Citrus Sinensis ID: 039409

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220----
Protein Sequence
MDSLFFHSPNSISSSESSFGSPESFPFYNNYLPFNENDSEEMLLYGLIAEATPEATSEALVSSKRIKEEEVSSTTEENPTKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGSSAILNFPVERVQESLKDMKCNTEEGCSPVVALKRKHSMRRKMVTNNKKHKERDNLRIENFVVLEDLGADYLEELLSSSESTTTTTARPR
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccEEEEEccccHHHHHHHHHHHHHHccccccccccccHHHHHHHcccccccccccccHHHHccccccccccccccHHHHcccccccccEEEEccccHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccHHHEHHcccccccccccccccccccccccccccccHHccccccccEEEEEEcccccEEEEEEcccccccEEEEcccccHHHHHHHHHHHHHHHHcccEEEcccHHHccccccccccccccccccHHHHHccccccccccccccccccccccccccEEEEccccHHHHHHHHHccccccccccccc
Coil and Loop (DISEMBL)
mdslffhspnsisssessfgspesfpfynnylpfnendsEEMLLYGLIAEATPEATSEALVSSKrikeeevsstteenptkeksyrgvrrrpwgkfAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFsmrgssailnFPVERVQESLkdmkcnteegcspvvALKRKHSMRRKMVtnnkkhkerdnlrieNFVVLEDLGADYLEELLsssestttttarpr
Flexible Loop (DISEMBL)
mdslffhspnsisssessfgspESFPFYNNYLPFNENDSEEMLLYGLIAEATPEATSEAlvsskrikeeevsstteenptkeksyrgvrrrpwgkfaaeirdstrhGIRVWLGTFDSAEAAALAYDQAAFSMRGSSAILNFPVERVQESLkdmkcnteegcspvvalkrkhsmrrkmvtnnkkhkerdnlrieNFVVLEDLGADYLEellsssestttttarpr
Low Complexity Region (SEG)
MDslffhspnsisssessfgspesfpfYNNYLPFNENDSEEMLLYGLIAEATPEATSEALVSSKRIKEEEVSSTTEENPTKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSaeaaalaydqaaFSMRGSSAILNFPVERVQESLKDMKCNTEEGCSPVVALKRKHSMRRKMVTNNKKHKERDNLRIENFVVLEDLGADYleellsssestttttARPR
Disordered region (IsUnstruct)
************************FPFYNNYLPFNENDSEEMLLYGLIA*****************************************RPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGSSAILNFPVERV*******************************************LRIENFVVLEDLGADYLEE****************
Disordered Region (DISOPRED)
*DSLFF********************FYNNYLPFNENDSEEMLLYG*****************************************VRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGSSAILNFPVE****************************************************VLEDLGADYLEE****************
Disordered Region (DISEMBL)
*********************PESFPFYNNYLPFNENDSEEMLLYGLIAEATPE*********************************VRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGSSAILNFPVERVQESLKDMKCNTEEGCSPVVALKRKHSMRRKMVTNNKKHKERDNLRIENFVVLEDLGADYLEELLS*************
Disordered Region (DISPRO)
*******************GSPESFPFYNNYLPFNENDSEEMLLYGLIAE*******************************EKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGSSAILNFPVERVQESL*****************************************IENFVVLEDLGADYLEELLSS************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDSLFFHSPNSISSSESSFGSPESFPFYNNYLPFNENDSEEMLLYGLIAEATPEATSEALVSSKRIKEEEVSSTTEENPTKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGSSAILNFPVERVQESLKDMKCNTEEGCSPVVALKRKHSMRRKMVTNNKKHKERDNLRIENFVVLEDLGADYLEELLSSSESTTTTTARPR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	224	2.2.26 [Sep-21-2011]
Q8LDC8	218	Ethylene-responsive trans	yes	no	0.933	0.958	0.601	4e-63
Q8VYM0	243	Ethylene-responsive trans	no	no	0.665	0.613	0.494	7e-39
Q9LND1	244	Ethylene-responsive trans	no	no	0.656	0.602	0.516	6e-32
O04681	161	Pathogenesis-related gene	N/A	no	0.517	0.720	0.537	1e-29
O80338	243	Ethylene-responsive trans	no	no	0.5	0.460	0.523	1e-28
O80337	268	Ethylene-responsive trans	no	no	0.491	0.410	0.5	3e-28
Q9LW50	237	Ethylene-responsive trans	N/A	no	0.495	0.468	0.472	7e-27
Q84XB3	244	Ethylene-responsive trans	N/A	no	0.495	0.454	0.52	1e-26
Q40479	233	Ethylene-responsive trans	N/A	no	0.495	0.476	0.472	1e-26
Q9LW48	282	Ethylene-responsive trans	N/A	no	0.343	0.273	0.649	2e-24

>sp|Q8LDC8|ERF92_ARATH Ethylene-responsive transcription factor 1B OS=Arabidopsis thaliana GN=ERF1B PE=1 SV=2

 Score =  241 bits (614), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 136/226 (60%), Positives = 160/226 (70%), Gaps = 17/226 (7%)

Query: 1   MDSLFFHSPNSISSSESSFGSPESFPFYNNY----LPFNENDSEEMLLYGLIAEATPEAT 56
           MD     SP S  S E S GS       ++     LPFNENDSEEM LYGLI ++T +  
Sbjct: 1   MDPFLIQSPFSGFSPEYSIGSSPDSFSSSSSNNYSLPFNENDSEEMFLYGLIEQSTQQTY 60

Query: 57  SEALVSSKRIKEEEVSSTTEENPTKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFD 116
            ++   S+ +  + VSS        EKSYRGVRRRPWGKFAAEIRDSTR+GIRVWLGTF+
Sbjct: 61  IDS--DSQDLPIKSVSSRK-----SEKSYRGVRRRPWGKFAAEIRDSTRNGIRVWLGTFE 113

Query: 117 SAEAAALAYDQAAFSMRGSSAILNFPVERVQESLKDMKCNTEEGCSPVVALKRKHSMRRK 176
           SAE AALAYDQAAFSMRGSSAILNF  ERVQESL ++K   E+GCSPVVALKRKHSMRR+
Sbjct: 114 SAEEAALAYDQAAFSMRGSSAILNFSAERVQESLSEIKYTYEDGCSPVVALKRKHSMRRR 173

Query: 177 MVTNNKKHKERD----NLRIENFVVLEDLGADYLEELLSSSESTTT 218
           M   NKK K+ D    +++++N VV EDLG  YLEELL SSE++ T
Sbjct: 174 MT--NKKTKDSDFDHRSVKLDNVVVFEDLGEQYLEELLGSSENSGT 217

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression during the plant development, and/or mediated by stress factors and by components of stress signal transduction pathways. Seems to be a key integrator of ethylene and jasmonate signals in the regulation of ethylene/jasmonate-dependent defenses. Can mediate resistance to necrotizing fungi (Botrytis cinerea and Plectosphaerella cucumerina) and to soil borne fungi (Fusarium oxysporum conglutinans and Fusiarium oxysporum lycopersici), but probably not to necrotizing bacteria (Pseudomonas syringae tomato).
Arabidopsis thaliana (taxid: 3702)

>sp|Q8VYM0|ERF93_ARATH Ethylene-responsive transcription factor 15 OS=Arabidopsis thaliana GN=ERF15 PE=2 SV=1

 Score =  160 bits (405), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 94/190 (49%), Positives = 117/190 (61%), Gaps = 41/190 (21%)

Query: 60  LVSSKRIKEEEVSSTTEENPT---KEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFD 116
           ++  + I+  +VS++ EE      +E+SYRGVR+RPWGKFAAEIRDSTR+GIRVWLGTFD
Sbjct: 58  MMIKEEIQNGDVSNSEEEEKVGIDEERSYRGVRKRPWGKFAAEIRDSTRNGIRVWLGTFD 117

Query: 117 SAEAAALAYDQAAFSMRGSSAILNFPVERVQESLKDMK-CNTEEGCSPVVALKRKHSMRR 175
            AE AALAYDQAAF+ +GS A LNFPVE V+ESLK M+  N  +G SPV+ALKRKHS+R 
Sbjct: 118 KAEEAALAYDQAAFATKGSLATLNFPVEVVRESLKKMENVNLHDGGSPVMALKRKHSLR- 176

Query: 176 KMVTNNKKHKERDNLRIE--------------------------------NFVVLEDLGA 203
               N  + K+R +                                      VV EDLGA
Sbjct: 177 ----NRPRGKKRSSSSSSSSSNSSSCSSSSSTSSTSRSSSKQSVVKQESGTLVVFEDLGA 232

Query: 204 DYLEELLSSS 213
           +YLE+LL SS
Sbjct: 233 EYLEQLLMSS 242

May act as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LND1|ERF94_ARATH Ethylene-responsive transcription factor ERF094 OS=Arabidopsis thaliana GN=ERF094 PE=2 SV=1

 Score =  137 bits (345), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 93/180 (51%), Positives = 113/180 (62%), Gaps = 33/180 (18%)

Query: 66  IKEEEVSSTTEENPTKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAY 125
           I +EE    T     +EKSYRGVR+RPWGKFAAEIRDSTR GIRVWLGTFD+AEAAALAY
Sbjct: 63  IIKEEGKEATVAAEEEEKSYRGVRKRPWGKFAAEIRDSTRKGIRVWLGTFDTAEAAALAY 122

Query: 126 DQAAFSMRGSSAILNFPVERVQESLKDMK-CNTEEGCSPVVALKRKHSMRRKMVTNNK-- 182
           DQAAF+++GS A+LNFP + V+ESL+ M+  N  +G SPV+ALKRKHSMR +     K  
Sbjct: 123 DQAAFALKGSLAVLNFPADVVEESLRKMENVNLNDGESPVIALKRKHSMRNRPRGKKKSS 182

Query: 183 ---------------------------KHKERDNLRIEN---FVVLEDLGADYLEELLSS 212
                                        K+   +  E+    VVLEDLGA+YLEEL+ S
Sbjct: 183 SSSTLTSSPSSSSSYSSSSSSSSLSSRSRKQSVVMTQESNTTLVVLEDLGAEYLEELMRS 242

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Acts as an essential integrator of the JA and ethylene signal transduction pathways. Activates the expression of the PDF1.2A gene.

Arabidopsis thaliana (taxid: 3702)

>sp|O04681|PTI5_SOLLC Pathogenesis-related genes transcriptional activator PTI5 OS=Solanum lycopersicum GN=PTI5 PE=2 SV=1

 Score =  129 bits (324), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 64/119 (53%), Positives = 80/119 (67%), Gaps = 3/119 (2%)

Query: 32  LPFNENDSEEMLLYGLIAEATPEATSEALVSSKRIKEEEVSSTTEENPTKEKSYRGVRRR 91
           LP NENDS+EM+LY ++ EA           ++ +    +    +      K YRGVRRR
Sbjct: 9   LPLNENDSQEMVLYEVLNEANALNIPYLPQRNQLLPRNNILRPLQ---CIGKKYRGVRRR 65

Query: 92  PWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGSSAILNFPVERVQESL 150
           PWGK+AAEIRDS RHG RVWLGTF++AE AALAYD+AAF MRG+ A+LNFP E V  S+
Sbjct: 66  PWGKYAAEIRDSARHGARVWLGTFETAEEAALAYDRAAFRMRGAKALLNFPSEIVNASV 124

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates plants defense genes. Can confer resistance to Pseudomonas syringae tomato by potentiating the transcription of a set of pathogenesis related genes, downstream to a defense signaling pathway involving PTO and PRF, but probably independent of ethylene, jasmonate and salicylic acid.

Solanum lycopersicum (taxid: 4081)

>sp|O80338|EF101_ARATH Ethylene-responsive transcription factor 2 OS=Arabidopsis thaliana GN=ERF2 PE=2 SV=1

 Score =  126 bits (317), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 67/128 (52%), Positives = 85/128 (66%), Gaps = 16/128 (12%)

Query: 32  LPFNENDSEEMLLYGLIAEATPEATSEALVS------SKRIKEEEVSSTTEENP------ 79
           LP  ENDSE+ML+YGL+ +A    TS + +S      + +++  E  +  EE P      
Sbjct: 48  LPLKENDSEDMLVYGLLKDAFHFDTSSSDLSCLFDFPAVKVEPTENFTAMEEKPKKAIPV 107

Query: 80  ----TKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGS 135
                K K YRGVR+RPWGKFAAEIRD  ++G RVWLGTF++AE AALAYD AAF MRGS
Sbjct: 108 TETAVKAKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDIAAFRMRGS 167

Query: 136 SAILNFPV 143
            A+LNFP+
Sbjct: 168 RALLNFPL 175

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Involved in disease resistance pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|O80337|EF100_ARATH Ethylene-responsive transcription factor 1A OS=Arabidopsis thaliana GN=ERF1A PE=1 SV=2

 Score =  125 bits (313), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 69/138 (50%), Positives = 86/138 (62%), Gaps = 28/138 (20%)

Query: 32  LPFNENDSEEMLLYGLIAEA-------------------------TPEATSEALVSSKRI 66
           LP  ENDSE+ML+YG++ +A                         TPE  S A V S  +
Sbjct: 71  LPLKENDSEDMLVYGILNDAFHGGWEPSSSSSDEDRSSFPSVKIETPE--SFAAVDSVPV 128

Query: 67  KEEEVSSTTEE-NPTKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAY 125
           K+E+ S  +      K K YRGVR+RPWGKFAAEIRD  ++G RVWLGTF++AE AALAY
Sbjct: 129 KKEKTSPVSAAVTAAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAY 188

Query: 126 DQAAFSMRGSSAILNFPV 143
           D+AAF MRGS A+LNFP+
Sbjct: 189 DRAAFRMRGSRALLNFPL 206

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LW50|ERF2_NICSY Ethylene-responsive transcription factor 2 OS=Nicotiana sylvestris GN=ERF2 PE=2 SV=1

 Score =  120 bits (302), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 61/129 (47%), Positives = 83/129 (64%), Gaps = 18/129 (13%)

Query: 32  LPFNENDSEEMLLYGLIAEATPEATSEALVSSKRIK---EEEVSSTTEENPT-------- 80
           LP   +DSE+M++YGL+++A     +   ++S  IK    EE+   T   P+        
Sbjct: 32  LPLKVDDSEDMVIYGLLSDALTTGWTPFNLTSTEIKAEPREEIEPATSPVPSVAPPAETT 91

Query: 81  -------KEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMR 133
                  K + YRGVR+RPWGKFAAEIRD  ++G RVWLGT+++AE AALAYD+AA+ MR
Sbjct: 92  TAQAVVPKGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMR 151

Query: 134 GSSAILNFP 142
           GS A+LNFP
Sbjct: 152 GSKALLNFP 160

Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator.

Nicotiana sylvestris (taxid: 4096)

>sp|Q84XB3|ERF1_SOLLC Ethylene-responsive transcription factor 1 OS=Solanum lycopersicum GN=ERF1 PE=2 SV=1

 Score =  120 bits (300), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 65/125 (52%), Positives = 82/125 (65%), Gaps = 14/125 (11%)

Query: 32  LPFNENDSEEMLLYGLIAEA-----TPE-ATSEALVSSKRIKEEEVSSTTEENPT----- 80
           LP   NDSE+M++YG + +A     TP   TSE +    R + E   ST+   PT     
Sbjct: 40  LPLKVNDSEDMVIYGFLQDAFSIGWTPSNLTSEEVKLEPREEIEPAMSTSVSPPTVAPAA 99

Query: 81  ---KEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGSSA 137
              K + YRGVR+RPWGKFAAEIRD  ++G RVWLGT++SAE AALAY +AAF MRG+ A
Sbjct: 100 LQPKGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYESAEEAALAYGKAAFRMRGTKA 159

Query: 138 ILNFP 142
           +LNFP
Sbjct: 160 LLNFP 164

Involved in the regulation of gene expression during fruit ripening, by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Probably acts as a transcriptional activator and may be involved in disease resistance pathways.

Solanum lycopersicum (taxid: 4081)

>sp|Q40479|ERF2_TOBAC Ethylene-responsive transcription factor 2 OS=Nicotiana tabacum GN=ERF2 PE=2 SV=1

 Score =  119 bits (299), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 61/129 (47%), Positives = 83/129 (64%), Gaps = 18/129 (13%)

Query: 32  LPFNENDSEEMLLYGLIAEATPEATSEALVSSKRIK---EEEVSSTTEENPT-------- 80
           LP   +DSE+M++YGL+++A     +   ++S  IK    EE+   T   P+        
Sbjct: 28  LPLKVDDSEDMVIYGLLSDALTAGWTPFNLTSTEIKAEPREEIEPATIPVPSVAPPAETT 87

Query: 81  -------KEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMR 133
                  K + YRGVR+RPWGKFAAEIRD  ++G RVWLGT+++AE AALAYD+AA+ MR
Sbjct: 88  TAQAVVPKGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMR 147

Query: 134 GSSAILNFP 142
           GS A+LNFP
Sbjct: 148 GSKALLNFP 156

Acts as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate.

Nicotiana tabacum (taxid: 4097)

>sp|Q9LW48|ERF5_NICSY Ethylene-responsive transcription factor 5 OS=Nicotiana sylvestris GN=ERF5 PE=2 SV=1

 Score =  112 bits (280), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 50/77 (64%), Positives = 61/77 (79%)

Query: 68  EEEVSSTTEENPTKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQ 127
           ++EV    E  PT++K YRGVR+RPWGKFAAEIRD  R G RVWLGTFD+A  AA AYD+
Sbjct: 121 KQEVVQKVELAPTEKKHYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDR 180

Query: 128 AAFSMRGSSAILNFPVE 144
           AA+ +RGS AI+NFP+E
Sbjct: 181 AAYKLRGSKAIVNFPLE 197

Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator.

Nicotiana sylvestris (taxid: 4096)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	224
255581463	224	Ethylene-responsive transcription factor	0.986	0.986	0.746	1e-78
300079016	216	ethylene response factor 10 [Actinidia d	0.937	0.972	0.639	6e-71
224110988	221	AP2/ERF domain-containing transcription	0.955	0.968	0.699	7e-71
292668935	229	AP2 domain class transcription factor [M	0.941	0.921	0.740	5e-69
449432562	228	PREDICTED: ethylene-responsive transcrip	0.919	0.903	0.680	8e-67
21554205	218	ethylene response factor ERF1 [Arabidops	0.933	0.958	0.615	2e-63
350535226	245	ethylene responsive element binding prot	0.808	0.738	0.673	2e-62
359477725	267	PREDICTED: LOW QUALITY PROTEIN: ethylene	0.790	0.662	0.722	1e-61
15229405	218	ethylene-responsive transcription factor	0.933	0.958	0.601	2e-61
297831062	218	ATERF1/ERF1 [Arabidopsis lyrata subsp. l	0.933	0.958	0.606	8e-61

>gi|255581463|ref|XP_002531539.1| Ethylene-responsive transcription factor 1B, putative [Ricinus communis] gi|223528856|gb|EEF30858.1| Ethylene-responsive transcription factor 1B, putative [Ricinus communis]

 Score =  298 bits (763), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 168/225 (74%), Positives = 187/225 (83%), Gaps = 4/225 (1%)

Query: 1   MDSLFFHSPNSISSSESSFGSPESF-PFYNNYLPFNENDSEEMLLYGLIAEATPEATSEA 59
           MD   FHSPNS  SSESSFGSPESF  F  N LPFNENDSEEMLLYGLI+EAT E TS+ 
Sbjct: 1   MDPFNFHSPNSDFSSESSFGSPESFYGFSQNSLPFNENDSEEMLLYGLISEATQE-TSKI 59

Query: 60  LVSSKRIKEEEVSSTTEENPTKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAE 119
             S++ +KEEEVSS  +E+P KEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAE
Sbjct: 60  DYSNRNLKEEEVSSIVKESPKKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAE 119

Query: 120 AAALAYDQAAFSMRGSSAILNFPVERVQESLKDMKCNTEEGCSPVVALKRKHSMRRKMVT 179
           AAALAYDQAAFSMRG +AILNFP ERV+ESL++MK + E+GCSPVVALKRKHSMRRKM++
Sbjct: 120 AAALAYDQAAFSMRGPNAILNFPAERVKESLEEMKYSDEDGCSPVVALKRKHSMRRKMMS 179

Query: 180 NNKKHKERDNLRIENFVVLEDLGADYLEELL-SSSESTTTTTARP 223
              K KERD  RI+N VVLEDLGADYLE+LL SS  +    + RP
Sbjct: 180 RTSK-KERDVRRIDNVVVLEDLGADYLEQLLISSDHNQNANSNRP 223

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|300079016|gb|ADJ67439.1| ethylene response factor 10 [Actinidia deliciosa]

 Score =  272 bits (696), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 140/219 (63%), Positives = 173/219 (78%), Gaps = 9/219 (4%)

Query: 1   MDSLFFHSPNSISSSESSFGSPESFP-----FYNNYLPFNENDSEEMLLYGLIAEATPEA 55
           M+S F   P    S ESS GSP+SF      FY+N LPFN NDSEEMLL G++AE   + 
Sbjct: 1   MNSQFTQYPYLDDSPESSLGSPQSFSWDDLLFYHNSLPFNVNDSEEMLLLGVLAEGASKE 60

Query: 56  TSEALVSSKRIKEEEVSSTT-EENPTKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGT 114
           +SE  +SS  IKEEEV+S   ++ P KEKSYRGVRRRPWGKFAAEIRDSTR+GIRVWLGT
Sbjct: 61  SSET-ISSGGIKEEEVTSVAKDQKPIKEKSYRGVRRRPWGKFAAEIRDSTRNGIRVWLGT 119

Query: 115 FDSAEAAALAYDQAAFSMRGSSAILNFPVERVQESLKDMKCNTEEGCSPVVALKRKHSMR 174
           FDSAE AALAYDQAAFS+RGS A+LNFPVERV++SL++MK   EEGCSPVVALK++HSMR
Sbjct: 120 FDSAEEAALAYDQAAFSVRGSMAVLNFPVERVKDSLREMKYGCEEGCSPVVALKKRHSMR 179

Query: 175 RKMVTNNKKHKERDNLRIENFVVLEDLGADYLEELLSSS 213
            +  ++ K++K    +++++ V+LEDLGA+YLEELL+SS
Sbjct: 180 ER--SSYKRNKANKEVKVDHVVILEDLGAEYLEELLNSS 216

Source: Actinidia deliciosa

Species: Actinidia deliciosa

Genus: Actinidia

Family: Actinidiaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110988|ref|XP_002315707.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222864747|gb|EEF01878.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  272 bits (695), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 156/223 (69%), Positives = 176/223 (78%), Gaps = 9/223 (4%)

Query: 1   MDSLFFHSPNSISSSESSFGSPESF---PFYNNYLPFNENDSEEMLLYGLIAEATPEATS 57
           MD+  FHS NS  SSES F SP+SF    F  + LPFNENDS+EMLL+ LI+EAT E TS
Sbjct: 1   MDASIFHSANSDFSSESCFRSPDSFYSQSFNQSSLPFNENDSDEMLLFELISEATQE-TS 59

Query: 58  EALVSSKRIKEEEVSSTTEENPTKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDS 117
                +  +KEEEVSS  +  P KEKSYRGVRRRPWGKFAAEIRDSTR+GIRVWLGTFDS
Sbjct: 60  RTTFCNGIVKEEEVSSVAKRTPDKEKSYRGVRRRPWGKFAAEIRDSTRNGIRVWLGTFDS 119

Query: 118 AEAAALAYDQAAFSMRGSSAILNFPVERVQESLKDMKC--NTEEGCSPVVALKRKHSMRR 175
           AEAAALAYDQAAFSMRG   ILNFPVERV+ESLKDMKC  + E+GCSPVVALKRK+SMRR
Sbjct: 120 AEAAALAYDQAAFSMRGPGTILNFPVERVRESLKDMKCSHHYEDGCSPVVALKRKYSMRR 179

Query: 176 KMVTNNKKHKERDNLRIENFVVLEDLGADYLEELLSSSESTTT 218
           K+ +  KK +   N RIEN VVLEDLGADYLE+LL+SS   T+
Sbjct: 180 KLGSRGKKER---NARIENVVVLEDLGADYLEQLLNSSGKATS 219

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|292668935|gb|ADE41122.1| AP2 domain class transcription factor [Malus x domestica]

 Score =  266 bits (680), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 163/220 (74%), Positives = 177/220 (80%), Gaps = 9/220 (4%)

Query: 6   FHSPNSISSSESSFGSP----ESFPFYNNYLPFNENDSEEMLLYGLIAEATPEATSEALV 61
           F SPNS  S ESSFGS     +   F NN LPFNENDSEEMLLYGLI+E T E TS   V
Sbjct: 6   FDSPNSNLSPESSFGSSFSWDDGLKFGNNSLPFNENDSEEMLLYGLISEGTQEITSSVSV 65

Query: 62  SSKRIKEEEVSSTTEE-NPTKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEA 120
            +  IKEEEVSS +EE NP KEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEA
Sbjct: 66  FANPIKEEEVSSASEEENPKKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEA 125

Query: 121 AALAYDQAAFSMRGSSAILNFPVERVQESLKDMKCNTE--EGCSPVVALKRKHSMRRKMV 178
           AALAYDQAAFSMRGS+A+LNFPVERV++SL+D+   T   EGCSPVVALKRKHSMRRK  
Sbjct: 126 AALAYDQAAFSMRGSAAVLNFPVERVRKSLRDINYGTSDLEGCSPVVALKRKHSMRRK-- 183

Query: 179 TNNKKHKERDNLRIENFVVLEDLGADYLEELLSSSESTTT 218
           T N K K   ++RIEN VV EDLG DYLEELL+SSEST+T
Sbjct: 184 TGNTKSKVDRDVRIENVVVFEDLGIDYLEELLNSSESTST 223

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432562|ref|XP_004134068.1| PREDICTED: ethylene-responsive transcription factor 1B-like [Cucumis sativus] gi|449524256|ref|XP_004169139.1| PREDICTED: ethylene-responsive transcription factor 1B-like [Cucumis sativus]

 Score =  259 bits (661), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 151/222 (68%), Positives = 174/222 (78%), Gaps = 16/222 (7%)

Query: 1   MDSLFFHSPNSISSSESSFGSPESFPFYN---NYLPFNENDSEEMLLYGLIAEATPEATS 57
           MD   F SP S  SSESSFGSPES  F N   N+LPFNENDSEEMLLYGLI+E T E+  
Sbjct: 1   MDYSAFISPLSDFSSESSFGSPES-SFTNLDHNFLPFNENDSEEMLLYGLISEGTYESFD 59

Query: 58  EALVSSKRIKEEEVSSTTEENPTKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDS 117
            + + + ++KEEEV S  EE+P KE++YRGVRRRPWGKFAAEIRDSTRHG RVWLGTFDS
Sbjct: 60  TS-IGTVQVKEEEVDSIGEESPKKERAYRGVRRRPWGKFAAEIRDSTRHGTRVWLGTFDS 118

Query: 118 AEAAALAYDQAAFSMRGSSAILNFPVERVQESLKDMKCNT--------EEGCSPVVALKR 169
           AEAAALAYDQAAFSMRG++AILNFPV+RV+ESLK+M   +        E+G SPVVALKR
Sbjct: 119 AEAAALAYDQAAFSMRGAAAILNFPVDRVRESLKEMNAGSGGSGDSLAEDGGSPVVALKR 178

Query: 170 KHSMRRKMVTNNKKHKERDNLRIENFVVLEDLGADYLEELLS 211
           KHS+RRK +   KK KERD +RI+  VVLEDLG +YLEELL 
Sbjct: 179 KHSIRRKAI--GKKSKERD-VRIQTVVVLEDLGTEYLEELLG 217

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21554205|gb|AAM63284.1| ethylene response factor ERF1 [Arabidopsis thaliana]

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 139/226 (61%), Positives = 161/226 (71%), Gaps = 17/226 (7%)

Query: 1   MDSLFFHSPNSISSSESSFGSPESFPFYNNY----LPFNENDSEEMLLYGLIAEATPEAT 56
           MD L   SP S  S E S GS       ++     LPFNENDSEEM LYGLI ++T +  
Sbjct: 1   MDPLLIQSPFSGFSPEYSIGSSPESFSSSSSNNYSLPFNENDSEEMFLYGLIEQSTQQTY 60

Query: 57  SEALVSSKRIKEEEVSSTTEENPTKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFD 116
            ++ +    IK   VSS        EKSYRGVRRRPWGKFAAEIRDSTR+GIRVWLGTF+
Sbjct: 61  IDSELQDLPIKS--VSSRK-----SEKSYRGVRRRPWGKFAAEIRDSTRNGIRVWLGTFE 113

Query: 117 SAEAAALAYDQAAFSMRGSSAILNFPVERVQESLKDMKCNTEEGCSPVVALKRKHSMRRK 176
           SAE AALAYDQAAFSMRGSSAILNF  ERVQESL ++KC  E+GCSPVVALKRKHSMRR+
Sbjct: 114 SAEEAALAYDQAAFSMRGSSAILNFSAERVQESLSEIKCTYEDGCSPVVALKRKHSMRRR 173

Query: 177 MVTNNKKHKERD----NLRIENFVVLEDLGADYLEELLSSSESTTT 218
           M   NKK K+ D    +++++N VV EDLG  YLEELL SSE++ T
Sbjct: 174 MT--NKKTKDSDFDHRSVKLDNVVVFEDLGEQYLEELLGSSENSGT 217

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350535226|ref|NP_001234695.1| ethylene responsive element binding protein [Solanum lycopersicum] gi|25992126|gb|AAN77067.1| ethylene responsive element binding protein [Solanum lycopersicum]

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 130/193 (67%), Positives = 154/193 (79%), Gaps = 12/193 (6%)

Query: 31  YLPFNENDSEEMLLYGLIAEATPEATSEALVSSKRIKEEEVSST---TEENPTKEKSYRG 87
           YLPFN NDSEEMLL+G++  A  E TSE  V+S R+KEEEV+S     E  P KEKSYRG
Sbjct: 35  YLPFNVNDSEEMLLFGVLNAAHEETTSET-VTSHRVKEEEVTSESEVIEAIPAKEKSYRG 93

Query: 88  VRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGSSAILNFPVERVQ 147
           VRRRPWGKFAAEIRDSTR+G+RVWLGTFDSAE AALAYDQAAFSMRG+SAILNFPVE V+
Sbjct: 94  VRRRPWGKFAAEIRDSTRNGVRVWLGTFDSAEDAALAYDQAAFSMRGNSAILNFPVETVR 153

Query: 148 ESLKDMKCNTEEGCSPVVALKRKHSMRRKMVTNNKK-------HKERDNLRIENFVVLED 200
           +SL+DMKC+ ++ CSPVVALK++HSMR++  TN+KK        +E     + N VV ED
Sbjct: 154 DSLRDMKCHVDDDCSPVVALKKRHSMRKRS-TNSKKVNSISKVVREVKMENVNNVVVFED 212

Query: 201 LGADYLEELLSSS 213
           LGADYLE+LLS+S
Sbjct: 213 LGADYLEQLLSTS 225

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477725|ref|XP_002281052.2| PREDICTED: LOW QUALITY PROTEIN: ethylene-responsive transcription factor 1B [Vitis vinifera]

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 133/184 (72%), Positives = 158/184 (85%), Gaps = 7/184 (3%)

Query: 28  YNNYLPFNENDSEEMLLYGLIAEATPEATSEALVSSKRIKEEEVSSTTEENPTKEKSYRG 87
           + N LPFNENDS+EMLL G++A +T E TSE  VS  R+KEEEV  T++ENP KEKSYRG
Sbjct: 25  WENSLPFNENDSQEMLLLGMLASSTQE-TSET-VSLNRVKEEEV--TSQENPEKEKSYRG 80

Query: 88  VRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGSSAILNFPVERVQ 147
           VRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAF+MRG +A+LNFPVERV+
Sbjct: 81  VRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFAMRGPAAVLNFPVERVK 140

Query: 148 ESLKDMKCNTEEGCSPVVALKRKHSMRRKMVTNNKKHKERDNLRIENFVVLEDLGADYLE 207
           ES++++KC  EEG SPVVALK++HSMRRK  +  KKHK  + +R+EN VVLEDLG +YLE
Sbjct: 141 ESMQEIKCILEEGGSPVVALKKRHSMRRK--SPCKKHKS-EEVRLENVVVLEDLGTEYLE 197

Query: 208 ELLS 211
           +LL+
Sbjct: 198 QLLT 201

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15229405|ref|NP_188965.1| ethylene-responsive transcription factor 1B [Arabidopsis thaliana] gi|57012702|sp|Q8LDC8.2|ERF92_ARATH RecName: Full=Ethylene-responsive transcription factor 1B; Short=AtERF1B; AltName: Full=Ethylene-responsive element-binding factor 1B; Short=EREBP-1B gi|16226399|gb|AAL16158.1|AF428390_1 AT3g23240/K14B15_13 [Arabidopsis thaliana] gi|4128208|gb|AAD03544.1| ethylene response factor 1 [Arabidopsis thaliana] gi|4128210|gb|AAD03545.1| ethylene response factor 1 [Arabidopsis thaliana] gi|7939534|dbj|BAA95737.1| ethylene response DNA binding protein-like [Arabidopsis thaliana] gi|22137228|gb|AAM91459.1| AT3g23240/K14B15_13 [Arabidopsis thaliana] gi|332643217|gb|AEE76738.1| ethylene-responsive transcription factor 1B [Arabidopsis thaliana]

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 136/226 (60%), Positives = 160/226 (70%), Gaps = 17/226 (7%)

Query: 1   MDSLFFHSPNSISSSESSFGSPESFPFYNNY----LPFNENDSEEMLLYGLIAEATPEAT 56
           MD     SP S  S E S GS       ++     LPFNENDSEEM LYGLI ++T +  
Sbjct: 1   MDPFLIQSPFSGFSPEYSIGSSPDSFSSSSSNNYSLPFNENDSEEMFLYGLIEQSTQQTY 60

Query: 57  SEALVSSKRIKEEEVSSTTEENPTKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFD 116
            ++   S+ +  + VSS        EKSYRGVRRRPWGKFAAEIRDSTR+GIRVWLGTF+
Sbjct: 61  IDS--DSQDLPIKSVSSRK-----SEKSYRGVRRRPWGKFAAEIRDSTRNGIRVWLGTFE 113

Query: 117 SAEAAALAYDQAAFSMRGSSAILNFPVERVQESLKDMKCNTEEGCSPVVALKRKHSMRRK 176
           SAE AALAYDQAAFSMRGSSAILNF  ERVQESL ++K   E+GCSPVVALKRKHSMRR+
Sbjct: 114 SAEEAALAYDQAAFSMRGSSAILNFSAERVQESLSEIKYTYEDGCSPVVALKRKHSMRRR 173

Query: 177 MVTNNKKHKERD----NLRIENFVVLEDLGADYLEELLSSSESTTT 218
           M   NKK K+ D    +++++N VV EDLG  YLEELL SSE++ T
Sbjct: 174 MT--NKKTKDSDFDHRSVKLDNVVVFEDLGEQYLEELLGSSENSGT 217

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297831062|ref|XP_002883413.1| ATERF1/ERF1 [Arabidopsis lyrata subsp. lyrata] gi|297329253|gb|EFH59672.1| ATERF1/ERF1 [Arabidopsis lyrata subsp. lyrata]

 Score =  239 bits (609), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 137/226 (60%), Positives = 159/226 (70%), Gaps = 17/226 (7%)

Query: 1   MDSLFFHSPNSISSSESSFGSPESFPFYNNY----LPFNENDSEEMLLYGLIAEATPEAT 56
           MD  F  SP S  S E S GS       ++     LPFNENDSEEM LYGLI ++T    
Sbjct: 1   MDPSFLQSPLSSFSPEYSTGSSPESFSSSSSNNYSLPFNENDSEEMFLYGLIKQSTQRNF 60

Query: 57  SEALVSSKRIKEEEVSSTTEENPTKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFD 116
            E+      +++  V S +  N   EKSYRGVRRRPWGKFAAEIRDSTR+GIRVWLGTF+
Sbjct: 61  IES-----NLQDLPVKSVSSRN--SEKSYRGVRRRPWGKFAAEIRDSTRNGIRVWLGTFE 113

Query: 117 SAEAAALAYDQAAFSMRGSSAILNFPVERVQESLKDMKCNTEEGCSPVVALKRKHSMRRK 176
           SAE AALAYDQAAFSMRGSSAILNF  ERVQESL +MK   E+GCSPVVALKRKHSMRR+
Sbjct: 114 SAEEAALAYDQAAFSMRGSSAILNFSPERVQESLSEMKYTYEDGCSPVVALKRKHSMRRR 173

Query: 177 MVTNNKKHKERD----NLRIENFVVLEDLGADYLEELLSSSESTTT 218
               NKK K+ D    +++++N VV EDLG  YLEELL SSE++ T
Sbjct: 174 --KTNKKTKDSDFDHRSVKLDNVVVFEDLGEQYLEELLGSSENSGT 217

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	224
TAIR|locus:2086223	218	ERF1 "ethylene response factor	0.75	0.770	0.598	2.9e-48
TAIR|locus:2038500	244	ORA59 "octadecanoid-responsive	0.580	0.532	0.503	1e-32
TAIR|locus:2042496	243	ERF15 "ethylene-responsive ele	0.535	0.493	0.540	4.3e-32
UNIPROTKB|Q5MFV1	303	BIERF3 "BTH-induced ERF transc	0.415	0.306	0.484	1.4e-22
TAIR|locus:2171514	243	ERF2 "ethylene responsive elem	0.535	0.493	0.445	4.3e-22
TAIR|locus:2129116	268	ERF-1 "ethylene responsive ele	0.544	0.455	0.412	1.9e-19
TAIR|locus:2124504	303	AT4G18450 [Arabidopsis thalian	0.535	0.396	0.388	1.3e-18
TAIR|locus:2171529	300	ERF5 "ethylene responsive elem	0.629	0.47	0.375	2.2e-18
TAIR|locus:2086203	139	ESE1 "ethylene and salt induci	0.334	0.539	0.558	4.6e-18
TAIR|locus:2176187	221	AT5G51190 [Arabidopsis thalian	0.343	0.348	0.537	1.2e-17

TAIR|locus:2086223 ERF1 "ethylene response factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
 Identities = 109/182 (59%), Positives = 129/182 (70%)

Query:    29 NNY-LPFNENDSEEMLLYGLIAEATPEATSEALVSSKRIKEEEVSSTTEENPTKEKSYRG 87
             NNY LPFNENDSEEM LYGLI ++T +   ++   S+ +  + VSS   E     KSYRG
Sbjct:    32 NNYSLPFNENDSEEMFLYGLIEQSTQQTYIDS--DSQDLPIKSVSSRKSE-----KSYRG 84

Query:    88 VRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXXFSMRGSSAILNFPVERVQ 147
             VRRRPWGKFAAEIRDSTR+GIRVWLGTF+S            FSMRGSSAILNF  ERVQ
Sbjct:    85 VRRRPWGKFAAEIRDSTRNGIRVWLGTFESAEEAALAYDQAAFSMRGSSAILNFSAERVQ 144

Query:   148 ESLKDMKCNTEEGCSPVVALKRKHSMRRKMVTNNKKHKERD----NLRIENFVVLEDLGA 203
             ESL ++K   E+GCSPVVALKRKHSMRR+M   NKK K+ D    +++++N VV EDLG 
Sbjct:   145 ESLSEIKYTYEDGCSPVVALKRKHSMRRRMT--NKKTKDSDFDHRSVKLDNVVVFEDLGE 202

Query:   204 DY 205
              Y
Sbjct:   203 QY 204

GO:0003677 "DNA binding" evidence=IEA;IDA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0006952 "defense response" evidence=IMP

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=TAS

GO:0009873 "ethylene mediated signaling pathway" evidence=IGI;TAS

TAIR|locus:2038500 ORA59 "octadecanoid-responsive Arabidopsis AP2/ERF 59" [Arabidopsis thaliana (taxid:3702)]

 Score = 327 (120.2 bits), Expect = 1.0e-32, Sum P(2) = 1.0e-32
 Identities = 66/131 (50%), Positives = 84/131 (64%)

Query:    47 LIAEATPEATSEALVSSKRIKEEEVSSTTEENPTKEKSYRGVRRRPWGKFAAEIRDSTRH 106
             L++  T     +       I +EE    T     +EKSYRGVR+RPWGKFAAEIRDSTR 
Sbjct:    44 LLSSPTDNYCDDFFAFESSIIKEEGKEATVAAEEEEKSYRGVRKRPWGKFAAEIRDSTRK 103

Query:   107 GIRVWLGTFDSXXXXXXXXXXXXFSMRGSSAILNFPVERVQESLKDMK-CNTEEGCSPVV 165
             GIRVWLGTFD+            F+++GS A+LNFP + V+ESL+ M+  N  +G SPV+
Sbjct:   104 GIRVWLGTFDTAEAAALAYDQAAFALKGSLAVLNFPADVVEESLRKMENVNLNDGESPVI 163

Query:   166 ALKRKHSMRRK 176
             ALKRKHSMR +
Sbjct:   164 ALKRKHSMRNR 174

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0009861 "jasmonic acid and ethylene-dependent systemic resistance" evidence=IMP

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

TAIR|locus:2042496 ERF15 "ethylene-responsive element binding factor 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 325 (119.5 bits), Expect = 4.3e-32, Sum P(2) = 4.3e-32
 Identities = 67/124 (54%), Positives = 86/124 (69%)

Query:    57 SEALVSSKRIKEEEVSSTTEENPT---KEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLG 113
             S  ++  + I+  +VS++ EE      +E+SYRGVR+RPWGKFAAEIRDSTR+GIRVWLG
Sbjct:    55 SPEMMIKEEIQNGDVSNSEEEEKVGIDEERSYRGVRKRPWGKFAAEIRDSTRNGIRVWLG 114

Query:   114 TFDSXXXXXXXXXXXXFSMRGSSAILNFPVERVQESLKDMK-CNTEEGCSPVVALKRKHS 172
             TFD             F+ +GS A LNFPVE V+ESLK M+  N  +G SPV+ALKRKHS
Sbjct:   115 TFDKAEEAALAYDQAAFATKGSLATLNFPVEVVRESLKKMENVNLHDGGSPVMALKRKHS 174

Query:   173 MRRK 176
             +R +
Sbjct:   175 LRNR 178

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0009507 "chloroplast" evidence=IDA

GO:0010200 "response to chitin" evidence=IEP

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

UNIPROTKB|Q5MFV1 BIERF3 "BTH-induced ERF transcriptional factor 3" [Oryza sativa Indica Group (taxid:39946)]

 Score = 213 (80.0 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
 Identities = 47/97 (48%), Positives = 59/97 (60%)

Query:    49 AEA-TP-EATSEALVSSKRIKEEEVSSTTEENPTKEKSYRGVRRRPWGKFAAEIRDSTRH 106
             +EA TP E TS     +  I+E E  +    +  + K YRGVR+RPWGKFAAEIRD  ++
Sbjct:   113 SEAGTPGEVTSTEATVTPGIREGEGEAVAVAS--RGKHYRGVRQRPWGKFAAEIRDPAKN 170

Query:   107 GIRVWLGTFDSXXXXXXXXXXXXFSMRGSSAILNFPV 143
             G RVWLGTFDS            + MRGS A+LNFP+
Sbjct:   171 GARVWLGTFDSAEEAAVAYDRAAYRMRGSRALLNFPL 207

GO:0009620 "response to fungus" evidence=IC

TAIR|locus:2171514 ERF2 "ethylene responsive element binding factor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
 Identities = 61/137 (44%), Positives = 75/137 (54%)

Query:    32 LPFNENDSEEMLLYGLIAEA----TPEATSEALVSSKRIKEEEVSSTT--EENP------ 79
             LP  ENDSE+ML+YGL+ +A    T  +    L     +K E   + T  EE P      
Sbjct:    48 LPLKENDSEDMLVYGLLKDAFHFDTSSSDLSCLFDFPAVKVEPTENFTAMEEKPKKAIPV 107

Query:    80 ----TKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXXFSMRGS 135
                  K K YRGVR+RPWGKFAAEIRD  ++G RVWLGTF++            F MRGS
Sbjct:   108 TETAVKAKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDIAAFRMRGS 167

Query:   136 SAILNFPVERVQESLKD 152
              A+LNFP+ RV     D
Sbjct:   168 RALLNFPL-RVNSGEPD 183

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA;TAS

GO:0005634 "nucleus" evidence=ISM;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP;IDA

GO:0009864 "induced systemic resistance, jasmonic acid mediated signaling pathway" evidence=IMP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2129116 ERF-1 "ethylene responsive element binding factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 52/126 (41%), Positives = 70/126 (55%)

Query:    28 YNNYLPFNENDSEEMLLYGLIAEATPEATSEALVSSKRIKEEEVSSTTEE-NPTKEKSYR 86
             +  + P + +  E+   +  +   TPE  S A V S  +K+E+ S  +      K K YR
Sbjct:    92 HGGWEPSSSSSDEDRSSFPSVKIETPE--SFAAVDSVPVKKEKTSPVSAAVTAAKGKHYR 149

Query:    87 GVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXXFSMRGSSAILNFPVERV 146
             GVR+RPWGKFAAEIRD  ++G RVWLGTF++            F MRGS A+LNFP+ RV
Sbjct:   150 GVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL-RV 208

Query:   147 QESLKD 152
                  D
Sbjct:   209 NSGEPD 214

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0005643 "nuclear pore" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2124504 AT4G18450 [Arabidopsis thaliana (taxid:3702)]

 Score = 203 (76.5 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
 Identities = 49/126 (38%), Positives = 69/126 (54%)

Query:    32 LPFNENDSEEMLLYGLIAEATPEATSEALVSSKRIKEEEVSSTTEENPTKEKSYRGVRRR 91
             L  +  D E   +   IA + P  T+   +++  I    +SS       K + YRGVR+R
Sbjct:    61 LDMSTEDQEWTEILDAIA-SFPNKTNHDPLTNPTIDSCSLSSRVS---CKTRKYRGVRKR 116

Query:    92 PWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXXFSMRGSS-AILNFPVERVQESL 150
             PWGKFAAEIRDSTR+G+RVWLGTF +              +RG+  A  NF +E V +++
Sbjct:   117 PWGKFAAEIRDSTRNGVRVWLGTFQTAEEAAMAYDKAAVRIRGTQKAHTNFQLETVIKAM 176

Query:   151 KDMKCN 156
              +M CN
Sbjct:   177 -EMDCN 181

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0010200 "response to chitin" evidence=IEP

GO:0006457 "protein folding" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=TAS

TAIR|locus:2171529 ERF5 "ethylene responsive element binding factor 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
 Identities = 59/157 (37%), Positives = 82/157 (52%)

Query:    30 NYLPFNENDSE-EMLLYGLIAE-----ATPEATSEALVSSKRIKEEEVSSTTEENPTKEK 83
             ++ P N+N ++ E  L   I +     + P  T     +++  K E     +EE   ++K
Sbjct:    98 DFKPSNQNQNQFEPELKSQIRKPPLKISLPAKTEWIQFAAENTKPEVTKPVSEE---EKK 154

Query:    84 SYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXXFSMRGSSAILNFPV 143
              YRGVR+RPWGKFAAEIRD  + G RVWLGTFD+            F +RGS AILNFP+
Sbjct:   155 HYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAARAYDEAAFRLRGSKAILNFPL 214

Query:   144 E------RVQESLKDMKCNTEEGCSPVV-ALKRKHSM 173
             E      R  E  K  K + +E  + V   LK + S+
Sbjct:   215 EVGKWKPRADEGEKKRKRDDDEKVTVVEKVLKTEQSV 251

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0009409 "response to cold" evidence=IEP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2086203 ESE1 "ethylene and salt inducible 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
 Identities = 43/77 (55%), Positives = 49/77 (63%)

Query:    76 EENPTKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXXFSMRGS 135
             E   T E  YRGVR+RPWGK+AAEIRDS RHG RVWLGTF++            F MRG 
Sbjct:     5 ESYNTNEMKYRGVRKRPWGKYAAEIRDSARHGARVWLGTFNTAEDAARAYDRAAFGMRGQ 64

Query:   136 SAILNFPVERVQESLKD 152
              AILNFP E   + +KD
Sbjct:    65 RAILNFPHE--YQMMKD 79

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009873 "ethylene mediated signaling pathway" evidence=TAS

TAIR|locus:2176187 AT5G51190 [Arabidopsis thaliana (taxid:3702)]

 Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 43/80 (53%), Positives = 53/80 (66%)

Query:    76 EENPTKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXXFSMRGS 135
             +EN   ++ YRGVRRRPWGK+AAEIRD  + G+RVWLGTFD+            F +RGS
Sbjct:    65 QEND--QRHYRGVRRRPWGKYAAEIRDPNKKGVRVWLGTFDTAMEAARGYDKAAFKLRGS 122

Query:   136 SAILNFPVERVQ-ESLKDMK 154
              AILNFP+E  + E L D K
Sbjct:   123 KAILNFPLEAGKHEDLGDNK 142

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8LDC8	ERF92_ARATH	No assigned EC number	0.6017	0.9330	0.9587	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: ERF33 AP2/ERF domain-containing transcription factor (221 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	224
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	2e-31
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	2e-28
pfam00847	53	pfam00847, AP2, AP2 domain	2e-12

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score =  109 bits (275), Expect = 2e-31
 Identities = 42/65 (64%), Positives = 48/65 (73%), Gaps = 1/65 (1%)

Query: 84  SYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGSSAILNFPV 143
            YRGVR+RPWGK+ AEIRD ++ G RVWLGTFD+AE AA AYD+AAF  RG SA LNFP 
Sbjct: 1   KYRGVRQRPWGKWVAEIRDPSK-GKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPN 59

Query: 144 ERVQE 148
                
Sbjct: 60  SLYDS 64

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score =  101 bits (254), Expect = 2e-28
 Identities = 41/61 (67%), Positives = 49/61 (80%), Gaps = 1/61 (1%)

Query: 83  KSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGSSAILNFP 142
             YRGVR+RPWGK+ AEIRD +  G R+WLGTFD+AE AA AYD+AA  +RGSSA+LNFP
Sbjct: 1   SKYRGVRQRPWGKWVAEIRDPSG-GRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFP 59

Query: 143 V 143
            
Sbjct: 60  D 60

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 60.0 bits (146), Expect = 2e-12
 Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 85  YRGVRRRP-WGKFAAEIRD-STRHGIRVWLGTFDSAEAAALAYDQAAFSMRG 134
           Y+GVR    WG++ AEIRD   +   R  LGTF + EAA  A   A   +RG
Sbjct: 3   YKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGTEEAAR-AAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	224
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.85
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.85
PHA00280	121	putative NHN endonuclease	99.46
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.27
PF14657	46	Integrase_AP2: AP2-like DNA-binding integrase doma	83.41

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.85  E-value=1.3e-21  Score=140.31  Aligned_cols=63  Identities=67%  Similarity=1.129  Sum_probs=59.2

Q ss_pred             ceeEeEeCCCCcEEEEEeeCCCCCeEEeecCCCcHHHHHHHHHHHHHhccCCCCCCCCChhhHH
Q 039409           84 SYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGSSAILNFPVERVQ  147 (224)
Q Consensus        84 ~yRGVr~r~~GKW~A~I~~~~~~Gkrv~LGtFdT~EeAArAYD~AA~~~~G~~A~lNFP~~~y~  147 (224)
                      +|+||+++++|||.|+|+++. +|+++|||+|+|+||||.|||.|+++++|..+.+|||.++|+
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~-~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~   63 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPS-KGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD   63 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecC-CCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence            599999999999999999964 489999999999999999999999999999999999999885

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.85  E-value=1.7e-21  Score=137.87  Aligned_cols=60  Identities=68%  Similarity=1.202  Sum_probs=56.6

Q ss_pred             CceeEeEeCCCCcEEEEEeeCCCCCeEEeecCCCcHHHHHHHHHHHHHhccCCCCCCCCCh
Q 039409           83 KSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGSSAILNFPV  143 (224)
Q Consensus        83 S~yRGVr~r~~GKW~A~I~~~~~~Gkrv~LGtFdT~EeAArAYD~AA~~~~G~~A~lNFP~  143 (224)
                      |+|+||+++++|||+|+|+++. .|+++|||+|+|+||||+|||.|+++++|..+.+|||.
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~-~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~   60 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPS-GGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPD   60 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCC-CCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCC
Confidence            6899999999999999999954 28999999999999999999999999999999999996

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>PHA00280 putative NHN endonuclease

Probab=99.46  E-value=1.1e-13  Score=112.19  Aligned_cols=59  Identities=14%  Similarity=0.178  Sum_probs=52.7

Q ss_pred             CCCCCCCCceeEeEeCC-CCcEEEEEeeCCCCCeEEeecCCCcHHHHHHHHHHHHHhccCCCCC
Q 039409           76 EENPTKEKSYRGVRRRP-WGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGSSAI  138 (224)
Q Consensus        76 ~~~~~~~S~yRGVr~r~-~GKW~A~I~~~~~~Gkrv~LGtFdT~EeAArAYD~AA~~~~G~~A~  138 (224)
                      ..++.++|+|+||++++ .|||+|+|+.   +|++++||.|+++|+|+.||+ ++.+++|.+|.
T Consensus        60 ~~~~~N~SG~kGV~~~k~~~kw~A~I~~---~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~  119 (121)
T PHA00280         60 KTPKSNTSGLKGLSWSKEREMWRGTVTA---EGKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR  119 (121)
T ss_pred             CCCCCCCCCCCeeEEecCCCeEEEEEEE---CCEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence            44667899999999877 5999999998   699999999999999999997 77889998874

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.27  E-value=1.1e-11  Score=85.59  Aligned_cols=53  Identities=30%  Similarity=0.427  Sum_probs=46.7

Q ss_pred             CceeEeEeCC-CCcEEEEEeeCCCCC--eEEeecCCCcHHHHHHHHHHHHHhccCC
Q 039409           83 KSYRGVRRRP-WGKFAAEIRDSTRHG--IRVWLGTFDSAEAAALAYDQAAFSMRGS  135 (224)
Q Consensus        83 S~yRGVr~r~-~GKW~A~I~~~~~~G--krv~LGtFdT~EeAArAYD~AA~~~~G~  135 (224)
                      |+|+||++++ .++|.|+|++...+|  +.++||.|++++||++||+.++..++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            6899999887 599999999954444  8999999999999999999999999874

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain

Probab=83.41  E-value=4.2  Score=27.11  Aligned_cols=38  Identities=13%  Similarity=0.098  Sum_probs=28.7

Q ss_pred             cEEEEEe--eC-CCCCeEEeecCCCcHHHHHHHHHHHHHhc
Q 039409           95 KFAAEIR--DS-TRHGIRVWLGTFDSAEAAALAYDQAAFSM  132 (224)
Q Consensus        95 KW~A~I~--~~-~~~Gkrv~LGtFdT~EeAArAYD~AA~~~  132 (224)
                      +|...|.  ++ +.+-++++-+.|.|..||-.+...+...+
T Consensus         1 ~w~~~v~g~~~~~Gkrk~~~k~GF~TkkeA~~~~~~~~~~~   41 (46)
T PF14657_consen    1 TWYYRVYGYDDETGKRKQKTKRGFKTKKEAEKALAKIEAEL   41 (46)
T ss_pred             CEEEEEEEEECCCCCEEEEEcCCCCcHHHHHHHHHHHHHHH
Confidence            5888883  32 33336788999999999999988876655

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	224
2gcc_A	70	Solution Structure Of The Gcc-Box Binding Domain, N		2e-16
1gcc_A	63	Solution Nmr Structure Of The Complex Of Gcc-Box Bi		2e-15

>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, Minimized Mean Structure Length = 70

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 37/64 (57%), Positives = 44/64 (68%)
Query: 80  TKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXXFSMRGSSAIL 139
            K K YRGVR+RPWGKFAAEIRD  ++G RVWLGTF++            F MRGS A+L
Sbjct: 1   AKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALL 60
Query: 140 NFPV 143
           NFP+
Sbjct: 61  NFPL 64

>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding Domain Of Aterf1 And Gcc-Box Dna, Minimized Average Structure Length = 63

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/61 (59%), Positives = 43/61 (70%)
Query: 83  KSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSXXXXXXXXXXXXFSMRGSSAILNFP 142
           K YRGVR+RPWGKFAAEIRD  ++G RVWLGTF++            F MRGS A+LNFP
Sbjct: 1   KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60
Query: 143 V 143
           +
Sbjct: 61  L 61
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	224
1gcc_A	63	Ethylene responsive element binding factor 1; tran	1e-40

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score =  132 bits (334), Expect = 1e-40
 Identities = 46/62 (74%), Positives = 54/62 (87%)

Query: 83  KSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGSSAILNFP 142
           K YRGVR+RPWGKFAAEIRD  ++G RVWLGTF++AE AALAYD+AAF MRGS A+LNFP
Sbjct: 1   KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

Query: 143 VE 144
           + 
Sbjct: 61  LR 62

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	224
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.93
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	90.16

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.93  E-value=7e-27  Score=167.89  Aligned_cols=61  Identities=74%  Similarity=1.314  Sum_probs=58.5

Q ss_pred             ceeEeEeCCCCcEEEEEeeCCCCCeEEeecCCCcHHHHHHHHHHHHHhccCCCCCCCCChh
Q 039409           84 SYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGSSAILNFPVE  144 (224)
Q Consensus        84 ~yRGVr~r~~GKW~A~I~~~~~~Gkrv~LGtFdT~EeAArAYD~AA~~~~G~~A~lNFP~~  144 (224)
                      +||||++++||||+|+|+++.++|+++|||+|+|+||||+|||.|+++++|..|.||||.+
T Consensus         2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~   62 (63)
T 1gcc_A            2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence            6999999999999999999877799999999999999999999999999999999999974

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=90.16  E-value=0.17  Score=37.47  Aligned_cols=29  Identities=21%  Similarity=0.132  Sum_probs=22.9

Q ss_pred             CCCCceeEeEeCCC-CcEEEEEeeCCCCCeEEe
Q 039409           80 TKEKSYRGVRRRPW-GKFAAEIRDSTRHGIRVW  111 (224)
Q Consensus        80 ~~~S~yRGVr~r~~-GKW~A~I~~~~~~Gkrv~  111 (224)
                      ..+|+|.||++.+. +.|.|.-.+   +|++..
T Consensus         3 ~~~Sg~pGVsw~kR~~~WlA~W~e---~g~rrs   32 (77)
T 3igm_B            3 HMSSGYPGVSWNKRMCAWLAFFYD---GASRRS   32 (77)
T ss_dssp             -CCSSSTTEEEETTTTEEEEEEEE---TTEEEE
T ss_pred             CCCCCCCcEEeecCCceEEEEEec---CCeEee
Confidence            35799999999884 999999988   466543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	224
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	6e-33

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  111 bits (279), Expect = 6e-33
 Identities = 46/62 (74%), Positives = 54/62 (87%)

Query: 83  KSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGSSAILNFP 142
           K YRGVR+RPWGKFAAEIRD  ++G RVWLGTF++AE AALAYD+AAF MRGS A+LNFP
Sbjct: 1   KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

Query: 143 VE 144
           + 
Sbjct: 61  LR 62

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	224
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.94

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.94  E-value=1.3e-27  Score=170.70  Aligned_cols=61  Identities=74%  Similarity=1.314  Sum_probs=58.6

Q ss_pred             ceeEeEeCCCCcEEEEEeeCCCCCeEEeecCCCcHHHHHHHHHHHHHhccCCCCCCCCChh
Q 039409           84 SYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGSSAILNFPVE  144 (224)
Q Consensus        84 ~yRGVr~r~~GKW~A~I~~~~~~Gkrv~LGtFdT~EeAArAYD~AA~~~~G~~A~lNFP~~  144 (224)
                      +||||+++++|||.|+|+++..+++++|||+|+|+||||+|||+||++++|..|.+|||++
T Consensus         2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~   62 (63)
T d1gcca_           2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCcc
Confidence            5999999999999999999888899999999999999999999999999999999999975