHKHLVSLVGY  151 (243)
Q Consensus        95 ~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~-------------------~~~~~~~E~~~l~~l----~hp~iv~~~~~  151 (243)
                      ....++|.+.+.||+|+||.||+|++..+.+                   ....+.+|+.+++++    +|+||++++++
T Consensus        27 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~~  106 (312)
T 2iwi_A           27 EAFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLDW  106 (312)
T ss_dssp             ------CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEEE
T ss_pred             hhhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEEE
Confidence            3445789999999999999999998654321                   122355799999998    89999999999


Q ss_pred             EEeCCeeEEEEec-cCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEEC-CCCcEEEecc
Q 039406          152 YTAGSQRMLVYEF-VLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLD-FKFEAKVADF  221 (243)
Q Consensus       152 ~~~~~~~~lv~e~-~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~-~~~~~kl~DF  221 (243)
                      +...+..++|||| +.+++|.+++...+  .+++..++.++.|++.||.|||.        +++|||++ .++.+||+||
T Consensus       107 ~~~~~~~~~v~e~~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~kl~df  184 (312)
T 2iwi_A          107 FETQEGFMLVLERPLPAQDLFDYITEKG--PLGEGPSRCFFGQVVAAIQHCHSRGVVHRDIKDENILIDLRRGCAKLIDF  184 (312)
T ss_dssp             C-----CEEEEECCSSEEEHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHHTEECCCCSGGGEEEETTTTEEEECCC
T ss_pred             EecCCeEEEEEEecCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCeeecCCChhhEEEeCCCCeEEEEEc
Confidence            9999999999999 78999999997644  48999999999999999999976        45899998 7899999999


Q ss_pred             CCceecCCC
Q 039406          222 GLAKIASDV  230 (243)
Q Consensus       222 G~a~~~~~~  230 (243)
                      |+++.+...
T Consensus       185 g~~~~~~~~  193 (312)
T 2iwi_A          185 GSGALLHDE  193 (312)
T ss_dssp             SSCEECCSS
T ss_pred             chhhhcccC
Confidence            999987654

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=99.88  E-value=7.5e-23  Score=178.45  Aligned_cols=131  Identities=24%  Similarity=0.308  Sum_probs=104.5

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch---------hHHHHHHHHHHHHhcCCCccceEEEEEEeC------CeeEEEEe
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE---------GEREFQAEVEIISRVHHKHLVSLVGYYTAG------SQRMLVYE  163 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~---------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~------~~~~lv~e  163 (243)
                      .+|...+.||+|+||.||+|++..+.+         ....+.+|+++|++++|+|||+++++|...      ..+++|||
T Consensus        54 ~~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~~lv~e  133 (420)
T 1j1b_A           54 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLD  133 (420)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCTTSCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEEEEEEE
T ss_pred             ceEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccchhHHHHHHHHHHcCCCCccceeeEEeccCCCCcceeEEeehh
Confidence            468899999999999999998865432         123345799999999999999999988542      24779999


Q ss_pred             ccCCCCHHHHhcc--CCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCC-CcEEEeccCCceecCCC
Q 039406          164 FVLNNTLVFHLHG--KGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFK-FEAKVADFGLAKIASDV  230 (243)
Q Consensus       164 ~~~~g~L~~~l~~--~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~-~~~kl~DFG~a~~~~~~  230 (243)
                      |+.+ +|.+++..  .....+++..++.++.||+.||.|||.        |++||||+.+ +.+||+|||+|+.+...
T Consensus       134 ~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NILl~~~~~~~kl~DFG~a~~~~~~  210 (420)
T 1j1b_A          134 YVPE-TVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRG  210 (420)
T ss_dssp             CCCE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTTTEECSCCSGGGEEEETTTTEEEECCCTTCEECCTT
T ss_pred             cccc-cHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCChhhEEEeCCCCeEEeccchhhhhcccC
Confidence            9976 66655532  122358999999999999999999986        5689999965 67899999999987543

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=99.88  E-value=2.7e-22  Score=173.97  Aligned_cols=130  Identities=19%  Similarity=0.291  Sum_probs=97.6

Q ss_pred             CCCCc-cceeeecCceEEEEEEecCCc-------------hhHHHHHHHHHHHHhcCCCccceEEEEEEe--CCeeEEEE
Q 039406           99 DGFSD-ANLLRQDGFGYVHRGVLPNGK-------------EGEREFQAEVEIISRVHHKHLVSLVGYYTA--GSQRMLVY  162 (243)
Q Consensus        99 ~~~~~-~~~lg~G~~g~V~~~~~~~~~-------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~--~~~~~lv~  162 (243)
                      +.|.. .++||+|+||.||+|+++...             .....+.+|+.+|++++|+||+++++++..  ...+||||
T Consensus        20 ~~y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~lv~   99 (405)
T 3rgf_A           20 DLFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGISMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLF   99 (405)
T ss_dssp             HHEECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSSSCCHHHHHHHHHHHHCCCTTBCCCCEEEEETTTTEEEEEE
T ss_pred             hhhhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCCCCHHHHHHHHHHHhcCCCCeeeEeeEEecCCCCeEEEEE
Confidence            34554 568999999999999866321             134578899999999999999999999964  67899999


Q ss_pred             eccCCCCHHHHhccC-------CCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEE----CCCCcEEEeccCC
Q 039406          163 EFVLNNTLVFHLHGK-------GQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILL----DFKFEAKVADFGL  223 (243)
Q Consensus       163 e~~~~g~L~~~l~~~-------~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl----~~~~~~kl~DFG~  223 (243)
                      ||+.+ +|.+++...       ....+++..++.++.||+.||.|||.        |++||||    +.++.+||+|||+
T Consensus       100 e~~~~-~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~  178 (405)
T 3rgf_A          100 DYAEH-DLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGF  178 (405)
T ss_dssp             ECCSE-EHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECCSSTTTTCEEECCTTC
T ss_pred             eCCCC-CHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHhCCEeCCCcCHHHeEEecCCCCCCcEEEEECCC
Confidence            99965 887777521       11248999999999999999999986        5689999    6778999999999


Q ss_pred             ceecCC
Q 039406          224 AKIASD  229 (243)
Q Consensus       224 a~~~~~  229 (243)
                      |+.+..
T Consensus       179 a~~~~~  184 (405)
T 3rgf_A          179 ARLFNS  184 (405)
T ss_dssp             CC----
T ss_pred             ceecCC
Confidence            998754

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=99.88  E-value=1.1e-22  Score=168.16  Aligned_cols=131  Identities=24%  Similarity=0.338  Sum_probs=108.6

Q ss_pred             CCCCccceeeecCceEEEEEEecCC-------------------chhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNG-------------------KEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRM  159 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~-------------------~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~  159 (243)
                      ++|.+.+.||+|+||.||+|.+...                   ....+.+.+|+.+|++++|+||+++++++...+ .+
T Consensus        18 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-~~   96 (291)
T 1u46_A           18 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPP-MK   96 (291)
T ss_dssp             GGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS-CE
T ss_pred             hHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccCC-ce
Confidence            6799999999999999999975321                   123567889999999999999999999988755 89


Q ss_pred             EEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCC
Q 039406          160 LVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVN  231 (243)
Q Consensus       160 lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~  231 (243)
                      +||||+.+++|.+++..... .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++.+....
T Consensus        97 ~v~e~~~~~~L~~~l~~~~~-~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~  175 (291)
T 1u46_A           97 MVTELAPLGSLLDRLRKHQG-HFLLGTLSRYAVQVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQND  175 (291)
T ss_dssp             EEEECCTTCBHHHHHHHHGG-GSCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEEEETTEEEECCCTTCEECCC-C
T ss_pred             eeEecccCCCHHHHHHhccC-CcCHHHHHHHHHHHHHHHHHHHhCCcccCCCchheEEEcCCCCEEEccccccccccccc
Confidence            99999999999999875432 48999999999999999999987        4689999999999999999999876543

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=99.88  E-value=2.8e-22  Score=167.56  Aligned_cols=128  Identities=23%  Similarity=0.320  Sum_probs=103.8

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCc-------------hhHHHHHHHHHHHHhcCCCccceEEEEEE-----------
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGK-------------EGEREFQAEVEIISRVHHKHLVSLVGYYT-----------  153 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~-------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~-----------  153 (243)
                      .++|.+.+.||+|+||.||+|....+.             ...+.+.+|+.+|++++|+||+++++++.           
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~   89 (320)
T 2i6l_A           10 GSRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVG   89 (320)
T ss_dssp             TTTEEEEEECC-----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC---
T ss_pred             CCceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHHhcCCCCeeEEEEeccccccccccccc
Confidence            378999999999999999999876532             24577899999999999999999999873           


Q ss_pred             ---eCCeeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEEC-CCCcEEEecc
Q 039406          154 ---AGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLD-FKFEAKVADF  221 (243)
Q Consensus       154 ---~~~~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~-~~~~~kl~DF  221 (243)
                         ..+..|+||||+. |+|.+++...   .+++..++.++.|++.||.|||.        +++|||++ .++.+||+||
T Consensus        90 ~~~~~~~~~lv~e~~~-~~L~~~~~~~---~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~kl~Df  165 (320)
T 2i6l_A           90 SLTELNSVYIVQEYME-TDLANVLEQG---PLLEEHARLFMYQLLRGLKYIHSANVLHRDLKPANLFINTEDLVLKIGDF  165 (320)
T ss_dssp             -CCSCSEEEEEEECCS-EEHHHHHTTC---CCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEEETTTTEEEECCC
T ss_pred             cccccCceeEEeeccC-CCHHHHhhcC---CccHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCeEEEccC
Confidence               4467999999997 5999998643   48999999999999999999986        46899997 5679999999


Q ss_pred             CCceecCC
Q 039406          222 GLAKIASD  229 (243)
Q Consensus       222 G~a~~~~~  229 (243)
                      |+++....
T Consensus       166 g~~~~~~~  173 (320)
T 2i6l_A          166 GLARIMDP  173 (320)
T ss_dssp             TTCBCC--
T ss_pred             ccccccCC
Confidence            99997653

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=99.88  E-value=4.6e-22  Score=167.47  Aligned_cols=132  Identities=18%  Similarity=0.293  Sum_probs=112.7

Q ss_pred             hCCCCccceeeecCceEEEEEEecC-Cc------------hhHHHHHHHHHHHHhcCCC------ccceEEEEEEeCCee
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPN-GK------------EGEREFQAEVEIISRVHHK------HLVSLVGYYTAGSQR  158 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~-~~------------~~~~~~~~E~~~l~~l~hp------~iv~~~~~~~~~~~~  158 (243)
                      .++|.+.+.||+|+||.||+|.+.. +.            ...+.+.+|+.+|+.++|+      +|+++++++...+.+
T Consensus        13 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~~~~   92 (339)
T 1z57_A           13 SARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVDRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGHI   92 (339)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEETTEE
T ss_pred             cCceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecCCchhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccCCcE
Confidence            3689999999999999999998632 21            2356788999999988765      499999999999999


Q ss_pred             EEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECC------------------
Q 039406          159 MLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDF------------------  212 (243)
Q Consensus       159 ~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~------------------  212 (243)
                      |+||||+ +++|.+++.......+++..++.++.|++.||.|||.        +++|||++.                  
T Consensus        93 ~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~~~~~~~~~~~~  171 (339)
T 1z57_A           93 CIVFELL-GLSTYDFIKENGFLPFRLDHIRKMAYQICKSVNFLHSNKLTHTDLKPENILFVQSDYTEAYNPKIKRDERTL  171 (339)
T ss_dssp             EEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESCCCEEEEEC----CEEEEE
T ss_pred             EEEEcCC-CCCHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHCCCcCCCCCHHHEEEeccccccccCCccccccccc
Confidence            9999999 8899999987665568999999999999999999986        568999987                  


Q ss_pred             -CCcEEEeccCCceecCCC
Q 039406          213 -KFEAKVADFGLAKIASDV  230 (243)
Q Consensus       213 -~~~~kl~DFG~a~~~~~~  230 (243)
                       ++.+||+|||+++.....
T Consensus       172 ~~~~~kl~Dfg~~~~~~~~  190 (339)
T 1z57_A          172 INPDIKVVDFGSATYDDEH  190 (339)
T ss_dssp             SCCCEEECCCSSCEETTSC
T ss_pred             cCCCceEeeCcccccCccc
Confidence             668999999999886543

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=99.88  E-value=2.6e-22  Score=168.56  Aligned_cols=132  Identities=27%  Similarity=0.329  Sum_probs=110.4

Q ss_pred             HhCCCCccceeeecCceEEEEEEec-CCch---------------hHHHHHHHHHHHHhc---CCCccceEEEEEE----
Q 039406           97 ATDGFSDANLLRQDGFGYVHRGVLP-NGKE---------------GEREFQAEVEIISRV---HHKHLVSLVGYYT----  153 (243)
Q Consensus        97 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~---------------~~~~~~~E~~~l~~l---~hp~iv~~~~~~~----  153 (243)
                      ..++|.+.+.||+|+||.||+|++. .+.+               ....+.+|+.+++.+   +|+||+++++++.    
T Consensus         9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~   88 (326)
T 1blx_A            9 ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRT   88 (326)
T ss_dssp             GGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEEC
T ss_pred             chhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeeccc
Confidence            3478999999999999999999874 2211               123566788777766   8999999999987    


Q ss_pred             -eCCeeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCc
Q 039406          154 -AGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLA  224 (243)
Q Consensus       154 -~~~~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a  224 (243)
                       ....+++||||+. |+|.+++.......+++..++.++.|++.||.|||.        +++|||++.++.+||+|||++
T Consensus        89 ~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~gi~H~dlkp~Nili~~~~~~kl~Dfg~~  167 (326)
T 1blx_A           89 DRETKLTLVFEHVD-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLA  167 (326)
T ss_dssp             SSEEEEEEEEECCS-CBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECSCCSC
T ss_pred             CCCceEEEEEecCC-CCHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCHHHeEEcCCCCEEEecCccc
Confidence             4567999999997 599999877655568999999999999999999986        458999999999999999999


Q ss_pred             eecCC
Q 039406          225 KIASD  229 (243)
Q Consensus       225 ~~~~~  229 (243)
                      +....
T Consensus       168 ~~~~~  172 (326)
T 1blx_A          168 RIYSF  172 (326)
T ss_dssp             CCCCG
T ss_pred             ccccC
Confidence            87653

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=99.87  E-value=5.1e-22  Score=168.18  Aligned_cols=132  Identities=18%  Similarity=0.251  Sum_probs=105.4

Q ss_pred             hCCCCccc-eeeecCceEEEEEEecCCch--------hHHHHHHHH-HHHHhcCCCccceEEEEEEe----CCeeEEEEe
Q 039406           98 TDGFSDAN-LLRQDGFGYVHRGVLPNGKE--------GEREFQAEV-EIISRVHHKHLVSLVGYYTA----GSQRMLVYE  163 (243)
Q Consensus        98 ~~~~~~~~-~lg~G~~g~V~~~~~~~~~~--------~~~~~~~E~-~~l~~l~hp~iv~~~~~~~~----~~~~~lv~e  163 (243)
                      .++|.+.+ +||+|+||.||+|+++.+.+        ......+|+ ..++.++|+||+++++++..    ...+|+|||
T Consensus        27 ~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~e  106 (336)
T 3fhr_A           27 TDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDSPKARQEVDHHWQASGGPHIVCILDVYENMHHGKRCLLIIME  106 (336)
T ss_dssp             GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESSHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEEE
T ss_pred             cceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCcHHHHHHHHHHHHhcCCCChHHHHHHHhhccCCCceEEEEEe
Confidence            47888854 69999999999998875432        112333444 34567799999999999876    456899999


Q ss_pred             ccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECC---CCcEEEeccCCceecCC
Q 039406          164 FVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDF---KFEAKVADFGLAKIASD  229 (243)
Q Consensus       164 ~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~---~~~~kl~DFG~a~~~~~  229 (243)
                      ||++|+|.+++.......+++..++.++.|++.||.|||.        +++|||++.   ++.+||+|||+++....
T Consensus       107 ~~~gg~L~~~l~~~~~~~l~~~~~~~i~~ql~~~l~~LH~~~ivH~dlkp~NIll~~~~~~~~~kl~Dfg~~~~~~~  183 (336)
T 3fhr_A          107 CMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLHSHNIAHRDVKPENLLYTSKEKDAVLKLTDFGFAKETTQ  183 (336)
T ss_dssp             CCTTEEHHHHHHTC-CCCCBHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCSSTTCCEEECCCTTCEEC--
T ss_pred             ccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEEecCCCceEEEeccccceeccc
Confidence            9999999999987665569999999999999999999986        468999976   45699999999987654

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=99.87  E-value=4.9e-22  Score=176.05  Aligned_cols=132  Identities=17%  Similarity=0.218  Sum_probs=111.0

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCch-----------hHHHHHHHHHHHHhcCC-CccceEEEEEEeCCeeEEEEecc
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGKE-----------GEREFQAEVEIISRVHH-KHLVSLVGYYTAGSQRMLVYEFV  165 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~-----------~~~~~~~E~~~l~~l~h-p~iv~~~~~~~~~~~~~lv~e~~  165 (243)
                      .++|.+.++||+|+||.||+|++..+.+           ....+.+|+++|+.|+| ++|..+..++...+..||||||+
T Consensus         6 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~lvme~~   85 (483)
T 3sv0_A            6 GNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVLVMDLL   85 (483)
T ss_dssp             TTTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCSSCCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEEEEECC
T ss_pred             CCcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEeccccccHHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEEEEECC
Confidence            4789999999999999999998654322           23457899999999986 56666777778888999999999


Q ss_pred             CCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEE---CCCCcEEEeccCCceecCCCC
Q 039406          166 LNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILL---DFKFEAKVADFGLAKIASDVN  231 (243)
Q Consensus       166 ~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl---~~~~~~kl~DFG~a~~~~~~~  231 (243)
                       +++|.+++..... .+++..++.|+.||+.||.|||.        |++||||   +.++.+||+|||+|+.+....
T Consensus        86 -g~sL~~ll~~~~~-~l~~~~~~~i~~qi~~aL~yLH~~gIvHrDIKP~NILl~~~~~~~~vkL~DFGla~~~~~~~  160 (483)
T 3sv0_A           86 -GPSLEDLFNFCSR-KLSLKTVLMLADQMINRVEFVHSKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDTS  160 (483)
T ss_dssp             -CCBHHHHHHHTTT-CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECCGGGTTCEEECCCTTCEECBCTT
T ss_pred             -CCCHHHHHHhhcC-CCCHHHHHHHHHHHHHHHHHHHHCCEeecccCcceEEEecCCCCCeEEEEeCCcceeccCCc
Confidence             8999999975433 59999999999999999999976        5689999   578999999999999876543

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=99.87  E-value=4e-22  Score=165.01  Aligned_cols=133  Identities=17%  Similarity=0.211  Sum_probs=108.2

Q ss_pred             HhCCCCccceeeecCceEEEEEEecCCch-----------hHHHHHHHHHHHHhcCCCccceEEEE-EEeCCeeEEEEec
Q 039406           97 ATDGFSDANLLRQDGFGYVHRGVLPNGKE-----------GEREFQAEVEIISRVHHKHLVSLVGY-YTAGSQRMLVYEF  164 (243)
Q Consensus        97 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~-----------~~~~~~~E~~~l~~l~hp~iv~~~~~-~~~~~~~~lv~e~  164 (243)
                      ..++|.+.+.||+|+||.||+|++..+.+           ....+.+|+.+++.++|++++..+.+ +...+..++||||
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e~   86 (296)
T 4hgt_A            7 VGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMEL   86 (296)
T ss_dssp             ----CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC---CCCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEEC
T ss_pred             cCCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeecccccchHHHHHHHHHHHhcCCCCCCeeeeecCCCCceEEEEEc
Confidence            45789999999999999999998654432           23457889999999998877766555 4677889999999


Q ss_pred             cCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEE---CCCCcEEEeccCCceecCCCC
Q 039406          165 VLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILL---DFKFEAKVADFGLAKIASDVN  231 (243)
Q Consensus       165 ~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl---~~~~~~kl~DFG~a~~~~~~~  231 (243)
                      + +++|.+++..... .+++..++.++.|++.||.|||.        +++|||+   +.++.+||+|||+++.+....
T Consensus        87 ~-~~~L~~~~~~~~~-~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a~~~~~~~  162 (296)
T 4hgt_A           87 L-GPSLEDLFNFCSR-KFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDAR  162 (296)
T ss_dssp             C-CCBHHHHHHHTTS-CCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECCGGGTTCEEECCCTTCEECBCTT
T ss_pred             c-CCCHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeeeeccCCCCeEEEecCccceeccCcc
Confidence            9 8999999875433 49999999999999999999986        5689999   788999999999999876543

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=99.87  E-value=4.4e-23  Score=172.79  Aligned_cols=129  Identities=22%  Similarity=0.340  Sum_probs=109.3

Q ss_pred             hCCCCccceeeecCceEEEEEEecCC------------chhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEecc
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNG------------KEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFV  165 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~------------~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~  165 (243)
                      .++|.+.+.||+|+||.||+|.+...            ....+.+.+|+.++++++|+||+++++++.+.+.+++||||+
T Consensus        32 ~~~~~~~~~lg~G~~g~V~~~~~~~~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~iv~e~~  111 (319)
T 2y4i_B           32 FEQLEIGELIGKGRFGQVYHGRWHGEVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPPHLAIITSLC  111 (319)
T ss_dssp             CSCEECCCBCCCSSSSEEEEEEESSSEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEECSSCEEEECBCC
T ss_pred             HHHeEEeeEeccCCceEEEEEEEcCeEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCceEEEeecc
Confidence            47899999999999999999976432            123456778999999999999999999999999999999999


Q ss_pred             CCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          166 LNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       166 ~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      ++++|.+++...+. .+++..++.++.|++.||.|||.        +++|||++ ++.+||+|||+++...
T Consensus       112 ~~~~L~~~l~~~~~-~~~~~~~~~i~~qi~~al~~lH~~~i~H~dlkp~NIl~~-~~~~~l~Dfg~~~~~~  180 (319)
T 2y4i_B          112 KGRTLYSVVRDAKI-VLDVNKTRQIAQEIVKGMGYLHAKGILHKDLKSKNVFYD-NGKVVITDFGLFSISG  180 (319)
T ss_dssp             CSEEHHHHTTSSCC-CCCSHHHHHHHHHHHHHHHHHHHTTCCCCCCCSTTEEEC---CCEECCCSCCC---
T ss_pred             cCCcHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHHhCCccccCCChhhEEEe-CCCEEEeecCCccccc
Confidence            99999999976543 58899999999999999999986        56899998 6899999999988653

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=99.87  E-value=3.7e-22  Score=168.00  Aligned_cols=131  Identities=21%  Similarity=0.300  Sum_probs=109.7

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc-------------hhHHHHHHHHHHHHhcC-CCccceEEEEEE--------eCC
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK-------------EGEREFQAEVEIISRVH-HKHLVSLVGYYT--------AGS  156 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~-------------~~~~~~~~E~~~l~~l~-hp~iv~~~~~~~--------~~~  156 (243)
                      .+|.+.+.||+|+||.||+|++..+.             ...+.+.+|+.+|+++. |+||+++++++.        ...
T Consensus        28 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~~  107 (337)
T 3ll6_A           28 LRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTGQA  107 (337)
T ss_dssp             EEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTSSE
T ss_pred             ceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHHHhccCCChhhccccccccccccccCCc
Confidence            57999999999999999999875432             24567889999999996 999999999984        334


Q ss_pred             eeEEEEeccCCCCHHHHhccC-CCCCCCHHHHHHHHHHHHHhhhHhhc----------CCCcEEECCCCcEEEeccCCce
Q 039406          157 QRMLVYEFVLNNTLVFHLHGK-GQPTMDWPTRIKIALGSAKGLAYLHD----------DLANILLDFKFEAKVADFGLAK  225 (243)
Q Consensus       157 ~~~lv~e~~~~g~L~~~l~~~-~~~~l~~~~~~~i~~~i~~~l~~lH~----------~~~NiLl~~~~~~kl~DFG~a~  225 (243)
                      .+++||||+. |+|.+++... ....+++..++.++.|++.||.|||.          +++|||++.++.+||+|||+++
T Consensus       108 ~~~lv~e~~~-g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~  186 (337)
T 3ll6_A          108 EFLLLTELCK-GQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMHRQKPPIIHRDLKVENLLLSNQGTIKLCDFGSAT  186 (337)
T ss_dssp             EEEEEEECCS-EEHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHTSSSCCBCCCCCGGGCEECTTSCEEBCCCTTCB
T ss_pred             eEEEEEEecC-CCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhCCCCEEEccCCcccEEECCCCCEEEecCccce
Confidence            5899999996 6998887641 22358999999999999999999986          3489999999999999999999


Q ss_pred             ecCCC
Q 039406          226 IASDV  230 (243)
Q Consensus       226 ~~~~~  230 (243)
                      .+...
T Consensus       187 ~~~~~  191 (337)
T 3ll6_A          187 TISHY  191 (337)
T ss_dssp             CCSSC
T ss_pred             ecccc
Confidence            87543

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=99.87  E-value=4.2e-22  Score=171.45  Aligned_cols=116  Identities=22%  Similarity=0.284  Sum_probs=96.2

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCc------------hhHHHHHHHHHHHHhcC--------CCccceEEEEEE----
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGK------------EGEREFQAEVEIISRVH--------HKHLVSLVGYYT----  153 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~------------~~~~~~~~E~~~l~~l~--------hp~iv~~~~~~~----  153 (243)
                      .++|.+.+.||+|+||.||+|+...+.            ...+.+.+|+.+|+.++        |+||+++++++.    
T Consensus        36 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~~  115 (397)
T 1wak_A           36 NGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSAEHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISGV  115 (397)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEEET
T ss_pred             CCeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecCCcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeecCC
Confidence            378999999999999999999866543            24567889999999985        788999999987    


Q ss_pred             eCCeeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc---------CCCcEEECCCC
Q 039406          154 AGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD---------DLANILLDFKF  214 (243)
Q Consensus       154 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~---------~~~NiLl~~~~  214 (243)
                      ....+||||||+ +++|.+++.......+++..++.++.||+.||.|||.         ||+||||+.++
T Consensus       116 ~~~~~~lv~e~~-~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~givHrDikp~NIll~~~~  184 (397)
T 1wak_A          116 NGTHICMVFEVL-GHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLHTKCRIIHTDIKPENILLSVNE  184 (397)
T ss_dssp             TEEEEEEEECCC-CCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSGGGEEECCCH
T ss_pred             CCceEEEEEecc-CccHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHeeEeccc
Confidence            456799999999 5577666655544469999999999999999999986         35899999775

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=99.87  E-value=4e-22  Score=169.67  Aligned_cols=127  Identities=20%  Similarity=0.294  Sum_probs=107.6

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCc---------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCe-----
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGK---------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQ-----  157 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~---------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~-----  157 (243)
                      .++|...+.||+|+||.||+|++..+.               ...+.+.+|+.+|+.++|+||+++++++...+.     
T Consensus        23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~  102 (353)
T 3coi_A           23 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY  102 (353)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred             CceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEecccccccce
Confidence            367999999999999999999865432               135678899999999999999999999987654     


Q ss_pred             -eEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          158 -RMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       158 -~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                       +|+||||+. ++|.+++..    .+++..++.++.|++.||.|||.        +++|||++.++.+||+|||+++...
T Consensus       103 ~~~lv~e~~~-~~l~~~~~~----~~~~~~~~~i~~qi~~al~~LH~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~  177 (353)
T 3coi_A          103 DFYLVMPFMQ-TDLQKIMGL----KFSEEKIQYLVYQMLKGLKYIHSAGVVHRDLKPGNLAVNEDCELKILDFGLARHAD  177 (353)
T ss_dssp             CCEEEEECCS-EEGGGTTTS----CCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCCGGGEEECTTCCEEECSTTCTTC--
T ss_pred             eEEEEecccc-CCHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEeECCCCcEEEeecccccCCC
Confidence             499999997 588887742    38999999999999999999986        4689999999999999999998764


Q ss_pred             C
Q 039406          229 D  229 (243)
Q Consensus       229 ~  229 (243)
                      .
T Consensus       178 ~  178 (353)
T 3coi_A          178 A  178 (353)
T ss_dssp             -
T ss_pred             C
Confidence            3

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=99.87  E-value=1.3e-21  Score=161.96  Aligned_cols=132  Identities=17%  Similarity=0.211  Sum_probs=110.2

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCch-----------hHHHHHHHHHHHHhcCCCccceEEEE-EEeCCeeEEEEecc
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGKE-----------GEREFQAEVEIISRVHHKHLVSLVGY-YTAGSQRMLVYEFV  165 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~-----------~~~~~~~E~~~l~~l~hp~iv~~~~~-~~~~~~~~lv~e~~  165 (243)
                      .++|.+.+.||+|+||.||+|+...+.+           ....+.+|+.+++.++|++++..+.+ +...+..++||||+
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e~~   87 (296)
T 3uzp_A            8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMELL   87 (296)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCSSCCHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEECC
T ss_pred             ccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcchhHHHHHHHHHHHhhcCCCCCccccccCCCCceEEEEEec
Confidence            4789999999999999999998654322           33568899999999998886665554 46778899999999


Q ss_pred             CCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEEC---CCCcEEEeccCCceecCCCC
Q 039406          166 LNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLD---FKFEAKVADFGLAKIASDVN  231 (243)
Q Consensus       166 ~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~---~~~~~kl~DFG~a~~~~~~~  231 (243)
                       +++|.+++..... .+++..++.++.|++.||.|||.        +++|||++   .++.+||+|||+++.+....
T Consensus        88 -~~~L~~~~~~~~~-~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~  162 (296)
T 3uzp_A           88 -GPSLEDLFNFCSR-KFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDAR  162 (296)
T ss_dssp             -CCBHHHHHHHTTT-CCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECCGGGTTCEEECCCTTCEECBCTT
T ss_pred             -CCCHHHHHHhhcc-CCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHeEEecCCCCCeEEEeeCCCcccccccc
Confidence             8999999974433 59999999999999999999986        46899994   78899999999999876543

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=99.86  E-value=1.8e-22  Score=169.72  Aligned_cols=135  Identities=19%  Similarity=0.272  Sum_probs=114.1

Q ss_pred             HHHHhCCCCccceeeecCceEEEEEEecCCch-------------------hHHHHHHHHHHHHhcC--CCccceEEEEE
Q 039406           94 LARATDGFSDANLLRQDGFGYVHRGVLPNGKE-------------------GEREFQAEVEIISRVH--HKHLVSLVGYY  152 (243)
Q Consensus        94 ~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~-------------------~~~~~~~E~~~l~~l~--hp~iv~~~~~~  152 (243)
                      .....++|.+.+.||+|+||.||+|+...+.+                   ..+.+.+|+.+|++++  |+||+++++++
T Consensus        38 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~  117 (320)
T 3a99_A           38 KEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWF  117 (320)
T ss_dssp             --CCTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEE
T ss_pred             cCCccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEE
Confidence            34455789999999999999999998654421                   1245678999999996  59999999999


Q ss_pred             EeCCeeEEEEeccCC-CCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEEC-CCCcEEEeccC
Q 039406          153 TAGSQRMLVYEFVLN-NTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLD-FKFEAKVADFG  222 (243)
Q Consensus       153 ~~~~~~~lv~e~~~~-g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~-~~~~~kl~DFG  222 (243)
                      ...+..++|||++.+ ++|.+++...+  .+++..++.++.|++.||.|||.        +++|||++ +++.+||+|||
T Consensus       118 ~~~~~~~lv~e~~~~~~~L~~~l~~~~--~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~~kL~Dfg  195 (320)
T 3a99_A          118 ERPDSFVLILERPEPVQDLFDFITERG--ALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFG  195 (320)
T ss_dssp             ECSSEEEEEEECCSSEEEHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTTEEEECCCT
T ss_pred             ecCCcEEEEEEcCCCCccHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHHCCcEeCCCCHHHEEEeCCCCCEEEeeCc
Confidence            999999999999976 89999987644  48999999999999999999976        45899998 77999999999


Q ss_pred             CceecCCC
Q 039406          223 LAKIASDV  230 (243)
Q Consensus       223 ~a~~~~~~  230 (243)
                      +++.+...
T Consensus       196 ~~~~~~~~  203 (320)
T 3a99_A          196 SGALLKDT  203 (320)
T ss_dssp             TCEECCSS
T ss_pred             cccccccc
Confidence            99987643

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=99.86  E-value=1.6e-21  Score=164.02  Aligned_cols=131  Identities=18%  Similarity=0.239  Sum_probs=105.5

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch--------------hHHHHHHHHH-HHHhcCCCccceEEEEEEeCCeeEEEEe
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE--------------GEREFQAEVE-IISRVHHKHLVSLVGYYTAGSQRMLVYE  163 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~--------------~~~~~~~E~~-~l~~l~hp~iv~~~~~~~~~~~~~lv~e  163 (243)
                      ++|...+.||+|+||.||+|....+.+              ....+.+|+. +++.++|+||+++++++...+..|+|||
T Consensus        22 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~~~lv~e  101 (327)
T 3aln_A           22 EDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWICME  101 (327)
T ss_dssp             CSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred             HHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCceEEEEe
Confidence            789999999999999999998764321              3345566665 6777899999999999999999999999


Q ss_pred             ccCCCCHHHHhcc---CCCCCCCHHHHHHHHHHHHHhhhHhhc---------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          164 FVLNNTLVFHLHG---KGQPTMDWPTRIKIALGSAKGLAYLHD---------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       164 ~~~~g~L~~~l~~---~~~~~l~~~~~~~i~~~i~~~l~~lH~---------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      |+.+ +|.+++..   .....+++..+..++.+++.||.|||.         +++|||++.++.+||+|||+++.+...
T Consensus       102 ~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~~  179 (327)
T 3aln_A          102 LMST-SFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKENLKIIHRDIKPSNILLDRSGNIKLCDFGISGQLVDS  179 (327)
T ss_dssp             CCSE-EHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHSCCCSCCCGGGEEEETTTEEEECCCSSSCC----
T ss_pred             ecCC-ChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHhccCCEeECCCCHHHEEEcCCCCEEEccCCCceecccc
Confidence            9976 78777652   223358999999999999999999976         358999999999999999999877543

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=99.86  E-value=1.8e-21  Score=164.87  Aligned_cols=132  Identities=17%  Similarity=0.278  Sum_probs=111.4

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCc-------------hhHHHHHHHHHHHHhcCCCc------cceEEEEEEeCCee
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGK-------------EGEREFQAEVEIISRVHHKH------LVSLVGYYTAGSQR  158 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~-------------~~~~~~~~E~~~l~~l~hp~------iv~~~~~~~~~~~~  158 (243)
                      .++|.+.+.||+|+||.||+|......             ...+.+.+|+.+|++++|++      ++.+++++...+.+
T Consensus        18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~   97 (355)
T 2eu9_A           18 QERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVGKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGHM   97 (355)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEETTEE
T ss_pred             cccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEcccccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeCCeE
Confidence            378999999999999999999875432             23567888999999987665      99999999999999


Q ss_pred             EEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEE-------------------C
Q 039406          159 MLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILL-------------------D  211 (243)
Q Consensus       159 ~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl-------------------~  211 (243)
                      ||||||+ +++|.+++.......+++..++.++.|++.||.|||.        +++|||+                   +
T Consensus        98 ~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~lH~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~~~~~~~  176 (355)
T 2eu9_A           98 CIAFELL-GKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLHENQLTHTDLKPENILFVNSEFETLYNEHKSCEEKSV  176 (355)
T ss_dssp             EEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEESCCCEEEEECCC-CCCEEEE
T ss_pred             EEEEecc-CCChHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEeccccccccccccccccccc
Confidence            9999999 6677777766554469999999999999999999987        5689999                   5


Q ss_pred             CCCcEEEeccCCceecCCC
Q 039406          212 FKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       212 ~~~~~kl~DFG~a~~~~~~  230 (243)
                      .++.+||+|||+++.....
T Consensus       177 ~~~~~kl~Dfg~~~~~~~~  195 (355)
T 2eu9_A          177 KNTSIRVADFGSATFDHEH  195 (355)
T ss_dssp             SCCCEEECCCTTCEETTSC
T ss_pred             CCCcEEEeecCcccccccc
Confidence            6789999999999876543

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=99.86  E-value=9.1e-22  Score=164.62  Aligned_cols=130  Identities=18%  Similarity=0.175  Sum_probs=109.5

Q ss_pred             HhCCCCccceeeecCceEEEEEEecCCc--------------hhHHHHHHHHHHHHhcC--CCccceEEEEEEeCCeeEE
Q 039406           97 ATDGFSDANLLRQDGFGYVHRGVLPNGK--------------EGEREFQAEVEIISRVH--HKHLVSLVGYYTAGSQRML  160 (243)
Q Consensus        97 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~--------------~~~~~~~~E~~~l~~l~--hp~iv~~~~~~~~~~~~~l  160 (243)
                      ..++|.+.+.||+|+||.||++....+.              ...+.+.+|+.+|++++  |+||+++++++...+.+|+
T Consensus        26 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~l  105 (313)
T 3cek_A           26 KGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYM  105 (313)
T ss_dssp             TTEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEECSSEEEE
T ss_pred             ccceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEeecCCEEEE
Confidence            3467999999999999999999765432              24577899999999997  5999999999999999999


Q ss_pred             EEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          161 VYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       161 v~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      ||| +.+++|.+++....  .+++..++.++.|++.||.|||.        +++|||++ ++.+||+|||+++.+...
T Consensus       106 v~e-~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIl~~-~~~~kL~Dfg~~~~~~~~  179 (313)
T 3cek_A          106 VME-CGNIDLNSWLKKKK--SIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPD  179 (313)
T ss_dssp             EEC-CCSEEHHHHHHHCS--SCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEE-TTEEEECCCSSSCC----
T ss_pred             EEe-cCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCceecCCCcccEEEE-CCeEEEeeccccccccCc
Confidence            999 45789999997654  48999999999999999999987        45899996 589999999999987543

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=99.85  E-value=6.1e-21  Score=164.18  Aligned_cols=133  Identities=22%  Similarity=0.234  Sum_probs=111.7

Q ss_pred             HHhCCCCccceeeecCceEEEEEEecCCch------------hHHHHHHHHHHHHhcC-CC-----ccceEEEEEEeCCe
Q 039406           96 RATDGFSDANLLRQDGFGYVHRGVLPNGKE------------GEREFQAEVEIISRVH-HK-----HLVSLVGYYTAGSQ  157 (243)
Q Consensus        96 ~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~------------~~~~~~~E~~~l~~l~-hp-----~iv~~~~~~~~~~~  157 (243)
                      ...++|.+.+.||+|+||.||+|+...+.+            ....+.+|+.+++.++ |+     +|+++++++...+.
T Consensus        51 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~  130 (382)
T 2vx3_A           51 KWMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKKAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRNH  130 (382)
T ss_dssp             EETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEETTE
T ss_pred             EeeeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEeccHHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccCCc
Confidence            345789999999999999999998765432            3466778898888885 54     49999999999999


Q ss_pred             eEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc----------CCCcEEEC--CCCcEEEeccCCce
Q 039406          158 RMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD----------DLANILLD--FKFEAKVADFGLAK  225 (243)
Q Consensus       158 ~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~----------~~~NiLl~--~~~~~kl~DFG~a~  225 (243)
                      +||||||+. ++|.+++.......+++..++.++.|++.||.|||.          ||+|||++  .++.+||+|||+|+
T Consensus       131 ~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~~~ivHrDlkp~NIll~~~~~~~~kL~DFG~a~  209 (382)
T 2vx3_A          131 LCLVFEMLS-YNLYDLLRNTNFRGVSLNLTRKFAQQMCTALLFLATPELSIIHCDLKPENILLCNPKRSAIKIVDFGSSC  209 (382)
T ss_dssp             EEEEEECCC-CBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTSTTTCEECCCCSGGGEEESSTTSCCEEECCCTTCE
T ss_pred             eEEEEecCC-CCHHHHHhhcCcCCCCHHHHHHHHHHHHHHHHHhccCCCCEEcCCCCcccEEEecCCCCcEEEEeccCce
Confidence            999999996 599999987654468999999999999999999983          46899995  47889999999999


Q ss_pred             ecCC
Q 039406          226 IASD  229 (243)
Q Consensus       226 ~~~~  229 (243)
                      ....
T Consensus       210 ~~~~  213 (382)
T 2vx3_A          210 QLGQ  213 (382)
T ss_dssp             ETTC
T ss_pred             eccc
Confidence            8754

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=99.85  E-value=2.5e-21  Score=161.87  Aligned_cols=131  Identities=16%  Similarity=0.185  Sum_probs=97.1

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCch---------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEE
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGKE---------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVY  162 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~---------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  162 (243)
                      .++|...+.||+|+||.||+|.+..+.+               ..+.+.++..+++.++|+||+++++++.+.+.+|+||
T Consensus        24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lv~  103 (318)
T 2dyl_A           24 INDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVFIAM  103 (318)
T ss_dssp             GGGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred             hccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEecCCcEEEEE
Confidence            3778999999999999999998764321               1233444556788889999999999999999999999


Q ss_pred             eccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc---------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          163 EFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD---------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       163 e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~---------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      ||+ ++.+..++.... ..+++..++.++.+++.||.|||.         +++|||++.++.+||+|||+++.+...
T Consensus       104 e~~-~~~~~~l~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~  178 (318)
T 2dyl_A          104 ELM-GTCAEKLKKRMQ-GPIPERILGKMTVAIVKALYYLKEKHGVIHRDVKPSNILLDERGQIKLCDFGISGRLVDD  178 (318)
T ss_dssp             CCC-SEEHHHHHHHHT-SCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCGGGEEECTTSCEEECCCTTC------
T ss_pred             ecc-CCcHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHHhhCCEEeCCCCHHHEEECCCCCEEEEECCCchhccCC
Confidence            999 556666554322 258999999999999999999985         348999999999999999999876543

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=99.85  E-value=8.7e-22  Score=179.43  Aligned_cols=132  Identities=21%  Similarity=0.270  Sum_probs=110.3

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc--------------hhHHHHHHHHHHHHhcCCCccceEEEEEEe------CCee
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK--------------EGEREFQAEVEIISRVHHKHLVSLVGYYTA------GSQR  158 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~--------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~------~~~~  158 (243)
                      ++|.+.+.||+|+||.||+|.+..+.              ...+.+.+|+.+|++++||||+++++++..      .+..
T Consensus        14 grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~~~   93 (676)
T 3qa8_A           14 GPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPNDLP   93 (676)
T ss_dssp             ---CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTSSC
T ss_pred             CCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCCeE
Confidence            78999999999999999999765432              245678999999999999999999998765      6778


Q ss_pred             EEEEeccCCCCHHHHhccCCC-CCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCc---EEEeccCCcee
Q 039406          159 MLVYEFVLNNTLVFHLHGKGQ-PTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFE---AKVADFGLAKI  226 (243)
Q Consensus       159 ~lv~e~~~~g~L~~~l~~~~~-~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~---~kl~DFG~a~~  226 (243)
                      |+|||||++|+|.+++..... ..+++..++.++.+++.||.|||.        +++|||++.++.   +||+|||+++.
T Consensus        94 ~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~yLHs~gIVHrDLKP~NILl~~~g~~~~vKL~DFG~a~~  173 (676)
T 3qa8_A           94 LLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHENRIIHRDLKPENIVLQPGPQRLIHKIIDLGYAKE  173 (676)
T ss_dssp             CCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHHHHHTTBCCCCCCSTTEEEECCSSSCEEEECSCCCCCB
T ss_pred             EEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCCHHHeEeecCCCceeEEEcccccccc
Confidence            999999999999999976432 248888999999999999999986        568999987664   99999999998


Q ss_pred             cCCC
Q 039406          227 ASDV  230 (243)
Q Consensus       227 ~~~~  230 (243)
                      +...
T Consensus       174 ~~~~  177 (676)
T 3qa8_A          174 LDQG  177 (676)
T ss_dssp             TTSC
T ss_pred             cccc
Confidence            7544

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.85  E-value=7e-22  Score=177.38  Aligned_cols=117  Identities=14%  Similarity=0.152  Sum_probs=90.2

Q ss_pred             CccceeeecCceEEEEEEecCCc-------------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEE
Q 039406          102 SDANLLRQDGFGYVHRGVLPNGK-------------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVY  162 (243)
Q Consensus       102 ~~~~~lg~G~~g~V~~~~~~~~~-------------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  162 (243)
                      ...+.||+|+||.||+|......                   ...+++.+|+++|++++|+||+++..++...+..||||
T Consensus       339 ~~~~~LG~G~fg~Vy~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lVm  418 (540)
T 3en9_A          339 IPEHLIGKGAEADIKRDSYLDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNKRIMM  418 (540)
T ss_dssp             ---------CCEEEEEEECSSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTTEEEE
T ss_pred             CCCCEEeeCCCEEEEEEEECCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCccEEEE
Confidence            34678999999999988543321                   02456899999999999999996666666778889999


Q ss_pred             eccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          163 EFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       163 e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      |||++++|.+++..          ++.++.|++.+|.|||.        ||+|||++.  ++||+|||+|+.+...
T Consensus       419 E~~~ggsL~~~l~~----------~~~i~~qi~~aL~~LH~~gIiHrDiKp~NILl~~--~~kL~DFGla~~~~~~  482 (540)
T 3en9_A          419 SYINGKLAKDVIED----------NLDIAYKIGEIVGKLHKNDVIHNDLTTSNFIFDK--DLYIIDFGLGKISNLD  482 (540)
T ss_dssp             ECCCSEEHHHHSTT----------CTHHHHHHHHHHHHHHHTTEECTTCCTTSEEESS--SEEECCCTTCEECCCH
T ss_pred             ECCCCCCHHHHHHH----------HHHHHHHHHHHHHHHHHCcCccCCCCHHHEEECC--eEEEEECccCEECCCc
Confidence            99999999999864          45789999999999976        679999998  9999999999998654

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=99.85  E-value=1.2e-21  Score=168.03  Aligned_cols=129  Identities=8%  Similarity=-0.080  Sum_probs=91.5

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc----------------hhHHHHHHHHHHHHhc--CCCccceEE-------EEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK----------------EGEREFQAEVEIISRV--HHKHLVSLV-------GYYT  153 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~----------------~~~~~~~~E~~~l~~l--~hp~iv~~~-------~~~~  153 (243)
                      .+|...+.||+|+||.||+|.+..+.                ...+.+.+|+.+++.|  +||||++++       +++.
T Consensus        62 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~hp~iv~~~~~~~~p~d~~~  141 (371)
T 3q60_A           62 RKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLPSDAVA  141 (371)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC----------CBCCCCEEEE
T ss_pred             eeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcccChhhhhhceeEEeeehhee
Confidence            35888999999999999999866442                1345677785544444  699988755       5554


Q ss_pred             eC-----------------CeeEEEEeccCCCCHHHHhccCCCCCCCHHHH------HHHHHHHHHhhhHhhc-------
Q 039406          154 AG-----------------SQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTR------IKIALGSAKGLAYLHD-------  203 (243)
Q Consensus       154 ~~-----------------~~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~------~~i~~~i~~~l~~lH~-------  203 (243)
                      ..                 ..+|||||||+ ++|.+++...+. .+.+..+      +.++.|++.||.|||.       
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~-~~~~~~~~~~~vk~~i~~qi~~aL~~LH~~~ivHrD  219 (371)
T 3q60_A          142 VQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTLDF-VYVFRGDEGILALHILTAQLIRLAANLQSKGLVHGH  219 (371)
T ss_dssp             ETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHHHH-SCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTEEETT
T ss_pred             cCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHhcc-ccchhhhhhhhhHHHHHHHHHHHHHHHHHCCCccCc
Confidence            43                 33899999998 799999975432 2344444      5677999999999976       


Q ss_pred             -CCCcEEECCCCcEEEeccCCceecCC
Q 039406          204 -DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       204 -~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                       ||+||||+.++.+||+|||+|+....
T Consensus       220 ikp~NIll~~~~~~kL~DFG~a~~~~~  246 (371)
T 3q60_A          220 FTPDNLFIMPDGRLMLGDVSALWKVGT  246 (371)
T ss_dssp             CSGGGEEECTTSCEEECCGGGEEETTC
T ss_pred             CCHHHEEECCCCCEEEEecceeeecCC
Confidence             56899999999999999999998754

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=99.85  E-value=2.9e-21  Score=165.09  Aligned_cols=131  Identities=18%  Similarity=0.237  Sum_probs=110.7

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch------------hHHHHHHHHHHHHhcC-----------CCccceEEEEEEeC
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE------------GEREFQAEVEIISRVH-----------HKHLVSLVGYYTAG  155 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~------------~~~~~~~E~~~l~~l~-----------hp~iv~~~~~~~~~  155 (243)
                      ++|.+.+.||+|+||.||+|+...+.+            ..+.+.+|+.+|++++           |+||+++++++...
T Consensus        19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~~~   98 (373)
T 1q8y_A           19 ARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHK   98 (373)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEEE
T ss_pred             CeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCCccchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhhcc
Confidence            689999999999999999998654422            3567889999999886           89999999998865


Q ss_pred             C----eeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhcC---------CCcEEEC------CCCcE
Q 039406          156 S----QRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHDD---------LANILLD------FKFEA  216 (243)
Q Consensus       156 ~----~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~---------~~NiLl~------~~~~~  216 (243)
                      +    .+++||||+ +++|.+++.......+++..++.++.|++.||.|||.+         ++|||++      ..+.+
T Consensus        99 ~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~~ivH~Dikp~NIll~~~~~~~~~~~~  177 (373)
T 1q8y_A           99 GPNGVHVVMVFEVL-GENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLMEIVDSPENLIQI  177 (373)
T ss_dssp             ETTEEEEEEEECCC-CEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECSCCSGGGEEEEEEETTTTEEEE
T ss_pred             CCCCceEEEEEecC-CCCHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHhcCCEEecCCChHHeEEeccCCCcCcceE
Confidence            4    799999999 88999999875555699999999999999999999863         4899994      44589


Q ss_pred             EEeccCCceecCCC
Q 039406          217 KVADFGLAKIASDV  230 (243)
Q Consensus       217 kl~DFG~a~~~~~~  230 (243)
                      ||+|||+++.....
T Consensus       178 kl~Dfg~a~~~~~~  191 (373)
T 1q8y_A          178 KIADLGNACWYDEH  191 (373)
T ss_dssp             EECCCTTCEETTBC
T ss_pred             EEcccccccccCCC
Confidence            99999999987543

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=99.84  E-value=3.1e-21  Score=168.90  Aligned_cols=131  Identities=18%  Similarity=0.147  Sum_probs=100.1

Q ss_pred             CCCccceeeecCceEEEEEEecCCc---------hhHHHHHHHHHHHHhc-CCCccceEEEEEEeCCeeEEEEeccCCCC
Q 039406          100 GFSDANLLRQDGFGYVHRGVLPNGK---------EGEREFQAEVEIISRV-HHKHLVSLVGYYTAGSQRMLVYEFVLNNT  169 (243)
Q Consensus       100 ~~~~~~~lg~G~~g~V~~~~~~~~~---------~~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~~~lv~e~~~~g~  169 (243)
                      .|...+.||+|+||+||.+....+.         ...+.+.+|+.+|+++ +||||+++++++.+.+.+|||||||. |+
T Consensus        16 ~~~~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv~E~~~-gs   94 (434)
T 2rio_A           16 LVVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLIDFCDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALELCN-LN   94 (434)
T ss_dssp             CEEEEEEEEECSTTCEEEEEESSSSEEEEEEEEGGGHHHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCCS-EE
T ss_pred             eeeccCeEeeCCCeEEEEEEEECCeEEEEEEEcHHHHHHHHHHHHHHHhccCCCCcCeEEEEEecCCeEEEEEecCC-CC
Confidence            3455788999999999765433322         1345678999999987 89999999999999999999999995 59


Q ss_pred             HHHHhccCCCCC-----CCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCC-------------CcEEEeccCC
Q 039406          170 LVFHLHGKGQPT-----MDWPTRIKIALGSAKGLAYLHD--------DLANILLDFK-------------FEAKVADFGL  223 (243)
Q Consensus       170 L~~~l~~~~~~~-----l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~-------------~~~kl~DFG~  223 (243)
                      |.+++.......     ..+..++.++.|++.||.|||.        +|+|||++.+             +.+||+|||+
T Consensus        95 L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDLkp~NILl~~~~~~~~~~~~~~~~~~~kL~DFG~  174 (434)
T 2rio_A           95 LQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHSLKIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGL  174 (434)
T ss_dssp             HHHHHHTC------------CCHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEECCHHHHSCCTTCCCSCEEEECCCTT
T ss_pred             HHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHHHCCccccCCChHhEEEecCcccccccccCCCceEEEEccccc
Confidence            999997654211     1223456799999999999986        5689999653             4899999999


Q ss_pred             ceecCCCC
Q 039406          224 AKIASDVN  231 (243)
Q Consensus       224 a~~~~~~~  231 (243)
                      |+.+....
T Consensus       175 a~~~~~~~  182 (434)
T 2rio_A          175 CKKLDSGQ  182 (434)
T ss_dssp             CEECCC--
T ss_pred             ceecCCCC
Confidence            99886543

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=99.83  E-value=3.8e-21  Score=168.27  Aligned_cols=142  Identities=23%  Similarity=0.240  Sum_probs=103.9

Q ss_pred             CCCCccceeeecCceEEE-EEEecCCch--------hHHHHHHHHHHHHhc-CCCccceEEEEEEeCCeeEEEEeccCCC
Q 039406           99 DGFSDANLLRQDGFGYVH-RGVLPNGKE--------GEREFQAEVEIISRV-HHKHLVSLVGYYTAGSQRMLVYEFVLNN  168 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~-~~~~~~~~~--------~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~~~lv~e~~~~g  168 (243)
                      .+|...++||+|+||.|| ++.......        ....+.+|+.+|+.+ +|||||++++++.+.+..|||||||. |
T Consensus        24 ~~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~E~~~-g  102 (432)
T 3p23_A           24 ISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECFSFADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAIELCA-A  102 (432)
T ss_dssp             EEEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTTTEEECHHHHHHHHHSCCCTTBCCEEEEEEETTEEEEEEECCS-E
T ss_pred             EEEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHHHHHHHHHHHHHHHhccCCCCcCeEEEEEecCCEEEEEEECCC-C
Confidence            468889999999999854 443322211        223357899999999 79999999999999999999999996 5


Q ss_pred             CHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECC-----CCcEEEeccCCceecCCCCc--e
Q 039406          169 TLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDF-----KFEAKVADFGLAKIASDVNT--H  233 (243)
Q Consensus       169 ~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~-----~~~~kl~DFG~a~~~~~~~~--~  233 (243)
                      +|.+++..... .+.+..++.++.|++.||.|||.        |++|||++.     ...+||+|||+|+.+.....  .
T Consensus       103 ~L~~~l~~~~~-~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~~~~~~~~~~  181 (432)
T 3p23_A          103 TLQEYVEQKDF-AHLGLEPITLLQQTTSGLAHLHSLNIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAVGRHSFS  181 (432)
T ss_dssp             EHHHHHHSSSC-CCCSSCHHHHHHHHHHHHHHHHHTTCCCCCCSTTSEEECCCBTTTBCCEEECCTTEEECC--------
T ss_pred             CHHHHHHhcCC-CccchhHHHHHHHHHHHHHHHHHCcCEeCCCCHHHEEEecCCCCCceeEEEecccceeeccCCCccee
Confidence            99999976543 34455667899999999999976        569999953     23688999999998754322  1


Q ss_pred             eeecccccc
Q 039406          234 VSTRVMGTF  242 (243)
Q Consensus       234 ~~~~~~GT~  242 (243)
                      .....+||+
T Consensus       182 ~~~~~~gt~  190 (432)
T 3p23_A          182 RRSGVPGTE  190 (432)
T ss_dssp             ----CCSCT
T ss_pred             eccccCCCc
Confidence            223345665

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.78  E-value=5.5e-19  Score=146.18  Aligned_cols=122  Identities=11%  Similarity=0.061  Sum_probs=94.7

Q ss_pred             HHHhCCCCccceeeecCceEEEEEEecCCch------------------------------hHHHHHHHHHHHHhcCCCc
Q 039406           95 ARATDGFSDANLLRQDGFGYVHRGVLPNGKE------------------------------GEREFQAEVEIISRVHHKH  144 (243)
Q Consensus        95 ~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~------------------------------~~~~~~~E~~~l~~l~hp~  144 (243)
                      ......|.+.+.||+|+||.||+|.+..+..                              ....+.+|+.+|++++  |
T Consensus        86 ~~~~~~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~--~  163 (282)
T 1zar_A           86 VRSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQ--G  163 (282)
T ss_dssp             HHTTSCSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTT--T
T ss_pred             HhCCeEEEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhcc--C
Confidence            3334556677999999999999998732211                              1345889999999999  4


Q ss_pred             cceEEEEEEeCCeeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcE
Q 039406          145 LVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEA  216 (243)
Q Consensus       145 iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~  216 (243)
                       +++++++.. +..|+|||||+|++|.+ +..      .  ....++.|++.||.|||+        +|+|||++ ++.+
T Consensus       164 -~~v~~~~~~-~~~~lvmE~~~g~~L~~-l~~------~--~~~~i~~qi~~~l~~lH~~giiHrDlkp~NILl~-~~~v  231 (282)
T 1zar_A          164 -LAVPKVYAW-EGNAVLMELIDAKELYR-VRV------E--NPDEVLDMILEEVAKFYHRGIVHGDLSQYNVLVS-EEGI  231 (282)
T ss_dssp             -SSSCCEEEE-ETTEEEEECCCCEEGGG-CCC------S--CHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEEE-TTEE
T ss_pred             -CCcCeEEec-cceEEEEEecCCCcHHH-cch------h--hHHHHHHHHHHHHHHHHHCCCEeCCCCHHHEEEE-CCcE
Confidence             666665543 56799999999999988 421      1  244689999999999976        56999999 9999


Q ss_pred             EEeccCCceecCCC
Q 039406          217 KVADFGLAKIASDV  230 (243)
Q Consensus       217 kl~DFG~a~~~~~~  230 (243)
                      ||+|||+|+.....
T Consensus       232 kl~DFG~a~~~~~~  245 (282)
T 1zar_A          232 WIIDFPQSVEVGEE  245 (282)
T ss_dssp             EECCCTTCEETTST
T ss_pred             EEEECCCCeECCCC
Confidence            99999999987544

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=99.74  E-value=1.3e-18  Score=151.27  Aligned_cols=130  Identities=15%  Similarity=0.132  Sum_probs=95.5

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhcCC-Ccc---------ce-----
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRVHH-KHL---------VS-----  147 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l~h-p~i---------v~-----  147 (243)
                      .+|...++||+|+||.||+|++..+.+                ..+.+.+|+.+++.++| .|+         +.     
T Consensus        78 ~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  157 (413)
T 3dzo_A           78 RTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLV  157 (413)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCEEE
T ss_pred             eeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchhhc
Confidence            347778899999999999998664321                35778899999999977 221         11     


Q ss_pred             -------EEEEEEe-----CCeeEEEEeccCCCCHHHHhc-----cCCCCCCCHHHHHHHHHHHHHhhhHhhc-------
Q 039406          148 -------LVGYYTA-----GSQRMLVYEFVLNNTLVFHLH-----GKGQPTMDWPTRIKIALGSAKGLAYLHD-------  203 (243)
Q Consensus       148 -------~~~~~~~-----~~~~~lv~e~~~~g~L~~~l~-----~~~~~~l~~~~~~~i~~~i~~~l~~lH~-------  203 (243)
                             +..++..     ...++++|+++ +++|.+++.     ......+++..++.++.|++.||.|||.       
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~iiHrD  236 (413)
T 3dzo_A          158 KDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYGLVHTY  236 (413)
T ss_dssp             ECCC---------------CCSEEEEEECC-SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHTTEECSC
T ss_pred             ccCCCCccccccCCCccccccceEEEeehh-cCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCC
Confidence                   1111111     23467888877 679998884     2222347788889999999999999976       


Q ss_pred             -CCCcEEECCCCcEEEeccCCceecCC
Q 039406          204 -DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       204 -~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                       |++||||+.++.+||+|||+++....
T Consensus       237 iKp~NILl~~~~~~kL~DFG~a~~~~~  263 (413)
T 3dzo_A          237 LRPVDIVLDQRGGVFLTGFEHLVRDGA  263 (413)
T ss_dssp             CCGGGEEECTTCCEEECCGGGCEETTE
T ss_pred             cccceEEEecCCeEEEEeccceeecCC
Confidence             56899999999999999999987654

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=99.66  E-value=1e-16  Score=130.80  Aligned_cols=119  Identities=16%  Similarity=0.048  Sum_probs=89.5

Q ss_pred             CCccceeeecCceEEEEEEe-cCCch---h-----------------------------------HHHHHHHHHHHHhcC
Q 039406          101 FSDANLLRQDGFGYVHRGVL-PNGKE---G-----------------------------------EREFQAEVEIISRVH  141 (243)
Q Consensus       101 ~~~~~~lg~G~~g~V~~~~~-~~~~~---~-----------------------------------~~~~~~E~~~l~~l~  141 (243)
                      |.+.+.||+|+||.||+|.+ ..+..   .                                   ...+.+|+.+|++++
T Consensus        49 ~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~  128 (258)
T 1zth_A           49 TAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAK  128 (258)
T ss_dssp             EEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHHH
Confidence            56788999999999999987 22211   0                                   125788999999998


Q ss_pred             CCcc--ceEEEEEEeCCeeEEEEeccCC-C----CHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhh-c--------CC
Q 039406          142 HKHL--VSLVGYYTAGSQRMLVYEFVLN-N----TLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLH-D--------DL  205 (243)
Q Consensus       142 hp~i--v~~~~~~~~~~~~~lv~e~~~~-g----~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH-~--------~~  205 (243)
                      |++|  ..++++    +..+|||||+.+ |    .|.++...     .++..+..++.|++.+|.||| .        +|
T Consensus       129 ~~~i~~p~~~~~----~~~~lVmE~~g~~g~~~~~L~~~~~~-----~~~~~~~~i~~qi~~~l~~lH~~~givHrDlkp  199 (258)
T 1zth_A          129 EAGVSVPQPYTY----MKNVLLMEFIGEDELPAPTLVELGRE-----LKELDVEGIFNDVVENVKRLYQEAELVHADLSE  199 (258)
T ss_dssp             HTTCCCCCEEEE----ETTEEEEECCEETTEECCBHHHHGGG-----GGGSCHHHHHHHHHHHHHHHHHTSCEECSSCST
T ss_pred             hCCCCCCeEEEc----CCCEEEEEecCCCCCccccHHHHhhc-----cChHHHHHHHHHHHHHHHHHHHHCCEEeCCCCH
Confidence            8754  444443    357899999942 3    77776532     223456788999999999999 5        57


Q ss_pred             CcEEECCCCcEEEeccCCceecCCC
Q 039406          206 ANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       206 ~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      +|||++.  .++|+|||+|......
T Consensus       200 ~NILl~~--~~~liDFG~a~~~~~~  222 (258)
T 1zth_A          200 YNIMYID--KVYFIDMGQAVTLRHP  222 (258)
T ss_dssp             TSEEESS--SEEECCCTTCEETTST
T ss_pred             HHEEEcC--cEEEEECcccccCCCc
Confidence            9999998  9999999999987544

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=99.34  E-value=2.4e-12  Score=110.21  Aligned_cols=121  Identities=10%  Similarity=-0.012  Sum_probs=83.0

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch----------------------------------hHHHHHHHHHHHHhcCCCc
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE----------------------------------GEREFQAEVEIISRVHHKH  144 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~----------------------------------~~~~~~~E~~~l~~l~hp~  144 (243)
                      .-|.+.+.||.|+||.||+|....+..                                  ......+|...|.++.+.+
T Consensus        95 ~iY~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~g  174 (397)
T 4gyi_A           95 DVYSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEG  174 (397)
T ss_dssp             SCSEEEEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CEEEecCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcC
Confidence            348899999999999999997544321                                  0112245777788775544


Q ss_pred             cceEEEEEEeCCeeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCC--
Q 039406          145 LVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKF--  214 (243)
Q Consensus       145 iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~--  214 (243)
                      +.-..-+...  ..+|||||++|+.|.++..      ..  ....++.|++.+|.|||+        |+.|||+++++  
T Consensus       175 v~vp~p~~~~--~~~LVME~i~G~~L~~l~~------~~--~~~~l~~qll~~l~~lH~~gIVHrDLKp~NILl~~dgd~  244 (397)
T 4gyi_A          175 FPVPEPIAQS--RHTIVMSLVDALPMRQVSS------VP--DPASLYADLIALILRLAKHGLIHGDFNEFNILIREEKDA  244 (397)
T ss_dssp             CSCCCEEEEE--TTEEEEECCSCEEGGGCCC------CS--CHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEEEEEECS
T ss_pred             CCCCeeeecc--CceEEEEecCCccHhhhcc------cH--HHHHHHHHHHHHHHHHHHCCCcCCCCCHHHEEEeCCCCc
Confidence            4222212122  2479999999988866532      11  245678899999999976        56899998776  


Q ss_pred             --------cEEEeccCCceecCC
Q 039406          215 --------EAKVADFGLAKIASD  229 (243)
Q Consensus       215 --------~~kl~DFG~a~~~~~  229 (243)
                              .+.|+||+-+.....
T Consensus       245 ~d~~~~~~~~~iID~~Q~V~~~h  267 (397)
T 4gyi_A          245 EDPSSITLTPIIIXFPQMVSMDH  267 (397)
T ss_dssp             SCTTSEEEEEEECCCTTCEETTS
T ss_pred             ccccccccceEEEEeCCcccCCC
Confidence                    389999998876543

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=99.01  E-value=1.1e-09  Score=88.78  Aligned_cols=81  Identities=7%  Similarity=-0.038  Sum_probs=64.0

Q ss_pred             HHHHhCCCCccceeeecCceEEEEEEecCCc-----------hhHHHHHHHHHHHHhcC-CCccceEEEEEEeCCeeEEE
Q 039406           94 LARATDGFSDANLLRQDGFGYVHRGVLPNGK-----------EGEREFQAEVEIISRVH-HKHLVSLVGYYTAGSQRMLV  161 (243)
Q Consensus        94 ~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~-----------~~~~~~~~E~~~l~~l~-hp~iv~~~~~~~~~~~~~lv  161 (243)
                      +....++|.....++.|+.+.||++......           .....+.+|+.+|+.+. +..+.++++++...+..|+|
T Consensus         9 l~~~l~~~~~~~~~~g~s~~~v~~~~~~~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~lv   88 (263)
T 3tm0_A            9 LKKLIEKYRCVKDTEGMSPAKVYKLVGENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLL   88 (263)
T ss_dssp             HHHHHTTSEEEECCSCCSSSEEEEEECSSCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEE
T ss_pred             HHHHhccceeEeeccCCCCCeEEEEECCCCcEEEEeCCcccCCCHHHHHHHHHHHHHHhcCCCCCeEEEEEecCCceEEE
Confidence            3455678988888998999999998643221           12345889999999984 67788999999999999999


Q ss_pred             EeccCCCCHHHHh
Q 039406          162 YEFVLNNTLVFHL  174 (243)
Q Consensus       162 ~e~~~~g~L~~~l  174 (243)
                      |||++|.+|.+.+
T Consensus        89 ~e~i~G~~l~~~~  101 (263)
T 3tm0_A           89 MSEADGVLCSEEY  101 (263)
T ss_dssp             EECCSSEEHHHHC
T ss_pred             EEecCCeehhhcc
Confidence            9999999998763

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=98.71  E-value=2.1e-08  Score=80.68  Aligned_cols=73  Identities=16%  Similarity=0.059  Sum_probs=51.0

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch---------hHHHHHHHHHHHHhcCCCc--cceEEEEEEeCCeeEEEEeccCC
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE---------GEREFQAEVEIISRVHHKH--LVSLVGYYTAGSQRMLVYEFVLN  167 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~---------~~~~~~~E~~~l~~l~hp~--iv~~~~~~~~~~~~~lv~e~~~~  167 (243)
                      .++....+.+.|..+.||++....+..         ....+.+|+.+|+.+.+.+  +.+++.++...+..|+||||++|
T Consensus        20 ~~~~~~~~~~gg~~~~v~~~~~~~g~~~vlK~~~~~~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~~~v~e~i~G   99 (264)
T 1nd4_A           20 FGYDWAQQTIGCSDAAVFRLSAQGRPVLFVKTDLSGALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPG   99 (264)
T ss_dssp             TTCEEEECSCTTSSCEEEEEECTTSCCEEEEEECSCTTSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECCSS
T ss_pred             CCCceEecccCCCCceEEEEecCCCCeEEEEeCCcccchhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCCEEEEEecCC
Confidence            345444333456668999886543221         2245788999999985434  56789888888889999999999


Q ss_pred             CCHH
Q 039406          168 NTLV  171 (243)
Q Consensus       168 g~L~  171 (243)
                      .+|.
T Consensus       100 ~~l~  103 (264)
T 1nd4_A          100 QDLL  103 (264)
T ss_dssp             EETT
T ss_pred             cccC
Confidence            8774

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=98.60  E-value=2.1e-07  Score=78.79  Aligned_cols=98  Identities=13%  Similarity=0.136  Sum_probs=63.1

Q ss_pred             CCccceeeecCceEEEEEEecCC-------c-------hhHHHHHHHHHHHHhcC--CCccceEEEEEEeC---CeeEEE
Q 039406          101 FSDANLLRQDGFGYVHRGVLPNG-------K-------EGEREFQAEVEIISRVH--HKHLVSLVGYYTAG---SQRMLV  161 (243)
Q Consensus       101 ~~~~~~lg~G~~g~V~~~~~~~~-------~-------~~~~~~~~E~~~l~~l~--hp~iv~~~~~~~~~---~~~~lv  161 (243)
                      ....+.|+.|.++.||+......       .       .....+.+|+.+|+.|.  +..+.+++.++.+.   +..|+|
T Consensus        40 ~~~~~~l~~G~sn~~y~v~~~~~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~v  119 (359)
T 3dxp_A           40 PLSVEQFKGGQSNPTFKLVTPGQTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFYI  119 (359)
T ss_dssp             CCEEEECCC-CCSCEEEEECSSCEEEEECCCC----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEEE
T ss_pred             CceEEEcCCcccceEEEEEECCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEEE
Confidence            34567899999999998854322       1       11346788999999997  45678899888766   458999


Q ss_pred             EeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhh
Q 039406          162 YEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLH  202 (243)
Q Consensus       162 ~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH  202 (243)
                      |||++|..+.+...    ..++......++.+++..|..||
T Consensus       120 me~v~G~~l~~~~~----~~l~~~~~~~~~~~l~~~La~LH  156 (359)
T 3dxp_A          120 MEFVSGRVLWDQSL----PGMSPAERTAIYDEMNRVIAAMH  156 (359)
T ss_dssp             EECCCCBCCCCTTC----TTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEecCCeecCCCcc----ccCCHHHHHHHHHHHHHHHHHHh
Confidence            99999877643111    12445555555555555555554

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=98.00  E-value=8.5e-05  Score=59.88  Aligned_cols=76  Identities=11%  Similarity=0.011  Sum_probs=52.2

Q ss_pred             hCCCCccceeeecCce-EEEEEEecCCc----------hhHHHHHHHHHHHHhcC-CCccceEEEEEEeCCeeEEEEecc
Q 039406           98 TDGFSDANLLRQDGFG-YVHRGVLPNGK----------EGEREFQAEVEIISRVH-HKHLVSLVGYYTAGSQRMLVYEFV  165 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g-~V~~~~~~~~~----------~~~~~~~~E~~~l~~l~-hp~iv~~~~~~~~~~~~~lv~e~~  165 (243)
                      ..+|.. +.+..|..+ .||+.....+.          .....+.+|...|+.|. +--+.+++.++.+.+..|+|||++
T Consensus        24 l~g~~~-~~~~~G~S~~~v~rl~~~~~~~~~~lk~~~~~~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~~~lvme~l  102 (272)
T 4gkh_A           24 LYGYRW-ARDNVGQSGATIYRLYGKPNAPELFLKHGKGSVANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLLTTAI  102 (272)
T ss_dssp             HTTCEE-EEEECSSSSCEEEEEECCTTCCCEEEEEEETHHHHHHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECC
T ss_pred             ccCCeE-EEccCCCcCCeEEEEEecCCCeEEEEEECCCCCHhHHHHHHHHHHHhccCCCcCeEEEEEEECCeEEEEEEee
Confidence            344543 345555544 57876544332          13456788999998884 334678899999999999999999


Q ss_pred             CCCCHHHHh
Q 039406          166 LNNTLVFHL  174 (243)
Q Consensus       166 ~~g~L~~~l  174 (243)
                      +|.++.+..
T Consensus       103 ~G~~~~~~~  111 (272)
T 4gkh_A          103 PGKTAFQVL  111 (272)
T ss_dssp             CSEEHHHHH
T ss_pred             CCccccccc
Confidence            998776654

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=97.98  E-value=2.8e-05  Score=64.06  Aligned_cols=70  Identities=13%  Similarity=0.103  Sum_probs=46.4

Q ss_pred             ccceeeecCceEEEEEE------ecCCchhHHHHHHHHHHHHhcC-CCc--cceEEEEEEeCC---eeEEEEeccCCCCH
Q 039406          103 DANLLRQDGFGYVHRGV------LPNGKEGEREFQAEVEIISRVH-HKH--LVSLVGYYTAGS---QRMLVYEFVLNNTL  170 (243)
Q Consensus       103 ~~~~lg~G~~g~V~~~~------~~~~~~~~~~~~~E~~~l~~l~-hp~--iv~~~~~~~~~~---~~~lv~e~~~~g~L  170 (243)
                      ..+.++.|....||+..      ..........+.+|+++|+.+. +..  +.+++......+   ..|+|||+++|..|
T Consensus        24 ~i~~~~~G~~n~v~~v~~~~vlR~~~~~~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~~~~~vm~~i~G~~l  103 (304)
T 3sg8_A           24 TIEISGEGNDCIAYEINRDFIFKFPKHSRGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAGFTKIKGVPL  103 (304)
T ss_dssp             CCCEEEECSSEEEEESTTSEEEEEESSHHHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCSCSCEEEECCCCEEC
T ss_pred             eeEecCCCCcceEEEECCEEEEEecCCcchHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCCcceEEEcccCCeEC
Confidence            35678999999998752      2223334677899999999884 333  345555443333   35889999999776


Q ss_pred             HH
Q 039406          171 VF  172 (243)
Q Consensus       171 ~~  172 (243)
                      .+
T Consensus       104 ~~  105 (304)
T 3sg8_A          104 TP  105 (304)
T ss_dssp             CH
T ss_pred             Cc
Confidence            54

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=97.68  E-value=0.00096  Score=55.02  Aligned_cols=69  Identities=14%  Similarity=0.150  Sum_probs=48.6

Q ss_pred             cceeeecCceEEEEE------EecCCchhHHHHHHHHHHHHhcCCC---ccceEEEEEE-eCCeeEEEEeccCCCCHHH
Q 039406          104 ANLLRQDGFGYVHRG------VLPNGKEGEREFQAEVEIISRVHHK---HLVSLVGYYT-AGSQRMLVYEFVLNNTLVF  172 (243)
Q Consensus       104 ~~~lg~G~~g~V~~~------~~~~~~~~~~~~~~E~~~l~~l~hp---~iv~~~~~~~-~~~~~~lv~e~~~~g~L~~  172 (243)
                      .+.++.|....||+.      +..........+.+|..+|+.|.+.   .+.+++.++. ..+..|+||||++|..|.+
T Consensus        24 v~~l~~G~~n~v~~vg~~~VlR~~~~~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g~~~~v~e~i~G~~l~~  102 (306)
T 3tdw_A           24 VESLGEGFRNYAILVNGDWVFRFPKSQQGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNPFVGYRKVQGQILGE  102 (306)
T ss_dssp             EEEEEECSSEEEEEETTTEEEEEESSHHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTTSCEEEEEECCCSEECHH
T ss_pred             eeecCCCcceeEEEECCEEEEEecCCchHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccCCCceEEEEeccCCeECch
Confidence            456888888888876      1222223456789999999999642   3566676664 4556789999999977654

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=96.90  E-value=0.0056  Score=50.61  Aligned_cols=27  Identities=26%  Similarity=0.268  Sum_probs=22.9

Q ss_pred             HhhcCC--CcEEECCCCcEEEeccCCcee
Q 039406          200 YLHDDL--ANILLDFKFEAKVADFGLAKI  226 (243)
Q Consensus       200 ~lH~~~--~NiLl~~~~~~kl~DFG~a~~  226 (243)
                      .+|+|.  .|||++.++.+.|+||+.+..
T Consensus       224 l~HgD~~~~Nil~~~~~~~~lIDfe~a~~  252 (346)
T 2q83_A          224 LCHQDYGTGNTLLGENEQIWVIDLDTVSF  252 (346)
T ss_dssp             EECSSCSTTSEEECGGGCEEECCCTTCEE
T ss_pred             eecCCCCcccEEEeCCCcEEEEehhhccc
Confidence            468875  799998888999999999865

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=96.82  E-value=0.0046  Score=52.66  Aligned_cols=64  Identities=9%  Similarity=-0.029  Sum_probs=41.9

Q ss_pred             ccceeeecCceEEEEEEecCCc--------------------hhHHHHHHHHHHHHhcCC--C-ccceEEEEEEeCCeeE
Q 039406          103 DANLLRQDGFGYVHRGVLPNGK--------------------EGEREFQAEVEIISRVHH--K-HLVSLVGYYTAGSQRM  159 (243)
Q Consensus       103 ~~~~lg~G~~g~V~~~~~~~~~--------------------~~~~~~~~E~~~l~~l~h--p-~iv~~~~~~~~~~~~~  159 (243)
                      ..+.||.|.++.||++....+.                    ....++..|.++|+.+..  + .+.+++.+  +.+..+
T Consensus        34 ~~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~--d~~~~~  111 (397)
T 2olc_A           34 TCQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEMAV  111 (397)
T ss_dssp             EEEECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTTTE
T ss_pred             EEEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEE--cCCccE
Confidence            3568999999999999543211                    012356789999988742  3 34466644  445678


Q ss_pred             EEEeccCCC
Q 039406          160 LVYEFVLNN  168 (243)
Q Consensus       160 lv~e~~~~g  168 (243)
                      +||||+.+.
T Consensus       112 lvmE~l~g~  120 (397)
T 2olc_A          112 TVMEDLSHL  120 (397)
T ss_dssp             EEECCCTTS
T ss_pred             EEEEeCCCc
Confidence            999999763

>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}

Probab=95.77  E-value=0.03  Score=48.02  Aligned_cols=27  Identities=19%  Similarity=0.325  Sum_probs=22.2

Q ss_pred             HhhcCC--CcEEECCCCcEEEeccCCceec
Q 039406          200 YLHDDL--ANILLDFKFEAKVADFGLAKIA  227 (243)
Q Consensus       200 ~lH~~~--~NiLl~~~~~~kl~DFG~a~~~  227 (243)
                      .+|.|+  .|||++.++ ++|+||+.+..-
T Consensus       234 liHGDl~~~Nil~~~~~-~~lID~e~a~~G  262 (420)
T 2pyw_A          234 LIHGDLHTGSVMVTQDS-TQVIDPEFSFYG  262 (420)
T ss_dssp             EECSCCSGGGEEECSSC-EEECCCTTCEEE
T ss_pred             EEecCCCCCcEEEeCCC-CEEEeCcccccC
Confidence            458876  799998776 999999998753

>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}

Probab=95.51  E-value=0.057  Score=44.55  Aligned_cols=87  Identities=13%  Similarity=0.011  Sum_probs=62.9

Q ss_pred             CccceeeecCceEEEEEEecCCc--------hhHHHHHHHHHHHHhcC---CCccceEEEEEEeCCeeEEEEeccCCCCH
Q 039406          102 SDANLLRQDGFGYVHRGVLPNGK--------EGEREFQAEVEIISRVH---HKHLVSLVGYYTAGSQRMLVYEFVLNNTL  170 (243)
Q Consensus       102 ~~~~~lg~G~~g~V~~~~~~~~~--------~~~~~~~~E~~~l~~l~---hp~iv~~~~~~~~~~~~~lv~e~~~~g~L  170 (243)
                      ...+.|+.|.+..+|+.......        .....+..|...|+.|.   ...+.+++.+....+..|+||||+++..+
T Consensus        39 ~~~~~l~gG~~n~~y~v~~~~~~~vlK~~~~~~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~g~~~lvme~l~G~~~  118 (312)
T 3jr1_A           39 KHKEKLYSGEMNEIWLINDEVQTVFVKINERSYRSMFRAEADQLALLAKTNSINVPLVYGIGNSQGHSFLLLEALNKSKN  118 (312)
T ss_dssp             CEEEEECCSSSSEEEEEESSSCEEEEEEEEGGGHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECSSEEEEEEECCCCCCC
T ss_pred             eeeEEeCCccceeeeEEEECCCeEEEEeCCcccHHHHHHHHHHHHHHHhhCCCCcceEEEEeecCCceEEEEEeccCCCC
Confidence            34567899999999988643221        23566889999988883   35688899988888899999999998753


Q ss_pred             HHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhcC
Q 039406          171 VFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHDD  204 (243)
Q Consensus       171 ~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~  204 (243)
                      ..                ..+.++...|.-||+.
T Consensus       119 ~~----------------~~~~~lG~~LA~LH~~  136 (312)
T 3jr1_A          119 KQ----------------SSFTIFAEKIAQLHQI  136 (312)
T ss_dssp             CT----------------THHHHHHHHHHHHHHC
T ss_pred             Cc----------------hhHHHHHHHHHHHHcC
Confidence            10                1345666777788873

>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6

Probab=95.05  E-value=0.37  Score=39.25  Aligned_cols=81  Identities=6%  Similarity=-0.073  Sum_probs=44.7

Q ss_pred             ccHHHHHHHhCCCCc-----cceeeecCceEEEEEEecCCc---------hhHHHHHHHHHHHHhcCCCc--cceEEE--
Q 039406           89 FTYEELARATDGFSD-----ANLLRQDGFGYVHRGVLPNGK---------EGEREFQAEVEIISRVHHKH--LVSLVG--  150 (243)
Q Consensus        89 ~~~~~~~~~~~~~~~-----~~~lg~G~~g~V~~~~~~~~~---------~~~~~~~~E~~~l~~l~hp~--iv~~~~--  150 (243)
                      ++.+++......|..     .+.|+.|....+|+....++.         .....+..|+.++..|...+  +.+++.  
T Consensus         7 ~~~~~l~~~l~~~~~~~~~~~~~i~~G~~n~~~~v~~~~g~~vlk~~~~~~~~~~l~~e~~~l~~L~~~g~~vP~~~~~~   86 (322)
T 2ppq_A            7 ITEDELRNFLTQYDVGSLTSYKGIAEGVENSNFLLHTTKDPLILTLYEKRVEKNDLPFFLGLMQHLAAKGLSCPLPLPRK   86 (322)
T ss_dssp             CCHHHHHHHHTTBCCCCEEEEEEECC---EEEEEEEESSCCEEEEEECC---CCHHHHHHHHHHHHHHTTCCCCCBCCBT
T ss_pred             CCHHHHHHHHHhCCCCcceEeeccCCCcccceEEEEeCCccEEEEEeCCCCCHHHHHHHHHHHHHHHHCCCCCCcccCCC
Confidence            456677776666754     234666777888887543321         12245667887777663211  233321  


Q ss_pred             ----EEEeCCeeEEEEeccCCCC
Q 039406          151 ----YYTAGSQRMLVYEFVLNNT  169 (243)
Q Consensus       151 ----~~~~~~~~~lv~e~~~~g~  169 (243)
                          +....+..+++|+|++|..
T Consensus        87 ~g~~~~~~~g~~~~l~~~l~G~~  109 (322)
T 2ppq_A           87 DGELLGELSGRPAALISFLEGMW  109 (322)
T ss_dssp             TCCSCEEETTEEEEEEECCCCBC
T ss_pred             CCCEEEEECCEEEEEEEeCCCcC
Confidence                1223467899999998754

>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*

Probab=94.73  E-value=0.092  Score=44.56  Aligned_cols=63  Identities=13%  Similarity=0.165  Sum_probs=36.4

Q ss_pred             cceeeecCceEEEEEEecC--------Cc-----------hhHHHHHHHHHHHHhcC-CCccceEEEEEEeCCeeEEEEe
Q 039406          104 ANLLRQDGFGYVHRGVLPN--------GK-----------EGEREFQAEVEIISRVH-HKHLVSLVGYYTAGSQRMLVYE  163 (243)
Q Consensus       104 ~~~lg~G~~g~V~~~~~~~--------~~-----------~~~~~~~~E~~~l~~l~-hp~iv~~~~~~~~~~~~~lv~e  163 (243)
                      .+.|..|-...+|++....        ..           .....+.+|..+|+.|. +.-..++++++.+    .+|||
T Consensus        55 v~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~~~~~~~~~~rE~~vl~~L~~~gv~P~ll~~~~~----g~v~e  130 (379)
T 3feg_A           55 VYPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAILQGVDSLVLESVMFAILAERSLGPQLYGVFPE----GRLEQ  130 (379)
T ss_dssp             CEEC-----CCEEEEECCTTSCCCSSCCSEEEEEECC---CCHHHHHHHHHHHHHHHHTTSSCCEEEEETT----EEEEE
T ss_pred             EEEcCCcccccEEEEEeCCCccccCCCCCeEEEEECCCccchHHHHHHHHHHHHHHHhcCCCCeEEEEcCC----ccEEE
Confidence            3466667777788876532        01           12455678999988874 3333567766543    29999


Q ss_pred             ccCCCCH
Q 039406          164 FVLNNTL  170 (243)
Q Consensus       164 ~~~~g~L  170 (243)
                      |++|..|
T Consensus       131 ~i~G~~l  137 (379)
T 3feg_A          131 YIPSRPL  137 (379)
T ss_dssp             CCSEEEC
T ss_pred             EecCccC
Confidence            9987544

>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}

Probab=93.66  E-value=0.21  Score=40.55  Aligned_cols=68  Identities=10%  Similarity=0.068  Sum_probs=38.5

Q ss_pred             CCccceeeecCceEEEEE-----EecCCc-hhHHHHHHHHHHHHhcCCCcc-ceEEEEEEeCCeeEEEEecc-CCCCH
Q 039406          101 FSDANLLRQDGFGYVHRG-----VLPNGK-EGEREFQAEVEIISRVHHKHL-VSLVGYYTAGSQRMLVYEFV-LNNTL  170 (243)
Q Consensus       101 ~~~~~~lg~G~~g~V~~~-----~~~~~~-~~~~~~~~E~~~l~~l~hp~i-v~~~~~~~~~~~~~lv~e~~-~~g~L  170 (243)
                      +...+.|+.|....+|++     +..... .......+|+.+++.+..-++ .+++.+  +.+.-++|+||+ +|..|
T Consensus        20 ~~~i~~l~gG~tN~~~~~~~~vlR~~~~~~~~~~~r~~E~~~l~~l~~~g~~P~~~~~--~~~~~~~v~e~i~~g~~l   95 (301)
T 3dxq_A           20 YTGPLERLGGLTNLVFRAGDLCLRIPGKGTEEYINRANEAVAAREAAKAGVSPEVLHV--DPATGVMVTRYIAGAQTM   95 (301)
T ss_dssp             CCSCEEEESCSSEEEEEETTEEEEEECC----CCCHHHHHHHHHHHHHTTSSCCEEEE--CTTTCCEEEECCTTCEEC
T ss_pred             ccceeEcCCccccccceeeeEEEECCCCCccceeCHHHHHHHHHHHHHcCCCCceEEE--ECCCCEEEEeecCCCccC
Confidence            344678888988999887     000000 111123568888777642223 456654  333457899999 66433

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=93.54  E-value=0.078  Score=44.13  Aligned_cols=99  Identities=11%  Similarity=-0.004  Sum_probs=58.3

Q ss_pred             ccee-eecCceEEEEEEec--------C---------Cch-----hHHHHHHHHHHHHhcC-C--CccceEEEEEEeC--
Q 039406          104 ANLL-RQDGFGYVHRGVLP--------N---------GKE-----GEREFQAEVEIISRVH-H--KHLVSLVGYYTAG--  155 (243)
Q Consensus       104 ~~~l-g~G~~g~V~~~~~~--------~---------~~~-----~~~~~~~E~~~l~~l~-h--p~iv~~~~~~~~~--  155 (243)
                      .+.| +.|..+.+|+....        .         ...     ....+.+|+.+|+.|. +  -.+.+++.++.+.  
T Consensus        25 ~~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~~~  104 (357)
T 3ats_A           25 ESGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTDVPVPRVRWIETTGDV  104 (357)
T ss_dssp             EEEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHHHHHHHCCSCCCCEEEEECSSTT
T ss_pred             EEECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHHHHhhcCCCCCCcEEEEccCCCc
Confidence            3556 77777888876543        1         111     1245788999998884 2  3567788877654  


Q ss_pred             -CeeEEEEeccCCCCHHHHhccC---C-CCCCCHHHHHHHHHHHHHhhhHhh
Q 039406          156 -SQRMLVYEFVLNNTLVFHLHGK---G-QPTMDWPTRIKIALGSAKGLAYLH  202 (243)
Q Consensus       156 -~~~~lv~e~~~~g~L~~~l~~~---~-~~~l~~~~~~~i~~~i~~~l~~lH  202 (243)
                       +..|+||||++|..+.+.+...   . -..++......++.++...|.-||
T Consensus       105 ~g~~~~v~e~l~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~La~LH  156 (357)
T 3ats_A          105 LGTPFFLMDYVEGVVPPDVMPYTFGDNWFADAPAERQRQLQDATVAALATLH  156 (357)
T ss_dssp             TSSCEEEEECCCCBCCCBTTBGGGSCSTTTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred             cCCceEEEEecCCCChhhcCcccccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence             3578999999987765432100   0 001444444455555555555555

>4ann_A ESSB; membrane protein, membrane secretion, ESS type VII secretion virulence; 1.05A {Staphylococcus aureus subsp}

Probab=92.31  E-value=0.44  Score=36.94  Aligned_cols=82  Identities=7%  Similarity=0.039  Sum_probs=60.0

Q ss_pred             cCCCccceEEEEEEeCCeeEEEEeccCCC-CHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc------CCCcEEECC
Q 039406          140 VHHKHLVSLVGYYTAGSQRMLVYEFVLNN-TLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD------DLANILLDF  212 (243)
Q Consensus       140 l~hp~iv~~~~~~~~~~~~~lv~e~~~~g-~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~------~~~NiLl~~  212 (243)
                      ..|++++.. .+-++.+.+.+.++.-..+ ++.. +.     .++....+.++..|+.-..+++.      .|+||+++.
T Consensus        42 ~~~~~Fl~~-~I~e~eD~v~~~y~~~~~~~~f~~-ik-----~~~~~eKlr~l~ni~~l~~~~~~r~tf~L~P~NL~f~~  114 (215)
T 4ann_A           42 QHSPYFIDA-ELTELRDSFQIHYDINDNHTPFDN-IK-----SFTKNEKLRYLLNIKNLEEVNRTRYTFVLAPDELFFTR  114 (215)
T ss_dssp             SCCTTBCCE-EEEECSSEEEEEECCCTTSEEGGG-GG-----GSCHHHHHHHHHHGGGGGGGGGSSEECCCSGGGEEECT
T ss_pred             ccCCcccce-EEEEcccEEEEEEEcCcccCCHHH-HH-----hcCHHHHHHHHHHHHHHHHHhcCceEEEEecceEEEcC
Confidence            368888877 5666777777777755422 3333 32     26778888999999888877774      579999999


Q ss_pred             CCcEEEeccCCceecC
Q 039406          213 KFEAKVADFGLAKIAS  228 (243)
Q Consensus       213 ~~~~kl~DFG~a~~~~  228 (243)
                      ++.++|.-.|+-..+.
T Consensus       115 ~~~p~i~~RGik~~l~  130 (215)
T 4ann_A          115 DGLPIAKTRGLQNVVD  130 (215)
T ss_dssp             TSCEEESCCEETTTBS
T ss_pred             CCCEEEEEccCccCCC
Confidence            9999999999855443

>4ano_A ESSB; membrane protein, membrane secretion, ESS type V secretion S; HET: MSE; 1.70A {Geobacillus thermodenitrificans ng80-2organism_taxid}

Probab=91.32  E-value=0.73  Score=35.82  Aligned_cols=80  Identities=9%  Similarity=0.029  Sum_probs=58.6

Q ss_pred             CCCccceEEEEEEeCCeeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhh-Hhhc------CCCcEEECCC
Q 039406          141 HHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLA-YLHD------DLANILLDFK  213 (243)
Q Consensus       141 ~hp~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~-~lH~------~~~NiLl~~~  213 (243)
                      .||++  -..+-.+++.+.+.++.-+++.=...+.     .++....+.++.+++.-.. +++.      .|+||++|.+
T Consensus        48 ~~~~f--~~~I~~~eD~~~i~y~~~~~~~~f~~i~-----~~~~~eKlrll~nl~~L~~~~~~~r~tf~l~P~NL~f~~~  120 (219)
T 4ano_A           48 VDPCI--VRDIDVSEDEVKVVIKPPSSFLTFAAIR-----KTTLLSRIRAAIHLVSKVKHHSARRLIFIVCPENLMFNRA  120 (219)
T ss_dssp             SCSSS--EEEEEECSSEEEEEEECCTTCEEHHHHH-----TSCHHHHHHHHHHHHHHHSSCCSSSEECCCCGGGEEECTT
T ss_pred             cCCCC--CeEEEEeCCEEEEEEEcCcccCcHHHHH-----hcCHHHHHHHHHHHHHHHHHhhhCceeEEEeCceEEEeCC
Confidence            57777  4444577788888887654433233342     2777888899999988777 6665      5799999999


Q ss_pred             CcEEEeccCCceec
Q 039406          214 FEAKVADFGLAKIA  227 (243)
Q Consensus       214 ~~~kl~DFG~a~~~  227 (243)
                      +.++|.-.|+-..+
T Consensus       121 ~~p~i~hRGi~~~l  134 (219)
T 4ano_A          121 LEPFFLHVGVKESL  134 (219)
T ss_dssp             CCEEESCCEETTTB
T ss_pred             CcEEEEEcCCcccC
Confidence            99999999986555

>3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta protein, PIK3C3, compound 15E, structural genomics, SGC stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A

Probab=87.65  E-value=5.3  Score=35.92  Aligned_cols=79  Identities=14%  Similarity=0.138  Sum_probs=45.0

Q ss_pred             ceEEEEEEeCCeeEEEEeccCCCCHHHHhccCC----------CCC-----CCHHHHHHHHHHH--HHhhhHh----hcC
Q 039406          146 VSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKG----------QPT-----MDWPTRIKIALGS--AKGLAYL----HDD  204 (243)
Q Consensus       146 v~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~----------~~~-----l~~~~~~~i~~~i--~~~l~~l----H~~  204 (243)
                      ++.|.+.......- ++|++++.++.+.+...+          ...     ..+.....++..+  ..-+.|+    -|.
T Consensus       402 i~~Y~Vipls~~~G-lIE~V~~~tl~~il~~~~~l~~~f~~~~~~~~~~~~~~~~a~~nF~~S~A~ySvv~YILGigDRH  480 (614)
T 3ls8_A          402 LTPYKVLATSTKHG-FMQFIQSVPVAEVLDTEGSIQNFFRKYAPSENGPNGISAEVMDTYVKSCAGYCVITYILGVGDRH  480 (614)
T ss_dssp             CCCCCEEESSSSEE-EEECCCCEEHHHHHHHTSSHHHHHHHHSBCTTSGGGBCHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred             eeccEEEEecCCCc-eEEEeCCccHHHHHHccChHHHHHHHhCCCccccccccHHHHHHHHHHHHHHhHhheeeeccCCC
Confidence            44566655555444 357776655555543211          000     1233333444333  2234444    346


Q ss_pred             CCcEEECCCCcEEEeccCCce
Q 039406          205 LANILLDFKFEAKVADFGLAK  225 (243)
Q Consensus       205 ~~NiLl~~~~~~kl~DFG~a~  225 (243)
                      ++||||+.+|++.=+|||++-
T Consensus       481 ~~NILld~tG~v~HIDFG~~f  501 (614)
T 3ls8_A          481 LDNLLLTKTGKLFHIDFGYIL  501 (614)
T ss_dssp             TTSEEECTTSCEEECCCSSCT
T ss_pred             CcceeEcCCCCEeeeehHHhh
Confidence            799999999999999999874

>2x6h_A GH13170P, VPS34, phosphotidylinositol 3 kinase 59F; transferase; 2.90A {Drosophila melanogaster} PDB: 2x6f_A 2x6i_A* 2x6j_A* 2x6k_A*

Probab=86.86  E-value=7.1  Score=35.68  Aligned_cols=23  Identities=30%  Similarity=0.307  Sum_probs=20.6

Q ss_pred             cCCCcEEECCCCcEEEeccCCce
Q 039406          203 DDLANILLDFKFEAKVADFGLAK  225 (243)
Q Consensus       203 ~~~~NiLl~~~~~~kl~DFG~a~  225 (243)
                      |.++||||+.+|++.=+|||++-
T Consensus       553 RH~~NILid~tG~v~HIDFG~~f  575 (696)
T 2x6h_A          553 RHLDNLLLTTNGKLFHIDFGYIL  575 (696)
T ss_dssp             CCTTTEEECTTSCEEECCCCSCT
T ss_pred             CCCcceEEeCCCCEEEEeehhhh
Confidence            46799999999999999999874

>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}

Probab=84.13  E-value=1.8  Score=34.60  Aligned_cols=66  Identities=17%  Similarity=0.138  Sum_probs=45.7

Q ss_pred             CCCccceeeecCceEEEEEEecCCch------------hHHHHHHHHHHHHhcCC---CccceEEEEEEeCCeeEEEEec
Q 039406          100 GFSDANLLRQDGFGYVHRGVLPNGKE------------GEREFQAEVEIISRVHH---KHLVSLVGYYTAGSQRMLVYEF  164 (243)
Q Consensus       100 ~~~~~~~lg~G~~g~V~~~~~~~~~~------------~~~~~~~E~~~l~~l~h---p~iv~~~~~~~~~~~~~lv~e~  164 (243)
                      .....+.+|.|..+.||+....++..            ....|..|...|+.|.-   --+.+++.+.    .-++||||
T Consensus        16 ~v~~v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~~~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~~----~~~lv~e~   91 (288)
T 3f7w_A           16 EVAAVAERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGWD----DRTLAMEW   91 (288)
T ss_dssp             CEEEEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEEE----TTEEEEEC
T ss_pred             CeEEEEecCCCCCeEEEEEEECCCCEEEEEEeCCCCcchhhHHHHHHHHHHHHHhhCCCCcceEEecc----CceEEEEe
Confidence            45557789999999999998765432            23457889999988842   2345555542    34789999


Q ss_pred             cCCCC
Q 039406          165 VLNNT  169 (243)
Q Consensus       165 ~~~g~  169 (243)
                      ++++.
T Consensus        92 l~~~~   96 (288)
T 3f7w_A           92 VDERP   96 (288)
T ss_dssp             CCCCC
T ss_pred             ecccC
Confidence            97653

>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}

Probab=80.63  E-value=1.6  Score=37.93  Aligned_cols=62  Identities=10%  Similarity=0.028  Sum_probs=37.8

Q ss_pred             cceeeecCceEEEEEEecCC-ch-----------hHHHHHHHHHHHHhcCCCcc-ceEEEEEEeCCeeEEEEeccCCCC
Q 039406          104 ANLLRQDGFGYVHRGVLPNG-KE-----------GEREFQAEVEIISRVHHKHL-VSLVGYYTAGSQRMLVYEFVLNNT  169 (243)
Q Consensus       104 ~~~lg~G~~g~V~~~~~~~~-~~-----------~~~~~~~E~~~l~~l~hp~i-v~~~~~~~~~~~~~lv~e~~~~g~  169 (243)
                      .+.|+.|-...+|++..... ..           ......+|..+|+.|...++ .++++++.  +  .+||||++|..
T Consensus       113 i~~lsgG~tN~~y~v~~~~~~~~~vLRi~g~~~~~~idR~~E~~vl~~L~~~gl~P~ll~~~~--~--G~v~e~I~G~~  187 (458)
T 2qg7_A          113 FQIINGGITNILIKVKDMSKQAKYLIRLYGPKTDEIINREREKKISCILYNKNIAKKIYVFFT--N--GRIEEFMDGYA  187 (458)
T ss_dssp             EEEECC--CEEEEEEEETTTTEEEEEEEECC-CCSCSCHHHHHHHHHHHTTSSSBCCEEEEET--T--EEEEECCCSEE
T ss_pred             EEEcCCCeEeEEEEEEECCCCceEEEEECCCChhhhcCHHHHHHHHHHHHhcCCCCCEEEEeC--C--eEEEEeeCCcc
Confidence            45677788888998875441 11           01112579999998864444 56777663  2  35999998743

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	243
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	9e-31
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	1e-30
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	6e-30
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	7e-29
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	7e-28
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	2e-27
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	2e-27
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	5e-27
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	7e-26
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	8e-26
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	3e-25
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	1e-24
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	1e-23
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	1e-23
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	4e-23
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	5e-23
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	5e-23
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	1e-22
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	1e-22
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	1e-22
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	4e-22
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	5e-22
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	5e-22
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	7e-21
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	8e-21
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	2e-20
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	2e-20
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	1e-19
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	2e-19
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	8e-19
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	1e-18
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	2e-18
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	9e-18
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	4e-17
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	1e-16
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	2e-16
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	2e-16
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	2e-16
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	5e-16
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	2e-15
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	3e-15
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	3e-15
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	4e-15
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	4e-15
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	3e-14
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	9e-14
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	1e-13
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	2e-13
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	2e-13
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	3e-13
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	3e-13
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	4e-13
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	6e-13
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	8e-13
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	3e-12
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	3e-11
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	5e-11
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	3e-10
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	1e-07
d1zara2	191	d.144.1.9 (A:91-281) Rio2 serine protein kinase C-	1e-07
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	2e-06

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (282), Expect = 9e-31
 Identities = 39/154 (25%), Positives = 66/154 (42%), Gaps = 23/154 (14%)

Query: 111 GFGYVHRGVLPNG------------KEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQR 158
            FG V++G                  +  + F+ EV ++ +  H +++  +GY T   Q 
Sbjct: 20  SFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYST-APQL 78

Query: 159 MLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD------DL--ANILL 210
            +V ++   ++L  HLH       +    I IA  +A+G+ YLH       DL   NI L
Sbjct: 79  AIVTQWCEGSSLYHHLHIIETK-FEMIKLIDIARQTAQGMDYLHAKSIIHRDLKSNNIFL 137

Query: 211 DFKFEAKVADFGLAKIASDV-NTHVSTRVMGTFG 243
                 K+ DFGLA + S    +H   ++ G+  
Sbjct: 138 HEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSIL 171

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  112 bits (282), Expect = 1e-30
 Identities = 43/191 (22%), Positives = 74/191 (38%), Gaps = 36/191 (18%)

Query: 88  TFTYEELARATDGFSDA---------NLLRQDGFGYVHRGVLPNG--------------- 123
            FT+E+   A   F+            ++    FG V  G L                  
Sbjct: 6   PFTFEDPNEAVREFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSG 65

Query: 124 --KEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPT 181
             ++  R+F +E  I+ +  H +++ L G  T  +  M++ EF+ N +L      +    
Sbjct: 66  YTEKQRRDFLSEASIMGQFDHPNVIHLEGVVTKSTPVMIITEFMENGSL-DSFLRQNDGQ 124

Query: 182 MDWPTRIKIALGSAKGLAYLHD------DL--ANILLDFKFEAKVADFGLAK-IASDVNT 232
                 + +  G A G+ YL D      DL   NIL++     KV+DFGL++ +  D + 
Sbjct: 125 FTVIQLVGMLRGIAAGMKYLADMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSD 184

Query: 233 HVSTRVMGTFG 243
              T  +G   
Sbjct: 185 PTYTSALGGKI 195

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (276), Expect = 6e-30
 Identities = 35/152 (23%), Positives = 58/152 (38%), Gaps = 20/152 (13%)

Query: 111 GFGYVHRGVLPNGKE-----------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRM 159
            FG V  G      +               F AE  ++ ++ H+ LV L    T      
Sbjct: 25  QFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQE-PIY 83

Query: 160 LVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD------DL--ANILLD 211
           ++ E++ N +LV  L       +     + +A   A+G+A++ +      DL  ANIL+ 
Sbjct: 84  IITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVS 143

Query: 212 FKFEAKVADFGLAKIASDVNTHVSTRVMGTFG 243
                K+ADFGLA++  D              
Sbjct: 144 DTLSCKIADFGLARLIEDNEYTAREGAKFPIK 175

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (268), Expect = 7e-29
 Identities = 30/152 (19%), Positives = 53/152 (34%), Gaps = 20/152 (13%)

Query: 111 GFGYVHRGVLPNGKE-----------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRM 159
            FG V  G      +            E EF  E +++  + H+ LV L G  T      
Sbjct: 16  QFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIF 75

Query: 160 LVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHDD--------LANILLD 211
           ++ E++ N  L+ +L             +++     + + YL             N L++
Sbjct: 76  IITEYMANGCLLNYLREMRHR-FQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVN 134

Query: 212 FKFEAKVADFGLAKIASDVNTHVSTRVMGTFG 243
            +   KV+DFGL++   D     S        
Sbjct: 135 DQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVR 166

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  105 bits (264), Expect = 7e-28
 Identities = 39/164 (23%), Positives = 60/164 (36%), Gaps = 26/164 (15%)

Query: 98  TDGFSDANLLRQDGFGYVHRGV-LPNGK---------------EGEREFQAEVEIISRVH 141
              FSD   +    FG V+    + N +               E  ++   EV  + ++ 
Sbjct: 14  EKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLR 73

Query: 142 HKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL 201
           H + +   G Y       LV E+ L +        K    +       +  G+ +GLAYL
Sbjct: 74  HPNTIQYRGCYLREHTAWLVMEYCLGSASDLLEVHKK--PLQEVEIAAVTHGALQGLAYL 131

Query: 202 HD------DL--ANILLDFKFEAKVADFGLAKIASDVNTHVSTR 237
           H       D+   NILL      K+ DFG A I +  N+ V T 
Sbjct: 132 HSHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPANSFVGTP 175

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (262), Expect = 2e-27
 Identities = 32/170 (18%), Positives = 66/170 (38%), Gaps = 28/170 (16%)

Query: 97  ATDGFSDANLLRQDGFGYVHRGV-LPNGK-------------EGEREFQAEVEIISRVHH 142
             D F   + L     G V +    P+G                  +   E++++   + 
Sbjct: 4   KDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNS 63

Query: 143 KHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLH 202
            ++V   G + +  +  +  E +   +L   L   G+  +      K+++   KGL YL 
Sbjct: 64  PYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGR--IPEQILGKVSIAVIKGLTYLR 121

Query: 203 D-------DL--ANILLDFKFEAKVADFGLAKIASDVNTHVSTRVMGTFG 243
           +       D+  +NIL++ + E K+ DFG++    D    ++   +GT  
Sbjct: 122 EKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLID---SMANSFVGTRS 168

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (259), Expect = 2e-27
 Identities = 39/152 (25%), Positives = 58/152 (38%), Gaps = 20/152 (13%)

Query: 111 GFGYVHRGVLPNGKE-----------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRM 159
            FG VH G   N  +            E +F  E E++ ++ H  LV L G     +   
Sbjct: 17  QFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPIC 76

Query: 160 LVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL------HDDL--ANILLD 211
           LV+EF+ +  L        +      T + + L   +G+AYL      H DL   N L+ 
Sbjct: 77  LVFEFMEHGCL-SDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVG 135

Query: 212 FKFEAKVADFGLAKIASDVNTHVSTRVMGTFG 243
                KV+DFG+ +   D     ST       
Sbjct: 136 ENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVK 167

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (257), Expect = 5e-27
 Identities = 42/188 (22%), Positives = 67/188 (35%), Gaps = 29/188 (15%)

Query: 75  PQSPGLSLGFSKSTFTYEELARATDGFSDANLLRQDGFGYVHRGVLPNGKE--------- 125
           PQ+ GL+          +      +       L Q  FG V  G                
Sbjct: 2   PQTQGLA---------KDAWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPG 52

Query: 126 --GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMD 183
                 F  E +++ ++ H+ LV L    +      +V E++   +L+  L G+    + 
Sbjct: 53  TMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEE-PIYIVTEYMSKGSLLDFLKGETGKYLR 111

Query: 184 WPTRIKIALGSAKGLAYLHD------DL--ANILLDFKFEAKVADFGLAKIASDVNTHVS 235
            P  + +A   A G+AY+        DL  ANIL+      KVADFGLA++  D      
Sbjct: 112 LPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTAR 171

Query: 236 TRVMGTFG 243
                   
Sbjct: 172 QGAKFPIK 179

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.7 bits (248), Expect = 7e-26
 Identities = 39/149 (26%), Positives = 63/149 (42%), Gaps = 18/149 (12%)

Query: 111 GFGYVHRGVLPNGK---------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRM-L 160
            FG V  G     K            + F AE  +++++ H +LV L+G        + +
Sbjct: 19  EFGDVMLGDYRGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYI 78

Query: 161 VYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD------DL--ANILLDF 212
           V E++   +LV +L  +G+  +     +K +L   + + YL        DL   N+L+  
Sbjct: 79  VTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSE 138

Query: 213 KFEAKVADFGLAKIASDVNTHVSTRVMGT 241
              AKV+DFGL K AS         V  T
Sbjct: 139 DNVAKVSDFGLTKEASSTQDTGKLPVKWT 167

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (249), Expect = 8e-26
 Identities = 30/172 (17%), Positives = 63/172 (36%), Gaps = 25/172 (14%)

Query: 91  YEELARATDGFSDANLLR---QDGFGYVHRGVLPNG-------------KEGEREFQAEV 134
           YE + R  +      ++       FG V++                   +E   ++  E+
Sbjct: 1   YEHVTRDLNPEDFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEI 60

Query: 135 EIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGS 194
           +I++   H ++V L+  +   +   ++ EF     +   +    +P +       +   +
Sbjct: 61  DILASCDHPNIVKLLDAFYYENNLWILIEFCAGGAVDAVMLELERP-LTESQIQVVCKQT 119

Query: 195 AKGLAYLHD------DL--ANILLDFKFEAKVADFGLAKIASDVNTHVSTRV 238
              L YLHD      DL   NIL     + K+ADFG++   +       + +
Sbjct: 120 LDALNYLHDNKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQRRDSFI 171

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 98.6 bits (245), Expect = 3e-25
 Identities = 34/177 (19%), Positives = 62/177 (35%), Gaps = 20/177 (11%)

Query: 87  STFTYEELARATDGFSDANLLRQDGFGYVHRGVLPNGKE------------GEREFQAEV 134
           S+  Y++        +  + L    +G V+ GV                     EF  E 
Sbjct: 5   SSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEA 64

Query: 135 EIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGS 194
            ++  + H +LV L+G  T      ++ EF+    L+ +L    +  +     + +A   
Sbjct: 65  AVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQI 124

Query: 195 AKGLAYLHD------DL--ANILLDFKFEAKVADFGLAKIASDVNTHVSTRVMGTFG 243
           +  + YL        DL   N L+      KVADFGL+++ +               
Sbjct: 125 SSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIK 181

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.2 bits (241), Expect = 1e-24
 Identities = 36/166 (21%), Positives = 64/166 (38%), Gaps = 36/166 (21%)

Query: 111 GFGYVHRG----------VLPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYT----AGS 156
            FG V RG          +  + +E     +AE+     + H++++  +          +
Sbjct: 15  RFGEVWRGKWRGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWT 74

Query: 157 QRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHDDL----------- 205
           Q  LV ++  + +L  +L+      +     IK+AL +A GLA+LH ++           
Sbjct: 75  QLWLVSDYHEHGSLFDYLNRYT---VTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAH 131

Query: 206 -----ANILLDFKFEAKVADFGLAKI---ASDVNTHVSTRVMGTFG 243
                 NIL+       +AD GLA     A+D         +GT  
Sbjct: 132 RDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKR 177

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.1 bits (233), Expect = 1e-23
 Identities = 31/158 (19%), Positives = 57/158 (36%), Gaps = 27/158 (17%)

Query: 111 GFGYVHRGVLPNGKEG-----------------EREFQAEVEIISRVHHKHLVSLVGYYT 153
            FG VH+G+  + +                     +F  E   + +  H H+V L+G  T
Sbjct: 19  QFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT 78

Query: 154 AGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD------DL-- 205
                 ++ E      L        + ++D  + I  A   +  LAYL        D+  
Sbjct: 79  EN-PVWIIMELCTLGEL-RSFLQVRKYSLDLASLILYAYQLSTALAYLESKRFVHRDIAA 136

Query: 206 ANILLDFKFEAKVADFGLAKIASDVNTHVSTRVMGTFG 243
            N+L+      K+ DFGL++   D   + +++      
Sbjct: 137 RNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIK 174

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.0 bits (233), Expect = 1e-23
 Identities = 37/155 (23%), Positives = 63/155 (40%), Gaps = 26/155 (16%)

Query: 111 GFGYVHRGVLPNGKEG----------------EREFQAEVEIISRVHHKHLVSLVGYYTA 154
            FG V +GV    K+                   E   E +I+ ++ + ++V L+G    
Sbjct: 21  NFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQ- 79

Query: 155 GSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD------DL--A 206
               MLV E      L   L GK +  +      ++    + G+ YL +      DL   
Sbjct: 80  AEALMLVMEMAGGGPLHKFLVGKREE-IPVSNVAELLHQVSMGMKYLEEKNFVHRDLAAR 138

Query: 207 NILLDFKFEAKVADFGLAKIASDVNTHVSTRVMGT 241
           N+LL  +  AK++DFGL+K     +++ + R  G 
Sbjct: 139 NVLLVNRHYAKISDFGLSKALGADDSYYTARSAGK 173

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.5 bits (229), Expect = 4e-23
 Identities = 34/160 (21%), Positives = 59/160 (36%), Gaps = 30/160 (18%)

Query: 111 GFGYVHRGVLPNGKEGE-----------------REFQAEVEIISRVHHKHLVSLVGYYT 153
            FG V +G     K  +                  E  AE  ++ ++ + ++V ++G   
Sbjct: 19  NFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICE 78

Query: 154 AGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD------DL-- 205
           A S  MLV E      L  +L       +     I++    + G+ YL +      DL  
Sbjct: 79  AES-WMLVMEMAELGPLNKYLQQNRH--VKDKNIIELVHQVSMGMKYLEESNFVHRDLAA 135

Query: 206 ANILLDFKFEAKVADFGLAKIASDVNTHVSTR--VMGTFG 243
            N+LL  +  AK++DFGL+K       +   +        
Sbjct: 136 RNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVK 175

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.9 bits (230), Expect = 5e-23
 Identities = 34/178 (19%), Positives = 70/178 (39%), Gaps = 30/178 (16%)

Query: 93  ELARATDGFSDANLLRQDGFGYVHRGV-LPNGK-----------------EGEREFQAEV 134
            + + T+ F    +L    FG V++G+ +P G+                 +  +E   E 
Sbjct: 4   RILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 62

Query: 135 EIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGS 194
            +++ V + H+  L+G     +   L+ + +    L+ ++       +     +   +  
Sbjct: 63  YVMASVDNPHVCRLLGICLTST-VQLITQLMPFGCLLDYVREHKDN-IGSQYLLNWCVQI 120

Query: 195 AKGLAYL------HDDL--ANILLDFKFEAKVADFGLAK-IASDVNTHVSTRVMGTFG 243
           AKG+ YL      H DL   N+L+      K+ DFGLAK + ++   + +        
Sbjct: 121 AKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIK 178

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.0 bits (228), Expect = 5e-23
 Identities = 36/157 (22%), Positives = 56/157 (35%), Gaps = 29/157 (18%)

Query: 111 GFGYVHRGVLPNGKE----------------GEREFQAEVEIISRVHHKHLVSLVGYYTA 154
            FG V+       K                  E + + EVEI S + H +++ L GY+  
Sbjct: 18  KFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHD 77

Query: 155 GSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD------DL--A 206
            ++  L+ E+    T+   L    +   D           A  L+Y H       D+   
Sbjct: 78  ATRVYLILEYAPLGTVYRELQKLSK--FDEQRTATYITELANALSYCHSKRVIHRDIKPE 135

Query: 207 NILLDFKFEAKVADFGLAKIASDVNTHVSTRVMGTFG 243
           N+LL    E K+ADFG +  A          + GT  
Sbjct: 136 NLLLGSAGELKIADFGWSVHAPSSRRT---TLCGTLD 169

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 91.8 bits (227), Expect = 1e-22
 Identities = 36/203 (17%), Positives = 63/203 (31%), Gaps = 50/203 (24%)

Query: 91  YEELARATDGFSDANLLRQDGFGYVHRGVLPNG-------------------KEGEREFQ 131
              L    +       + +  FG V +   P                      + + +FQ
Sbjct: 5   LLSLEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQ 64

Query: 132 AEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQ------------ 179
            E  +++   + ++V L+G    G    L++E++    L   L                 
Sbjct: 65  REAALMAEFDNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLS 124

Query: 180 ----------PTMDWPTRIKIALGSAKGLAYLHD------DL--ANILLDFKFEAKVADF 221
                     P +    ++ IA   A G+AYL +      DL   N L+      K+ADF
Sbjct: 125 TRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHRDLATRNCLVGENMVVKIADF 184

Query: 222 GLAK-IASDVNTHVSTRVMGTFG 243
           GL++ I S               
Sbjct: 185 GLSRNIYSADYYKADGNDAIPIR 207

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.4 bits (226), Expect = 1e-22
 Identities = 38/162 (23%), Positives = 57/162 (35%), Gaps = 31/162 (19%)

Query: 111 GFGYVHRGVL--PNGK-----------------EGEREFQAEVEIISRVHHKHLVSLVGY 151
            FG V RG    P+GK                 E   +F  EV  +  + H++L+ L G 
Sbjct: 20  SFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGV 79

Query: 152 YTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHDD------- 204
                 +M V E     +L      K Q      T  + A+  A+G+ YL          
Sbjct: 80  VLTPPMKM-VTELAPLGSL-LDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESKRFIHRDL 137

Query: 205 -LANILLDFKFEAKVADFGLAKIASDVNTH--VSTRVMGTFG 243
              N+LL  +   K+ DFGL +     + H  +       F 
Sbjct: 138 AARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFA 179

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.2 bits (226), Expect = 1e-22
 Identities = 31/156 (19%), Positives = 57/156 (36%), Gaps = 25/156 (16%)

Query: 111 GFGYVHRGV--------------LPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGS 156
            +G V   V              +    +     + E+ I   ++H+++V   G+   G+
Sbjct: 17  AYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGN 76

Query: 157 QRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD------DL--ANI 208
            + L  E+     L   +       M  P   +       G+ YLH       D+   N+
Sbjct: 77  IQYLFLEYCSGGELFDRIEPDI--GMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENL 134

Query: 209 LLDFKFEAKVADFGLAK-IASDVNTHVSTRVMGTFG 243
           LLD +   K++DFGLA     +    +  ++ GT  
Sbjct: 135 LLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLP 170

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.6 bits (224), Expect = 4e-22
 Identities = 34/183 (18%), Positives = 63/183 (34%), Gaps = 50/183 (27%)

Query: 111 GFGYVHRGVLPNGKE-------------------GEREFQAEVEIISRV-HHKHLVSLVG 150
            FG V         +                         +E+++++++  H+++V+L+G
Sbjct: 49  AFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLG 108

Query: 151 YYTAGSQRMLVYEFVLNNTLVFHLHGKGQP---------------------TMDWPTRIK 189
             T      L++E+     L+ +L  K +                       + +   + 
Sbjct: 109 ACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLC 168

Query: 190 IALGSAKGLAYLHD------DL--ANILLDFKFEAKVADFGLAK-IASDVNTHVSTRVMG 240
            A   AKG+ +L        DL   N+L+      K+ DFGLA+ I SD N  V      
Sbjct: 169 FAYQVAKGMEFLEFKSCVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARL 228

Query: 241 TFG 243
              
Sbjct: 229 PVK 231

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.3 bits (223), Expect = 5e-22
 Identities = 41/178 (23%), Positives = 67/178 (37%), Gaps = 45/178 (25%)

Query: 111 GFGYVHRGVL------------------PNGKEGERE-FQAEVEIISRV-HHKHLVSLVG 150
            FG V                       P+    ERE   +E++++S + +H ++V+L+G
Sbjct: 35  AFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLG 94

Query: 151 YYTAGSQRMLVYEFVLNNTLVFHLHGKG----------------QPTMDWPTRIKIALGS 194
             T G   +++ E+     L+  L  K                 +  +D    +  +   
Sbjct: 95  ACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQV 154

Query: 195 AKGLAYLHD------DL--ANILLDFKFEAKVADFGLAK-IASDVNTHVSTRVMGTFG 243
           AKG+A+L        DL   NILL      K+ DFGLA+ I +D N  V         
Sbjct: 155 AKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVK 212

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.5 bits (221), Expect = 5e-22
 Identities = 32/171 (18%), Positives = 66/171 (38%), Gaps = 29/171 (16%)

Query: 101 FSDANLLRQDGFGYVHRGVLPNG------------------KEGEREFQAEVEIISRVHH 142
            +   ++    FG V++G+L                     ++   +F  E  I+ +  H
Sbjct: 9   VTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSH 68

Query: 143 KHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLH 202
            +++ L G  +     M++ E++  N  +     +          + +  G A G+ YL 
Sbjct: 69  HNIIRLEGVISKYKPMMIITEYM-ENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLA 127

Query: 203 D------DL--ANILLDFKFEAKVADFGLAKIASD--VNTHVSTRVMGTFG 243
           +      DL   NIL++     KV+DFGL+++  D    T+ ++       
Sbjct: 128 NMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIR 178

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.2 bits (213), Expect = 7e-21
 Identities = 33/163 (20%), Positives = 56/163 (34%), Gaps = 35/163 (21%)

Query: 111 GFGYVHRGVLPNG---------------KEGEREFQAEVEIISRVHHKHLVSLVGYYTAG 155
            F  V++G+                   K   + F+ E E++  + H ++V     + + 
Sbjct: 21  SFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWEST 80

Query: 156 SQR----MLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD-------- 203
            +     +LV E + + TL  +L       M             KGL +LH         
Sbjct: 81  VKGKKCIVLVTELMTSGTLKTYLKRFK--VMKIKVLRSWCRQILKGLQFLHTRTPPIIHR 138

Query: 204 DL--ANILLDFK-FEAKVADFGLAKIASDVNTHVSTRVMGTFG 243
           DL   NI +       K+ D GLA +        +  V+GT  
Sbjct: 139 DLKCDNIFITGPTGSVKIGDLGLATL---KRASFAKAVIGTPE 178

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.8 bits (214), Expect = 8e-21
 Identities = 36/178 (20%), Positives = 66/178 (37%), Gaps = 41/178 (23%)

Query: 105 NLLRQDGFGYVHRGVLPNG----------------KEGEREFQAEVEIISRV-HHKHLVS 147
           +++ +  FG V +  +                   K+  R+F  E+E++ ++ HH ++++
Sbjct: 16  DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIIN 75

Query: 148 LVGYYTAGSQRMLVYEFVLNNTLVFHLHGK--------------GQPTMDWPTRIKIALG 193
           L+G         L  E+  +  L+  L                    T+     +  A  
Sbjct: 76  LLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAAD 135

Query: 194 SAKGLAYL------HDDL--ANILLDFKFEAKVADFGLAKIASDVNTHVSTRVMGTFG 243
            A+G+ YL      H DL   NIL+   + AK+ADFGL++          T       
Sbjct: 136 VARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKK--TMGRLPVR 191

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.0 bits (212), Expect = 2e-20
 Identities = 38/168 (22%), Positives = 61/168 (36%), Gaps = 30/168 (17%)

Query: 105 NLLRQDGFGYVHRGVLPNGK-----------------EGEREFQAEVEIISRVHHKHLVS 147
            ++ +  FG V+ G L +                       +F  E  I+    H +++S
Sbjct: 33  EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLS 92

Query: 148 LVGY-YTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAY------ 200
           L+G    +    ++V  ++ +  L  +              I   L  AKG+ +      
Sbjct: 93  LLGICLRSEGSPLVVLPYMKHGDL-RNFIRNETHNPTVKDLIGFGLQVAKGMKFLASKKF 151

Query: 201 LHDDL--ANILLDFKFEAKVADFGLAKIASDVN---THVSTRVMGTFG 243
           +H DL   N +LD KF  KVADFGLA+   D      H  T       
Sbjct: 152 VHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVK 199

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.0 bits (210), Expect = 2e-20
 Identities = 35/181 (19%), Positives = 64/181 (35%), Gaps = 34/181 (18%)

Query: 95  ARATDGFSDANLLRQDGFGYVHRGV-LPNGK--------------EGEREFQAEVEIISR 139
           +RA D +     +    +G   +     +GK                ++   +EV ++  
Sbjct: 1   SRAED-YEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRE 59

Query: 140 VHHKHLVSLVGYYTAGSQRML--VYEFVLNNTLVFHLH--GKGQPTMDWPTRIKIALGSA 195
           + H ++V         +   L  V E+     L   +    K +  +D    +++     
Sbjct: 60  LKHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLT 119

Query: 196 KGLAYLHD-----------DL--ANILLDFKFEAKVADFGLAKIASDVNTHVSTRVMGTF 242
             L   H            DL  AN+ LD K   K+ DFGLA+I +  +T  +   +GT 
Sbjct: 120 LALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNH-DTSFAKAFVGTP 178

Query: 243 G 243
            
Sbjct: 179 Y 179

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.5 bits (206), Expect = 1e-19
 Identities = 28/149 (18%), Positives = 54/149 (36%), Gaps = 24/149 (16%)

Query: 111 GFGYVHRGV-LPNGKE------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQ 157
             G V+  + +  G+E             +     E+ ++    + ++V+ +  Y  G +
Sbjct: 32  ASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDE 91

Query: 158 RMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD------DL--ANIL 209
             +V E++   +L   +       MD      +     + L +LH       D+   NIL
Sbjct: 92  LWVVMEYLAGGSLTDVVTETC---MDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNIL 148

Query: 210 LDFKFEAKVADFGLAKIASDVNTHVSTRV 238
           L      K+ DFG     +   +  ST V
Sbjct: 149 LGMDGSVKLTDFGFCAQITPEQSKRSTMV 177

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 83.6 bits (206), Expect = 2e-19
 Identities = 33/152 (21%), Positives = 59/152 (38%), Gaps = 24/152 (15%)

Query: 111 GFGYVHRG-------------VLPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQ 157
            FG VHR              V+   +  +   + E++ +S + H  LV+L   +   ++
Sbjct: 38  AFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNE 97

Query: 158 RMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD------DL--ANIL 209
            +++YEF+    L   +  +    M     ++      KGL ++H+      DL   NI+
Sbjct: 98  MVMIYEFMSGGELFEKVADEHNK-MSEDEAVEYMRQVCKGLCHMHENNYVHLDLKPENIM 156

Query: 210 LDFKF--EAKVADFGLAKIASDVNTHVSTRVM 239
              K   E K+ DFGL        +   T   
Sbjct: 157 FTTKRSNELKLIDFGLTAHLDPKQSVKVTTGT 188

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 82.1 bits (202), Expect = 8e-19
 Identities = 36/164 (21%), Positives = 58/164 (35%), Gaps = 29/164 (17%)

Query: 99  DGFSDANLLRQDGFGYVHRGVLP----------------NGKEGEREFQAEVEIISRVH- 141
           + FS   ++ + GFG V+                       K+GE     E  ++S V  
Sbjct: 4   NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVST 63

Query: 142 --HKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLA 199
                +V +   +    +   + + +    L +HL   G            A     GL 
Sbjct: 64  GDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQHGV--FSEADMRFYAAEIILGLE 121

Query: 200 YLHD------DL--ANILLDFKFEAKVADFGLAKIASDVNTHVS 235
           ++H+      DL  ANILLD     +++D GLA   S    H S
Sbjct: 122 HMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHAS 165

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 81.3 bits (200), Expect = 1e-18
 Identities = 33/155 (21%), Positives = 59/155 (38%), Gaps = 24/155 (15%)

Query: 111 GFGYVHRGV-LPNGKE------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQ 157
            FG VHR V    G+              +   + E+ I++++HH  L++L   +    +
Sbjct: 41  AFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYE 100

Query: 158 RMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANIL 209
            +L+ EF+    L   +  +    M     I     + +GL ++H+           NI+
Sbjct: 101 MVLILEFLSGGELFDRIAAEDYK-MSEAEVINYMRQACEGLKHMHEHSIVHLDIKPENIM 159

Query: 210 LDFKF--EAKVADFGLAKIASDVNTHVSTRVMGTF 242
            + K     K+ DFGLA   +       T     F
Sbjct: 160 CETKKASSVKIIDFGLATKLNPDEIVKVTTATAEF 194

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.5 bits (198), Expect = 2e-18
 Identities = 20/150 (13%), Positives = 53/150 (35%), Gaps = 23/150 (15%)

Query: 111 GFGYVHRG------------VLPNGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQR 158
            FG VHR              +      +   + E+ I++   H++++ L   + +  + 
Sbjct: 17  EFGIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEISILNIARHRNILHLHESFESMEEL 76

Query: 159 MLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILL 210
           ++++EF+    +   ++      ++    +       + L +LH            NI+ 
Sbjct: 77  VMIFEFISGLDIFERINTSAFE-LNEREIVSYVHQVCEALQFLHSHNIGHFDIRPENIIY 135

Query: 211 DFKFEA--KVADFGLAKIASDVNTHVSTRV 238
             +  +  K+ +FG A+     +       
Sbjct: 136 QTRRSSTIKIIEFGQARQLKPGDNFRLLFT 165

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.4 bits (192), Expect = 9e-18
 Identities = 38/177 (21%), Positives = 57/177 (32%), Gaps = 44/177 (24%)

Query: 111 GFGYVHRGVLPNG-------------------KEGEREFQAEVEIISR-VHHKHLVSLVG 150
            FG V                               R   +E++I+    HH ++V+L+G
Sbjct: 25  AFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLG 84

Query: 151 YYT-AGSQRMLVYEFVLNNTLVFHLHGKG--------------QPTMDWPTRIKIALGSA 195
             T  G   M++ EF     L  +L  K               +  +     I  +   A
Sbjct: 85  ACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVA 144

Query: 196 KGLAYLHD------DL--ANILLDFKFEAKVADFGLAKIASDVNTHV-STRVMGTFG 243
           KG+ +L        DL   NILL  K   K+ DFGLA+       +V          
Sbjct: 145 KGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLK 201

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 76.3 bits (187), Expect = 4e-17
 Identities = 32/129 (24%), Positives = 49/129 (37%), Gaps = 13/129 (10%)

Query: 124 KEGEREFQAEVEIISRVH-HKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTM 182
           +E       EV+I+ +V  H +++ L   Y   +   LV++ +    L  +L  K   T+
Sbjct: 50  QELREATLKEVDILRKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTEKV--TL 107

Query: 183 DWPTRIKIALGSAKGLAYLHD------DL--ANILLDFKFEAKVADFGLAKIASDVNTHV 234
                 KI     + +  LH       DL   NILLD     K+ DFG +          
Sbjct: 108 SEKETRKIMRALLEVICALHKLNIVHRDLKPENILLDDDMNIKLTDFGFSCQLDP--GEK 165

Query: 235 STRVMGTFG 243
              V GT  
Sbjct: 166 LREVCGTPS 174

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 74.9 bits (183), Expect = 1e-16
 Identities = 29/154 (18%), Positives = 57/154 (37%), Gaps = 24/154 (15%)

Query: 111 GFGYVHRGVLPNGKE--------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGS 156
            +G V++     G+                      E+ I+  + H ++V L        
Sbjct: 14  TYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKK 73

Query: 157 QRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHDD--------LANI 208
           + +LV+E +  +        +G   ++  T     L    G+AY HD           N+
Sbjct: 74  RLVLVFEHLDQDLKKLLDVCEGG--LESVTAKSFLLQLLNGIAYCHDRRVLHRDLKPQNL 131

Query: 209 LLDFKFEAKVADFGLAKIASDVNTHVSTRVMGTF 242
           L++ + E K+ADFGLA+         +  ++  +
Sbjct: 132 LINREGELKIADFGLARAFGIPVRKYTHEIVTLW 165

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 75.1 bits (184), Expect = 2e-16
 Identities = 32/164 (19%), Positives = 56/164 (34%), Gaps = 29/164 (17%)

Query: 105 NLLRQDGFGYVHRGV-LPNGKE-------------GEREFQAEVEIISRVHHKHLVSLVG 150
           ++L    F  V         K               E   + E+ ++ ++ H ++V+L  
Sbjct: 15  DVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKIKHPNIVALDD 74

Query: 151 YYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHDD------ 204
            Y +G    L+ + V    L   +  KG          ++       + YLHD       
Sbjct: 75  IYESGGHLYLIMQLVSGGELFDRIVEKG--FYTERDASRLIFQVLDAVKYLHDLGIVHRD 132

Query: 205 -----LANILLDFKFEAKVADFGLAKIASDVNTHVSTRVMGTFG 243
                L    LD   +  ++DFGL+K+       V +   GT G
Sbjct: 133 LKPENLLYYSLDEDSKIMISDFGLSKMEDP--GSVLSTACGTPG 174

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.2 bits (184), Expect = 2e-16
 Identities = 31/165 (18%), Positives = 61/165 (36%), Gaps = 27/165 (16%)

Query: 101 FSDANLLRQDGFGYVHRGVLPNGKE---------GEREFQAEVEIISRVHHKHLVSLVGY 151
           ++D  ++    FG V++  L +  E          +R    E++I+ ++ H ++V L  +
Sbjct: 22  YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYF 81

Query: 152 YTAGSQRM------LVYEFVLNNTLVFHLH-GKGQPTMDWPTRIKIALGSAKGLAYLHDD 204
           + +  ++       LV ++V         H  + + T+             + LAY+H  
Sbjct: 82  FYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIH-S 140

Query: 205 LANILLDFKFEA----------KVADFGLAKIASDVNTHVSTRVM 239
                 D K +           K+ DFG AK       +VS    
Sbjct: 141 FGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICS 185

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.9 bits (183), Expect = 2e-16
 Identities = 32/169 (18%), Positives = 56/169 (33%), Gaps = 36/169 (21%)

Query: 111 GFGYVHRGVLPN-------------------GKEGEREFQAEVEIISRVHHKHLVSLVGY 151
            FG V+ GV                            EF  E  ++   +  H+V L+G 
Sbjct: 32  SFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGV 91

Query: 152 YTAGSQRMLVYEFVLNNTLVFHLHGKGQ--------PTMDWPTRIKIALGSAKGLAYL-- 201
            + G   +++ E +    L  +L                     I++A   A G+AYL  
Sbjct: 92  VSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNA 151

Query: 202 ----HDDL--ANILLDFKFEAKVADFGLAKIASDVN-THVSTRVMGTFG 243
               H DL   N ++   F  K+ DFG+ +   + +      + +    
Sbjct: 152 NKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVR 200

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.1 bits (179), Expect = 5e-16
 Identities = 32/168 (19%), Positives = 52/168 (30%), Gaps = 26/168 (15%)

Query: 96  RATDGFSDANLLRQDGFGYVHRGV-LPNGKE---------------GEREFQAEVEIISR 139
           +  + F    +L +  F  V     L   +E                      E +++SR
Sbjct: 5   KRPEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSR 64

Query: 140 VHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLA 199
           + H   V L   +    +      +  N  L+ ++   G    D              L 
Sbjct: 65  LDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGS--FDETCTRFYTAEIVSALE 122

Query: 200 YLHD------DL--ANILLDFKFEAKVADFGLAKIASDVNTHVSTRVM 239
           YLH       DL   NILL+     ++ DFG AK+ S  +        
Sbjct: 123 YLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSF 170

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.2 bits (176), Expect = 2e-15
 Identities = 35/164 (21%), Positives = 63/164 (38%), Gaps = 28/164 (17%)

Query: 105 NLLRQDGFGYVHRGVLPNGKE------------------GEREFQAEVEIISRVHHKHLV 146
           + L +  F  V++    N  +                    R    E++++  + H +++
Sbjct: 4   DFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNII 63

Query: 147 SLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--- 203
            L+  +   S   LV++F+  +  V          +         L + +GL YLH    
Sbjct: 64  GLLDAFGHKSNISLVFDFMETDLEVIIKDNSLV--LTPSHIKAYMLMTLQGLEYLHQHWI 121

Query: 204 ---DL--ANILLDFKFEAKVADFGLAKIASDVNTHVSTRVMGTF 242
              DL   N+LLD     K+ADFGLAK     N   + +V+  +
Sbjct: 122 LHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNRAYTHQVVTRW 165

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.4 bits (174), Expect = 3e-15
 Identities = 31/173 (17%), Positives = 60/173 (34%), Gaps = 44/173 (25%)

Query: 111 GFGYVHRGVLPNG---------------------KEGEREFQAEVEIISRV-HHKHLVSL 148
            FG V                             ++   +  +E+E++  +  HK++++L
Sbjct: 25  AFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINL 84

Query: 149 VGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQP--------------TMDWPTRIKIALGS 194
           +G  T      ++ E+     L  +L  +  P               +     +  A   
Sbjct: 85  LGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQV 144

Query: 195 AKGLAYLHD------DL--ANILLDFKFEAKVADFGLAKIASDVNTHVSTRVM 239
           A+G+ YL        DL   N+L+      K+ADFGLA+    ++ +  T   
Sbjct: 145 ARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNG 197

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.1 bits (173), Expect = 3e-15
 Identities = 29/167 (17%), Positives = 62/167 (37%), Gaps = 24/167 (14%)

Query: 99  DGFSDANLLRQDGFGYVHRGVLP---------------NGKEGEREFQAEVEIISRVHHK 143
           + F     + +  +G V++                     +        E+ ++  ++H 
Sbjct: 2   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 61

Query: 144 HLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL-- 201
           ++V L+      ++  LV+EF+ +  L   +       +  P          +GLA+   
Sbjct: 62  NIVKLLDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHS 120

Query: 202 ----HDDL--ANILLDFKFEAKVADFGLAKIASDVNTHVSTRVMGTF 242
               H DL   N+L++ +   K+ADFGLA+         +  V+  +
Sbjct: 121 HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLW 167

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.3 bits (174), Expect = 4e-15
 Identities = 29/150 (19%), Positives = 51/150 (34%), Gaps = 24/150 (16%)

Query: 111 GFGYVHRGV-LPNGKE-------GEREFQAEVEIISRV-HHKHLVSLVGYY----TAGSQ 157
             G V +       ++          + + EVE+  R     H+V +V  Y         
Sbjct: 24  INGKVLQIFNKRTQEKFALKMLQDCPKARREVELHWRASQCPHIVRIVDVYENLYAGRKC 83

Query: 158 RMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD------DL--ANIL 209
            ++V E +    L   +  +G          +I     + + YLH       D+   N+L
Sbjct: 84  LLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLL 143

Query: 210 LDFKFE---AKVADFGLAKIASDVNTHVST 236
              K      K+ DFG AK  +  N+  + 
Sbjct: 144 YTSKRPNAILKLTDFGFAKETTSHNSLTTP 173

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.4 bits (174), Expect = 4e-15
 Identities = 29/167 (17%), Positives = 59/167 (35%), Gaps = 33/167 (19%)

Query: 98  TDGFSDANLLRQDGFGYVHRGVLP--------------NGKEGEREFQAEVEIISRVHHK 143
              +++ + + +  +G V                      +   +    E++I+ R  H+
Sbjct: 7   GPRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHE 66

Query: 144 HLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKG------QPTMDWPTRIKIALGSAKG 197
           +++ +     A +   +   +     LV HL G           +             +G
Sbjct: 67  NIIGINDIIRAPTIEQMKDVY-----LVTHLMGADLYKLLKTQHLSNDHICYFLYQILRG 121

Query: 198 LAYLHD------DLA--NILLDFKFEAKVADFGLAKIASDVNTHVST 236
           L Y+H       DL   N+LL+   + K+ DFGLA++A   + H   
Sbjct: 122 LKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGF 168

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 68.2 bits (166), Expect = 3e-14
 Identities = 36/163 (22%), Positives = 61/163 (37%), Gaps = 32/163 (19%)

Query: 111 GFGYVHRGV----------------LPNGKEGEREFQAEVEIISRVHHKHLVSLVGYY-- 152
           G   VH                   L         F+ E +  + ++H  +V++      
Sbjct: 19  GMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEA 78

Query: 153 --TAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD------D 204
              AG    +V E+V   TL   +H +G   M     I++   + + L + H       D
Sbjct: 79  ETPAGPLPYIVMEYVDGVTLRDIVHTEGP--MTPKRAIEVIADACQALNFSHQNGIIHRD 136

Query: 205 L--ANILLDFKFEAKVADFGLAKIASDVNTHV--STRVMGTFG 243
           +  ANI++      KV DFG+A+  +D    V  +  V+GT  
Sbjct: 137 VKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQ 179

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.1 bits (163), Expect = 9e-14
 Identities = 32/158 (20%), Positives = 48/158 (30%), Gaps = 28/158 (17%)

Query: 111 GFGYVHRGVLPN----------------GKEGEREFQAEVEIISRV-HHKHLVSLVGYYT 153
            FG V                         +       E  ++S    H  L  +   + 
Sbjct: 14  SFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQ 73

Query: 154 AGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DL 205
                  V E++    L++H+    +   D       A     GL +LH          L
Sbjct: 74  TKENLFFVMEYLNGGDLMYHIQSCHK--FDLSRATFYAAEIILGLQFLHSKGIVYRDLKL 131

Query: 206 ANILLDFKFEAKVADFGLAKIASDVNTHVSTRVMGTFG 243
            NILLD     K+ADFG+ K     +   +T   GT  
Sbjct: 132 DNILLDKDGHIKIADFGMCKENMLGDAKTNTFC-GTPD 168

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 66.4 bits (161), Expect = 1e-13
 Identities = 23/156 (14%), Positives = 43/156 (27%), Gaps = 27/156 (17%)

Query: 111 GFGYVHRGV-LPNGKE----------GEREFQAEVEIISRV-HHKHLVSLVGYYTAGSQR 158
            FG +  G  L N ++             + + E      +     + ++  +   G   
Sbjct: 17  SFGVIFEGTNLLNNQQVAIKFEPRRSDAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHN 76

Query: 159 MLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD------DL--ANILL 210
           +LV + +     +  L           T    A      +  +H+      D+   N L+
Sbjct: 77  VLVIDLL--GPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIHEKSLVYRDIKPDNFLI 134

Query: 211 DFKF-----EAKVADFGLAKIASDVNTHVSTRVMGT 241
                       V DFG+ K   D  T         
Sbjct: 135 GRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREK 170

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.4 bits (161), Expect = 2e-13
 Identities = 37/179 (20%), Positives = 60/179 (33%), Gaps = 33/179 (18%)

Query: 96  RATDGFSDANLLRQDGFGYVHRGV-LPNGKE---------------GEREFQAEVEI--- 136
           RA   +     + +  +G V +   L NG                        EV +   
Sbjct: 4   RADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRH 63

Query: 137 ISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLV----FHLHGKGQPTMDWPTRIKIAL 192
           +    H ++V L    T           ++   +      +L    +P +   T   +  
Sbjct: 64  LETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMF 123

Query: 193 GSAKGLAYLHD------DL--ANILLDFKFEAKVADFGLAKIASDVNTHVSTRVMGTFG 243
              +GL +LH       DL   NIL+    + K+ADFGLA+I S       T V+ T  
Sbjct: 124 QLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMAL--TSVVVTLW 180

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.3 bits (161), Expect = 2e-13
 Identities = 35/148 (23%), Positives = 50/148 (33%), Gaps = 26/148 (17%)

Query: 111 GFGYVHRGV-LPNGK---------------EGEREFQAEVEIISRVHHKHLVSLVGYYTA 154
            FG VH      NG+               +       E  ++S V H  ++ + G +  
Sbjct: 16  SFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQD 75

Query: 155 GSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD------DL--A 206
             Q  ++ +++    L   L          P     A      L YLH       DL   
Sbjct: 76  AQQIFMIMDYIEGGELFSLLRKS--QRFPNPVAKFYAAEVCLALEYLHSKDIIYRDLKPE 133

Query: 207 NILLDFKFEAKVADFGLAKIASDVNTHV 234
           NILLD     K+ DFG AK   DV   +
Sbjct: 134 NILLDKNGHIKITDFGFAKYVPDVTYTL 161

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.7 bits (159), Expect = 3e-13
 Identities = 30/156 (19%), Positives = 55/156 (35%), Gaps = 25/156 (16%)

Query: 111 GFGYVHRGVLP---------------NGKEGEREFQAEVEIISRVHHKHLVSLVGYYTAG 155
            +G V +                   + +        E+ ++  + HK++V L     + 
Sbjct: 14  TYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSD 73

Query: 156 SQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD------DL--AN 207
            +  LV+EF   +   +     G   +D            KGL + H       DL   N
Sbjct: 74  KKLTLVFEFCDQDLKKYFDSCNGD--LDPEIVKSFLFQLLKGLGFCHSRNVLHRDLKPQN 131

Query: 208 ILLDFKFEAKVADFGLAKIASDVNTHVSTRVMGTFG 243
           +L++   E K+A+FGLA+         S  V+  + 
Sbjct: 132 LLINRNGELKLANFGLARAFGIPVRCYSAEVVTLWY 167

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.1 bits (158), Expect = 3e-13
 Identities = 28/163 (17%), Positives = 53/163 (32%), Gaps = 34/163 (20%)

Query: 111 GFGYVHRGV-LPNGK------------------EGEREFQAEVEIISRVHHKH--LVSLV 149
           GFG V+ G+ + +                            EV ++ +V      ++ L+
Sbjct: 16  GFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLL 75

Query: 150 GYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL------HD 203
            ++      +L+ E       +F    +    +             + + +       H 
Sbjct: 76  DWFERPDSFVLILERPEPVQDLFDFITERGA-LQEELARSFFWQVLEAVRHCHNCGVLHR 134

Query: 204 DL--ANILLDF-KFEAKVADFGLAKIASDVNTHVSTRVMGTFG 243
           D+   NIL+D  + E K+ DFG   +  D    V T   GT  
Sbjct: 135 DIKDENILIDLNRGELKLIDFGSGALLKD---TVYTDFDGTRV 174

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.3 bits (158), Expect = 4e-13
 Identities = 32/164 (19%), Positives = 59/164 (35%), Gaps = 33/164 (20%)

Query: 111 GFGYVHRGV-LPNGKE--------------GEREFQAEVEIISRVHHKHLVSLVGYYTAG 155
            FG V +      G++                     E++I+  + H+++V+L+      
Sbjct: 22  TFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTK 81

Query: 156 SQRM--------LVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYL------ 201
           +           LV++F  ++      +   + T+    R+   L    GL Y+      
Sbjct: 82  ASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQML--LNGLYYIHRNKIL 139

Query: 202 HDDL--ANILLDFKFEAKVADFGLAKIASDVNTHVSTRVMGTFG 243
           H D+  AN+L+      K+ADFGLA+  S        R      
Sbjct: 140 HRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVV 183

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.2 bits (158), Expect = 6e-13
 Identities = 32/184 (17%), Positives = 63/184 (34%), Gaps = 30/184 (16%)

Query: 86  KSTFTYEELARATDGFSDA----NLLRQDGFGYVHRGVLP---------------NGKEG 126
           +S F  +E+ +              +    +G V   V                   +  
Sbjct: 1   RSGFYRQEVTKTAWEVRAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELF 60

Query: 127 EREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGK--GQPTMDW 184
            +    E+ ++  + H++++ L+  +T         +F L    +    GK      +  
Sbjct: 61  AKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFTDFYLVMPFMGTDLGKLMKHEKLGE 120

Query: 185 PTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIA-SDVNTHVS 235
                +     KGL Y+H            N+ ++   E K+ DFGLA+ A S++  +V 
Sbjct: 121 DRIQFLVYQMLKGLRYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLARQADSEMTGYVV 180

Query: 236 TRVM 239
           TR  
Sbjct: 181 TRWY 184

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 64.5 bits (156), Expect = 8e-13
 Identities = 26/153 (16%), Positives = 48/153 (31%), Gaps = 23/153 (15%)

Query: 111 GFGYVHRGV-LPNGKE----------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRM 159
            FG ++ G  +  G+E             +   E +I   +     +  + +  A     
Sbjct: 19  SFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYN 78

Query: 160 LVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD------DLA--NIL-- 209
           ++   +L  +L    +   +      T + +A      + Y+H       D+   N L  
Sbjct: 79  VMVMELLGPSLEDLFNFCSRK-FSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMG 137

Query: 210 -LDFKFEAKVADFGLAKIASDVNTHVSTRVMGT 241
                    + DFGLAK   D  TH        
Sbjct: 138 LGKKGNLVYIIDFGLAKKYRDARTHQHIPYREN 170

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.5 bits (151), Expect = 3e-12
 Identities = 34/164 (20%), Positives = 54/164 (32%), Gaps = 35/164 (21%)

Query: 111 GFGYVHRGV-LPNGKE------------------GEREFQAEVEIISRVHHKHLVSLVGY 151
            F  V +      G +                     + + EV I+  + H ++++L   
Sbjct: 22  QFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEV 81

Query: 152 YTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD------DL 205
           Y   +  +L+ E V    L   L  K   ++      +       G+ YLH       DL
Sbjct: 82  YENKTDVILILELVAGGELFDFLAEKE--SLTEEEATEFLKQILNGVYYLHSLQIAHFDL 139

Query: 206 --ANILLD----FKFEAKVADFGLAKIASDVNTHVSTRVMGTFG 243
              NI+L      K   K+ DFGLA      N      + GT  
Sbjct: 140 KPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEF--KNIFGTPE 181

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.8 bits (144), Expect = 3e-11
 Identities = 33/148 (22%), Positives = 47/148 (31%), Gaps = 26/148 (17%)

Query: 111 GFGYVHRGV-LPNGK---------------EGEREFQAEVEIISRVHHKHLVSLVGYYTA 154
            FG V       +G                +       E  I+  V+   LV L   +  
Sbjct: 53  SFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKD 112

Query: 155 GSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD------DL--A 206
            S   +V E+V    +  HL   G+     P     A        YLH       DL   
Sbjct: 113 NSNLYMVMEYVAGGEMFSHLRRIGR--FSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPE 170

Query: 207 NILLDFKFEAKVADFGLAKIASDVNTHV 234
           N+L+D +   +V DFG AK        +
Sbjct: 171 NLLIDQQGYIQVTDFGFAKRVKGRTWTL 198

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.4 bits (143), Expect = 5e-11
 Identities = 31/167 (18%), Positives = 48/167 (28%), Gaps = 27/167 (16%)

Query: 99  DGFSDANLLRQDGFGYVHRGV----------------LPNGKEGEREFQAEVEIISRVHH 142
           + F    LL +  FG V                    +   K+       E  ++    H
Sbjct: 5   NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRH 64

Query: 143 KHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAY-- 200
             L +L   +    +   V E+     L FHL  +                    L Y  
Sbjct: 65  PFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRE--RVFTEERARFYGAEIVSALEYLH 122

Query: 201 ----LHDDL--ANILLDFKFEAKVADFGLAKIASDVNTHVSTRVMGT 241
               ++ D+   N++LD     K+ DFGL K              GT
Sbjct: 123 SRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGAT-MKTFCGT 168

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.2 bits (137), Expect = 3e-10
 Identities = 26/133 (19%), Positives = 52/133 (39%), Gaps = 7/133 (5%)

Query: 115 VHRGVLPNGKEGEREFQAEVEIISRV-HHKHLVSLVGYYTAGSQRMLVYEFVLNNTLVFH 173
           + +  +    +     + E +++  +     LV+L   +   ++  L+ +++    L  H
Sbjct: 60  LKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETKLHLILDYINGGELFTH 119

Query: 174 LHGKGQPTMDWPTR----IKIALGSAKGLAYLHDDL--ANILLDFKFEAKVADFGLAKIA 227
           L  + + T          I +AL     L  ++ D+   NILLD      + DFGL+K  
Sbjct: 120 LSQRERFTEHEVQIYVGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEF 179

Query: 228 SDVNTHVSTRVMG 240
               T  +    G
Sbjct: 180 VADETERAYDFCG 192

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (117), Expect = 1e-07
 Identities = 29/155 (18%), Positives = 55/155 (35%), Gaps = 26/155 (16%)

Query: 111 GFGYVHRGV-LPNGKE--------------GEREFQAEVEIISRVHHKHLVSLVGYYTAG 155
             G V         +                 +    E+ ++  V+HK+++SL+  +T  
Sbjct: 29  AQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQ 88

Query: 156 SQRMLVYEFVLNNTLVFHLHGK-GQPTMDWPTRIKIALGSAKGLAYLHD------DL--A 206
                  +  L   L+     +  Q  +D      +      G+ +LH       DL  +
Sbjct: 89  KTLEEFQDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPS 148

Query: 207 NILLDFKFEAKVADFGLAKIASDVNTHVSTRVMGT 241
           NI++      K+ DFGLA+ A    + + T  + T
Sbjct: 149 NIVVKSDCTLKILDFGLARTAGT--SFMMTPYVVT 181

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 48.6 bits (115), Expect = 1e-07
 Identities = 20/156 (12%), Positives = 39/156 (25%), Gaps = 34/156 (21%)

Query: 105 NLLRQDGFGYVHRGVLPNGKE----------------------GEREFQAEVEIISRVHH 142
            L+ +     V         E                      G+  F       +R   
Sbjct: 6   KLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEF 65

Query: 143 KHLVSLVGYYTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLH 202
           + L  L G          VY +  N  L+  +  K    +      ++     + +A  +
Sbjct: 66  RALQKLQGLAV-----PKVYAWEGNAVLMELIDAKELYRVRVENPDEVLDMILEEVAKFY 120

Query: 203 D------DL-ANILLDFKFEAKVADFGLAKIASDVN 231
                  DL    +L  +    + DF  +    +  
Sbjct: 121 HRGIVHGDLSQYNVLVSEEGIWIIDFPQSVEVGEEG 156

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (107), Expect = 2e-06
 Identities = 26/179 (14%), Positives = 61/179 (34%), Gaps = 33/179 (18%)

Query: 86  KSTFTYEELARA----TDGFSDANLLRQDGFGYVHRGV-LPNGKE--------------G 126
           + TF  +EL +      + + + + +    +G V        G                 
Sbjct: 1   RPTFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIH 60

Query: 127 EREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVL----NNTLVFHLHGKGQPTM 182
            +    E+ ++  + H++++ L+  +T         +  L        + ++    +  +
Sbjct: 61  AKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQK--L 118

Query: 183 DWPTRIKIALGSAKGLAYLHDD--------LANILLDFKFEAKVADFGLAKIASDVNTH 233
                  +     +GL Y+H           +N+ ++   E K+ DFGLA+   D  T 
Sbjct: 119 TDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTG 177

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	243
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	100.0
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	99.98
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	99.97
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	99.97
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	99.97
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	99.97
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	99.97
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	99.97
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	99.97
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	99.97
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	99.97
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	99.97
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	99.97
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	99.97
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	99.97
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	99.97
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	99.97
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	99.97
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	99.97
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	99.97
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	99.96
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	99.96
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	99.96
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	99.96
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	99.96
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	99.96
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	99.96
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	99.96
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	99.96
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	99.96
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	99.96
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	99.96
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	99.96
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	99.96
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	99.95
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	99.95
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	99.95
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	99.95
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	99.95
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.95
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	99.95
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	99.94
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	99.94
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	99.94
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	99.94
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	99.94
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	99.94
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	99.94
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	99.93
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	99.93
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	99.93
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	99.93
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	99.93
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	99.92
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	99.92
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	99.91
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	99.91
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	99.9
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	99.9
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.76
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	99.74
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	98.13
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	97.09
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	96.76
d1nw1a_	395	Choline kinase {Caenorhabditis elegans [TaxId: 623	93.97
d2ppqa1	316	Homoserine kinase ThrB {Agrobacterium tumefaciens	86.5

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-33  Score=228.31  Aligned_cols=142  Identities=23%  Similarity=0.340  Sum_probs=122.2

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch--------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEec
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE--------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEF  164 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~--------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  164 (243)
                      ++|++.+.||+|+||.||+|+++.+.+              ..+.+.+|+++|++++|||||++++++.+++.+||||||
T Consensus         5 ~dy~~~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~~~~~~~~~~~~~ivmEy   84 (271)
T d1nvra_           5 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEY   84 (271)
T ss_dssp             TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             cceEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHhCCCCCEeeEeeeeccCceeEEEEec
Confidence            689999999999999999998765432              345688999999999999999999999999999999999


Q ss_pred             cCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCc-eee
Q 039406          165 VLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNT-HVS  235 (243)
Q Consensus       165 ~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~-~~~  235 (243)
                      |++|+|.+++...+  .+++..++.++.|++.||.|||.        ||+|||++.++++||+|||+|+.+..... ...
T Consensus        85 ~~gg~L~~~l~~~~--~l~e~~~~~i~~qi~~al~ylH~~~IiHrDiKp~NILl~~~~~~KL~DFG~a~~~~~~~~~~~~  162 (271)
T d1nvra_          85 CSGGELFDRIEPDI--GMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLL  162 (271)
T ss_dssp             CTTEEGGGGSBTTT--BCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCCTTCEECEETTEECCB
T ss_pred             cCCCcHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHHcCCccCcccHHHEEECCCCCEEEccchhheeeccCCccccc
Confidence            99999999997544  59999999999999999999976        56999999999999999999998754432 233


Q ss_pred             ecccccc
Q 039406          236 TRVMGTF  242 (243)
Q Consensus       236 ~~~~GT~  242 (243)
                      +..+||+
T Consensus       163 ~~~~GT~  169 (271)
T d1nvra_         163 NKMCGTL  169 (271)
T ss_dssp             CCCCSCG
T ss_pred             cceeeCc
Confidence            4568886

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=5.7e-32  Score=223.37  Aligned_cols=140  Identities=18%  Similarity=0.263  Sum_probs=122.4

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch-------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEecc
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE-------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFV  165 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~-------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~  165 (243)
                      ++|++.+.||+|+||.||+|+++.+.+             ..+.+.+|+.+|++++|||||+++++|.+.+.+|||||||
T Consensus        20 ~~Y~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmEy~   99 (293)
T d1yhwa1          20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYL   99 (293)
T ss_dssp             TTBCSCEECCCSSSCEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             cccEEEEEEecCcCcEEEEEEECCCCCEEEEEEEecccChHHHHHHHHHHHHHhCCCCCEeeEeEEEEECCEEEEEEEec
Confidence            469999999999999999998765432             4567899999999999999999999999999999999999


Q ss_pred             CCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCceeeec
Q 039406          166 LNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNTHVSTR  237 (243)
Q Consensus       166 ~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~~~~~~  237 (243)
                      +||+|.+++...   .+++..++.++.|++.||.|||.        ||+|||++.++++||+|||+|+.+..... ....
T Consensus       100 ~gg~L~~~~~~~---~l~~~~~~~i~~qi~~aL~yLH~~~iiHrDiKp~NILl~~~~~vkl~DFG~a~~~~~~~~-~~~~  175 (293)
T d1yhwa1         100 AGGSLTDVVTET---CMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQS-KRST  175 (293)
T ss_dssp             TTCBHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSTTC-CBCC
T ss_pred             CCCcHHHHhhcc---CCCHHHHHHHHHHHHHHHHHHHHCCCcccCCcHHHeEECCCCcEeeccchhheeeccccc-cccc
Confidence            999999988654   49999999999999999999976        56999999999999999999998865443 2334


Q ss_pred             ccccc
Q 039406          238 VMGTF  242 (243)
Q Consensus       238 ~~GT~  242 (243)
                      .+||+
T Consensus       176 ~~gt~  180 (293)
T d1yhwa1         176 MVGTP  180 (293)
T ss_dssp             CCSCG
T ss_pred             cccCC
Confidence            67876

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=3.3e-33  Score=230.33  Aligned_cols=145  Identities=21%  Similarity=0.264  Sum_probs=125.0

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCc------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEecc
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGK------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFV  165 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~  165 (243)
                      .++|++.+.||+|+||.||+|+++.+.            ...+.|.+|+.+|++++|||||+++++|.+++.+|||||||
T Consensus        16 ~~~~~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~iv~E~~   95 (287)
T d1opja_          16 RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFM   95 (287)
T ss_dssp             GGGEEEEEETTTTTTSSEEEEEEGGGTEEEEEEECCTTCSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECC
T ss_pred             HHHeEEeeEEeeCCCeEEEEEEECCCCeEEEEEEECCccchHHHHHHHHHHHHhCCCCCEecCCccEeeCCeeEEEeecc
Confidence            467888999999999999999876432            24678999999999999999999999999999999999999


Q ss_pred             CCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCceeeec
Q 039406          166 LNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNTHVSTR  237 (243)
Q Consensus       166 ~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~~~~~~  237 (243)
                      ++|+|.+++.......+++..++.++.|++.||.|||.        ||+||||+.++++||+|||+|+..........+.
T Consensus        96 ~~g~l~~~l~~~~~~~~~~~~~~~i~~qi~~gL~yLH~~~iiHrDlKp~NILl~~~~~~Kl~DFG~a~~~~~~~~~~~~~  175 (287)
T d1opja_          96 TYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAG  175 (287)
T ss_dssp             TTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCCCTTTCCSSSSEEETT
T ss_pred             cCcchHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHCCcccCccccCeEEECCCCcEEEccccceeecCCCCceeecc
Confidence            99999999976655579999999999999999999976        5689999999999999999999887655444433


Q ss_pred             ccccc
Q 039406          238 VMGTF  242 (243)
Q Consensus       238 ~~GT~  242 (243)
                      ..||+
T Consensus       176 ~~g~~  180 (287)
T d1opja_         176 AKFPI  180 (287)
T ss_dssp             EEECG
T ss_pred             ccccc
Confidence            44543

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.4e-32  Score=220.32  Aligned_cols=139  Identities=27%  Similarity=0.361  Sum_probs=122.1

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVY  162 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  162 (243)
                      ++|++.+.||+|+||.||+|+++.+.+                ..+.+.+|+.+|++++|||||++++++.+++.+||||
T Consensus         6 ~dy~i~~~iG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~ivm   85 (263)
T d2j4za1           6 EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLIL   85 (263)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hHeEEEEEEecCCCcEEEEEEECCCCcEEEEEEEchHHccChHHHHHHHHHHHHHHhcCCCCCCeEEEEEEECCEEEEEE
Confidence            679999999999999999999876532                3466889999999999999999999999999999999


Q ss_pred             eccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCcee
Q 039406          163 EFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNTHV  234 (243)
Q Consensus       163 e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~~~  234 (243)
                      |||++|+|.+++...+  .+++..++.++.||+.||.|||.        ||+|||++.++.+||+|||+|+.......  
T Consensus        86 Ey~~~g~L~~~l~~~~--~l~e~~~~~i~~qi~~al~~lH~~~ivHrDiKp~Nill~~~~~~kl~DFG~a~~~~~~~~--  161 (263)
T d2j4za1          86 EYAPLGTVYRELQKLS--KFDEQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRR--  161 (263)
T ss_dssp             ECCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCCSCSCCCCCCC--
T ss_pred             eecCCCcHHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHHHCCeeeeeeccccceecCCCCEeecccceeeecCCCcc--
Confidence            9999999999997654  49999999999999999999976        56999999999999999999988754432  


Q ss_pred             eecccccc
Q 039406          235 STRVMGTF  242 (243)
Q Consensus       235 ~~~~~GT~  242 (243)
                       ...+||+
T Consensus       162 -~~~~Gt~  168 (263)
T d2j4za1         162 -TTLCGTL  168 (263)
T ss_dssp             -EETTEEG
T ss_pred             -cccCCCC
Confidence             3467776

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.3e-32  Score=222.61  Aligned_cols=143  Identities=21%  Similarity=0.272  Sum_probs=120.5

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVY  162 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  162 (243)
                      ++|++.+.||+|+||.||+|+.+.+.+                ..+.+.+|+++|++++|||||+++++|.+++.+||||
T Consensus         8 ~dy~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~ivm   87 (288)
T d1uu3a_           8 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL   87 (288)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCSTTBCCEEEEEECSSEEEEEE
T ss_pred             CCCEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccCHHHHHHHHHHHHHHHHcCCCCeeEEEEEEEECCEEEEEE
Confidence            679999999999999999998765432                3456899999999999999999999999999999999


Q ss_pred             eccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCce-
Q 039406          163 EFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNTH-  233 (243)
Q Consensus       163 e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~~-  233 (243)
                      |||++|+|.+++...+  .+++..++.++.|++.||.|||.        ||+|||++.++.+||+|||+|+.+...... 
T Consensus        88 Ey~~gg~L~~~~~~~~--~l~e~~~~~~~~qi~~al~ylH~~~iiHrDiKp~NIll~~~~~vkl~DFG~a~~~~~~~~~~  165 (288)
T d1uu3a_          88 SYAKNGELLKYIRKIG--SFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQA  165 (288)
T ss_dssp             CCCTTEEHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECC------
T ss_pred             EccCCCCHHHhhhccC--CCCHHHHHHHHHHHHHHHHhhccccEEcCcCCccccccCCCceEEecccccceecccCCccc
Confidence            9999999999987654  49999999999999999999976        569999999999999999999988644322 


Q ss_pred             eeeccccccC
Q 039406          234 VSTRVMGTFG  243 (243)
Q Consensus       234 ~~~~~~GT~G  243 (243)
                      .....+||++
T Consensus       166 ~~~~~~GT~~  175 (288)
T d1uu3a_         166 RANSFVGTAQ  175 (288)
T ss_dssp             ----CCCCGG
T ss_pred             ccccccCCcc
Confidence            2335678863

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.1e-32  Score=229.04  Aligned_cols=141  Identities=21%  Similarity=0.281  Sum_probs=121.3

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCc--------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEe
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGK--------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYE  163 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~--------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e  163 (243)
                      .++|++.+.||+|+||.||+|++..+.              ...+.+.+|+.+|++++|||||+++++|.+.+.+|||||
T Consensus         5 ~d~y~~~~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~iVmE   84 (322)
T d1s9ja_           5 DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICME   84 (322)
T ss_dssp             GGGEEEEEEEECCSSCCEEEEEETTTTEEEEEEEEECCCCTTHHHHHHHHGGGGGGCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             ccCCEEEEEEecCCCeEEEEEEECCCCcEEEEEEEChhhCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEE
Confidence            478999999999999999999876542              245778999999999999999999999999999999999


Q ss_pred             ccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc---------CCCcEEECCCCcEEEeccCCceecCCCCcee
Q 039406          164 FVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD---------DLANILLDFKFEAKVADFGLAKIASDVNTHV  234 (243)
Q Consensus       164 ~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~---------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~~~  234 (243)
                      ||++|+|.+++.+.+  .+++..++.++.|++.||.|||.         ||+||||+.++++||+|||+|+.+.+..   
T Consensus        85 y~~gg~L~~~l~~~~--~l~~~~~~~~~~qil~aL~yLH~~~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~~---  159 (322)
T d1s9ja_          85 HMDGGSLDQVLKKAG--RIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSM---  159 (322)
T ss_dssp             CCTTEEHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHHHCCCCSCCSGGGEEECTTCCEEECCCCCCHHHHHHT---
T ss_pred             cCCCCcHHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHHHhCCEEccccCHHHeeECCCCCEEEeeCCCccccCCCc---
Confidence            999999999997654  48999999999999999999984         5689999999999999999999875432   


Q ss_pred             eeccccccC
Q 039406          235 STRVMGTFG  243 (243)
Q Consensus       235 ~~~~~GT~G  243 (243)
                      .++.+||++
T Consensus       160 ~~~~~GT~~  168 (322)
T d1s9ja_         160 ANSFVGTRS  168 (322)
T ss_dssp             C---CCSSC
T ss_pred             cccccCCcc
Confidence            234678863

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.9e-31  Score=224.30  Aligned_cols=143  Identities=22%  Similarity=0.262  Sum_probs=124.5

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEE
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLV  161 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv  161 (243)
                      .++|++++.||+|+||.||+|+.+.+.+                ..+.+.+|+.+|++++|||||+++++|.+.+.+|+|
T Consensus         4 l~dy~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~iv   83 (337)
T d1o6la_           4 MNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFV   83 (337)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hHhcEEEEEEecCcCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhCCCCCEEEEEeeeccccccccc
Confidence            3789999999999999999998765532                346688999999999999999999999999999999


Q ss_pred             EeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCce
Q 039406          162 YEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNTH  233 (243)
Q Consensus       162 ~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~~  233 (243)
                      ||||+||+|.+++...+  .+++..++.++.|++.||.|||+        ||+|||++.+|.+||+|||+|+....... 
T Consensus        84 ~ey~~gg~L~~~~~~~~--~~~e~~~~~~~~qil~al~ylH~~~iiHRDlKP~NILl~~~g~vkl~DFG~a~~~~~~~~-  160 (337)
T d1o6la_          84 MEYANGGELFFHLSRER--VFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGA-  160 (337)
T ss_dssp             EECCTTCBHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCCTTC-
T ss_pred             eeccCCCchhhhhhccc--CCcHHHHHHHHHHHhhhhhhhhhcCccccccCHHHeEecCCCCEEEeecccccccccCCc-
Confidence            99999999999997655  48999999999999999999986        67999999999999999999998754433 


Q ss_pred             eeeccccccC
Q 039406          234 VSTRVMGTFG  243 (243)
Q Consensus       234 ~~~~~~GT~G  243 (243)
                      .....+||++
T Consensus       161 ~~~~~~GT~~  170 (337)
T d1o6la_         161 TMKTFCGTPE  170 (337)
T ss_dssp             CBCCCEECGG
T ss_pred             ccccceeCHH
Confidence            2345788863

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.3e-32  Score=223.69  Aligned_cols=142  Identities=20%  Similarity=0.290  Sum_probs=120.7

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc-------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEecc
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK-------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFV  165 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~-------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~  165 (243)
                      +.|++++.||+|+||.||+|+++.+.             ...+.+.+|+++|++++|||||++++++.+.+.+|||||||
T Consensus        12 d~Y~i~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lvmEy~   91 (288)
T d2jfla1          12 DFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFC   91 (288)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECSSSGGGGGTHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             cCeEEeEEEeeCCCcEEEEEEECCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCeEEEEEecC
Confidence            56899999999999999999876542             24577899999999999999999999999999999999999


Q ss_pred             CCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCceeeec
Q 039406          166 LNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNTHVSTR  237 (243)
Q Consensus       166 ~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~~~~~~  237 (243)
                      ++|+|.+++..... .+++..++.++.||+.||.|||.        ||+|||++.++++||+|||+|+....... ...+
T Consensus        92 ~~g~L~~~~~~~~~-~l~e~~~~~i~~qi~~gL~ylH~~~ivHrDiKp~NIll~~~~~~Kl~DFG~a~~~~~~~~-~~~~  169 (288)
T d2jfla1          92 AGGAVDAVMLELER-PLTESQIQVVCKQTLDALNYLHDNKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQ-RRDS  169 (288)
T ss_dssp             TTEEHHHHHHHHTS-CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECHHHHH-HHTC
T ss_pred             CCCcHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHHHCCEEEeecChhheeECCCCCEEEEechhhhccCCCcc-cccc
Confidence            99999998765433 49999999999999999999976        56999999999999999999987643322 1223


Q ss_pred             ccccc
Q 039406          238 VMGTF  242 (243)
Q Consensus       238 ~~GT~  242 (243)
                      .+||+
T Consensus       170 ~~Gt~  174 (288)
T d2jfla1         170 FIGTP  174 (288)
T ss_dssp             CCSCC
T ss_pred             ccccc
Confidence            56665

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.5e-31  Score=217.79  Aligned_cols=143  Identities=26%  Similarity=0.345  Sum_probs=112.2

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc-----------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccCC
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK-----------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLN  167 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~-----------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~  167 (243)
                      ++|++.+.||+|+||.||+|++.++.           ...+.|.+|+++|++++|||||++++++..++.+|+|||||++
T Consensus         5 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~lv~E~~~~   84 (263)
T d1sm2a_           5 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFMEH   84 (263)
T ss_dssp             SCEEEEEEEECCSSCCEEEEEETTTEEEEEEECCSSSSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTT
T ss_pred             HHcEEEEEEeeCCCeEEEEEEECCCCEEEEEEECCCcCcHHHHHHHHHHHHhcCCCCcccccceeccCCceEEEEEecCC
Confidence            57889999999999999999876543           2457899999999999999999999999999999999999999


Q ss_pred             CCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCceeeeccc
Q 039406          168 NTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNTHVSTRVM  239 (243)
Q Consensus       168 g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~~~~~~~~  239 (243)
                      |+|.+++..... .+++..++.++.|++.||.|||.        |++|||++.++++||+|||+|+.+............
T Consensus        85 g~L~~~l~~~~~-~~~~~~~~~i~~qia~gl~~lH~~~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~  163 (263)
T d1sm2a_          85 GCLSDYLRTQRG-LFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTK  163 (263)
T ss_dssp             CBHHHHHHTTTT-CCCHHHHHHHHHHHHHHHHHHHHTTCCCTTCSGGGEEECGGGCEEECSCC-----------------
T ss_pred             CcHHHHhhcccc-CCCHHHHHHHHHHHHHHHHhhhccceeecccchhheeecCCCCeEecccchheeccCCCceeeccee
Confidence            999999876543 58999999999999999999976        568999999999999999999987655443333445


Q ss_pred             ccc
Q 039406          240 GTF  242 (243)
Q Consensus       240 GT~  242 (243)
                      ||+
T Consensus       164 gt~  166 (263)
T d1sm2a_         164 FPV  166 (263)
T ss_dssp             -CT
T ss_pred             cCc
Confidence            654

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2e-31  Score=218.06  Aligned_cols=144  Identities=24%  Similarity=0.338  Sum_probs=121.7

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCc-----------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccC
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGK-----------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVL  166 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~-----------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~  166 (243)
                      .++|++.+.||+|+||.||+|+++.+.           ...+.|.+|+.+|++++|||||++++++. ++.+|||||||+
T Consensus        12 ~~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~-~~~~~iv~Ey~~   90 (272)
T d1qpca_          12 RETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVT-QEPIYIITEYME   90 (272)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEEEEECCT
T ss_pred             HHHeEEeEEEecCCCcEEEEEEECCCCEEEEEEEccCcCCHHHHHHHHHHHHhCCCCCEeEEEeeec-cCCeEEEEEeCC
Confidence            367889999999999999999876542           24577999999999999999999999875 466899999999


Q ss_pred             CCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCceeeecc
Q 039406          167 NNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNTHVSTRV  238 (243)
Q Consensus       167 ~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~~~~~~~  238 (243)
                      +|+|.+++.......+++..++.++.||+.||.|||.        |++||||+.++.+||+|||+|+.+.+.........
T Consensus        91 ~g~L~~~~~~~~~~~l~~~~~~~i~~qi~~gl~~lH~~~ivHrDiKp~NIll~~~~~~Kl~DFGla~~~~~~~~~~~~~~  170 (272)
T d1qpca_          91 NGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGA  170 (272)
T ss_dssp             TCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECSSSCEECCTTC
T ss_pred             CCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCccchhheeeecccceeeccccceEEccCCcccccccc
Confidence            9999998865544458999999999999999999976        56899999999999999999999876554444445


Q ss_pred             cccc
Q 039406          239 MGTF  242 (243)
Q Consensus       239 ~GT~  242 (243)
                      .||+
T Consensus       171 ~gt~  174 (272)
T d1qpca_         171 KFPI  174 (272)
T ss_dssp             CCCT
T ss_pred             CCcc
Confidence            6664

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=99.97  E-value=1.3e-30  Score=220.25  Aligned_cols=142  Identities=23%  Similarity=0.337  Sum_probs=122.2

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCch-------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEec
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGKE-------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEF  164 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~-------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  164 (243)
                      .++|.+.+.||+|+||.||+|+.+.+.+             ..+.+.+|+.+|++|+|||||++++++.+++.+||||||
T Consensus        25 l~~Y~i~~~lG~G~fg~Vy~~~~~~~g~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmE~  104 (350)
T d1koaa2          25 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEF  104 (350)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECCCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEEETTEEEEEECC
T ss_pred             ccCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEcccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEc
Confidence            4789999999999999999998765432             456788999999999999999999999999999999999


Q ss_pred             cCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECC--CCcEEEeccCCceecCCCCcee
Q 039406          165 VLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDF--KFEAKVADFGLAKIASDVNTHV  234 (243)
Q Consensus       165 ~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~--~~~~kl~DFG~a~~~~~~~~~~  234 (243)
                      |+||+|.+++..... .+++..++.++.||+.||.|||.        ||+|||++.  ++.+||+|||+|+.+.....  
T Consensus       105 ~~gg~L~~~l~~~~~-~l~e~~~~~i~~qi~~aL~ylH~~~iiHrDiKp~NIll~~~~~~~vkL~DFG~a~~~~~~~~--  181 (350)
T d1koaa2         105 MSGGELFEKVADEHN-KMSEDEAVEYMRQVCKGLCHMHENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQS--  181 (350)
T ss_dssp             CCSCBHHHHHTCTTS-CBCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSTTSCCEEECCCTTCEECCTTSC--
T ss_pred             CCCCCHHHHHHhhcC-CCCHHHHHHHHHHHHHHHHHHHhcCCeeeeechhHeeeccCCCCeEEEeecchheecccccc--
Confidence            999999999865433 49999999999999999999976        569999964  57899999999998866543  


Q ss_pred             eecccccc
Q 039406          235 STRVMGTF  242 (243)
Q Consensus       235 ~~~~~GT~  242 (243)
                      ....+||+
T Consensus       182 ~~~~~gT~  189 (350)
T d1koaa2         182 VKVTTGTA  189 (350)
T ss_dssp             EEEECSCT
T ss_pred             cceecCcc
Confidence            23456775

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=3e-31  Score=219.77  Aligned_cols=131  Identities=27%  Similarity=0.409  Sum_probs=107.7

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc-----------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK-----------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLV  161 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~-----------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv  161 (243)
                      ++|.+.++||+|+||.||+|+++.+.                 ...+.|.+|+++|++++|||||++++++.+.+.+|||
T Consensus        26 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~~~~~iv  105 (299)
T d1jpaa_          26 SCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNVIHLEGVVTKSTPVMII  105 (299)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEECC---CCEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEEE
T ss_pred             hhcEEeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEEEE
Confidence            45667889999999999999865331                 2456799999999999999999999999999999999


Q ss_pred             EeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          162 YEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       162 ~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      ||||++|+|.+++..... .+++..++.++.|++.||.|||.        |++||||+.++.+||+|||+|+.+...
T Consensus       106 ~Ey~~~g~L~~~~~~~~~-~l~~~~~~~i~~qia~gl~yLH~~~iiHrDlKp~NILl~~~~~~Kl~DFGla~~~~~~  181 (299)
T d1jpaa_         106 TEFMENGSLDSFLRQNDG-QFTVIQLVGMLRGIAAGMKYLADMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDD  181 (299)
T ss_dssp             EECCTTEEHHHHHHTTTT-CSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCC---------
T ss_pred             EEecCCCcceeeeccccC-CCCHHHHHHHHHHHHHHHHHHhhCCCccCccccceEEECCCCcEEECCcccceEccCC
Confidence            999999999998876443 58999999999999999999976        568999999999999999999987654

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.3e-31  Score=218.77  Aligned_cols=144  Identities=17%  Similarity=0.247  Sum_probs=114.3

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch---------------hHHHHHHHHHHHHhcCCCccceEEEEEEe--CCeeEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE---------------GEREFQAEVEIISRVHHKHLVSLVGYYTA--GSQRMLV  161 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~---------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~--~~~~~lv  161 (243)
                      ++|++.+.||+|+||.||+|+.+.+.+               ..+.+.+|+++|++++|||||++++++.+  ++.+|||
T Consensus         4 edy~~~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~iv   83 (269)
T d2java1           4 EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIV   83 (269)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCTTSCHHHHHHHHHHHHHTTSCCCTTBCCEEEEEEC----CEEEE
T ss_pred             hhCEEeEEEecCCCeEEEEEEECCCCCEEEEEEEChhhCCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEeCCCCEEEEE
Confidence            689999999999999999998765432               35678899999999999999999999864  4568999


Q ss_pred             EeccCCCCHHHHhccC--CCCCCCHHHHHHHHHHHHHhhhHhhc-------------CCCcEEECCCCcEEEeccCCcee
Q 039406          162 YEFVLNNTLVFHLHGK--GQPTMDWPTRIKIALGSAKGLAYLHD-------------DLANILLDFKFEAKVADFGLAKI  226 (243)
Q Consensus       162 ~e~~~~g~L~~~l~~~--~~~~l~~~~~~~i~~~i~~~l~~lH~-------------~~~NiLl~~~~~~kl~DFG~a~~  226 (243)
                      ||||++|+|.+++...  ....+++..++.++.|++.||.|||.             ||+||||+.++.+||+|||+|+.
T Consensus        84 mEy~~~g~L~~~i~~~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~~~~~~IiHrDiKp~NIll~~~~~vkl~DFG~a~~  163 (269)
T d2java1          84 MEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARI  163 (269)
T ss_dssp             EECCTTEEHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHCC---------CCGGGEEECTTSCEEECCHHHHHH
T ss_pred             EecCCCCcHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEeCcCchhhcCcCCCCcEEEeeccceee
Confidence            9999999999988642  22359999999999999999999973             56899999999999999999998


Q ss_pred             cCCCCceeeeccccccC
Q 039406          227 ASDVNTHVSTRVMGTFG  243 (243)
Q Consensus       227 ~~~~~~~~~~~~~GT~G  243 (243)
                      +..... .....+||++
T Consensus       164 ~~~~~~-~~~~~~gt~~  179 (269)
T d2java1         164 LNHDTS-FAKAFVGTPY  179 (269)
T ss_dssp             C------------CCCS
T ss_pred             cccCCC-ccccCCCCcc
Confidence            765433 2334678764

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=99.97  E-value=1.4e-30  Score=220.27  Aligned_cols=141  Identities=23%  Similarity=0.319  Sum_probs=120.9

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch-------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEecc
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE-------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFV  165 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~-------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~  165 (243)
                      ++|++.+.||+|+||.||+|+.+.+.+             ..+.+.+|+++|++|+|||||+++++|.+++.+|||||||
T Consensus        29 d~Y~i~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivmE~~  108 (352)
T d1koba_          29 DYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEFL  108 (352)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEECC
T ss_pred             cceEEEEEEecCCCeEEEEEEECCCCCEEEEEEECCcchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEcC
Confidence            679999999999999999998765432             3567889999999999999999999999999999999999


Q ss_pred             CCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEEC--CCCcEEEeccCCceecCCCCceee
Q 039406          166 LNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLD--FKFEAKVADFGLAKIASDVNTHVS  235 (243)
Q Consensus       166 ~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~--~~~~~kl~DFG~a~~~~~~~~~~~  235 (243)
                      +||+|.+++...+. .+++..++.++.||+.||.|||.        ||+||||+  .++.+||+|||+|+.+.....  .
T Consensus       109 ~gg~L~~~~~~~~~-~l~e~~~~~i~~qi~~aL~ylH~~~iiHRDiKp~NILl~~~~~~~vkL~DFGla~~~~~~~~--~  185 (352)
T d1koba_         109 SGGELFDRIAAEDY-KMSEAEVINYMRQACEGLKHMHEHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEI--V  185 (352)
T ss_dssp             CCCBHHHHTTCTTC-CBCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTSC--E
T ss_pred             CCChHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHHHCCeeecccccccccccccCCCeEEEeecccceecCCCCc--e
Confidence            99999988765443 49999999999999999999976        56999997  568999999999999876543  2


Q ss_pred             ecccccc
Q 039406          236 TRVMGTF  242 (243)
Q Consensus       236 ~~~~GT~  242 (243)
                      ...+||+
T Consensus       186 ~~~~gt~  192 (352)
T d1koba_         186 KVTTATA  192 (352)
T ss_dssp             EEECSSG
T ss_pred             eeccCcc
Confidence            3345664

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.8e-31  Score=215.21  Aligned_cols=143  Identities=26%  Similarity=0.433  Sum_probs=115.4

Q ss_pred             hCCCCccceeeecCceEEEEEEecCC------------chhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEecc
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNG------------KEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFV  165 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~------------~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~  165 (243)
                      .++|.+.+.||+|+||.||+|+++..            .+..+.|.+|+.+|++++|||||++++++. .+.+|||||||
T Consensus         7 ~~~~~~~~~lG~G~fg~Vy~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~~~~~-~~~~~lv~Ey~   85 (276)
T d1uwha_           7 DGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYST-APQLAIVTQWC   85 (276)
T ss_dssp             TTCCCCCSEEEECSSCEEEEEESSSEEEEEECCCSSCCTTHHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEEEECC
T ss_pred             cccEEEEEEEeeCCCcEEEEEEECCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeeeEEEe-ccEEEEEEecC
Confidence            37899999999999999999975432            235678999999999999999999999865 46789999999


Q ss_pred             CCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCc-eeee
Q 039406          166 LNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNT-HVST  236 (243)
Q Consensus       166 ~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~-~~~~  236 (243)
                      ++|+|.+++...+. .+++..++.++.|++.||.|||.        |++||||+.++.+||+|||+|+....... ....
T Consensus        86 ~~g~L~~~l~~~~~-~~~~~~~~~i~~qi~~gl~yLH~~~ivHrDlKp~NiLl~~~~~~Kl~DFGla~~~~~~~~~~~~~  164 (276)
T d1uwha_          86 EGSSLYHHLHIIET-KFEMIKLIDIARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFE  164 (276)
T ss_dssp             CEEEHHHHHHTSCC-CCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEETTSSEEECCCCCSCC-----------
T ss_pred             CCCCHHHHHhhccC-CCCHHHHHHHHHHHHHHHHHHhcCCEeccccCHHHEEEcCCCCEEEccccceeeccccCCccccc
Confidence            99999999975543 49999999999999999999976        56899999999999999999988754332 2333


Q ss_pred             cccccc
Q 039406          237 RVMGTF  242 (243)
Q Consensus       237 ~~~GT~  242 (243)
                      +.+||+
T Consensus       165 ~~~gt~  170 (276)
T d1uwha_         165 QLSGSI  170 (276)
T ss_dssp             -CCCCG
T ss_pred             ccccCc
Confidence            456775

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.97  E-value=7.2e-31  Score=218.32  Aligned_cols=136  Identities=27%  Similarity=0.335  Sum_probs=117.6

Q ss_pred             CCCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEe
Q 039406          100 GFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYE  163 (243)
Q Consensus       100 ~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e  163 (243)
                      .|+.++.||+|+||.||+|+...+.+                ..+.+.+|+.+|++++|||||++++++.+++.+|||||
T Consensus        16 ~y~~l~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv~E   95 (309)
T d1u5ra_          16 LFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVME   95 (309)
T ss_dssp             HEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEECCSSCHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             hcEeeEEEecCCCeEEEEEEECCCCcEEEEEEEchhhccCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEECCEEEEEEE
Confidence            48899999999999999998665432                34678999999999999999999999999999999999


Q ss_pred             ccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCceee
Q 039406          164 FVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNTHVS  235 (243)
Q Consensus       164 ~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~~~~  235 (243)
                      ||.+|+|..++..++  .+++..++.++.||+.||.|||.        ||+||||+.++++||+|||+|+......    
T Consensus        96 ~~~~g~l~~~~~~~~--~l~e~~~~~i~~qi~~aL~yLH~~~iiHrDiKp~NILl~~~~~~Kl~DFG~a~~~~~~~----  169 (309)
T d1u5ra_          96 YCLGSASDLLEVHKK--PLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPAN----  169 (309)
T ss_dssp             CCSEEHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEEETTTEEEECCCTTCBSSSSBC----
T ss_pred             ecCCCchHHHHHhCC--CCCHHHHHHHHHHHHHHHHHHHhCCEeccCCCcceEEECCCCCEEEeecccccccCCCC----
Confidence            999999987765544  49999999999999999999976        5699999999999999999998765432    


Q ss_pred             ecccccc
Q 039406          236 TRVMGTF  242 (243)
Q Consensus       236 ~~~~GT~  242 (243)
                       ..+||+
T Consensus       170 -~~~GT~  175 (309)
T d1u5ra_         170 -SFVGTP  175 (309)
T ss_dssp             -CCCSCG
T ss_pred             -ccccCc
Confidence             346765

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.7e-30  Score=216.74  Aligned_cols=139  Identities=25%  Similarity=0.322  Sum_probs=122.4

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVY  162 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  162 (243)
                      ++|++.+.||+|+||.||+|+.+.+.+                ..+.+.+|+.+|++++|||||++++++.+.+.+|+||
T Consensus         4 ~dy~i~~~lG~G~fg~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivm   83 (316)
T d1fota_           4 QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMIM   83 (316)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEEE
T ss_pred             hHeEEEEEEecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHhccCcChhheeeeEeeCCeeeeEe
Confidence            679999999999999999999765432                3467889999999999999999999999999999999


Q ss_pred             eccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCcee
Q 039406          163 EFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNTHV  234 (243)
Q Consensus       163 e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~~~  234 (243)
                      |||.||+|..++....  .+.+..++.++.||+.||.|||+        ||+||||+.+|.+||+|||+|+.+.+..   
T Consensus        84 E~~~gg~l~~~~~~~~--~~~~~~~~~~~~qi~~al~~lH~~~iiHrDiKp~NILl~~~g~vkL~DFG~a~~~~~~~---  158 (316)
T d1fota_          84 DYIEGGELFSLLRKSQ--RFPNPVAKFYAAEVCLALEYLHSKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDVT---  158 (316)
T ss_dssp             CCCCSCBHHHHHHHTS--SCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECTTSCEEECCCSSCEECSSCB---
T ss_pred             eecCCccccccccccc--cccccHHHHHHHHHHHhhhhhccCcEEccccCchheeEcCCCCEEEecCccceEecccc---
Confidence            9999999999987655  48888999999999999999987        5799999999999999999999876533   


Q ss_pred             eeccccccC
Q 039406          235 STRVMGTFG  243 (243)
Q Consensus       235 ~~~~~GT~G  243 (243)
                       .+.+||++
T Consensus       159 -~~~~Gt~~  166 (316)
T d1fota_         159 -YTLCGTPD  166 (316)
T ss_dssp             -CCCCSCTT
T ss_pred             -ccccCccc
Confidence             34678864

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.97  E-value=1.8e-30  Score=212.69  Aligned_cols=140  Identities=23%  Similarity=0.274  Sum_probs=121.3

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch----------------------hHHHHHHHHHHHHhcC-CCccceEEEEEEeC
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE----------------------GEREFQAEVEIISRVH-HKHLVSLVGYYTAG  155 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~----------------------~~~~~~~E~~~l~~l~-hp~iv~~~~~~~~~  155 (243)
                      ++|++.+.||+|+||+||+|+...+.+                      ..+.+.+|+.+|++++ |||||++++++.++
T Consensus         3 ~~y~~~~~iG~G~~g~V~~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~   82 (277)
T d1phka_           3 ENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYETN   82 (277)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEECS
T ss_pred             ccCEEceEEecCcCeEEEEEEECCCCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeecccC
Confidence            689999999999999999998654321                      2346889999999997 99999999999999


Q ss_pred             CeeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceec
Q 039406          156 SQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIA  227 (243)
Q Consensus       156 ~~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~  227 (243)
                      +.+|||||||++|+|.+++...+  .+++..++.++.||+.||.|||.        +|+|||++.++.+||+|||+|+.+
T Consensus        83 ~~~~ivmE~~~~g~L~~~l~~~~--~l~e~~~~~~~~qi~~al~~lH~~~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~  160 (277)
T d1phka_          83 TFFFLVFDLMKKGELFDYLTEKV--TLSEKETRKIMRALLEVICALHKLNIVHRDLKPENILLDDDMNIKLTDFGFSCQL  160 (277)
T ss_dssp             SEEEEEEECCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEEC
T ss_pred             cceEEEEEcCCCchHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHcCCcccccccceEEEcCCCCeEEccchheeEc
Confidence            99999999999999999997654  49999999999999999999986        568999999999999999999988


Q ss_pred             CCCCceeeecccccc
Q 039406          228 SDVNTHVSTRVMGTF  242 (243)
Q Consensus       228 ~~~~~~~~~~~~GT~  242 (243)
                      .....  .+..+||+
T Consensus       161 ~~~~~--~~~~~gt~  173 (277)
T d1phka_         161 DPGEK--LREVCGTP  173 (277)
T ss_dssp             CTTCC--BCCCCSCG
T ss_pred             cCCCc--eeeeeccC
Confidence            65432  23356664

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.4e-30  Score=209.99  Aligned_cols=143  Identities=22%  Similarity=0.280  Sum_probs=122.6

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc-----------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccCC
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK-----------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLN  167 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~-----------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~  167 (243)
                      ++|++.+.||+|+||+||+|+++++.           ...+.|++|+.+|++++|||||++++++.+++.+++|||||++
T Consensus         4 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~l~~~~~~~~~~~~Ev~~~~~l~HpnIv~~~g~~~~~~~~~iv~Ey~~~   83 (258)
T d1k2pa_           4 KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMAN   83 (258)
T ss_dssp             CCCCCCCCCCEETTEEEEEEEETTTEEEEEEEEESSSSCHHHHHHHHHHHHTCCCTTBCCEEEEECCSSSEEEEEECCTT
T ss_pred             HHCEEeEEEecCCCeEEEEEEECCCCEEEEEEECcCcCCHHHHHHHHHHHHhcCCCceeeEEEEEeeCCceEEEEEccCC
Confidence            68999999999999999999876542           2467899999999999999999999999999999999999999


Q ss_pred             CCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCceeeeccc
Q 039406          168 NTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNTHVSTRVM  239 (243)
Q Consensus       168 g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~~~~~~~~  239 (243)
                      |+|.+++..... .+.+..++.++.|++.||.|||.        +++|||++.++.+||+|||+|+.+............
T Consensus        84 g~l~~~~~~~~~-~~~~~~~~~i~~qi~~gl~~LH~~~iiH~dlk~~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~  162 (258)
T d1k2pa_          84 GCLLNYLREMRH-RFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSK  162 (258)
T ss_dssp             EEHHHHHHSGGG-CCCHHHHHHHHHHHHHHHHHHHHTTBCCSCCSGGGEEECTTCCEEECCCSSCCBCSSSSCCCCCCSC
T ss_pred             CcHHHhhhcccc-CCcHHHHHHHHHHHHHHHHHHhhcCcccccccceeEEEcCCCcEEECcchhheeccCCCceeecccC
Confidence            999998765443 48899999999999999999987        458999999999999999999987655443333345


Q ss_pred             ccc
Q 039406          240 GTF  242 (243)
Q Consensus       240 GT~  242 (243)
                      ||+
T Consensus       163 ~t~  165 (258)
T d1k2pa_         163 FPV  165 (258)
T ss_dssp             CCG
T ss_pred             CCC
Confidence            553

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.97  E-value=6.1e-31  Score=218.61  Aligned_cols=142  Identities=21%  Similarity=0.332  Sum_probs=107.0

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCch--------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEe
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGKE--------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYE  163 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~--------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e  163 (243)
                      .+.|++.+.||+|+||.||+|+++.+.+              ..+.+.+|+.+|++++|||||++++++.+++.+|||||
T Consensus         8 ~d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~lvmE   87 (307)
T d1a06a_           8 RDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKIKHPNIVALDDIYESGGHLYLIMQ   87 (307)
T ss_dssp             GGTEEEEEESBSGGGGGEEEEEETTTCCEEEEEEEEC----------CHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred             ccceEEEEEEeeccCeEEEEEEECCCCCEEEEEEEchHHhhhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEe
Confidence            4679999999999999999998765432              23567889999999999999999999999999999999


Q ss_pred             ccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEEC---CCCcEEEeccCCceecCCCCc
Q 039406          164 FVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLD---FKFEAKVADFGLAKIASDVNT  232 (243)
Q Consensus       164 ~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~---~~~~~kl~DFG~a~~~~~~~~  232 (243)
                      ||+||+|.+++...+  .+++..+..++.||+.||.|||.        ||+|||+.   .++.+||+|||+|+.......
T Consensus        88 ~~~gg~L~~~l~~~~--~l~e~~~~~~~~qi~~al~ylH~~~iiHrDiKp~Nil~~~~~~~~~vkl~DFG~a~~~~~~~~  165 (307)
T d1a06a_          88 LVSGGELFDRIVEKG--FYTERDASRLIFQVLDAVKYLHDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSV  165 (307)
T ss_dssp             CCCSCBHHHHHHTCS--CCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESSSSTTCCEEECCC-----------
T ss_pred             ccCCCcHHHhhhccc--CCCHHHHHHHHHHHHHHHHhhhhceeeeEEecccceeecccCCCceEEEeccceeEEccCCCe
Confidence            999999999997654  49999999999999999999976        56899994   578999999999998765432


Q ss_pred             eeeeccccccC
Q 039406          233 HVSTRVMGTFG  243 (243)
Q Consensus       233 ~~~~~~~GT~G  243 (243)
                        ..+.+||++
T Consensus       166 --~~~~~GT~~  174 (307)
T d1a06a_         166 --LSTACGTPG  174 (307)
T ss_dssp             ---------CT
T ss_pred             --eeeeeeCcc
Confidence              234678863

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.9e-30  Score=210.80  Aligned_cols=137  Identities=22%  Similarity=0.271  Sum_probs=114.2

Q ss_pred             CccceeeecCceEEEEEEecCCch---------------hHHHHHHHHHHHHhcCCCccceEEEEEEe----CCeeEEEE
Q 039406          102 SDANLLRQDGFGYVHRGVLPNGKE---------------GEREFQAEVEIISRVHHKHLVSLVGYYTA----GSQRMLVY  162 (243)
Q Consensus       102 ~~~~~lg~G~~g~V~~~~~~~~~~---------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~----~~~~~lv~  162 (243)
                      +..+.||+|+||+||+|++..+..               ..+.+.+|+++|++++|||||+++++|.+    .+.+||||
T Consensus        12 ~~~~~iG~G~fg~Vy~~~~~~~~~~va~K~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~~~ivm   91 (270)
T d1t4ha_          12 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVT   91 (270)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEEEE
T ss_pred             EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEeeccccCCEEEEEE
Confidence            456689999999999998765431               35678999999999999999999999875    45689999


Q ss_pred             eccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc----------CCCcEEEC-CCCcEEEeccCCceecCCCC
Q 039406          163 EFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD----------DLANILLD-FKFEAKVADFGLAKIASDVN  231 (243)
Q Consensus       163 e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~----------~~~NiLl~-~~~~~kl~DFG~a~~~~~~~  231 (243)
                      |||++|+|.+++....  .+++..++.++.||+.||.|||.          ||+||||+ .++.+||+|||+|+......
T Consensus        92 E~~~~g~L~~~l~~~~--~~~~~~~~~~~~qi~~gl~yLH~~~~~IiHrDiKp~NILl~~~~~~~Kl~DFGla~~~~~~~  169 (270)
T d1t4ha_          92 ELMTSGTLKTYLKRFK--VMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASF  169 (270)
T ss_dssp             ECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHTSSSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCCTTS
T ss_pred             eCCCCCcHHHHHhccc--cccHHHHHHHHHHHHHHHHHHHHCCCCEEeCCcChhhceeeCCCCCEEEeecCcceeccCCc
Confidence            9999999999997654  48999999999999999999986          45899996 57899999999998754432


Q ss_pred             ceeeeccccccC
Q 039406          232 THVSTRVMGTFG  243 (243)
Q Consensus       232 ~~~~~~~~GT~G  243 (243)
                         ....+||+.
T Consensus       170 ---~~~~~GT~~  178 (270)
T d1t4ha_         170 ---AKAVIGTPE  178 (270)
T ss_dssp             ---BEESCSSCC
T ss_pred             ---cCCcccCcc
Confidence               234678863

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.9e-30  Score=211.81  Aligned_cols=141  Identities=23%  Similarity=0.308  Sum_probs=120.6

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCch-------------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCee
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGKE-------------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQR  158 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~-------------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~  158 (243)
                      .+.|.+.+.||+|+||.||+|+++.+.+                   ..+.+.+|+.+|++++|||||+++++|.+.+.+
T Consensus         9 ~d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~   88 (293)
T d1jksa_           9 DDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDV   88 (293)
T ss_dssp             GGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred             ccCEEEeEEEecCCCeEEEEEEECCCCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEE
Confidence            3679999999999999999998764421                   357799999999999999999999999999999


Q ss_pred             EEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCC----cEEEeccCCcee
Q 039406          159 MLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKF----EAKVADFGLAKI  226 (243)
Q Consensus       159 ~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~----~~kl~DFG~a~~  226 (243)
                      |||||||++|+|.+++...+  .+++..++.++.|++.||.|||.        ||+|||++.++    .+||+|||+|+.
T Consensus        89 ~iv~E~~~gg~L~~~i~~~~--~l~~~~~~~~~~qi~~al~yLH~~~ivHrDiKp~Nill~~~~~~~~~vkl~DfG~a~~  166 (293)
T d1jksa_          89 ILILELVAGGELFDFLAEKE--SLTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHK  166 (293)
T ss_dssp             EEEEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCSSSSSCCEEECCCTTCEE
T ss_pred             EEEEEcCCCccccchhcccc--ccchhHHHHHHHHHHHHHHhhhhcceeecccccceEEEecCCCcccceEecchhhhhh
Confidence            99999999999999997654  49999999999999999999976        56999998776    599999999998


Q ss_pred             cCCCCceeeecccccc
Q 039406          227 ASDVNTHVSTRVMGTF  242 (243)
Q Consensus       227 ~~~~~~~~~~~~~GT~  242 (243)
                      +.....  ....+||+
T Consensus       167 ~~~~~~--~~~~~~t~  180 (293)
T d1jksa_         167 IDFGNE--FKNIFGTP  180 (293)
T ss_dssp             CTTSCB--CSCCCCCG
T ss_pred             cCCCcc--ccccCCCC
Confidence            865433  22345554

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=9.4e-30  Score=212.66  Aligned_cols=142  Identities=17%  Similarity=0.286  Sum_probs=120.4

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCch------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEecc
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGKE------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFV  165 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~  165 (243)
                      .++|.+++.||+|+||.||+|+++.+++            ....+.+|+++|+.++|||||+++++|.+++.+|||||||
T Consensus         4 ~~rY~i~~~lG~G~fg~Vy~~~~~~~~~~~AiK~i~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~lvmE~~   83 (321)
T d1tkia_           4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEISILNIARHRNILHLHESFESMEELVMIFEFI   83 (321)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCTHHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred             ccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEcCCcccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEecC
Confidence            4789999999999999999998775532            3456889999999999999999999999999999999999


Q ss_pred             CCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCC--CcEEEeccCCceecCCCCceee
Q 039406          166 LNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFK--FEAKVADFGLAKIASDVNTHVS  235 (243)
Q Consensus       166 ~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~--~~~kl~DFG~a~~~~~~~~~~~  235 (243)
                      .||+|.+++...+. .+++..++.++.||+.||.|||.        ||+|||++.+  ..+||+|||+++.......  .
T Consensus        84 ~gg~L~~~i~~~~~-~l~e~~~~~i~~qi~~al~yLH~~~iiHrDlKp~NIll~~~~~~~ikl~DFG~~~~~~~~~~--~  160 (321)
T d1tkia_          84 SGLDIFERINTSAF-ELNEREIVSYVHQVCEALQFLHSHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDN--F  160 (321)
T ss_dssp             CCCBHHHHHTSSSC-CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTTCE--E
T ss_pred             CCCcHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccceeecCCCceEEEEcccchhhccccCCc--c
Confidence            99999999976543 48999999999999999999976        5689999854  5899999999998765433  2


Q ss_pred             ecccccc
Q 039406          236 TRVMGTF  242 (243)
Q Consensus       236 ~~~~GT~  242 (243)
                      ...+||+
T Consensus       161 ~~~~~t~  167 (321)
T d1tkia_         161 RLLFTAP  167 (321)
T ss_dssp             EEEESCG
T ss_pred             ccccccc
Confidence            2345554

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=9.8e-31  Score=215.12  Aligned_cols=143  Identities=25%  Similarity=0.371  Sum_probs=114.1

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch-----------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccCC
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE-----------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLN  167 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~-----------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~  167 (243)
                      ++|++.+.||+|+||.||+|+++++..           ..+.|.+|+.+|++++|+|||++++++. .+.+|+|||||++
T Consensus        17 ~~~~i~~~iG~G~fg~Vy~~~~~~~~~vAiK~l~~~~~~~~~~~~E~~~l~~l~h~nIv~~~g~~~-~~~~~lv~Ey~~~   95 (285)
T d1fmka3          17 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVS-EEPIYIVTEYMSK   95 (285)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEEEECCCTT
T ss_pred             HHEEEeeEEeeCCCeEEEEEEECCCCEEEEEEECcccCCHHHHHHHHHHHHhcccCCEeEEEEEEe-cCCeEEEEEecCC
Confidence            679999999999999999998766532           4578999999999999999999999985 4668999999999


Q ss_pred             CCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCceeeeccc
Q 039406          168 NTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNTHVSTRVM  239 (243)
Q Consensus       168 g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~~~~~~~~  239 (243)
                      |+|.+++.......++|..++.++.||+.||.|||.        |++|||||.++++||+|||+|+.+........+...
T Consensus        96 g~l~~~~~~~~~~~l~~~~~~~i~~~i~~gl~~LH~~~ivH~DlKp~NIll~~~~~~kl~DfGla~~~~~~~~~~~~~~~  175 (285)
T d1fmka3          96 GSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAK  175 (285)
T ss_dssp             CBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCCTTC--------------
T ss_pred             CchhhhhhhcccccchHHHHHHHHHHHHHHHHHHhhhheecccccceEEEECCCCcEEEcccchhhhccCCCceeecccc
Confidence            999998875444459999999999999999999986        568999999999999999999987655443334455


Q ss_pred             ccc
Q 039406          240 GTF  242 (243)
Q Consensus       240 GT~  242 (243)
                      ||+
T Consensus       176 gt~  178 (285)
T d1fmka3         176 FPI  178 (285)
T ss_dssp             CCG
T ss_pred             ccc
Confidence            654

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.6e-30  Score=216.44  Aligned_cols=145  Identities=20%  Similarity=0.311  Sum_probs=120.0

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCc-------------------hhHHHHHHHHHHHHhc-CCCccceEEEEEEeCCe
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGK-------------------EGEREFQAEVEIISRV-HHKHLVSLVGYYTAGSQ  157 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~-------------------~~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~  157 (243)
                      .++|++.++||+|+||.||+|++....                   .....+.+|+.+|.++ +|||||++++++.+.+.
T Consensus        36 ~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~  115 (325)
T d1rjba_          36 RENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSGP  115 (325)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred             HHHeEEeeEEeeCCCeEEEEEEEcCCCcccceeEEEEEEeccccCHHHHHHHHHHHHHHHHhcCCCcEeEEEEEEeeCCe
Confidence            367899999999999999999865321                   1345788999999998 89999999999999999


Q ss_pred             eEEEEeccCCCCHHHHhccCCC---------------------CCCCHHHHHHHHHHHHHhhhHhhc--------CCCcE
Q 039406          158 RMLVYEFVLNNTLVFHLHGKGQ---------------------PTMDWPTRIKIALGSAKGLAYLHD--------DLANI  208 (243)
Q Consensus       158 ~~lv~e~~~~g~L~~~l~~~~~---------------------~~l~~~~~~~i~~~i~~~l~~lH~--------~~~Ni  208 (243)
                      +|||||||++|+|.+++..+..                     ..+++..++.++.|++.||.|||.        ||+||
T Consensus       116 ~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~yLH~~~IiHRDlKp~Ni  195 (325)
T d1rjba_         116 IYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSCVHRDLAARNV  195 (325)
T ss_dssp             CEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHTTEEETTCSGGGE
T ss_pred             EEEEEEcCCCCcHHHHHHhccCCCcchhhhhccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCchhcc
Confidence            9999999999999999975432                     247899999999999999999976        56899


Q ss_pred             EECCCCcEEEeccCCceecCCCCce-eeecccccc
Q 039406          209 LLDFKFEAKVADFGLAKIASDVNTH-VSTRVMGTF  242 (243)
Q Consensus       209 Ll~~~~~~kl~DFG~a~~~~~~~~~-~~~~~~GT~  242 (243)
                      |++.++++||+|||+|+........ .....+||+
T Consensus       196 ll~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~  230 (325)
T d1rjba_         196 LVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPV  230 (325)
T ss_dssp             EEETTTEEEECCCGGGSCGGGCTTSEEETTEEECG
T ss_pred             ccccCCeEEEeeccccccccCCCceeeeccccCCC
Confidence            9999999999999999987554432 233456665

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.1e-29  Score=208.92  Aligned_cols=131  Identities=28%  Similarity=0.400  Sum_probs=111.3

Q ss_pred             CCCCccce-eeecCceEEEEEEecCC----------------chhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEE
Q 039406           99 DGFSDANL-LRQDGFGYVHRGVLPNG----------------KEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLV  161 (243)
Q Consensus        99 ~~~~~~~~-lg~G~~g~V~~~~~~~~----------------~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv  161 (243)
                      ++|...+. ||+|+||.||+|.++..                +...+.|.+|+++|++++|||||++++++.+ +.+|||
T Consensus         8 ~~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~~-~~~~lv   86 (285)
T d1u59a_           8 DNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EALMLV   86 (285)
T ss_dssp             GGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEES-SSEEEE
T ss_pred             cCeEECCcEEecccCeEEEEEEEecCCCcEEEEEEEEChhcCHHHHHHHHHHHHHHHhCCCCCEeeEeeeecc-CeEEEE
Confidence            45666664 99999999999975432                1245779999999999999999999999865 568999


Q ss_pred             EeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCC
Q 039406          162 YEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVN  231 (243)
Q Consensus       162 ~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~  231 (243)
                      ||||++|+|.+++...+. .+++..++.++.|++.||.|||.        |++|||++.++.+||+|||+|+.+....
T Consensus        87 mE~~~~g~L~~~l~~~~~-~l~~~~~~~i~~qi~~gL~ylH~~~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~  163 (285)
T d1u59a_          87 MEMAGGGPLHKFLVGKRE-EIPVSNVAELLHQVSMGMKYLEEKNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADD  163 (285)
T ss_dssp             EECCTTEEHHHHHTTCTT-TSCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEEETTEEEECCCTTCEECTTCS
T ss_pred             EEeCCCCcHHHHhhcccc-CCCHHHHHHHHHHHHHHHHHHHhCCeecCcCchhheeeccCCceeeccchhhhcccccc
Confidence            999999999998865433 59999999999999999999976        5689999999999999999999886544

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=1.1e-29  Score=214.52  Aligned_cols=138  Identities=25%  Similarity=0.278  Sum_probs=121.3

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVY  162 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  162 (243)
                      ++|++++.||+|+||.||+|+++.+.+                ..+.+.+|+.+|+.++|||||++++++.+.+.+|+||
T Consensus        41 d~y~i~~~lG~G~fg~Vy~a~~~~~g~~~AvK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~v~  120 (350)
T d1rdqe_          41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVM  120 (350)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             cCeEEEEEeecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHHcCCCcEeeccccccccccccccc
Confidence            679999999999999999998775432                3456889999999999999999999999999999999


Q ss_pred             eccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCcee
Q 039406          163 EFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNTHV  234 (243)
Q Consensus       163 e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~~~  234 (243)
                      ||+.+|+|.+++...+  .+++..++.++.||+.||.|||.        ||+||||+.+|++||+|||+|+.+....   
T Consensus       121 e~~~~g~l~~~l~~~~--~l~e~~~~~i~~qi~~aL~yLH~~~iiHRDIKP~NILl~~~g~ikL~DFG~a~~~~~~~---  195 (350)
T d1rdqe_         121 EYVAGGEMFSHLRRIG--RFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRT---  195 (350)
T ss_dssp             ECCTTCBHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECSSCB---
T ss_pred             ccccccchhhhHhhcC--CCCHHHHHHHHHHHHHHHHHHHhCCEecCcCCHHHcccCCCCCEEeeeceeeeeccccc---
Confidence            9999999999987654  49999999999999999999976        5699999999999999999999876432   


Q ss_pred             eecccccc
Q 039406          235 STRVMGTF  242 (243)
Q Consensus       235 ~~~~~GT~  242 (243)
                       .+.+||+
T Consensus       196 -~~~~Gt~  202 (350)
T d1rdqe_         196 -WTLCGTP  202 (350)
T ss_dssp             -CCCEECG
T ss_pred             -ccccCcc
Confidence             2456775

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.96  E-value=1.2e-29  Score=215.49  Aligned_cols=140  Identities=22%  Similarity=0.277  Sum_probs=117.9

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCch----------------hHHHHHH---HHHHHHhcCCCccceEEEEEEeCCee
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQA---EVEIISRVHHKHLVSLVGYYTAGSQR  158 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~---E~~~l~~l~hp~iv~~~~~~~~~~~~  158 (243)
                      .++|.+.++||+|+||.||+|+...+.+                ....+.+   |+.+|+.++|||||+++++|.+.+.+
T Consensus         3 lddy~i~~~lG~G~fg~Vy~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~~~~~~~   82 (364)
T d1omwa3           3 MNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKL   82 (364)
T ss_dssp             STTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEE
T ss_pred             HHhCeeeeEEecCCCeEEEEEEECCCCCEEEEEEEchHHcchhhHHHHHHHHHHHHHHHhcCCCCcEEEEEEEEEECCEE
Confidence            3789999999999999999999776532                1122333   46777888999999999999999999


Q ss_pred             EEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          159 MLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       159 ~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      |||||||+||+|.+++....  .+++..++.++.||+.||.|||.        ||+||||+.+|.+||+|||+|+.+...
T Consensus        83 ~ivmE~~~gg~L~~~l~~~~--~~~e~~~~~~~~qi~~aL~ylH~~~iiHrDlKP~NILl~~~g~iKl~DFGla~~~~~~  160 (364)
T d1omwa3          83 SFILDLMNGGDLHYHLSQHG--VFSEADMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKK  160 (364)
T ss_dssp             EEEECCCCSCBHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECSSSCEEECCCTTCEECSSS
T ss_pred             EEEEEecCCCcHHHHHHhcc--cccHHHHHHHHHHHHHHHHHHHHCCccceeeccceeEEcCCCcEEEeeeceeeecCCC
Confidence            99999999999999997654  48999999999999999999976        579999999999999999999987654


Q ss_pred             Cceeeecccccc
Q 039406          231 NTHVSTRVMGTF  242 (243)
Q Consensus       231 ~~~~~~~~~GT~  242 (243)
                      ..   ...+||+
T Consensus       161 ~~---~~~~GT~  169 (364)
T d1omwa3         161 KP---HASVGTH  169 (364)
T ss_dssp             CC---CSCCSCG
T ss_pred             cc---ccccccc
Confidence            32   3456776

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=5.1e-30  Score=209.68  Aligned_cols=143  Identities=22%  Similarity=0.311  Sum_probs=107.5

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCc-----------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEE
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGK-----------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRML  160 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~-----------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~l  160 (243)
                      .++|++.+.||+|+||.||+|++...+                 ...+.+.+|+.+|++++|||||++++++. ++.+|+
T Consensus         6 ~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~~~~~i   84 (273)
T d1mp8a_           6 RERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPVWI   84 (273)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-SSSCEE
T ss_pred             HHHeEEEEEEeeCCCcEEEEEEEecCCceeEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEe-cCeEEE
Confidence            367999999999999999999865332                 23567899999999999999999999985 567899


Q ss_pred             EEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCc
Q 039406          161 VYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNT  232 (243)
Q Consensus       161 v~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~  232 (243)
                      |||||.+|+|.+++..... .+++..++.++.|++.||.|||.        |++|||++.++.+||+|||+|+.+.....
T Consensus        85 v~E~~~~g~l~~~~~~~~~-~l~~~~~~~~~~qi~~gl~ylH~~~iiHrDlKp~NIll~~~~~~Kl~DfG~a~~~~~~~~  163 (273)
T d1mp8a_          85 IMELCTLGELRSFLQVRKY-SLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTY  163 (273)
T ss_dssp             EEECCTTEEHHHHHHHTTT-TSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECC------------
T ss_pred             EEEeccCCcHHhhhhccCC-CCCHHHHHHHHHHHHHHhhhhcccCeeccccchhheeecCCCcEEEccchhheeccCCcc
Confidence            9999999999998765443 58999999999999999999976        46899999999999999999998765544


Q ss_pred             eeeecccccc
Q 039406          233 HVSTRVMGTF  242 (243)
Q Consensus       233 ~~~~~~~GT~  242 (243)
                      ...+...||+
T Consensus       164 ~~~~~~~gt~  173 (273)
T d1mp8a_         164 YKASKGKLPI  173 (273)
T ss_dssp             -------CCG
T ss_pred             eeccceecCc
Confidence            4444455664

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3e-29  Score=205.48  Aligned_cols=135  Identities=24%  Similarity=0.305  Sum_probs=111.2

Q ss_pred             ceeeecCceEEEEEEecCCc-----------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEeccCC
Q 039406          105 NLLRQDGFGYVHRGVLPNGK-----------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEFVLN  167 (243)
Q Consensus       105 ~~lg~G~~g~V~~~~~~~~~-----------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~  167 (243)
                      +.||+|+||.||+|.++...                 ...+.|.+|+++|++++|||||++++++.+ +..|||||||++
T Consensus        13 k~iG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~g~~~~-~~~~lvmE~~~~   91 (277)
T d1xbba_          13 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA-ESWMLVMEMAEL   91 (277)
T ss_dssp             EEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEES-SSEEEEEECCTT
T ss_pred             CCcccCCCeEEEEEEEccCCcCeEEEEEEEChhhCCHHHHHHHHHHHHHHHhCCCCCCceEEEEecc-CCEEEEEEcCCC
Confidence            57999999999999764321                 135679999999999999999999999865 467899999999


Q ss_pred             CCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCceee--ec
Q 039406          168 NTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNTHVS--TR  237 (243)
Q Consensus       168 g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~~~~--~~  237 (243)
                      |+|.+++....  .+++..++.++.||+.||.|||.        |++|||++.++.+||+|||+|+.+........  ..
T Consensus        92 g~L~~~l~~~~--~l~~~~~~~i~~qi~~gl~ylH~~~iiHrDlKp~Nill~~~~~~kl~DFGla~~~~~~~~~~~~~~~  169 (277)
T d1xbba_          92 GPLNKYLQQNR--HVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTH  169 (277)
T ss_dssp             EEHHHHHHHCT--TCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCCTTCEECCTTCSEEEC---
T ss_pred             CcHHHHHhhcc--CCCHHHHHHHHHHHHHHHhhHHhCCcccCCCcchhhcccccCcccccchhhhhhccccccccccccc
Confidence            99999997654  49999999999999999999976        56899999999999999999998765443322  23


Q ss_pred             ccccc
Q 039406          238 VMGTF  242 (243)
Q Consensus       238 ~~GT~  242 (243)
                      ..||+
T Consensus       170 ~~gt~  174 (277)
T d1xbba_         170 GKWPV  174 (277)
T ss_dssp             -CCCG
T ss_pred             cCCCc
Confidence            45654

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.6e-29  Score=207.81  Aligned_cols=131  Identities=24%  Similarity=0.418  Sum_probs=109.8

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc------------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK------------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRML  160 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~------------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~l  160 (243)
                      +.|...++||+|+||.||+|.++.+.                  .....|.+|+.+|++++|||||++++++.+.+.+++
T Consensus         7 ~~~~~~~~iG~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~~~g~~~~~~~~~~   86 (283)
T d1mqba_           7 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMMI   86 (283)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEE
T ss_pred             HHeEeeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEEECcccChHHHHHHHHHHHHHHhcCCCCEeeeeEEEecCCceEE
Confidence            56888999999999999999765431                  234578999999999999999999999999999999


Q ss_pred             EEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          161 VYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       161 v~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      |||||.+++|.+++..... .+++..++.++.|++.||.|||.        |++||||+.++.+||+|||+|+.+...
T Consensus        87 v~e~~~~~~l~~~~~~~~~-~~~~~~~~~i~~~i~~gl~~lH~~~iiHrDlKp~NILl~~~~~~Kl~DFGla~~~~~~  163 (283)
T d1mqba_          87 ITEYMENGALDKFLREKDG-EFSVLQLVGMLRGIAAGMKYLANMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDD  163 (283)
T ss_dssp             EEECCTTEEHHHHHHHTTT-CSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCCCC-------
T ss_pred             EEEecccCcchhhhhcccc-cccHHHHHHHHHHHHHhhhhccccccccCccccceEEECCCCeEEEcccchhhcccCC
Confidence            9999999999988865543 59999999999999999999976        568999999999999999999987554

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.2e-29  Score=209.26  Aligned_cols=141  Identities=23%  Similarity=0.328  Sum_probs=119.7

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch----------------hHHHHHHHHHHHH-hcCCCccceEEEEEEeCCeeEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE----------------GEREFQAEVEIIS-RVHHKHLVSLVGYYTAGSQRMLV  161 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~----------------~~~~~~~E~~~l~-~l~hp~iv~~~~~~~~~~~~~lv  161 (243)
                      ++|.+.+.||+|+||+||+|+.+.+.+                ..+.+.+|..+|. .++|||||++++++.+++.+|||
T Consensus         2 ddy~i~~~iG~G~fg~Vy~~~~~~t~~~vAvK~i~k~~~~~~~~~~~~~~e~~~l~~~~~hp~Iv~~~~~~~~~~~~yiv   81 (320)
T d1xjda_           2 EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLFFV   81 (320)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEE
T ss_pred             CCeEEeeEEecCCCcEEEEEEECCCCCEEEEEEEchhhccChHHHHHHHHHHHHHHHhCCCCcEEEEEEEEccCCceeEE
Confidence            689999999999999999998876542                2345677777765 68999999999999999999999


Q ss_pred             EeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCce
Q 039406          162 YEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNTH  233 (243)
Q Consensus       162 ~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~~  233 (243)
                      ||||++|+|.+++....  .+++..++.++.||+.||.|||.        ||+|||++.++++||+|||+|+....... 
T Consensus        82 mEy~~~g~L~~~i~~~~--~~~e~~~~~~~~qi~~al~ylH~~~iiHrDikp~NiL~~~~~~~kl~DFG~a~~~~~~~~-  158 (320)
T d1xjda_          82 MEYLNGGDLMYHIQSCH--KFDLSRATFYAAEIILGLQFLHSKGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDA-  158 (320)
T ss_dssp             EECCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTC-
T ss_pred             EeecCCCcHHHHhhccC--CCCHHHHHHHHHHHHHHHHHHHhCCeeeccCcccceeecCCCceeccccchhhhcccccc-
Confidence            99999999999997654  48999999999999999999976        56899999999999999999997654433 


Q ss_pred             eeecccccc
Q 039406          234 VSTRVMGTF  242 (243)
Q Consensus       234 ~~~~~~GT~  242 (243)
                      ..+..+||+
T Consensus       159 ~~~~~~gt~  167 (320)
T d1xjda_         159 KTNTFCGTP  167 (320)
T ss_dssp             CBCCCCSCG
T ss_pred             cccccCCCC
Confidence            233467775

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.1e-29  Score=206.69  Aligned_cols=142  Identities=20%  Similarity=0.294  Sum_probs=117.6

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch---------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEe
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE---------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYE  163 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~---------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e  163 (243)
                      ++|.+.+.||+|+||.||+|++..+.+               ..+.+.+|+++|++++|||||+++++|.+++.+|+|||
T Consensus         2 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~Hp~Iv~~~~~~~~~~~~~iv~e   81 (298)
T d1gz8a_           2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFE   81 (298)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEC-------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             CCCEeccEEecCcCeEEEEEEECCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEEeccccccccceeEEEe
Confidence            789999999999999999998765421               35678899999999999999999999999999999999


Q ss_pred             ccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCceee
Q 039406          164 FVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNTHVS  235 (243)
Q Consensus       164 ~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~~~~  235 (243)
                      ||.+ .+.+++.......+++..++.++.|++.||.|||.        ||+|||++.++.+||+|||+|+........ .
T Consensus        82 ~~~~-~~~~~~~~~~~~~l~e~~~~~~~~qil~~L~yLH~~~IiHrDiKpeNIl~~~~~~~kl~DFG~a~~~~~~~~~-~  159 (298)
T d1gz8a_          82 FLHQ-DLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRT-Y  159 (298)
T ss_dssp             CCSE-EHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECSTTHHHHHCCCSBC-T
T ss_pred             ecCC-chhhhhhhhcccCCCHHHHHHHHHHHHHHHHHhhcCCEEccccCchheeecccCcceeccCCcceeccCCccc-c
Confidence            9976 44444443434469999999999999999999976        569999999999999999999987654432 2


Q ss_pred             ecccccc
Q 039406          236 TRVMGTF  242 (243)
Q Consensus       236 ~~~~GT~  242 (243)
                      ...+||+
T Consensus       160 ~~~~gt~  166 (298)
T d1gz8a_         160 THEVVTL  166 (298)
T ss_dssp             TCCBCCC
T ss_pred             eeecccc
Confidence            2245554

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=5.7e-29  Score=208.99  Aligned_cols=144  Identities=22%  Similarity=0.240  Sum_probs=119.1

Q ss_pred             hCCCCccc-eeeecCceEEEEEEecCCch--------hHHHHHHHHHHHHhc-CCCccceEEEEEEe----CCeeEEEEe
Q 039406           98 TDGFSDAN-LLRQDGFGYVHRGVLPNGKE--------GEREFQAEVEIISRV-HHKHLVSLVGYYTA----GSQRMLVYE  163 (243)
Q Consensus        98 ~~~~~~~~-~lg~G~~g~V~~~~~~~~~~--------~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~----~~~~~lv~e  163 (243)
                      .++|.+.. .||+|+||.||+|++..+.+        ....+.+|++++.++ +|||||+++++|.+    ++.+|||||
T Consensus        10 ~~~y~i~~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~E~~~~~~~~~hpnIv~l~~~~~~~~~~~~~~~ivmE   89 (335)
T d2ozaa1          10 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDCPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVME   89 (335)
T ss_dssp             GGTEEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECSHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEEE
T ss_pred             ccCEEEeeEEeeeccCeEEEEEEECCCCCEEEEEEECCcHHHHHHHHHHHHhcCCCCCCeEEEEEeecccCCCEEEEEEE
Confidence            47888764 69999999999999876543        346788999987665 89999999999876    467999999


Q ss_pred             ccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECC---CCcEEEeccCCceecCCCCc
Q 039406          164 FVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDF---KFEAKVADFGLAKIASDVNT  232 (243)
Q Consensus       164 ~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~---~~~~kl~DFG~a~~~~~~~~  232 (243)
                      ||+||+|.+++..++...+++..++.|+.|++.||.|||.        ||+|||++.   .+.+||+|||+|+.......
T Consensus        90 y~~gg~L~~~i~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~iiHRDiKp~NIll~~~~~~~~~Kl~DFG~a~~~~~~~~  169 (335)
T d2ozaa1          90 CLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNS  169 (335)
T ss_dssp             CCCSEEHHHHHHSCSCCCEEHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCSSTTCCEEECCCTTCEECCCCCC
T ss_pred             CCCCCcHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHcCCccccccccccccccccccccccccccceeeeccCCCc
Confidence            9999999999987655569999999999999999999976        569999975   46799999999998765443


Q ss_pred             eeeeccccccC
Q 039406          233 HVSTRVMGTFG  243 (243)
Q Consensus       233 ~~~~~~~GT~G  243 (243)
                        ....+||++
T Consensus       170 --~~~~~gt~~  178 (335)
T d2ozaa1         170 --LTTPCYTPY  178 (335)
T ss_dssp             --CCCCSCCCS
T ss_pred             --cccccCCcc
Confidence              234577763

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.7e-29  Score=207.04  Aligned_cols=137  Identities=25%  Similarity=0.299  Sum_probs=113.9

Q ss_pred             ccceeeecCceEEEEEEecCCch------------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEec
Q 039406          103 DANLLRQDGFGYVHRGVLPNGKE------------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEF  164 (243)
Q Consensus       103 ~~~~lg~G~~g~V~~~~~~~~~~------------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  164 (243)
                      .+++||+|+||+||+|+++.+.+                  ..+.+.+|+.+|++++|||||++++++.+++.+||||||
T Consensus         2 ~l~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~~~~~~~~~ivmE~   81 (299)
T d1ua2a_           2 KLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNISLVFDF   81 (299)
T ss_dssp             EEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCCEEEEEC
T ss_pred             cceEeccCcCeEEEEEEECCCCcEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHhCCCCCEeEEEeeeccCCceeehhhh
Confidence            46799999999999998765432                  124678999999999999999999999999999999999


Q ss_pred             cCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCceeee
Q 039406          165 VLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNTHVST  236 (243)
Q Consensus       165 ~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~~~~~  236 (243)
                      |.++++..++....  .+++..++.++.||+.||.|||.        ||+|||++.++.+||+|||+|+.+....... .
T Consensus        82 ~~~~~~~~~~~~~~--~l~~~~~~~~~~qil~aL~~lH~~~iiHrDiKp~NIli~~~~~~KL~DFG~a~~~~~~~~~~-~  158 (299)
T d1ua2a_          82 METDLEVIIKDNSL--VLTPSHIKAYMLMTLQGLEYLHQHWILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNRAY-T  158 (299)
T ss_dssp             CSEEHHHHHTTCCS--SCCSSHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCCGGGSTTTSCCCCC-C
T ss_pred             hcchHHhhhhhccc--CCCHHHHHHHHHHHHHHHHHhhccceecccCCcceEEecCCCccccccCccccccCCCcccc-c
Confidence            99887776664333  48888999999999999999976        5699999999999999999998876544322 2


Q ss_pred             cccccc
Q 039406          237 RVMGTF  242 (243)
Q Consensus       237 ~~~GT~  242 (243)
                      ..+||+
T Consensus       159 ~~~gt~  164 (299)
T d1ua2a_         159 HQVVTR  164 (299)
T ss_dssp             CSCCCC
T ss_pred             ceecCh
Confidence            356665

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.3e-28  Score=205.31  Aligned_cols=142  Identities=20%  Similarity=0.317  Sum_probs=115.2

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc------------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK------------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRML  160 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~------------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~l  160 (243)
                      ++|+++++||+|+||.||+|.+..+.                  +..+.|.+|+++|++++|||||++++++.++ ..++
T Consensus         9 ~dy~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~-~~~~   87 (317)
T d1xkka_           9 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS-TVQL   87 (317)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEECC----CCEEEEEEEECC----CTHHHHHHHHHHHHHCCCTTBCCEEEEEESS-SEEE
T ss_pred             HHCEEeeEEecCCCeEEEEEEEcCCCCEEEEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecC-CeeE
Confidence            56999999999999999999764331                  2457799999999999999999999999864 5678


Q ss_pred             EEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCCc
Q 039406          161 VYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVNT  232 (243)
Q Consensus       161 v~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~~  232 (243)
                      +|||+.+|+|.+++..... .+++..++.++.||+.||.|||.        |++||||+.++.+||+|||+|+.+.....
T Consensus        88 v~e~~~~~~l~~~~~~~~~-~~~~~~~~~i~~qi~~gl~yLH~~~iiHrDlKp~NIll~~~~~~kl~DFGla~~~~~~~~  166 (317)
T d1xkka_          88 ITQLMPFGCLLDYVREHKD-NIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEK  166 (317)
T ss_dssp             EEECCTTCBHHHHHHHTSS-SCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEETTEEEECCCSHHHHTTTTCC
T ss_pred             EEEeccCCccccccccccc-CCCHHHHHHHHHHHHHHHHHHHHcCcccCcchhhcceeCCCCCeEeeccccceecccccc
Confidence            8999999999988876544 58999999999999999999976        56899999999999999999998765443


Q ss_pred             ee-eecccccc
Q 039406          233 HV-STRVMGTF  242 (243)
Q Consensus       233 ~~-~~~~~GT~  242 (243)
                      .. .....||+
T Consensus       167 ~~~~~~~~gt~  177 (317)
T d1xkka_         167 EYHAEGGKVPI  177 (317)
T ss_dssp             --------CCT
T ss_pred             cccccccccCc
Confidence            32 22345664

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.3e-28  Score=204.67  Aligned_cols=131  Identities=24%  Similarity=0.441  Sum_probs=114.3

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc----------------hhHHHHHHHHHHHHhc-CCCccceEEEEEEeCCeeEEE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK----------------EGEREFQAEVEIISRV-HHKHLVSLVGYYTAGSQRMLV  161 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~----------------~~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~~~lv  161 (243)
                      ++|++.++||+|+||.||+|+++.+.                +..+.+.+|+++|+++ +|||||++++++.+++.+|||
T Consensus        10 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~iV   89 (309)
T d1fvra_          10 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLA   89 (309)
T ss_dssp             GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEE
T ss_pred             HHcEEEEEEeeCCCcEEEEEEECCCCeEEEEEEEEECcccChHHHHHHHHHHHHHHhccCCCCEeeEEEEEecCCeeEEE
Confidence            68899999999999999999875532                1345789999999999 799999999999999999999


Q ss_pred             EeccCCCCHHHHhccC--------------CCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEe
Q 039406          162 YEFVLNNTLVFHLHGK--------------GQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVA  219 (243)
Q Consensus       162 ~e~~~~g~L~~~l~~~--------------~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~  219 (243)
                      ||||++|+|.+++...              ....+++..+..++.||+.||.|||.        |++|||++.++.+||+
T Consensus        90 ~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~~lH~~~iiHrDlkp~NIL~~~~~~~kl~  169 (309)
T d1fvra_          90 IEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIA  169 (309)
T ss_dssp             ECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECGGGCEEEC
T ss_pred             EEecCCCcHHHHHhhccccccchhhhccccccCCCCHHHHHHHHHHHHHHHHhhhcCCccccccccceEEEcCCCceEEc
Confidence            9999999999998654              12458999999999999999999976        5689999999999999


Q ss_pred             ccCCceecCC
Q 039406          220 DFGLAKIASD  229 (243)
Q Consensus       220 DFG~a~~~~~  229 (243)
                      |||+|+....
T Consensus       170 DfG~a~~~~~  179 (309)
T d1fvra_         170 DFGLSRGQEV  179 (309)
T ss_dssp             CTTCEESSCE
T ss_pred             cccccccccc
Confidence            9999987653

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.95  E-value=1.3e-28  Score=203.87  Aligned_cols=150  Identities=21%  Similarity=0.344  Sum_probs=121.4

Q ss_pred             HHHHHhCCCCccceeeecCceEEEEEEecCC-------------------chhHHHHHHHHHHHHhcCCCccceEEEEEE
Q 039406           93 ELARATDGFSDANLLRQDGFGYVHRGVLPNG-------------------KEGEREFQAEVEIISRVHHKHLVSLVGYYT  153 (243)
Q Consensus        93 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~-------------------~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~  153 (243)
                      +++...++|++.+.||+|+||.||+|+++..                   ....+.|.+|+.+|++++|+||+++++++.
T Consensus         7 ~~e~p~~~~~~~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~   86 (301)
T d1lufa_           7 SLEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCA   86 (301)
T ss_dssp             HTBCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC
T ss_pred             hccCCHHHcEEeEEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChhcChHHHHHHHHHHHHHHhcCCCCcccceeeec
Confidence            3444567899999999999999999986431                   123567999999999999999999999999


Q ss_pred             eCCeeEEEEeccCCCCHHHHhccCC----------------------CCCCCHHHHHHHHHHHHHhhhHhhc--------
Q 039406          154 AGSQRMLVYEFVLNNTLVFHLHGKG----------------------QPTMDWPTRIKIALGSAKGLAYLHD--------  203 (243)
Q Consensus       154 ~~~~~~lv~e~~~~g~L~~~l~~~~----------------------~~~l~~~~~~~i~~~i~~~l~~lH~--------  203 (243)
                      +.+..++||||+.+|+|.+++....                      ...+++..++.++.|++.||.|||.        
T Consensus        87 ~~~~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~ylH~~~ivHrDl  166 (301)
T d1lufa_          87 VGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHRDL  166 (301)
T ss_dssp             SSSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCC
T ss_pred             cCCceEEEEEecCCCcHHHHHHhcCccccccccccccchhhhccccCCCCCCHHHHHHHHHHHHHHhhhcccCCeEeeEE
Confidence            9999999999999999999986432                      1247889999999999999999976        


Q ss_pred             CCCcEEECCCCcEEEeccCCceecCCCCce-eeecccccc
Q 039406          204 DLANILLDFKFEAKVADFGLAKIASDVNTH-VSTRVMGTF  242 (243)
Q Consensus       204 ~~~NiLl~~~~~~kl~DFG~a~~~~~~~~~-~~~~~~GT~  242 (243)
                      |++|||||.++++||+|||+|+.+...... ..++.+||+
T Consensus       167 Kp~NILld~~~~~Kl~DFGls~~~~~~~~~~~~~~~~~~~  206 (301)
T d1lufa_         167 ATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPI  206 (301)
T ss_dssp             SGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCG
T ss_pred             cccceEECCCCcEEEccchhheeccCCccccccCCCCcCc
Confidence            468999999999999999999977544322 223345554

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.95  E-value=4.5e-28  Score=198.37  Aligned_cols=144  Identities=24%  Similarity=0.295  Sum_probs=113.9

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCc----------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCC----e
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGK----------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGS----Q  157 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~----------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~----~  157 (243)
                      .++|++.+.||+|+||.||+|++..+.                ...+.+.+|+++|+.++|||||++++++...+    .
T Consensus         6 ~drY~i~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~~l~~~~hpniv~~~~~~~~~~~~~~~   85 (277)
T d1o6ya_           6 SDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPL   85 (277)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTTTCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEECSSSEE
T ss_pred             cceeEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhcCCCCCCcccceeeeccCCCce
Confidence            377999999999999999999865432                23567899999999999999999999988654    3


Q ss_pred             eEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          158 RMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       158 ~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      +|||||||+|++|.+++...+  .+++..++.++.|++.||.|||+        ||+|||++.++.++|+|||+++....
T Consensus        86 ~~lvmE~~~g~~L~~~~~~~~--~l~~~~~~~i~~qi~~al~~lH~~~iiHrDiKP~NIll~~~~~~~l~d~~~~~~~~~  163 (277)
T d1o6ya_          86 PYIVMEYVDGVTLRDIVHTEG--PMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIAD  163 (277)
T ss_dssp             EEEEEECCCEEEHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTSCEEECCCTTCEECC-
T ss_pred             EEEEEECCCCCEehhhhcccC--CCCHHHHHHHHHHHHHHHHHHHhCCccCccccCcccccCccccceeehhhhhhhhcc
Confidence            899999999999999887654  49999999999999999999976        67999999999999999999987644


Q ss_pred             CCc--eeeeccccccC
Q 039406          230 VNT--HVSTRVMGTFG  243 (243)
Q Consensus       230 ~~~--~~~~~~~GT~G  243 (243)
                      ...  ......+||++
T Consensus       164 ~~~~~~~~~~~~Gt~~  179 (277)
T d1o6ya_         164 SGNSVTQTAAVIGTAQ  179 (277)
T ss_dssp             ---------------T
T ss_pred             ccccccccccccCccc
Confidence            322  22334577763

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.4e-27  Score=197.08  Aligned_cols=127  Identities=27%  Similarity=0.399  Sum_probs=109.1

Q ss_pred             cceeeecCceEEEEEEecCCc-----------------hhHHHHHHHHHHHHhcCCCccceEEEEEEe-CCeeEEEEecc
Q 039406          104 ANLLRQDGFGYVHRGVLPNGK-----------------EGEREFQAEVEIISRVHHKHLVSLVGYYTA-GSQRMLVYEFV  165 (243)
Q Consensus       104 ~~~lg~G~~g~V~~~~~~~~~-----------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~~~~lv~e~~  165 (243)
                      .++||+|+||+||+|++..+.                 ...+.|.+|+++|++++|||||++++++.. ++..++|||||
T Consensus        32 ~~~iG~G~fg~Vyk~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~E~~  111 (311)
T d1r0pa_          32 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYM  111 (311)
T ss_dssp             EEEEEEETTEEEEEEEECC----CEEEEEEEECCCCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEETTTEEEEEEECC
T ss_pred             ceEEeecCCeEEEEEEEECCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCEeEEeEEEEecCCceEEEEEEe
Confidence            468999999999999864431                 245779999999999999999999999875 56899999999


Q ss_pred             CCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCC
Q 039406          166 LNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVN  231 (243)
Q Consensus       166 ~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~  231 (243)
                      ++|+|.+++..... .+.+..++.++.|++.||.|||.        |++||||++++.+||+|||+++.+....
T Consensus       112 ~~g~l~~~~~~~~~-~~~~~~~~~i~~qia~gL~~lH~~~iiHrDLK~~NILl~~~~~~kL~DFG~~~~~~~~~  184 (311)
T d1r0pa_         112 KHGDLRNFIRNETH-NPTVKDLIGFGLQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKE  184 (311)
T ss_dssp             TTCBHHHHHHCTTC-CCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTCCEEECSSGGGCCTTTTT
T ss_pred             ecCchhhhhccccc-cchHHHHHHHHHHHHHhhhhhcccCcccCCccHHhEeECCCCCEEEecccchhhccccc
Confidence            99999999876544 47888999999999999999976        4589999999999999999999876543

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.7e-28  Score=198.54  Aligned_cols=132  Identities=24%  Similarity=0.339  Sum_probs=109.4

Q ss_pred             CCCCccceeeecCceEEEEEEecCC-------------------chhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeE
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNG-------------------KEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRM  159 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~-------------------~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~  159 (243)
                      ++|++.+.||+|+||.||+|++...                   .+..+.|.+|+.+|++++|||||++++++.+ +.++
T Consensus         8 ~d~~~~~~iG~G~fg~Vy~~~~~~~~~~~~~vAiK~l~~~~~~~~~~~~~~~~Ei~~l~~l~H~nIv~~~g~~~~-~~~~   86 (273)
T d1u46a_           8 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLT-PPMK   86 (273)
T ss_dssp             GGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCE
T ss_pred             HHeEEEEEEecCCCeEEEEEEEECCCCcEEEEEEEEEChhhcCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEee-cchh
Confidence            5799999999999999999975432                   1245678999999999999999999999975 5778


Q ss_pred             EEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCC
Q 039406          160 LVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVN  231 (243)
Q Consensus       160 lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~  231 (243)
                      +|||||++|+|.+++..... .+++..++.++.|++.||.|||.        |++|||++.++.+||+|||+++.+....
T Consensus        87 lv~e~~~~~~l~~~~~~~~~-~l~~~~~~~~~~qi~~gl~ylH~~~iiHrDikp~NIll~~~~~vkl~DfGl~~~~~~~~  165 (273)
T d1u46a_          87 MVTELAPLGSLLDRLRKHQG-HFLLGTLSRYAVQVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQND  165 (273)
T ss_dssp             EEEECCTTCBHHHHHHHHGG-GSCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEEEETTEEEECCCTTCEECCC-C
T ss_pred             eeeeeecCcchhhhhhcccC-CCCHHHHHHHHHHHHHHHHHhhhCCEeeeeecHHHhccccccceeeccchhhhhcccCC
Confidence            99999999999988765433 49999999999999999999976        4689999999999999999999886554


Q ss_pred             c
Q 039406          232 T  232 (243)
Q Consensus       232 ~  232 (243)
                      .
T Consensus       166 ~  166 (273)
T d1u46a_         166 D  166 (273)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.4e-28  Score=199.89  Aligned_cols=133  Identities=26%  Similarity=0.398  Sum_probs=108.6

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCc---------hhHHHHHHHHHHHHhcCCCccceEEEEEEe-CCeeEEEEeccCC
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGK---------EGEREFQAEVEIISRVHHKHLVSLVGYYTA-GSQRMLVYEFVLN  167 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~---------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~~~~lv~e~~~~  167 (243)
                      .++|++.+.||+|+||.||+|++++..         ...+.+.+|+++|++++|||||++++++.+ .+.+|||||||++
T Consensus         6 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~vAvK~i~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~ey~~~   85 (262)
T d1byga_           6 MKELKLLQTIGKGEFGDVMLGDYRGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAK   85 (262)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTEEEEEEECCCCC--HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECCCTT
T ss_pred             HHHeEEeEEEecCCCeEEEEEEECCeEEEEEEECcHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEecCCcEEEEEeccCC
Confidence            367888999999999999999876432         246789999999999999999999999864 4678999999999


Q ss_pred             CCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          168 NTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       168 g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      |+|.+++..+....+++..++.++.||+.||.|||.        +++|||++.++.+||+|||+++.....
T Consensus        86 g~L~~~l~~~~~~~l~~~~~~~i~~~i~~al~ylH~~~ivH~dlkp~Nil~~~~~~~kl~dfg~s~~~~~~  156 (262)
T d1byga_          86 GSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASST  156 (262)
T ss_dssp             EEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTSCEEECCCCC-------
T ss_pred             CCHHHHHHhcCCCCCCHHHHHHHHHHHHhhccccccCceeccccchHhheecCCCCEeecccccceecCCC
Confidence            999999976543358999999999999999999987        458999999999999999999976543

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=5.1e-28  Score=200.10  Aligned_cols=150  Identities=24%  Similarity=0.268  Sum_probs=112.7

Q ss_pred             HHHHHhCCCCccceeeecCceEEEEEEecCCc-------------------hhHHHHHHHHHHHHhc-CCCccceEEEEE
Q 039406           93 ELARATDGFSDANLLRQDGFGYVHRGVLPNGK-------------------EGEREFQAEVEIISRV-HHKHLVSLVGYY  152 (243)
Q Consensus        93 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~-------------------~~~~~~~~E~~~l~~l-~hp~iv~~~~~~  152 (243)
                      +++...++|++.+.||+|+||.||+|.+....                   ...+.+.+|+.++.++ +|+|||.+++++
T Consensus         7 ~wei~~~~y~~~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~   86 (299)
T d1ywna1           7 KWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGAC   86 (299)
T ss_dssp             HHBCCGGGEEEEEEEEECSSCEEEEEEEESTTSSSCEEEEEEEEC----CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             cccccHHHEEEeeEEeecCCeEEEEEEEcCCCcccCCeEEEEEEEccccCcHHHHHHHHHHHHHHhhcCCCeEEEeeeee
Confidence            33334478999999999999999999764321                   1345678888888887 689999999987


Q ss_pred             EeC-CeeEEEEeccCCCCHHHHhccCC--------------CCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEE
Q 039406          153 TAG-SQRMLVYEFVLNNTLVFHLHGKG--------------QPTMDWPTRIKIALGSAKGLAYLHD--------DLANIL  209 (243)
Q Consensus       153 ~~~-~~~~lv~e~~~~g~L~~~l~~~~--------------~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiL  209 (243)
                      ... +.+++|||||++|+|.+++....              ...+++..++.++.|++.||.|||.        ||+|||
T Consensus        87 ~~~~~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~~ivHrDlKp~NIL  166 (299)
T d1ywna1          87 TKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNIL  166 (299)
T ss_dssp             CSTTSCCEEEEECCTTCBHHHHHHHTGGGBCC-----------CBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEE
T ss_pred             ccCCCeEEEEEEecCCCcHHHHHHhccccccccccchhhhhcccCCHHHHHHHHHHHHHHHHHHHhCCCcCCcCCcccee
Confidence            654 46899999999999999986532              2247899999999999999999975        568999


Q ss_pred             ECCCCcEEEeccCCceecCCCCce-eeecccccc
Q 039406          210 LDFKFEAKVADFGLAKIASDVNTH-VSTRVMGTF  242 (243)
Q Consensus       210 l~~~~~~kl~DFG~a~~~~~~~~~-~~~~~~GT~  242 (243)
                      |+.++++||+|||+|+........ ..+..+||+
T Consensus       167 l~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~  200 (299)
T d1ywna1         167 LSEKNVVKICDFGLARDIYKDPDYVRKGDARLPL  200 (299)
T ss_dssp             ECGGGCEEECC------CCSCTTSCCTTSCCCGG
T ss_pred             ECCCCcEEEccCcchhhccccccccccCceeeCc
Confidence            999999999999999987544332 233456775

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=99.94  E-value=8.2e-28  Score=197.60  Aligned_cols=131  Identities=22%  Similarity=0.303  Sum_probs=114.4

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch--------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEec
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE--------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYEF  164 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~--------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  164 (243)
                      ++|.+.+.||+|+||.||+|+++.++.              ..+.+.+|+.+|++++|||||+++++|.+.+..|++|||
T Consensus         2 ~~Y~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~i~~e~   81 (286)
T d1ob3a_           2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEH   81 (286)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred             CCceeccEEecCCCcEEEEEEeCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEeeeeecccCCceeEEEEe
Confidence            689999999999999999998765421              357899999999999999999999999999999999999


Q ss_pred             cCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCC
Q 039406          165 VLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVN  231 (243)
Q Consensus       165 ~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~  231 (243)
                      +.++.+..+....+  .+++..++.++.||+.||.|||.        ||+|||++.++.+||+|||+|.......
T Consensus        82 ~~~~~~~~~~~~~~--~l~~~~~~~i~~qi~~~L~~LH~~~IvHrDiKp~NIll~~~~~~kl~DfG~a~~~~~~~  154 (286)
T d1ob3a_          82 LDQDLKKLLDVCEG--GLESVTAKSFLLQLLNGIAYCHDRRVLHRDLKPQNLLINREGELKIADFGLARAFGIPV  154 (286)
T ss_dssp             CSEEHHHHHHTSTT--CCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC--
T ss_pred             ehhhhHHHHHhhcC--CcchhhhHHHHHHHHHHHHHhccCcEEecCCCCceeeEcCCCCEEecccccceecccCc
Confidence            98877776665443  59999999999999999999976        5699999999999999999999876543

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=5e-28  Score=197.76  Aligned_cols=139  Identities=21%  Similarity=0.290  Sum_probs=116.2

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch-------------------hHHHHHHHHHHHHhcC--CCccceEEEEEEeCCe
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE-------------------GEREFQAEVEIISRVH--HKHLVSLVGYYTAGSQ  157 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~-------------------~~~~~~~E~~~l~~l~--hp~iv~~~~~~~~~~~  157 (243)
                      ++|++.++||+|+||.||+|+...+.+                   ...++.+|+.+|++++  |||||++++++.+.+.
T Consensus         4 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~~h~nIv~~~~~~~~~~~   83 (273)
T d1xwsa_           4 SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDS   83 (273)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSSE
T ss_pred             CeEEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhccCCCCccEEEEEEeeCCe
Confidence            679999999999999999998765432                   1233678999999996  8999999999999999


Q ss_pred             eEEEEeccCC-CCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECC-CCcEEEeccCCceec
Q 039406          158 RMLVYEFVLN-NTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDF-KFEAKVADFGLAKIA  227 (243)
Q Consensus       158 ~~lv~e~~~~-g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~-~~~~kl~DFG~a~~~  227 (243)
                      +|+||||+.+ +++.+++....  .+++..++.++.|++.||.|||.        ||+|||++. ++.+||+|||+|+..
T Consensus        84 ~~lv~e~~~~~~~l~~~~~~~~--~l~e~~~~~~~~qi~~al~~lH~~~iiHrDiKp~NIll~~~~~~vkl~DFG~a~~~  161 (273)
T d1xwsa_          84 FVLILERPEPVQDLFDFITERG--ALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALL  161 (273)
T ss_dssp             EEEEEECCSSEEEHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEETTTTEEEECCCTTCEEC
T ss_pred             EEEEEEeccCcchHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHHCCCccccCcccceEEecCCCeEEECccccceec
Confidence            9999999976 68888876544  49999999999999999999976        569999985 479999999999986


Q ss_pred             CCCCceeeecccccc
Q 039406          228 SDVNTHVSTRVMGTF  242 (243)
Q Consensus       228 ~~~~~~~~~~~~GT~  242 (243)
                      ....   .++.+||+
T Consensus       162 ~~~~---~~~~~GT~  173 (273)
T d1xwsa_         162 KDTV---YTDFDGTR  173 (273)
T ss_dssp             CSSC---BCCCCSCG
T ss_pred             cccc---ccccccCC
Confidence            5432   23467775

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.7e-27  Score=197.87  Aligned_cols=145  Identities=21%  Similarity=0.324  Sum_probs=118.5

Q ss_pred             hCCCCccceeeecCceEEEEEEecC-------------------CchhHHHHHHHHHHHHhcCCCccceEEEEEEeCCee
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPN-------------------GKEGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQR  158 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~-------------------~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~  158 (243)
                      .++|.+.+.||+|+||.||+|.+..                   ..+....|.+|+.+|++++|+|||++++++..++..
T Consensus        19 ~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~   98 (308)
T d1p4oa_          19 REKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQPT   98 (308)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEECSSSSC
T ss_pred             HHHeEEeeEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECcccChHHHHHHHHHHHHHHHcCCCCEeeeeeEEecCCce
Confidence            3788899999999999999987532                   112345689999999999999999999999999999


Q ss_pred             EEEEeccCCCCHHHHhccC--------CCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccC
Q 039406          159 MLVYEFVLNNTLVFHLHGK--------GQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFG  222 (243)
Q Consensus       159 ~lv~e~~~~g~L~~~l~~~--------~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG  222 (243)
                      ++|||||.+|+|.+++...        ....+++..+..++.+++.||.|||.        |++||||+.++++||+|||
T Consensus        99 ~lv~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~gl~~LH~~~ivHrDlk~~NiLld~~~~~Kl~DFG  178 (308)
T d1p4oa_          99 LVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFG  178 (308)
T ss_dssp             EEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCSGGGEEECTTCCEEECCTT
T ss_pred             eEEEeecCCCCHHHHHHhcccccccccccCCCCHHHHHHHHHHHHHHHHHHhhCCeeeceEcCCceeecCCceEEEeecc
Confidence            9999999999999987642        11246889999999999999999976        4589999999999999999


Q ss_pred             CceecCCCCcee-eecccccc
Q 039406          223 LAKIASDVNTHV-STRVMGTF  242 (243)
Q Consensus       223 ~a~~~~~~~~~~-~~~~~GT~  242 (243)
                      +|+.+....... .+...||+
T Consensus       179 la~~~~~~~~~~~~~~~~~t~  199 (308)
T d1p4oa_         179 MTRDIYETDYYRKGGKGLLPV  199 (308)
T ss_dssp             CCCGGGGGGCEEGGGSSEECG
T ss_pred             cceeccCCcceeeccceeccc
Confidence            999876544322 22334554

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.6e-27  Score=196.28  Aligned_cols=141  Identities=25%  Similarity=0.287  Sum_probs=111.6

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc--------hhHHHHHHHH--HHHHhcCCCccceEEEEEEeCC----eeEEEEec
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK--------EGEREFQAEV--EIISRVHHKHLVSLVGYYTAGS----QRMLVYEF  164 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~--------~~~~~~~~E~--~~l~~l~hp~iv~~~~~~~~~~----~~~lv~e~  164 (243)
                      .+|...+.||+|+||.||+|++.+..        ...+.+.+|.  ..+++++|||||++++++.+.+    .+||||||
T Consensus         3 ~~~~l~~~iG~G~fg~Vy~~~~~g~~vAvK~~~~~~~~~~~~e~ei~~~~~~~HpnIv~~~~~~~~~~~~~~~~~lv~Ey   82 (303)
T d1vjya_           3 RTIVLQESIGKGRFGEVWRGKWRGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDY   82 (303)
T ss_dssp             GGEEEEEEEECCSSSEEEEEEETTEEEEEEEECGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEEC
T ss_pred             cEEEEEEEEeeCCCeEEEEEEECCEEEEEEEECccchhHHHHHHHHHHHhhCCCCcCcceEEEEEeCCCcceEEEEEEec
Confidence            46778899999999999999865432        1233444444  4556789999999999998654    58999999


Q ss_pred             cCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc----------------CCCcEEECCCCcEEEeccCCceecC
Q 039406          165 VLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD----------------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       165 ~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~----------------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      |++|+|.+++++.   .++|..++.++.+++.||.|||.                |++||||+.++.+||+|||+++.+.
T Consensus        83 ~~~g~L~~~l~~~---~l~~~~~~~~~~~ia~gl~~lH~~~~~~~~~~~IvHrDlKp~NILl~~~~~~Kl~DFGl~~~~~  159 (303)
T d1vjya_          83 HEHGSLFDYLNRY---TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHD  159 (303)
T ss_dssp             CTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCCTTCEEEE
T ss_pred             ccCCCHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCeeccccCccceEEcCCCCeEEEecCcccccc
Confidence            9999999999764   38999999999999999999973                4589999999999999999999886


Q ss_pred             CCCcee---eecccccc
Q 039406          229 DVNTHV---STRVMGTF  242 (243)
Q Consensus       229 ~~~~~~---~~~~~GT~  242 (243)
                      ......   ....+||+
T Consensus       160 ~~~~~~~~~~~~~~gt~  176 (303)
T d1vjya_         160 SATDTIDIAPNHRVGTK  176 (303)
T ss_dssp             TTTTEECC----CCSCG
T ss_pred             CCCcceeccccceeccc
Confidence            544322   22456775

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.9e-27  Score=196.66  Aligned_cols=144  Identities=24%  Similarity=0.331  Sum_probs=120.4

Q ss_pred             CCCCccceeeecCceEEEEEEecCC-------------------chhHHHHHHHHHHHHhc-CCCccceEEEEEEeCCee
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNG-------------------KEGEREFQAEVEIISRV-HHKHLVSLVGYYTAGSQR  158 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~-------------------~~~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~~  158 (243)
                      ++|++.++||+|+||.||+|++...                   ......+.+|+.+++++ +|||||++++++.+.+..
T Consensus        23 ~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~~~~~l~~HpnIv~~~g~~~~~~~~  102 (311)
T d1t46a_          23 NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPT  102 (311)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred             HHeEEeeEEeecCCeEEEEEEEeccccCCCCeEEEEEEECcccCHHHHHHHHHHHHHHHhccCCCCEEEEEEEEeeCCEE
Confidence            6888999999999999999975321                   12456789999999999 699999999999999999


Q ss_pred             EEEEeccCCCCHHHHhccCC----------------CCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCC
Q 039406          159 MLVYEFVLNNTLVFHLHGKG----------------QPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKF  214 (243)
Q Consensus       159 ~lv~e~~~~g~L~~~l~~~~----------------~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~  214 (243)
                      |||||||++|+|.+++....                ...+++..++.++.||+.||.|||.        |++|||++.++
T Consensus       103 ~lvmE~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~~LH~~~ivHrDLKp~NIl~~~~~  182 (311)
T d1t46a_         103 LVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGR  182 (311)
T ss_dssp             EEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEETTT
T ss_pred             EEEEEcCCCCCHHHHHHhccccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhCCeeecccccccccccccC
Confidence            99999999999999987543                1248899999999999999999976        56899999999


Q ss_pred             cEEEeccCCceecCCCCce-eeecccccc
Q 039406          215 EAKVADFGLAKIASDVNTH-VSTRVMGTF  242 (243)
Q Consensus       215 ~~kl~DFG~a~~~~~~~~~-~~~~~~GT~  242 (243)
                      .+||+|||+++.+.+.... ..+..+||+
T Consensus       183 ~~ki~DfG~~~~~~~~~~~~~~~~~~gt~  211 (311)
T d1t46a_         183 ITKICDFGLARDIKNDSNYVVKGNARLPV  211 (311)
T ss_dssp             EEEECCCGGGSCTTSCTTSEECSSSEECG
T ss_pred             cccccccchheeccCCCcceEeeecccCh
Confidence            9999999999988655432 233456665

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.1e-27  Score=195.45  Aligned_cols=144  Identities=21%  Similarity=0.287  Sum_probs=114.7

Q ss_pred             CCCCccceeeecCceEEEEEEecCC---------------------chhHHHHHHHHHHHHhc-CCCccceEEEEEEeCC
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNG---------------------KEGEREFQAEVEIISRV-HHKHLVSLVGYYTAGS  156 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~---------------------~~~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~  156 (243)
                      ++|++.+.||+|+||.||+|+....                     ......+.+|...+.++ +|||||+++++|.+++
T Consensus        13 ~~~~l~~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~e~~~l~~~~~HpnIv~~~~~~~~~~   92 (299)
T d1fgka_          13 DRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDG   92 (299)
T ss_dssp             GGEEEEEECC-----CEEEEEEECC----CCCEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred             HHeEEeeEEeecCCcEEEEEEEcCCCcccccCceEEEEEEECcccChHHHHHHHHHHHHHHHhcCCCeEEecccccccCC
Confidence            6889999999999999999975332                     12456788899999888 8999999999999999


Q ss_pred             eeEEEEeccCCCCHHHHhccCC--------------CCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCC
Q 039406          157 QRMLVYEFVLNNTLVFHLHGKG--------------QPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKF  214 (243)
Q Consensus       157 ~~~lv~e~~~~g~L~~~l~~~~--------------~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~  214 (243)
                      .+|+|||||++|+|.+++..+.              ...+++..++.++.|++.||.|||.        |++|||++.++
T Consensus        93 ~~~~v~e~~~~g~l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~ylH~~~ivHrDiKp~NiLl~~~~  172 (299)
T d1fgka_          93 PLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDN  172 (299)
T ss_dssp             SCEEEECCCTTCBHHHHHHTTSCC------------CCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTC
T ss_pred             eEEEEEEccCCCcHHHHHHhhcCCccccccccccCccccCCHHHHHHHHHHHHHHHHHhhhCCEEeeeecccceeecCCC
Confidence            9999999999999999997553              1348999999999999999999976        56899999999


Q ss_pred             cEEEeccCCceecCCCCcee-eecccccc
Q 039406          215 EAKVADFGLAKIASDVNTHV-STRVMGTF  242 (243)
Q Consensus       215 ~~kl~DFG~a~~~~~~~~~~-~~~~~GT~  242 (243)
                      .+||+|||+++......... ....+||+
T Consensus       173 ~~kl~dfg~~~~~~~~~~~~~~~~~~~~~  201 (299)
T d1fgka_         173 VMKIADFGLARDIHHIDYYKKTTNGRLPV  201 (299)
T ss_dssp             CEEECSTTCCCCGGGCCTTCCCTTSCCGG
T ss_pred             CeEeccchhhccccccccccccccCCCCh
Confidence            99999999999876543322 22345554

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.8e-27  Score=198.78  Aligned_cols=142  Identities=21%  Similarity=0.264  Sum_probs=119.7

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc--------------------hhHHHHHHHHHHHHhcCC-CccceEEEEEEeCCe
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK--------------------EGEREFQAEVEIISRVHH-KHLVSLVGYYTAGSQ  157 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~--------------------~~~~~~~~E~~~l~~l~h-p~iv~~~~~~~~~~~  157 (243)
                      ++|.+.+.||+|+||.||+|+....+                    ...+.+.+|+++|++++| +||+++++++.+.+.
T Consensus        24 ~~y~~~~~IG~G~fg~Vy~~~~~~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~h~pnIv~~~~~~~~~~~  103 (322)
T d1vzoa_          24 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETK  103 (322)
T ss_dssp             GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETTE
T ss_pred             hceEEEEEEecCCCeEEEEEEECccCCCCcEEEEEEEehHHhccchHHHHHHHHHHHHHHhccCCCeEEEeeeeeccCCc
Confidence            77999999999999999999763321                    134567899999999976 899999999999999


Q ss_pred             eEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          158 RMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       158 ~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      +++|||||.+|+|.+++...+  .+.+..++.++.|++.||.|||.        ||+|||++.++.+||+|||+|+.+..
T Consensus       104 ~~~v~e~~~~~~L~~~i~~~~--~~~e~~~~~~~~Qi~~al~~lH~~~ivHrDiKp~Nill~~~~~vkL~DFG~a~~~~~  181 (322)
T d1vzoa_         104 LHLILDYINGGELFTHLSQRE--RFTEHEVQIYVGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVA  181 (322)
T ss_dssp             EEEEECCCCSCBHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEESCSSEEEECCG
T ss_pred             eeeeeecccccHHHHHHHhcc--cccHHHHHHHHHHHHHHHHHhhcCCEEeccCCccceeecCCCCEEEeeccchhhhcc
Confidence            999999999999999987655  37888999999999999999976        56899999999999999999998765


Q ss_pred             CCceeeecccccc
Q 039406          230 VNTHVSTRVMGTF  242 (243)
Q Consensus       230 ~~~~~~~~~~GT~  242 (243)
                      ..........||+
T Consensus       182 ~~~~~~~~~~g~~  194 (322)
T d1vzoa_         182 DETERAYDFCGTI  194 (322)
T ss_dssp             GGGGGGCGGGSCC
T ss_pred             ccccccccccccc
Confidence            5443333445554

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.1e-26  Score=188.35  Aligned_cols=131  Identities=20%  Similarity=0.280  Sum_probs=116.8

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc---------------hhHHHHHHHHHHHHhcCCCccceEEEEEEeCCeeEEEEe
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK---------------EGEREFQAEVEIISRVHHKHLVSLVGYYTAGSQRMLVYE  163 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~---------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e  163 (243)
                      ++|++++.||+|+||+||+|++..+.               .....+.+|+.+|+.++|+||+++++++.+.+..++|||
T Consensus         2 ~ry~~i~~LG~G~fg~V~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~~~~iv~~   81 (292)
T d1unla_           2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFE   81 (292)
T ss_dssp             CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             CCCEeeeEEecCcCeEEEEEEECCCCcEEEEEEEehhhCChHHHHHHHHHHHHHHhcCcCCEEeeccccccccceeEEee
Confidence            68999999999999999999876543               246788999999999999999999999999999999999


Q ss_pred             ccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCCC
Q 039406          164 FVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDVN  231 (243)
Q Consensus       164 ~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~~  231 (243)
                      ++.+++|..++...+  .+.+..++.++.|++.||+|||.        ||+|||++.++.+||+|||+|+......
T Consensus        82 ~~~~~~l~~~~~~~~--~~~~~~~~~~~~q~~~aL~~lH~~~IvHrDiKP~NIli~~~~~~kl~DFG~a~~~~~~~  155 (292)
T d1unla_          82 FCDQDLKKYFDSCNG--DLDPEIVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLINRNGELKLANFGLARAFGIPV  155 (292)
T ss_dssp             CCSEEHHHHHHHTTT--CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSCC
T ss_pred             ecccccccccccccc--ccchhHHHHHHHHHHHHHHHhhcCCEeeecccCcccccccCCceeeeecchhhcccCCC
Confidence            999999988876554  48899999999999999999976        5699999999999999999999876543

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=99.93  E-value=1.8e-26  Score=193.04  Aligned_cols=128  Identities=18%  Similarity=0.281  Sum_probs=110.0

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch----------hHHHHHHHHHHHHhcC-CCccceEEEEEEe--CCeeEEEEecc
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE----------GEREFQAEVEIISRVH-HKHLVSLVGYYTA--GSQRMLVYEFV  165 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~----------~~~~~~~E~~~l~~l~-hp~iv~~~~~~~~--~~~~~lv~e~~  165 (243)
                      ++|++++.||+|+||+||+|+...+.+          ..+.+.+|+.+|++++ |+||++++++|..  ...+++|||||
T Consensus        35 d~y~i~~~LG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~Ei~il~~l~~hpnIv~~~~~~~~~~~~~~~~v~e~~  114 (328)
T d3bqca1          35 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHV  114 (328)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSSCHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCSEEEEEECC
T ss_pred             cCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEECHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEecCCCceeEEEeec
Confidence            679999999999999999998765432          4577899999999995 9999999999984  45699999999


Q ss_pred             CCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCC-cEEEeccCCceecCCCC
Q 039406          166 LNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKF-EAKVADFGLAKIASDVN  231 (243)
Q Consensus       166 ~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~-~~kl~DFG~a~~~~~~~  231 (243)
                      .+++|..+..     .+++..++.++.||+.||.|||.        ||+||||+.++ .+||+|||+|+.+....
T Consensus       115 ~~~~L~~~~~-----~l~e~~i~~i~~qil~aL~~LH~~gIvHrDiKp~NILi~~~~~~vkl~DFG~a~~~~~~~  184 (328)
T d3bqca1         115 NNTDFKQLYQ-----TLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQ  184 (328)
T ss_dssp             CSCBGGGTTT-----SCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTTEEEECCGGGCEECCTTC
T ss_pred             CCCcHHHHhc-----CCCHHHHHHHHHHHHHHHHHHhhcccccccccccceEEcCCCCeeeecccccceeccCCC
Confidence            9999977642     48999999999999999999976        56999998654 69999999999876543

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1e-26  Score=196.25  Aligned_cols=132  Identities=23%  Similarity=0.319  Sum_probs=105.8

Q ss_pred             CCCccceeeecCceEEEEEEecCCch---------hHHHHHHHHHHHHhcCCCccceEEEEEEeC------CeeEEEEec
Q 039406          100 GFSDANLLRQDGFGYVHRGVLPNGKE---------GEREFQAEVEIISRVHHKHLVSLVGYYTAG------SQRMLVYEF  164 (243)
Q Consensus       100 ~~~~~~~lg~G~~g~V~~~~~~~~~~---------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~------~~~~lv~e~  164 (243)
                      +|...++||+|+||+||+|++..+.+         ....+.+|+.+|++++|+|||+++++|...      .++||||||
T Consensus        21 ~Y~~~k~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~Ei~il~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~Ey  100 (350)
T d1q5ka_          21 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDY  100 (350)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSSSCCHHHHHHHHCCCTTBCCEEEEEEEC--CCSCCEEEEEEEC
T ss_pred             CcEeeeEEeeCcCeEEEEEEECCCCCEEEEEEECccchHHHHHHHHHHhcCCCCCCcEEEEEEecCccCCceEEEEEEec
Confidence            58889999999999999999876532         122346899999999999999999998643      358999999


Q ss_pred             cCCCCHHHHhcc-CCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCC-cEEEeccCCceecCCCC
Q 039406          165 VLNNTLVFHLHG-KGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKF-EAKVADFGLAKIASDVN  231 (243)
Q Consensus       165 ~~~g~L~~~l~~-~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~-~~kl~DFG~a~~~~~~~  231 (243)
                      |.++.+..+... .....+++..++.++.||+.||+|||.        ||+|||++.++ .+||+|||+|+.+....
T Consensus       101 ~~~~~~~~l~~~~~~~~~l~~~~~~~i~~qil~aL~yLH~~~IiHrDiKp~NILl~~~~~~~kl~DFG~a~~~~~~~  177 (350)
T d1q5ka_         101 VPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGE  177 (350)
T ss_dssp             CSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECTTTCCEEECCCTTCEECCTTS
T ss_pred             cCCccHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHhcCCcccCCCcceEEEecCCCceeEecccchhhccCCc
Confidence            987644433321 223359999999999999999999987        56999999775 89999999999876543

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.6e-26  Score=193.47  Aligned_cols=129  Identities=20%  Similarity=0.324  Sum_probs=106.0

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCch--------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCC-----ee
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGKE--------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGS-----QR  158 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~--------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-----~~  158 (243)
                      +++|.+++.||+|+||.||+|++..+.+              ..+.+.+|+.+|++++|+||+++++++....     .+
T Consensus         7 ~~rY~~~~~LG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~hp~iv~~~~~~~~~~~~~~~~~   86 (345)
T d1pmea_           7 GPRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDV   86 (345)
T ss_dssp             CTTEEEEEECC---CCCEEEEEETTTCSEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCE
T ss_pred             CCCeEEEEEEeeccCeEEEEEEECCCCcEEEEEEEehhcChHHHHHHHHHHHHHHHcCCCCCCcEEEEEeeccccccceE
Confidence            3679999999999999999998654422              3567889999999999999999999987643     34


Q ss_pred             EEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCCC
Q 039406          159 MLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASDV  230 (243)
Q Consensus       159 ~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~~  230 (243)
                      ||+ +|+.+|+|.+++...   .+++..++.++.|++.||.|||+        ||+||||+.++.+||+|||+|+.....
T Consensus        87 ~l~-~~~~~g~L~~~l~~~---~l~~~~i~~i~~qil~al~yLH~~~iiHRDIKp~NILl~~~~~~kl~DfG~a~~~~~~  162 (345)
T d1pmea_          87 YLV-THLMGADLYKLLKTQ---HLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPD  162 (345)
T ss_dssp             EEE-EECCCEEHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECCGG
T ss_pred             EEE-EeecCCchhhhhhcC---CCCHHHHHHHHHHHHHHHHHHHHCCCcCCCCCcceEEECCCCCEEEcccCceeeccCC
Confidence            555 556689999999754   49999999999999999999976        569999999999999999999987543

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=4e-26  Score=192.28  Aligned_cols=129  Identities=20%  Similarity=0.303  Sum_probs=106.1

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCch---------------hHHHHHHHHHHHHhcCCCccceEEEEEEeCC------
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGKE---------------GEREFQAEVEIISRVHHKHLVSLVGYYTAGS------  156 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~---------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~------  156 (243)
                      .++|.+++.||+|+||.||+|+++.+.+               ..+.+.+|+++|++++|||||+++++|...+      
T Consensus        17 ~~~Y~~i~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~hpniv~l~~~~~~~~~~~~~~   96 (346)
T d1cm8a_          17 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFT   96 (346)
T ss_dssp             BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCC
T ss_pred             CCcEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEchhhcChHHHHHHHHHHHHHHhcCCCCeeEEEEEeccCccccccc
Confidence            4789999999999999999998765422               3567889999999999999999999998654      


Q ss_pred             eeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecC
Q 039406          157 QRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIAS  228 (243)
Q Consensus       157 ~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~  228 (243)
                      .+||||||| +.+|..++...   .+++..++.++.|++.||.|||.        ||+|||++.++.+||+|||+|+...
T Consensus        97 ~~~lv~e~~-~~~l~~~~~~~---~l~~~~~~~~~~qi~~aL~~LH~~~IiHrDiKp~NIL~~~~~~~kl~Dfg~a~~~~  172 (346)
T d1cm8a_          97 DFYLVMPFM-GTDLGKLMKHE---KLGEDRIQFLVYQMLKGLRYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLARQAD  172 (346)
T ss_dssp             CCEEEEECC-SEEHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECC
T ss_pred             eEEEEEecc-cccHHHHHHhc---cccHHHHHHHHHHHHHHHHHHHhCCCcccccCcchhhcccccccccccccceeccC
Confidence            579999999 66888877543   49999999999999999999976        5699999999999999999999876


Q ss_pred             CC
Q 039406          229 DV  230 (243)
Q Consensus       229 ~~  230 (243)
                      ..
T Consensus       173 ~~  174 (346)
T d1cm8a_         173 SE  174 (346)
T ss_dssp             SS
T ss_pred             Cc
Confidence            54

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2e-25  Score=185.82  Aligned_cols=130  Identities=21%  Similarity=0.253  Sum_probs=108.7

Q ss_pred             CCCCccceeeecCceEEEEEEecCCch---------------hHHHHHHHHHHHHhcCCCccceEEEEEEe--------C
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGKE---------------GEREFQAEVEIISRVHHKHLVSLVGYYTA--------G  155 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~~---------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~--------~  155 (243)
                      ++|.+++.||+|+||+||+|++..+++               ..+.+.+|+.+|++++|+||+++++++..        .
T Consensus        10 ~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~nii~~~~~~~~~~~~~~~~~   89 (318)
T d3blha1          10 SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRCK   89 (318)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC----CTTSSCHHHHHHHHHHHHCCCTTBCCEEEEEEC---------
T ss_pred             CCEEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHHhcCCCccceEeeeecccccccccC
Confidence            789999999999999999998764422               34668899999999999999999998854        4


Q ss_pred             CeeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceec
Q 039406          156 SQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIA  227 (243)
Q Consensus       156 ~~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~  227 (243)
                      +.+|+|||||.++.+..+.....  .+.+..++.++.|++.||.|||.        ||+|||++.++.+||+|||+|+.+
T Consensus        90 ~~~~iv~e~~~~~~~~~~~~~~~--~~~~~~~~~i~~qil~~l~~lH~~~ivHrDlKp~NILl~~~~~~kl~dfg~~~~~  167 (318)
T d3blha1          90 GSIYLVFDFCEHDLAGLLSNVLV--KFTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAF  167 (318)
T ss_dssp             -CEEEEEECCCEEHHHHHTCTTC--CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCCTTCEEC
T ss_pred             ceEEEEEeccCCCccchhhhccc--ccccHHHHHHHHHHHHHHHHhccCCEEecCcCchheeecCCCcEEeeecceeeec
Confidence            56899999998876665543332  58999999999999999999976        569999999999999999999887


Q ss_pred             CCC
Q 039406          228 SDV  230 (243)
Q Consensus       228 ~~~  230 (243)
                      ...
T Consensus       168 ~~~  170 (318)
T d3blha1         168 SLA  170 (318)
T ss_dssp             CC-
T ss_pred             ccc
Confidence            643

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2e-25  Score=184.76  Aligned_cols=142  Identities=23%  Similarity=0.278  Sum_probs=112.1

Q ss_pred             hCCCCccceeeecCceEEEEEEecCC-ch---------------hHHHHHHHHHHHHhc---CCCccceEEEEEEe----
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNG-KE---------------GEREFQAEVEIISRV---HHKHLVSLVGYYTA----  154 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~-~~---------------~~~~~~~E~~~l~~l---~hp~iv~~~~~~~~----  154 (243)
                      .++|++++.||+|+||.||+|++..+ .+               ....+.+|+.+|+.|   +||||++++++|..    
T Consensus         6 ~~~Y~i~~~LG~G~fg~V~~a~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~~l~~l~~~~HpnIv~~~~~~~~~~~~   85 (305)
T d1blxa_           6 DQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTD   85 (305)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEECS
T ss_pred             cCCEEEEEEEecccCeEEEEEEEECCCCEEEEEEEEehhhccchHHHHHHHHHHHHHHHhhcCCCCcceeeeeecccccc
Confidence            37899999999999999999987533 21               123466788877765   79999999999863    


Q ss_pred             -CCeeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCce
Q 039406          155 -GSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAK  225 (243)
Q Consensus       155 -~~~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~  225 (243)
                       ...+|++||||.++.+....... ...+++..++.++.|++.||.|||.        ||+|||++.++.+||+|||+++
T Consensus        86 ~~~~~~~~~e~~~~~~~~~~~~~~-~~~~~~~~~~~~~~qi~~aL~yLH~~~ivHrDiKp~NILi~~~~~~kl~dfg~~~  164 (305)
T d1blxa_          86 RETKLTLVFEHVDQDLTTYLDKVP-EPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLAR  164 (305)
T ss_dssp             SEEEEEEEEECCSCBHHHHHHHSC-TTCSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECSCCSCC
T ss_pred             cCceEEEEEEeccCCchhhhhhcc-CCCCCHHHHHHHHHHHHHHHHHHHhCCEEecCCCccEEEEcCCCCeeecchhhhh
Confidence             34689999999887776554433 3358999999999999999999976        5699999999999999999998


Q ss_pred             ecCCCCceeeecccccc
Q 039406          226 IASDVNTHVSTRVMGTF  242 (243)
Q Consensus       226 ~~~~~~~~~~~~~~GT~  242 (243)
                      .......  ....+||+
T Consensus       165 ~~~~~~~--~~~~~gT~  179 (305)
T d1blxa_         165 IYSFQMA--LTSVVVTL  179 (305)
T ss_dssp             CCCGGGG--GCCCCCCC
T ss_pred             hhccccc--CCCcccCh
Confidence            7654332  23456775

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.91  E-value=1.4e-24  Score=178.83  Aligned_cols=143  Identities=17%  Similarity=0.184  Sum_probs=117.7

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCch-----------hHHHHHHHHHHHHhcCC-CccceEEEEEEeCCeeEEEEecc
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGKE-----------GEREFQAEVEIISRVHH-KHLVSLVGYYTAGSQRMLVYEFV  165 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~-----------~~~~~~~E~~~l~~l~h-p~iv~~~~~~~~~~~~~lv~e~~  165 (243)
                      .++|.+.+.||+|+||.||+|++..+.+           ....+.+|+++++.|+| +||+.+++++..+...|+|||||
T Consensus         4 g~~Y~i~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~~vme~~   83 (293)
T d1csna_           4 GVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSDAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVIDLL   83 (293)
T ss_dssp             TTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCTTSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEECC
T ss_pred             CCceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEccccCcHHHHHHHHHHHHhcCCCCCCEEEEEeecCCccEEEEEec
Confidence            3679999999999999999998765432           23457889999999965 89999999999999999999999


Q ss_pred             CCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECC-----CCcEEEeccCCceecCCCCc
Q 039406          166 LNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDF-----KFEAKVADFGLAKIASDVNT  232 (243)
Q Consensus       166 ~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~-----~~~~kl~DFG~a~~~~~~~~  232 (243)
                       +++|.+++...+. .+++..++.++.|++.||.|||+        ||+|||++.     ++.+||+|||+|+.+.+...
T Consensus        84 -~~~l~~~~~~~~~-~~~~~~~~~i~~q~~~~l~~lH~~giiHrDiKp~Nili~~~~~~~~~~vkl~DFG~a~~~~~~~~  161 (293)
T d1csna_          84 -GPSLEDLLDLCGR-KFSVKTVAMAAKQMLARVQSIHEKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVT  161 (293)
T ss_dssp             -CCBHHHHHHHTTT-CCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCTTT
T ss_pred             -CCCHHHHHHhhcc-chhhHHHHHHHHHHHHHHHHHHHCCceeccCCccceeecCcccccCCceEEcccceeEEcccCcc
Confidence             6799998876554 58999999999999999999977        579999974     57899999999998754322


Q ss_pred             e------eeecccccc
Q 039406          233 H------VSTRVMGTF  242 (243)
Q Consensus       233 ~------~~~~~~GT~  242 (243)
                      .      ....++||+
T Consensus       162 ~~~~~~~~~~~~~GT~  177 (293)
T d1csna_         162 KQHIPYREKKNLSGTA  177 (293)
T ss_dssp             CCBCCCCCCCCCCSCT
T ss_pred             ccceeecccCceEEch
Confidence            1      223457886

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=7.1e-25  Score=184.59  Aligned_cols=129  Identities=16%  Similarity=0.296  Sum_probs=106.0

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCch---------------hHHHHHHHHHHHHhcCCCccceEEEEEEeC-----Ce
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGKE---------------GEREFQAEVEIISRVHHKHLVSLVGYYTAG-----SQ  157 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~---------------~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~-----~~  157 (243)
                      .++|++.+.||+|+||+||+|++..+.+               ..+.+.+|+.+|++++|+|||++++++...     ..
T Consensus        17 ~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~h~~iv~~~~~~~~~~~~~~~~   96 (348)
T d2gfsa1          17 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFN   96 (348)
T ss_dssp             ETTEEEEEECGGGTTSSEEEEEETTTTEEEEEEECSCTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSTTTCC
T ss_pred             CCCeEEEEEEecCCCeEEEEEEECCCCCEEEEEEECchhcChHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeccccccCc
Confidence            4789999999999999999998665422               345788999999999999999999998643     33


Q ss_pred             eEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          158 RMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       158 ~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      .+++|+|+.+|+|.+++..+   .+++..++.++.||+.||.|||.        ||+|||++.++.+||+|||+|.....
T Consensus        97 ~~~i~~~~~gg~L~~~~~~~---~l~e~~~~~i~~qil~aL~~LH~~giiHrDiKp~NILi~~~~~~kl~dfg~a~~~~~  173 (348)
T d2gfsa1          97 DVYLVTHLMGADLNNIVKCQ---KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDD  173 (348)
T ss_dssp             CCEEEEECCSEEHHHHHTTC---CCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCC----CCTG
T ss_pred             eEEEEEeecCCchhhhcccc---cccHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccccccccccccccchhcccCc
Confidence            45667777899999998643   49999999999999999999986        56999999999999999999987644

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.7e-24  Score=182.90  Aligned_cols=137  Identities=21%  Similarity=0.233  Sum_probs=102.5

Q ss_pred             CCCCccceeeecCceEEEEEEecCCc---------------hhHHHHHHHHHHHHhcCCCccceEEEEEEe------CCe
Q 039406           99 DGFSDANLLRQDGFGYVHRGVLPNGK---------------EGEREFQAEVEIISRVHHKHLVSLVGYYTA------GSQ  157 (243)
Q Consensus        99 ~~~~~~~~lg~G~~g~V~~~~~~~~~---------------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~------~~~  157 (243)
                      ++|++++.||+|+||+||+|++..++               ...+++.+|+.+|++++|||||+++++|..      .+.
T Consensus        17 ~~Y~i~~~LG~G~fg~V~~~~d~~t~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~f~~~~~~~~~~~   96 (355)
T d2b1pa1          17 KRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQD   96 (355)
T ss_dssp             TTEEEEEECSCC--CEEEEEEETTTTEEEEEEEEESTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCCE
T ss_pred             CCeEEEEEeecCcCeEEEEEEECCCCCEEEEEEEChhhcCHHHHHHHHHHHHHHHhcCCCCeeEEEEEEecccccccCce
Confidence            67999999999999999999876542               244678899999999999999999999963      468


Q ss_pred             eEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCCceecCC
Q 039406          158 RMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGLAKIASD  229 (243)
Q Consensus       158 ~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~a~~~~~  229 (243)
                      +|+|||||.++ +.+.+..    .+++..++.++.|++.||.|||.        ||+|||++.++.+||+|||+++....
T Consensus        97 ~~iv~Ey~~~~-l~~~~~~----~~~~~~i~~~~~qil~gl~~LH~~giiHrDlKP~Nil~~~~~~~kl~df~~~~~~~~  171 (355)
T d2b1pa1          97 VYLVMELMDAN-LCQVIQM----ELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGT  171 (355)
T ss_dssp             EEEEEECCSEE-HHHHHTS----CCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCCCC------
T ss_pred             eEEEEeccchH-HHHhhhc----CCCHHHHHHHHHHHHHHHHHhhhcccccccCCccccccccccceeeechhhhhcccc
Confidence            99999999765 4444432    48999999999999999999976        56999999999999999999987754


Q ss_pred             CCceeeecccccc
Q 039406          230 VNTHVSTRVMGTF  242 (243)
Q Consensus       230 ~~~~~~~~~~GT~  242 (243)
                      ...  .+..+||+
T Consensus       172 ~~~--~~~~~~t~  182 (355)
T d2b1pa1         172 SFM--MTPYVVTR  182 (355)
T ss_dssp             -----------CC
T ss_pred             ccc--cccccccc
Confidence            332  22345553

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=1e-23  Score=173.91  Aligned_cols=143  Identities=19%  Similarity=0.216  Sum_probs=111.2

Q ss_pred             hCCCCccceeeecCceEEEEEEecCCch-----------hHHHHHHHHHHHHhcCCCcc-ceEEEEEEeCCeeEEEEecc
Q 039406           98 TDGFSDANLLRQDGFGYVHRGVLPNGKE-----------GEREFQAEVEIISRVHHKHL-VSLVGYYTAGSQRMLVYEFV  165 (243)
Q Consensus        98 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~-----------~~~~~~~E~~~l~~l~hp~i-v~~~~~~~~~~~~~lv~e~~  165 (243)
                      .++|++.+.||+|+||.||+|++..+.+           ....+.+|+++|+.++|+|+ +.++.++.+.+..++|||||
T Consensus         6 g~rY~l~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~E~~i~~~l~~~~~i~~~~~~~~~~~~~~ivme~~   85 (299)
T d1ckia_           6 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMELL   85 (299)
T ss_dssp             TTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEESCTTSCCHHHHHHHHHHSTTSTTCCCEEEEEEETTEEEEEEECC
T ss_pred             CCEEEEeEEEeeCCCcEEEEEEECCCCCEEEEEEEchhccCHHHHHHHHHHHHccCCCcccEEEEEEecCCEEEEEEEEc
Confidence            3679999999999999999998765432           23467889999999987765 55566677888999999999


Q ss_pred             CCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECC---CCcEEEeccCCceecCCCCce-
Q 039406          166 LNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDF---KFEAKVADFGLAKIASDVNTH-  233 (243)
Q Consensus       166 ~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~---~~~~kl~DFG~a~~~~~~~~~-  233 (243)
                       +++|.+.+..... .+++..++.++.|++.||.|||.        ||+|||++.   +..+||+|||+|+.+.+.... 
T Consensus        86 -~~~l~~~~~~~~~-~~~~~~~~~~~~qi~~~l~~lH~~~iiHrDiKp~NIl~~~~~~~~~vkl~DFG~a~~~~~~~~~~  163 (299)
T d1ckia_          86 -GPSLEDLFNFCSR-KFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQ  163 (299)
T ss_dssp             -CCBHHHHHHHTTT-CCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECCGGGTTCEEECCCSSCEECBCTTTCC
T ss_pred             -CCchhhhhhhccC-CCcHHHHHHHHHHHHHHHHHHHHCCeeeccCCHhhccccccCCCceeeeeccCcceecccccccc
Confidence             5577666654433 59999999999999999999976        569999864   457999999999988654321 


Q ss_pred             -----eeecccccc
Q 039406          234 -----VSTRVMGTF  242 (243)
Q Consensus       234 -----~~~~~~GT~  242 (243)
                           ....++||+
T Consensus       164 ~~~~~~~~~~~gt~  177 (299)
T d1ckia_         164 HIPYRENKNLTGTA  177 (299)
T ss_dssp             BCCCCBCCSCCCCS
T ss_pred             ceeccccCCcCCCc
Confidence                 223456775

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.76  E-value=1e-18  Score=134.53  Aligned_cols=116  Identities=10%  Similarity=0.045  Sum_probs=88.7

Q ss_pred             CccceeeecCceEEEEEEecCCch------------------------------hHHHHHHHHHHHHhcCCCccceEEEE
Q 039406          102 SDANLLRQDGFGYVHRGVLPNGKE------------------------------GEREFQAEVEIISRVHHKHLVSLVGY  151 (243)
Q Consensus       102 ~~~~~lg~G~~g~V~~~~~~~~~~------------------------------~~~~~~~E~~~l~~l~hp~iv~~~~~  151 (243)
                      .+.+.||+|+||.||+|+..+++.                              ......+|...|.++.|.+++..+++
T Consensus         3 ~vg~~IG~G~~g~Vy~a~~~~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~v~~~~~~   82 (191)
T d1zara2           3 AIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAVPKVYAW   82 (191)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSSSCCEEEE
T ss_pred             hhCCEeeeCcceEEEEEECCCCCEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHccCCCcceEEEe
Confidence            357899999999999998654421                              12334568889999999999998866


Q ss_pred             EEeCCeeEEEEeccCCCCHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc--------CCCcEEECCCCcEEEeccCC
Q 039406          152 YTAGSQRMLVYEFVLNNTLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD--------DLANILLDFKFEAKVADFGL  223 (243)
Q Consensus       152 ~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~--------~~~NiLl~~~~~~kl~DFG~  223 (243)
                      ..    .+++|||+++..+.+         +.+.....++.|++.+|.|||+        ||+|||++++ .++|+|||+
T Consensus        83 ~~----~~lvme~~~~~~~~~---------l~~~~~~~i~~ql~~~l~~lH~~giiHrDiKP~NILv~~~-~~~liDFG~  148 (191)
T d1zara2          83 EG----NAVLMELIDAKELYR---------VRVENPDEVLDMILEEVAKFYHRGIVHGDLSQYNVLVSEE-GIWIIDFPQ  148 (191)
T ss_dssp             ET----TEEEEECCCCEEGGG---------CCCSCHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEEETT-EEEECCCTT
T ss_pred             cC----CEEEEEeeccccccc---------hhhHHHHHHHHHHHHHHHHHhhCCEEEccCChhheeeeCC-CEEEEECCC
Confidence            32    379999998865543         2233456788999999999976        6799999865 589999999


Q ss_pred             ceecCCCC
Q 039406          224 AKIASDVN  231 (243)
Q Consensus       224 a~~~~~~~  231 (243)
                      |+....+.
T Consensus       149 a~~~~~~~  156 (191)
T d1zara2         149 SVEVGEEG  156 (191)
T ss_dssp             CEETTSTT
T ss_pred             cccCCCCC
Confidence            98876443

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.74  E-value=2.4e-18  Score=144.81  Aligned_cols=131  Identities=18%  Similarity=0.197  Sum_probs=100.9

Q ss_pred             CCCccceeeecCceEEEEEEecCCch------------hHHHHHHHHHHHHhcC-----------CCccceEEEEEEe--
Q 039406          100 GFSDANLLRQDGFGYVHRGVLPNGKE------------GEREFQAEVEIISRVH-----------HKHLVSLVGYYTA--  154 (243)
Q Consensus       100 ~~~~~~~lg~G~~g~V~~~~~~~~~~------------~~~~~~~E~~~l~~l~-----------hp~iv~~~~~~~~--  154 (243)
                      +|+++++||+|+||+||+|+...+.+            ..+.+.+|+.+|+.++           |+||+++++++..  
T Consensus        14 rY~i~~~LG~G~fg~Vy~~~~~~~g~~vAvKvi~~~~~~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~iv~~~~~~~~~~   93 (362)
T d1q8ya_          14 RYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKG   93 (362)
T ss_dssp             TEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEEEE
T ss_pred             cEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeccccchHHHHHHHHHHHHhcchhhhhhhhcCcCceEEEEEEeeecc
Confidence            59999999999999999998765432            3466788999988875           5789999988764  


Q ss_pred             CCeeEEEEeccCCC-CHHHHhccCCCCCCCHHHHHHHHHHHHHhhhHhhc---------CCCcEEECCCC------cEEE
Q 039406          155 GSQRMLVYEFVLNN-TLVFHLHGKGQPTMDWPTRIKIALGSAKGLAYLHD---------DLANILLDFKF------EAKV  218 (243)
Q Consensus       155 ~~~~~lv~e~~~~g-~L~~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~---------~~~NiLl~~~~------~~kl  218 (243)
                      ....+++|+++..+ .............+.+..++.++.|++.||.|||.         ||+||||+.++      .+||
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~qil~al~~lh~~~~IvHrDlKp~NIll~~~~~~~~~~~~kl  173 (362)
T d1q8ya_          94 PNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLMEIVDSPENLIQIKI  173 (362)
T ss_dssp             TTEEEEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECSCCSGGGEEEEEEETTTTEEEEEE
T ss_pred             ccceeeeeeecccccccccccccccccCCcHHHHHHHHHHHHHHHHHHhhhcCcccccCChhHeeeeccCcccccceeeE
Confidence            45667777766544 33333333444468999999999999999999975         56999997654      4999


Q ss_pred             eccCCceecCCC
Q 039406          219 ADFGLAKIASDV  230 (243)
Q Consensus       219 ~DFG~a~~~~~~  230 (243)
                      +|||.|+.....
T Consensus       174 ~dfg~s~~~~~~  185 (362)
T d1q8ya_         174 ADLGNACWYDEH  185 (362)
T ss_dssp             CCCTTCEETTBC
T ss_pred             eecccccccccc
Confidence            999999876543

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.13  E-value=6.9e-06  Score=64.11  Aligned_cols=83  Identities=8%  Similarity=-0.024  Sum_probs=56.5

Q ss_pred             HHHHHHhCCCCccceeeecCceEEEEEEecCCc-----------hhHHHHHHHHHHHHhcC-CCccceEEEEEEeCCeeE
Q 039406           92 EELARATDGFSDANLLRQDGFGYVHRGVLPNGK-----------EGEREFQAEVEIISRVH-HKHLVSLVGYYTAGSQRM  159 (243)
Q Consensus        92 ~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~-----------~~~~~~~~E~~~l~~l~-hp~iv~~~~~~~~~~~~~  159 (243)
                      .++......|...+..+.++.+.||+....+..           .....+.+|...|..+. +--+.+++.+...++..|
T Consensus         7 ~~l~~~~~~~~~~~~~~G~s~~~v~rv~~~~~~~vlk~~~~~~~~~~~~~~~E~~~l~~l~~~vpvP~vl~~~~~~~~~~   86 (263)
T d1j7la_           7 PELKKLIEKYRCVKDTEGMSPAKVYKLVGENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSN   86 (263)
T ss_dssp             HHHHHHHTTSEEEECSCCCSSSEEEEEECSSCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEE
T ss_pred             HHHHHhhhceEEEEcCCCCCCCcEEEEEeCCCeEEEEEcCCCcccchhhHHHHHHHHHHHhccCCCCcEEEEEecCCceE
Confidence            456666677776665555555788877533321           12334677888887774 434677888888889999


Q ss_pred             EEEeccCCCCHHHHh
Q 039406          160 LVYEFVLNNTLVFHL  174 (243)
Q Consensus       160 lv~e~~~~g~L~~~l  174 (243)
                      +||++++|..+.+..
T Consensus        87 lv~~~l~G~~~~~~~  101 (263)
T d1j7la_          87 LLMSEADGVLCSEEY  101 (263)
T ss_dssp             EEEECCSSEEHHHHT
T ss_pred             EEEEecccccccccc
Confidence            999999998776543

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=97.09  E-value=0.00033  Score=53.80  Aligned_cols=42  Identities=19%  Similarity=0.173  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHhcC--CCccceEEEEEEeCCeeEEEEeccCCCCH
Q 039406          129 EFQAEVEIISRVH--HKHLVSLVGYYTAGSQRMLVYEFVLNNTL  170 (243)
Q Consensus       129 ~~~~E~~~l~~l~--hp~iv~~~~~~~~~~~~~lv~e~~~~g~L  170 (243)
                      .+..|...|+.+.  .-.+.+++.+..+.+..++||++++|.++
T Consensus        50 ~l~~E~~~l~~L~~~gvpvP~v~~~~~~~~~~~~v~~~i~G~~~   93 (255)
T d1nd4a_          50 ELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQDL   93 (255)
T ss_dssp             CHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECCSSEET
T ss_pred             HHHHHHHHHHHHHhcCCCCCceeeecccccceEEEEEeeecccc
Confidence            4677888887763  23367788888888899999999987554

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=96.76  E-value=0.002  Score=53.01  Aligned_cols=63  Identities=11%  Similarity=0.024  Sum_probs=41.2

Q ss_pred             cceeeecCceEEEEEEecCCch--------------------hHHHHHHHHHHHHhcC-C--CccceEEEEEEeCCeeEE
Q 039406          104 ANLLRQDGFGYVHRGVLPNGKE--------------------GEREFQAEVEIISRVH-H--KHLVSLVGYYTAGSQRML  160 (243)
Q Consensus       104 ~~~lg~G~~g~V~~~~~~~~~~--------------------~~~~~~~E~~~l~~l~-h--p~iv~~~~~~~~~~~~~l  160 (243)
                      .+.||.|....||+.....+.+                    ...+...|.+.|+.+. +  ..+.+++.+  +....++
T Consensus        31 ~~eig~G~~N~vfrV~~~~~~~svivKqa~p~~r~~g~~~~~~~~R~~~E~~~L~~~~~~~p~~vP~v~~~--d~~~~~l  108 (392)
T d2pula1          31 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEMAVT  108 (392)
T ss_dssp             EEECCSSSSEEEEEEEC----CEEEEEEECCGGGC--CCCCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTTTEE
T ss_pred             EEEeCCCceEeEEEEEeCCCCeEEEEecCCchhcccCCCCCCCHHHHHHHHHHHHHhhhhCCCCcceEEEE--cCCCCEE
Confidence            5578999999999987544311                    2234567888887662 2  346666654  4556689


Q ss_pred             EEeccCCC
Q 039406          161 VYEFVLNN  168 (243)
Q Consensus       161 v~e~~~~g  168 (243)
                      |||++.+.
T Consensus       109 vmE~L~~~  116 (392)
T d2pula1         109 VMEDLSHL  116 (392)
T ss_dssp             EECCCTTS
T ss_pred             EEeccCCc
Confidence            99999764

>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Choline kinase
domain: Choline kinase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.97  E-value=0.046  Score=44.42  Aligned_cols=62  Identities=15%  Similarity=0.123  Sum_probs=41.7

Q ss_pred             cceeeecCceEEEEEEecCC------------------chhHHHHHHHHHHHHhcC-CCccceEEEEEEeCCeeEEEEec
Q 039406          104 ANLLRQDGFGYVHRGVLPNG------------------KEGEREFQAEVEIISRVH-HKHLVSLVGYYTAGSQRMLVYEF  164 (243)
Q Consensus       104 ~~~lg~G~~g~V~~~~~~~~------------------~~~~~~~~~E~~~l~~l~-hp~iv~~~~~~~~~~~~~lv~e~  164 (243)
                      ++.|+.|-.-.+|++...+.                  ........+|..+++.+. +.-..++++++..    .+||||
T Consensus        47 v~~l~GGltN~~y~v~~~~~~~~~~~~~~~vllRi~g~~~~~idr~~E~~i~~~ls~~gl~Pkll~~~~~----g~I~ef  122 (395)
T d1nw1a_          47 ISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNPETESHLVAESVIFTLLSERHLGPKLYGIFSG----GRLEEY  122 (395)
T ss_dssp             EEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSCCCHHHHHHHHHHHHHHHHTTSSSCEEEEETT----EEEECC
T ss_pred             EEEcCCccccceEEEEeCCCCccccCCCCcEEEEecCCcchhhHHHHHHHHHHHHHhCCCCCeEEEEcCC----ceEEEE
Confidence            45788888889998875432                  112334567999988884 4334578877643    689999


Q ss_pred             cCCCC
Q 039406          165 VLNNT  169 (243)
Q Consensus       165 ~~~g~  169 (243)
                      ++|..
T Consensus       123 i~g~~  127 (395)
T d1nw1a_         123 IPSRP  127 (395)
T ss_dssp             CCEEE
T ss_pred             ecccc
Confidence            97643

>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Homoserine kinase ThrB
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=86.50  E-value=0.37  Score=37.22  Aligned_cols=25  Identities=28%  Similarity=0.230  Sum_probs=20.9

Q ss_pred             hcCC--CcEEECCCCcEEEeccCCcee
Q 039406          202 HDDL--ANILLDFKFEAKVADFGLAKI  226 (243)
Q Consensus       202 H~~~--~NiLl~~~~~~kl~DFG~a~~  226 (243)
                      |.|+  +|||++.+...-|+||+.|..
T Consensus       187 HgDl~~dNvl~~~~~v~gvIDF~~~~~  213 (316)
T d2ppqa1         187 HADLFQDNVFFLGDELSGLIDFYFACN  213 (316)
T ss_dssp             CSCCCGGGEEEETTEEEEECCCTTCEE
T ss_pred             cCCcchhhhhcccccceeEeccccccc
Confidence            7665  799999887778999998864