Citrus Sinensis ID: 039425

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410---
Protein Sequence
MGSITILLHNLEGHSFAGILNKEKSNLLVDMSKNNVRPKDILHVLKKRNMHNATTIRAIYNARRKYKVREQAGHSQMQLLMSKLIEHKYIERHKSDVDTNCVEALFLAHPSAIESLQAFPRVLIMDCTYQTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALERLKSIMEENMLASVIVTDRELALMTVIQKHFPSATTFLCRWYISRNVLVNCKNLFEANEIWQTFISSWNLLILSASEEEFAQRLKGMETDFSKYLIALTYIRNVWLDKYKDKFVSAWTNSVMHFRNIKASLERSLTMVQHDFKLLIFKELRGFVATNALTMILDESRRVDSLGPDVFACGCIIRHTHGLPRAPEITEYKREEIEMIVKRFNDSDDLAKVQLLRKLKELANPASTFLLEPKVK
Secondary Structure (PSIPRED)
cccccccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccEEEEEEccccccccEEEEccHHHHHHHHHcccEEEEEcccccccccccccEEccccccccEEEEEEEEEcccccHHHHHHHHHHHHHHccccccEEEEccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEccccccccHHHHHHHHHcccccHHccccccccccEEEEEHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHcccHcHcccccHHHHHHHHHHHHccccHHHHHHHHHcccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccEEEEEEccccccEEEEEEEcccHHHHHHHcccEEEEEccEcccccccccEEEEEEcccccEEEEEEHEHccccHHHHHHHHHHHHHHHccccccEEEEEccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHcccccccccEEEHHHHHHHHHHHHHccHHHHHHHHHHccccccHEEEEEEEcccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccccEccccc
Coil and Loop (DISEMBL)
MGSITILLHnleghsfagILNKEKSNLLVdmsknnvrpkdILHVLKKRNMHNATTIRAIYNARRKYKVREQAGHSQMQLLMSKLIEHKYIErhksdvdtNCVEALFLAHPSAIESLQAFPRVLIMDCtyqtnrydmplleiagvtsidLTFSVCCVYLKLKWENNYIWALERLKSIMEENMLASVIVTDRELALMTVIQKHFPSATTFLCRWYISRNVLVNCKNLFEANEIWQTFISSWNLLILSASEEEFAQRLKGMETDFSKYLIALTYIRNVWLDKYKDKFVSAWTNSVMHFRNIKASLERSLTMVQHDFKLLIFKELRGFVATNALTMILdesrrvdslgpdvfacgciirhthglprapeiteYKREEIEMIVKRFNDSDDLAKVQLLRKLKElanpastfllepkvk
Flexible Loop (DISEMBL)
MGSITILLHNLEGHSFAGILNKEKSNLLVDMSKNNVRPKDILhvlkkrnmhnatTIRAIYNARRKYKVREQAGHSQMQLLMSKLIEHKYIERHKSDVDTNCVEALFLAHPSAIESLQAFPRVLIMDCTYQTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALERLKSIMEENMLASVIVTDRELALMTVIQKHFPSATTFLCRWYISRNVLVNCKNLFEANEIWQTFISSWNLLILSASEEEFAQRLKGMETDFSKYLIALTYIRNVWLDKYKDKFVSAWTNSVMHFRNIKASLERSLTMVQHDFKLLIFKELRGFVATNALTMILDESRRVDSLGPDVFACGCIIrhthglprapeiteYKREEIEMIVkrfndsddLAKVQLLRKLkelanpastfllepkvk
Low Complexity Region (SEG)
MGSITILLHNLEGHSFAGILNKEKSNLLVDMSKNNVRPKDILHVLKKRNMHNATTIRAIYNARRKYKVREQAGHSQMQLLMSKLIEHKYIERHKSDVDTNCVEALFLAHPSAIESLQAFPRVLIMDCTYQTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALERLKSIMEENMLASVIVTDRELALMTVIQKHFPSATTFLCRWYISRNVLVNCKNLFEANEIWQTFISSWNLLILSASEEEFAQRLKGMETDFSKYLIALTYIRNVWLDKYKDKFVSAWTNSVMHFRNIKASLERSLTMVQHDFKLLIFKELRGFVATNALTMILDESRRVDSLGPDVFACGCIIRHTHGLPRAPEITEYKREEIEMIVKRFNDSDDLAKVQLLRKLKELANPASTFLLEPKVK
Disordered region (IsUnstruct)
***ITILLHNLEGHSFAGILNKEKSNLLVDMSKNNVRPKDILHVLKKRNMHNATTIRAIYNARRKYKVREQAGHSQMQLLMSKLIEHKYIERHKSDVDTNCVEALFLAHPSAIESLQAFPRVLIMDCTYQTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALERLKSIMEENMLASVIVTDRELALMTVIQKHFPSATTFLCRWYISRNVLVNCKNLFEANEIWQTFISSWNLLILSASEEEFAQRLKGMETDFSKYLIALTYIRNVWLDKYKDKFVSAWTNSVMHFRNIKASLERSLTMVQHDFKLLIFKELRGFVATNALTMILDESRRVDSLGPDVFACGCIIRHTHGLPRAPEITEYKREEIEMIVKRFNDSDDLAKVQLLRKLKE***************
Disordered Region (DISOPRED)
**SITI*LHNLEGHSF***********LV*****NVR*KDILHVLKKRNMHNATTIRAIYNARRKYKV***AGHSQMQLLMSKLIEHKYIERHKSDVDTNCVEALFLAHPSAIESLQAFPRVLIMDCTYQTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALERLKSIMEENMLASVIVTDRELALMTVIQKHFPSATTFLCRWYISRNVLVNCKNLFEANEIWQTFISSWNLLILSASEEEFAQRLKGMETDFSKYLIALTYIRNVWLDKYKDKFVSAWTNSVMHFRNIKASLERSLTMVQHDFKLLIFKELRGFVATNALTMILDESRRVDSLGPDVFACGCIIRHTHGLPRAPEITEYKREEIEMIVKRFNDSDDLAKVQLLRKLKELANP****L******
Disordered Region (DISEMBL)
MGSITILLHNLEGHSFAGILNKEKSNLLVDMSKNNVRPKDILHVLKKRNMHNATTIRAIYNARRKYKVREQAGHSQMQLLMSKLIEHKYIERHKSDVDTNCVEALFLAHPSAIESLQAFPRVLIMDCTYQTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALERLKSIMEENMLASVIVTDRELALMTVIQKHFPSATTFLCRWYISRNVLVNCKNLFEANEIWQTFISSWNLLILSASEEEFAQRLKGMETDFSKYLIALTYIRNVWLDKYKDKFVSAWTNSVMHFRNIKASLERSLTMVQHDFKLLIFKELRGFVATNALTMILDESRRVDSLGPDVFACGCIIRHTHGLPRAPEITEYKREEIEMIVKRFNDSDDLAKVQLLRKLKELANPASTFLLEPKVK
Disordered Region (DISPRO)
**SITILLHNLEGHSFAGILNKEKSNLLVDMSKNNVRPKDILHVLKKRNMHNATTIRAIYNARRKYKVREQAGHSQMQLLMSKLIEHKYIERHKSDVDTNCVEALFLAHPSAIESLQAFPRVLIMDCTYQTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALERLKSIMEENMLASVIVTDRELALMTVIQKHFPSATTFLCRWYISRNVLVNCKNLFEANEIWQTFISSWNLLILSASEEEFAQRLKGMETDFSKYLIALTYIRNVWLDKYKDKFVSAWTNSVMHFRNIKASLERSLTMVQHDFKLLIFKELRGFVATNALTMILDESRRVDSLGPDVFACGCIIRHTHGLPRAPEITEYKREEIEMIVKRFNDSDDLAKVQLLRKLKELANPASTFLL*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSITILLHNLEGHSFAGILNKEKSNLLVDMSKNNVRPKDILHVLKKRNMHNATTIRAIYNARRKYKVREQAGHSQMQLLMSKLIEHKYIERHKSDVDTNCVEALFLAHPSAIESLQAFPRVLIMDCTYQTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALERLKSIMEENMLASVIVTDRELALMTVIQKHFPSATTFLCRWYISRNVLVNCKNLFEANEIWQTFISSWNLLILSASEEEFAQRLKGMETDFSKYLIALTYIRNVWLDKYKDKFVSAWTNSVMHFRNIKASLERSLTMVQHDFKLLIFKELRGFVATNALTMILDESRRVDSLGPDVFACGCIIRHTHGLPRAPEITEYKREEIEMIVKRFNDSDDLAKVQLLRKLKELANPASTFLLEPKVK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	413	2.2.26 [Sep-21-2011]
Q9SZL8	788	Protein FAR1-RELATED SEQU	yes	no	0.271	0.142	0.274	1e-07
Q9SY66	680	Protein FAR1-RELATED SEQU	no	no	0.271	0.164	0.247	0.0001
Q9LIE5	839	Protein FAR-RED ELONGATED	no	no	0.426	0.209	0.225	0.0006

>sp|Q9SZL8|FRS5_ARATH Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=FRS5 PE=2 SV=1

 Score = 58.2 bits (139), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 1/113 (0%)

Query: 102 VEALFLAHPSAIESLQAFPRVLIMDCTYQTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLK 161
           V  +F A P AI     F   +  D TY++NRY +P     GV          C ++  +
Sbjct: 279 VGNVFWADPKAIMDFTHFGDTVTFDTTYRSNRYRLPFAPFTGVNHHGQPILFGCAFIINE 338

Query: 162 WENNYIWALERLKSIMEENMLASVIVTDRELALMTVIQKHFPSATTFLCRWYI 214
            E +++W      + M  +   S I TD +  +   I   FP A    C+W+I
Sbjct: 339 TEASFVWLFNTWLAAMSAHPPVS-ITTDHDAVIRAAIMHVFPGARHRFCKWHI 390

Putative transcription activator involved in regulating light control of development.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SY66|FRS11_ARATH Protein FAR1-RELATED SEQUENCE 11 OS=Arabidopsis thaliana GN=FRS11 PE=2 SV=1

 Score = 48.5 bits (114), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 52/113 (46%), Gaps = 1/113 (0%)

Query: 102 VEALFLAHPSAIESLQAFPRVLIMDCTYQTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLK 161
           +E +  ++ S+I+S + F   ++ D T++ +  +MPL    GV +  +     CV L+ +
Sbjct: 257 LENIAWSYASSIQSYELFGDAVVFDTTHRLSAVEMPLGIWVGVNNYGVPCFFGCVLLRDE 316

Query: 162 WENNYIWALERLKSIMEENMLASVIVTDRELALMTVIQKHFPSATTFLCRWYI 214
              ++ WAL+     M        I+TD  + L   I    P+    LC W +
Sbjct: 317 NLRSWSWALQAFTGFM-NGKAPQTILTDHNMCLKEAIAGEMPATKHALCIWMV 368

Putative transcription activator involved in regulating light control of development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LIE5|FHY3_ARATH Protein FAR-RED ELONGATED HYPOCOTYL 3 OS=Arabidopsis thaliana GN=FHY3 PE=1 SV=1

 Score = 45.8 bits (107), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/191 (22%), Positives = 85/191 (44%), Gaps = 15/191 (7%)

Query: 98  DTNCVEALFLAHPSAIESLQAFPRVLIMDCTYQTNRYDMPLLEIAGVTSIDLTFSVCCVY 157
           D   V+ +F     +  +  +F  V+ +D TY  N+Y MPL    GV        + C  
Sbjct: 260 DDQRVKNVFWVDAKSRHNYGSFCDVVSLDTTYVRNKYKMPLAIFVGVNQHYQYMVLGCAL 319

Query: 158 LKLKWENNYIWALER-LKSIMEENMLASVIVTDRELALMTVIQKHFPSATTFLCRWYISR 216
           +  +    Y W +E  L++I        V++T+ ++ + +++ + FP+    L  W++  
Sbjct: 320 ISDESAATYSWLMETWLRAIG--GQAPKVLITELDVVMNSIVPEIFPNTRHCLFLWHVLM 377

Query: 217 NVLVNCKNLFEANEIWQTFISSWNLLIL-SASEEEFAQRLK------GMETDFSKYLIAL 269
            V    +NL +  +    F+  +   I  S  +E+FA++        G++ D  +++I+L
Sbjct: 378 KV---SENLGQVVKQHDNFMPKFEKCIYKSGKDEDFARKWYKNLARFGLKDD--QWMISL 432

Query: 270 TYIRNVWLDKY 280
              R  W   Y
Sbjct: 433 YEDRKKWAPTY 443

Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. When associated with PHYA, protects it from being recognized and degraded by the COP1/SPA complex.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	413
297744547	701	unnamed protein product [Vitis vinifera]	0.941	0.554	0.438	1e-105
147776975	773	hypothetical protein VITISV_001036 [Viti	0.830	0.443	0.436	1e-89
356499731	878	PREDICTED: uncharacterized protein LOC10	0.966	0.454	0.349	4e-74
356536595	877	PREDICTED: uncharacterized protein LOC10	0.966	0.454	0.345	6e-73
356529783	1403	PREDICTED: uncharacterized protein LOC10	0.944	0.277	0.352	7e-71
356536993	426	PREDICTED: protein FAR1-RELATED SEQUENCE	0.697	0.676	0.393	6e-56
356522881	592	PREDICTED: uncharacterized protein LOC10	0.714	0.498	0.387	1e-55
92893886	985	Ovarian tumour, otubain [Medicago trunca	0.973	0.408	0.283	8e-50
356554576	388	PREDICTED: protein FAR1-RELATED SEQUENCE	0.634	0.675	0.368	1e-47
124361025	1063	Ovarian tumour, otubain, putative [Medic	0.973	0.378	0.279	2e-47

>gi|297744547|emb|CBI37809.3| unnamed protein product [Vitis vinifera]

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 203/463 (43%), Positives = 279/463 (60%), Gaps = 74/463 (15%)

Query: 23  EKSNLLVDMSKNNVRPKDILHVLKKRNMHNATTIRAIYNARRKYKVREQAGHSQMQLLMS 82
           E+  +L+D+SK+ ++PK+IL+ LK+R+  N TTI+ IYNAR K+K+ E AG S MQ LM+
Sbjct: 2   EEIGILIDLSKSQMKPKEILNTLKERDGLNCTTIKGIYNARHKHKLNENAGGSLMQQLMN 61

Query: 83  KLIEHKYIERHKSDVDTNCVEALFLAHPSAIESLQAFPRVLIMDCTYQTNRYDMPLLEIA 142
           KL+E KYIE H++D   NCV  L  AHPS++E L+AFPRVLIMDCTY+TN+Y +PLLE+ 
Sbjct: 62  KLMEFKYIEWHRNDEHNNCVRDLMFAHPSSLELLRAFPRVLIMDCTYRTNKYQLPLLEVV 121

Query: 143 GVTSIDLTFSVCCVYLKLKWENNYIWALERLKSIMEENMLASVIVTDRELALMTVIQKHF 202
           GVTS + TFSV   YL  + E  + WALERL+S++++ ML  V++TDRE +LM  +QK F
Sbjct: 122 GVTSTEKTFSVAFAYLGSEREEAHTWALERLRSMIDDAMLPRVVMTDREPSLMNALQKVF 181

Query: 203 PSATTFLCRWYISRNVLVNCKNLFEANEIWQTFISSWNLLILSASEEEFAQRLKGMETDF 262
           P A+  LCRW+IS N+L NCK  FE+      FIS WN+++L+ +E+E+A RL  +E+ F
Sbjct: 182 PMASNLLCRWHISTNILANCKIFFESKSRLDAFISMWNIVVLAETEDEYANRLNQLESHF 241

Query: 263 SKYLIALTYIRNVWLDKYKDKFVSAWTNSVMHFRN------------------------- 297
            +Y+ A+ Y +  WL  YK+KFV+ WTN VMHF N                         
Sbjct: 242 HRYIQAINYCKEQWLLPYKEKFVAVWTNKVMHFGNTTVNRAESTRAKLKRQLGLSRGDIE 301

Query: 298 ----------------IKASLERSLTMVQHDFKLLIFKELRGFVATNALTMILDESRRVD 341
                           IK S E SLT VQH+FK  ++ E+RG V+ +AL +++DE+ R +
Sbjct: 302 SSWPKIHSLLELQHIDIKTSFEISLTNVQHNFKDPLYGEVRGSVSKSALCILVDEANRSE 361

Query: 342 SLGPDVFACGCIIRHTHGLPRAPEITEYK------------------------------- 370
           S+G D  ACGC+   THGLP A EI+ YK                               
Sbjct: 362 SIGVDASACGCVYSRTHGLPCAHEISSYKIRGQPIPLACVDPHWRKLDLVSVSGKKVQDV 421

Query: 371 --REEIEMIVKRFNDSDDLAKVQLLRKLKELANPASTFLLEPK 411
                +E+  KRF D+DD+ K QL+ KL EL N  ST L+ PK
Sbjct: 422 SFTTAMELFYKRFMDADDIGKQQLVMKLMELVNSTSTSLVAPK 464

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147776975|emb|CAN70078.1| hypothetical protein VITISV_001036 [Vitis vinifera]

 Score =  336 bits (861), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 176/403 (43%), Positives = 242/403 (60%), Gaps = 60/403 (14%)

Query: 9   HNLEGHSFAGILNKEKSNLLVDMSKNNVRPKDILHVLKKRNMHNATTIRAIYNARRKYKV 68
            ++EGHSFAG L+ E+  +L+D+SK+ ++PK+IL+ LK+R+  N TTI+ IYNAR K+K 
Sbjct: 118 QHVEGHSFAGRLSMEEIGILIDLSKSQMKPKEILNTLKERDGLNCTTIKGIYNARHKHKA 177

Query: 69  REQAGHSQMQLLMSKLIEHKYIERHKSDVDTNCVEALFLAHPSAIESLQAFPRVLIMDCT 128
            E AG S MQ LM+KL+E KYIE H++D   NCV  L  AHPS++E L+AFPRV+     
Sbjct: 178 NENAGGSLMQQLMNKLMEFKYIEWHRNDEHNNCVRDLMFAHPSSLELLRAFPRVV----- 232

Query: 129 YQTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALERLKSIMEENMLASVIVT 188
                         GVTS + TFSV   YL  + E    WALERL+S ++  ML  V++T
Sbjct: 233 --------------GVTSTEKTFSVAFAYLGSEREEAXTWALERLRSXIDXAMLPRVVMT 278

Query: 189 DRELALMTVIQKHFPSATTFLCRWYISRNVLVNCKNLFEANEIWQTFISSWNLLILSASE 248
           DRE +LM  +QK FP A+  LCRW+IS N+L NCK  FE+      FIS WNJ++L+ + 
Sbjct: 279 DREPSLMNALQKVFPMASNLLCRWHISTNILANCKIFFESKSRLDAFISMWNJVVLAETX 338

Query: 249 EEFAQRLKGMETDFSKYLIALTYIRNVWLDKYKDKFVSAWTNSVMHFRN----------- 297
           +E+A RL  +E+ F +Y+ A+ Y +  WL  YK+KFV+ WTN VMHF N           
Sbjct: 339 DEYANRLNQLESHFHRYIQAINYCKEQWLLPYKEKFVAVWTNKVMHFGNTTVNRAESTRA 398

Query: 298 ------------------------------IKASLERSLTMVQHDFKLLIFKELRGFVAT 327
                                         IK S E SLT VQH+FK  ++ E+RG V+ 
Sbjct: 399 KLKRQLGLSXGDIESSWPKIHSLLELQHXDIKTSFEISLTNVQHNFKDPLYGEVRGSVSK 458

Query: 328 NALTMILDESRRVDSLGPDVFACGCIIRHTHGLPRAPEITEYK 370
           +AL +++DE+ R +S+G D  ACGC+   THGLP A EI+ YK
Sbjct: 459 SALCILVDEANRSESIGVDASACGCVYSRTHGLPCAHEISSYK 501

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499731|ref|XP_003518690.1| PREDICTED: uncharacterized protein LOC100805365 [Glycine max]

 Score =  285 bits (728), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 169/483 (34%), Positives = 262/483 (54%), Gaps = 84/483 (17%)

Query: 9   HNLE----GHSFAGILNKEKSNLLVDMSKNNVRPKDILHVLKKRNMHNATTIRAIYNARR 64
           H+LE    GH +AG L+ E+ +L+  ++K+ ++PKDIL  LK  NM N TTI+ IYNAR+
Sbjct: 140 HDLEETLVGHPYAGRLSAEEKSLVDALTKSMMKPKDILLTLKDHNMGNVTTIKQIYNARQ 199

Query: 65  KYKVREQAGHSQMQLLMSKLIEH-KYIERHKSDVDTNCVEALFLAHPSAIESLQAFPRVL 123
            Y+  ++   S+MQ L+ KL+EH +Y+  H+   D++ +  +F  HP AI+ L AF  VL
Sbjct: 200 AYRSSKKG--SEMQHLL-KLLEHDRYVYWHRKVDDSDAIRDIFWTHPDAIKLLGAFNTVL 256

Query: 124 IMDCTYQTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALERLKS-IMEENML 182
           I+D TY+T RY +PLLEI GVTS +LTFSV   +++ +  +N+ WAL++L+  I++E+ +
Sbjct: 257 IIDSTYKTTRYQLPLLEIVGVTSTELTFSVAFAFVESERADNFTWALQKLRGLIVKEDDM 316

Query: 183 ASVIVTDRELALMTVIQKHFPSATTFLCRWYISRNVLVNCKNLFEANEIWQTFISSWNLL 242
             VIVT  ++ALM+ +Q  FPS++  LCR++I++NV   CK++  + E     + +W+++
Sbjct: 317 PQVIVTVGDIALMSAVQVVFPSSSNLLCRFHINQNVKAKCKSIVHSKEKQDMVMDAWDVI 376

Query: 243 ILSASEEEFAQRLKGMETDFSKYLIALTYIRNVWLDKYKDKFVSAWTNSVMHFRN----- 297
           + S +E E+ QRL   E     + I   Y++N WL  +K+KFV+AWTN VMH  N     
Sbjct: 377 VNSPNEGEYMQRLAFFENVCLDFPIFGDYVKNTWLIPHKEKFVTAWTNRVMHLGNTATNR 436

Query: 298 ------------------------------------IKASLERSLTMVQHDFKLLIFKEL 321
                                               I+AS E+S  +V+H      + +L
Sbjct: 437 VEATHWRLKTLLQDSKEDMCSYWDAMKNMITLQHTEIEASFEKSKNVVEHRHNTPFYVKL 496

Query: 322 RGFVATNALTMILDESRRVDSLGPDVFACGCIIRHTHGLPRAPEITEYK----------- 370
            GFV+ +AL+ I +E  RV + G D   CGCI+R THGLP A E+  Y            
Sbjct: 497 VGFVSRSALSHITEEYDRVKTAGIDSSICGCIVRTTHGLPCACELARYSTMCHPIPLEAI 556

Query: 371 -----------------------REEIEMIVKRFNDSDDLAKVQLLRKLKELANPASTFL 407
                                  + E++ + KRF + D   K+ L+ KL E+A P +   
Sbjct: 557 HAHWRKLKFSDHGTNDNGSELSLQPEVDALYKRFQELDYAGKIILMAKLHEMAFPDTALK 616

Query: 408 LEP 410
             P
Sbjct: 617 CLP 619

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536595|ref|XP_003536822.1| PREDICTED: uncharacterized protein LOC100800409 [Glycine max]

 Score =  280 bits (717), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 167/483 (34%), Positives = 258/483 (53%), Gaps = 84/483 (17%)

Query: 9   HNLE----GHSFAGILNKEKSNLLVDMSKNNVRPKDILHVLKKRNMHNATTIRAIYNARR 64
           H+LE    GH +AG L+ E+ +L+  ++K+ ++PKDIL  LK  NM N TTI+ IYNAR+
Sbjct: 137 HDLEETLVGHPYAGRLSAEEKSLVDALTKSMMKPKDILLTLKDHNMGNVTTIKQIYNARQ 196

Query: 65  KYKVREQAGHSQMQLLMSKLIEH-KYIERHKSDVDTNCVEALFLAHPSAIESLQAFPRVL 123
            Y+  ++   S+MQ L+ KL+EH +Y+  H+   D++ +  +F  HP AI+ L AF  VL
Sbjct: 197 AYRSSKKG--SEMQHLL-KLLEHDRYVYWHRKVDDSDAIRDIFWTHPDAIKLLGAFNTVL 253

Query: 124 IMDCTYQTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALERLKS-IMEENML 182
           ++D TY+T RY +PLLEI GVTS +LTFS    +++ +   N+ WAL++L+  I +++ +
Sbjct: 254 VIDSTYKTTRYQLPLLEIVGVTSTELTFSAAFAFVESERAENFTWALKKLRGLIAKDDDM 313

Query: 183 ASVIVTDRELALMTVIQKHFPSATTFLCRWYISRNVLVNCKNLFEANEIWQTFISSWNLL 242
             VIVT  ++ALM+ +Q  FPS++  LCR++I++NV   CK++    E  +  + +W+++
Sbjct: 314 PQVIVTVGDIALMSAVQVVFPSSSNLLCRFHINQNVKAKCKSIVHLKEKQELMMDAWDVV 373

Query: 243 ILSASEEEFAQRLKGMETDFSKYLIALTYIRNVWLDKYKDKFVSAWTNSVMHFRN----- 297
           + S +E E+ QRL   E     + I   Y++N WL  +K+KFV+AWTN VMH  N     
Sbjct: 374 VNSPNEGEYMQRLAFFENVCLDFPILCDYVKNTWLIPHKEKFVTAWTNQVMHLGNTATNR 433

Query: 298 ------------------------------------IKASLERSLTMVQHDFKLLIFKEL 321
                                               I+AS E+S+ +V+H      + +L
Sbjct: 434 VEATHWRLKTLLQDSKEDMCSYWDAMKNIITLQHKEIEASFEKSINVVEHRHNTPFYIKL 493

Query: 322 RGFVATNALTMILDESRRVDSLGPDVFACGCIIRHTHGLPRAPEITEYK----------- 370
            GFV+ +AL+ I+DE  RV + G D   CGCI+R THGLP A E+  Y            
Sbjct: 494 VGFVSRSALSHIIDEYDRVKTAGIDSSICGCIVRTTHGLPCACELARYNTMCHPIPLEAI 553

Query: 371 -----------------------REEIEMIVKRFNDSDDLAKVQLLRKLKELANPASTFL 407
                                  + EI  +  RF + D   K+ L+ KL E+A P     
Sbjct: 554 HVHWRKLKFSDHVSNDEGTELSLQPEIGALYNRFQELDYAGKIILMAKLHEIAFPVKISK 613

Query: 408 LEP 410
             P
Sbjct: 614 CPP 616

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529783|ref|XP_003533467.1| PREDICTED: uncharacterized protein LOC100782358 [Glycine max]

 Score =  274 bits (700), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 167/474 (35%), Positives = 256/474 (54%), Gaps = 84/474 (17%)

Query: 13   GHSFAGILNKEKSNLLVDMSKNNVRPKDILHVLKKRNMHNATTIRAIYNARRKYKVREQA 72
            GHS+AG L  E+ +L++DM+K  V P++IL  LK  N  N TTIR IYNAR+ Y+  ++ 
Sbjct: 913  GHSYAGRLTAEEKSLVIDMTKKMVEPRNILLTLKDHN--NDTTIRHIYNARQAYRSSQKG 970

Query: 73   GHSQMQLLMSKLIEH-KYIERHKSDVDTNCVEALFLAHPSAIESLQAFPRVLIMDCTYQT 131
              ++MQ L+ KL+EH +Y+   +   D++ +  +F AHP AI+ L +F  VL +D TY+ 
Sbjct: 971  PRTEMQHLL-KLLEHDQYVCWSRKVDDSDAIRDIFWAHPDAIKLLGSFHTVLFLDNTYKV 1029

Query: 132  NRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALERLKS-IMEENMLASVIVTDR 190
            NRY +PLLEI GVTS +LTFSV   Y++    +N+ WAL++L+  I+++N +  VI+T R
Sbjct: 1030 NRYQLPLLEIVGVTSTELTFSVAFAYMESDEVDNFTWALQKLRELIVKDNEMPPVIITVR 1089

Query: 191  ELALMTVIQKHFPSATTFLCRWYISRNVLVNCKNLFEANEIWQTFISSWNLLILSASEEE 250
            ++ALM  +Q  FPS++  LCR++IS+NV   CK +    E +   + +W+ ++ S +E E
Sbjct: 1090 DIALMDAVQVVFPSSSNLLCRFHISKNVKAKCKLIVHPKERYDLVMDAWDSVMNSPNEGE 1149

Query: 251  FAQRLKGMETDFSKYLIALTYIRNVWLDKYKDKFVSAWTNSVMHFRN------------- 297
            + QRL  +E   S +     Y++N WL  +K+KFV AW + VMH  N             
Sbjct: 1150 YMQRLTLLEKVCSDFPTFGDYVKNTWLIPHKEKFVMAWVDRVMHLGNTTIDRFETAHWRL 1209

Query: 298  ----------------------------IKASLERSLTMVQHDFKLLIFKELRGFVATNA 329
                                        IK S E+S+ +V+++     + +LRGFV+ NA
Sbjct: 1210 ENLLQDSGGDMCSCWDAVNNMIKLQHTQIKVSFEKSINIVEYNDPF--YSKLRGFVSRNA 1267

Query: 330  LTMILDESRRVDSLGPDVFA--CGCIIRHTHGLPRAPEITEYKR---------------- 371
            L+ I D   RV ++G D+    CGC IR THGLP A E+ +Y R                
Sbjct: 1268 LSYIADHYDRVKTVGIDIDGSLCGCTIRTTHGLPCACELAKYSRTWHPIPLQAIHVHWRT 1327

Query: 372  ----------EEIEMIVKR--------FNDSDDLAKVQLLRKLKELANPASTFL 407
                      E +E+ ++R        F + D   K+ L  KL+ELA P +  +
Sbjct: 1328 LNFSDQEMNNEGLELALQREVDALHNQFQELDYAGKITLKAKLRELAFPDAILM 1381

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536993|ref|XP_003537016.1| PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Glycine max]

 Score =  224 bits (571), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 114/290 (39%), Positives = 172/290 (59%), Gaps = 2/290 (0%)

Query: 7   LLHNLEGHSFAGILNKEKSNLLVDMSKNNVRPKDILHVLKKRNMHNATTIRAIYNARRKY 66
           L   L GH +AG L +++ N++ DM+K+NV+P++IL  LKK N ++ TTI+ IYNAR  Y
Sbjct: 130 LAKTLVGHPYAGRLTEDEKNIIADMTKSNVKPRNILLTLKKYNSNSCTTIKQIYNARSAY 189

Query: 67  KVREQAGHSQMQLLMSKLIEHKYIERHKSDVDTNCVEALFLAHPSAIESLQAFPRVLIMD 126
           +   +   ++M+ LM  L   +YI  H+   D + V  LF  HP A++   A   V ++D
Sbjct: 190 RSSIRGDDTKMKHLMRLLERDQYIHWHRLK-DQDVVRDLFWCHPDAVKLCNACHLVFLID 248

Query: 127 CTYQTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALERLKSI-MEENMLASV 185
            TY+TNRY  P L+  GVT   + FS    YL+ +  NN +WALER + + +  + L  V
Sbjct: 249 STYKTNRYKFPFLDFVGVTPTGMNFSAGFAYLEGECMNNLVWALERFRGLFLRNDHLHVV 308

Query: 186 IVTDRELALMTVIQKHFPSATTFLCRWYISRNVLVNCKNLFEANEIWQTFISSWNLLILS 245
           IVTDR+LALM V++  FP  T  LCR++I +NV   CK+L      W   + SW  L+  
Sbjct: 309 IVTDRDLALMNVVKVVFPECTNLLCRFHIDKNVKAKCKSLIGQKNAWDYVMDSWGNLVDC 368

Query: 246 ASEEEFAQRLKGMETDFSKYLIALTYIRNVWLDKYKDKFVSAWTNSVMHF 295
            SE+EF + L+  +   S + + + Y+   W+  +K+KF++AWTN VMH 
Sbjct: 369 PSEQEFPEHLQRFQVACSPWPMFVDYVCETWIVPHKEKFITAWTNKVMHL 418

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356522881|ref|XP_003530071.1| PREDICTED: uncharacterized protein LOC100787990 [Glycine max]

 Score =  223 bits (568), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 115/297 (38%), Positives = 175/297 (58%), Gaps = 2/297 (0%)

Query: 7   LLHNLEGHSFAGILNKEKSNLLVDMSKNNVRPKDILHVLKKRNMHNATTIRAIYNARRKY 66
           L   L G+ +AG L  +  N++VDM+K+NV+P++IL  LK+ N  + TTI+ IYNAR  Y
Sbjct: 73  LAKTLVGNPYAGRLTDDDKNIIVDMTKSNVKPRNILLTLKEHNSSSCTTIKQIYNARSAY 132

Query: 67  KVREQAGHSQMQLLMSKLIEHKYIERHKSDVDTNCVEALFLAHPSAIESLQAFPRVLIMD 126
           +   +   S+MQ LM  L   +YI  H+   D + V  LF  HP A++   A   + ++D
Sbjct: 133 RSSIRGDDSEMQHLMRLLERDQYIHWHRLK-DEDVVRDLFWCHPDAVKLCNACHLIFLID 191

Query: 127 CTYQTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALERLKSI-MEENMLASV 185
            TY+TNRY + LL+I GVT I +TFS    YL+ +  NN +WALER + + +  + L  V
Sbjct: 192 STYKTNRYMLSLLDIVGVTPIGMTFSAGFAYLEGERVNNLVWALERFRGLFLRNDRLPLV 251

Query: 186 IVTDRELALMTVIQKHFPSATTFLCRWYISRNVLVNCKNLFEANEIWQTFISSWNLLILS 245
           IVTDR+LALM  ++  FP     LCR+++ +NV   C++L      W   + SW  L+  
Sbjct: 252 IVTDRDLALMNAVKVVFPECKNLLCRFHVDKNVKAKCESLVGQKNAWDYVMDSWGNLVDC 311

Query: 246 ASEEEFAQRLKGMETDFSKYLIALTYIRNVWLDKYKDKFVSAWTNSVMHFRNIKASL 302
            SE+EF + L+  +   S + + + Y+   W+  +K+KF++AWTN VMH    K+ L
Sbjct: 312 PSEQEFPEHLQRFQVACSPWPMFIDYVCETWIVPHKEKFITAWTNKVMHLVTFKSKL 368

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|92893886|gb|ABE91936.1| Ovarian tumour, otubain [Medicago truncatula]

 Score =  204 bits (518), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 139/491 (28%), Positives = 237/491 (48%), Gaps = 89/491 (18%)

Query: 11  LEGHSFAGILNKEKSNLLVDMSKNNVRPKDILHVLKKRNMHNATTIRAIYNARRKYKVRE 70
           LEGH  AG L ++   ++ D++K+ + P++IL  LK +  H  T ++ +YN R++     
Sbjct: 166 LEGHILAGRLKEDDKKIVRDLTKSKMLPRNILIHLKNQRPHCMTNVKQVYNERQQIWKAN 225

Query: 71  QAGHSQMQLLMSKLIEHKYIERHKSDVDTNCVEALFLAHPSAIESLQAFPRVLIMDCTYQ 130
           +     +Q L+SKL EH Y    ++ +++N +E +F AHP++I+    FP VL+MD TY+
Sbjct: 226 RGDKKPLQFLISKLEEHNYTYYSRTQLESNTIEDIFWAHPTSIKLFNNFPTVLVMDSTYK 285

Query: 131 TNRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALERLKSIMEENM-LASVIVTD 189
           TN Y MP+ E+ GVTS DLT+SV   ++  + E N++W L  L+ ++   M +  VIVTD
Sbjct: 286 TNMYRMPMFEVVGVTSTDLTYSVGFGFMTHEKEENFVWVLTMLRKLLSSKMNMHKVIVTD 345

Query: 190 RELALMTVIQKHFPSATTFLCRWYISRNV----LVNCKNLF---------EANEIWQTFI 236
           R+++LM  +   FP +    C +++  NV    ++NCK               ++ +  +
Sbjct: 346 RDMSLMKAVAHVFPESYALNCFFHVQANVKQRCVLNCKYPLGFKKDGKEVSNRDVVKKIM 405

Query: 237 SSWNLLILSASEEEFAQRLKGMETDFSKYLIALTYIRNVWLDKYKDKFVSAWTNSVMH-- 294
           ++W  ++ S +++ +A  L   +   S + I + Y     LD+ KDK V AWT+ V+H  
Sbjct: 406 NAWKAMVESPNQQLYANALVEFKDSCSDFPIFVDYAMTT-LDEVKDKIVRAWTDHVLHLG 464

Query: 295 ---------------------------------------FRNIKASLERSLTMVQHDFK- 314
                                                  F  I+ S  +++ +++H FK 
Sbjct: 465 CRTTNRVESAHALLKKYLDNSVGDLGTCWEKIHHMLLLQFTAIQTSFGQNVCVLEHRFKD 524

Query: 315 LLIFKELRGFVATNALTMI-LDESRRVDSLGPDVFACGCIIRHTHGLPRAPEIT------ 367
           + ++  L G V+ NAL  I L+E R  ++L  D   CGC+ R ++GLP A EI       
Sbjct: 525 VTLYSGLGGHVSRNALDNIALEEKRCRETLCMDNDICGCVQRTSYGLPCACEIATKLLQE 584

Query: 368 ------------------EYKRE-------EIEMIVKRFNDSDDLAKVQLLRKLKELANP 402
                             E   E       E++ IV+R        K+++   L++LA P
Sbjct: 585 KPILLDEIYHHWLRLSMGEQSNEDAFCVEVELKAIVERLKKLPFQMKLEVKEGLRQLAFP 644

Query: 403 ASTFLLEPKVK 413
            +T +  P  K
Sbjct: 645 ETTLMSPPPRK 655

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554576|ref|XP_003545621.1| PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Glycine max]

 Score =  196 bits (499), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 107/290 (36%), Positives = 158/290 (54%), Gaps = 28/290 (9%)

Query: 7   LLHNLEGHSFAGILNKEKSNLLVDMSKNNVRPKDILHVLKKRNMHNATTIRAIYNARRKY 66
           L   L GH +AG L  ++ N++ +M+K+NV+P++IL  LK+ N  + TTI+ IYNAR  Y
Sbjct: 118 LAKTLVGHPYAGRLTDDEKNIIANMTKSNVKPRNILLTLKEHNSSSCTTIKQIYNARSAY 177

Query: 67  KVREQAGHSQMQLLMSKLIEHKYIERHKSDVDTNCVEALFLAHPSAIESLQAFPRVLIMD 126
           +   +   ++MQ  M  L   +YI  H+   D + V  LF  HP A++   A   V ++D
Sbjct: 178 RSSIRGDDTEMQHPMRLLERDQYIHWHRLK-DEDVVRDLFWCHPDAVKLCNACHLVFLID 236

Query: 127 CTYQTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALERLKSI-MEENMLASV 185
            TY+TNRY +PLL+I GVT   +TFS    YL+ +  NN +WALER + + +  + L  V
Sbjct: 237 STYKTNRYRLPLLDIVGVTPTGMTFSAGFAYLEGERVNNLVWALERFRGLFLRNDRLPVV 296

Query: 186 IVTDRELALMTVIQKHFPSATTFLCRWYISRNVLVNCKNLFEANEIWQTFISSWNLLILS 245
           IVTDR+LALM  ++  FP  T  LC+++I +NV   CK+L      W   + +W  LI  
Sbjct: 297 IVTDRDLALMNAVKVVFPECTNLLCKFHIDKNVKAKCKSLIGQKNAWDYVMDNWGNLI-- 354

Query: 246 ASEEEFAQRLKGMETDFSKYLIALTYIRNVWLDKYKDKFVSAWTNSVMHF 295
                                    Y+   W+  +K+KF+ AWTN VMH 
Sbjct: 355 ------------------------DYVCETWIVPHKEKFILAWTNKVMHL 380

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|124361025|gb|ABN08997.1| Ovarian tumour, otubain, putative [Medicago truncatula]

 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 137/491 (27%), Positives = 237/491 (48%), Gaps = 89/491 (18%)

Query: 11  LEGHSFAGILNKEKSNLLVDMSKNNVRPKDILHVLKKRNMHNATTIRAIYNARRKYKVRE 70
           LEGH  AG L ++   ++ D++K+ + P++IL  LK +  H  T ++ +YN R++     
Sbjct: 244 LEGHILAGRLKEDDKKIVRDLTKSKMLPRNILIHLKNQIPHCMTNVKQVYNERQQIWKAN 303

Query: 71  QAGHSQMQLLMSKLIEHKYIERHKSDVDTNCVEALFLAHPSAIESLQAFPRVLIMDCTYQ 130
           +     +Q L+SKL EH Y    ++ +++N +E +F AHP++I+    FP VL+MD TY+
Sbjct: 304 RGDKKPLQFLISKLEEHNYTYYSRTQLESNTIEDIFWAHPTSIKLFNNFPTVLVMDSTYK 363

Query: 131 TNRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALERLKSIMEENM-LASVIVTD 189
           TN Y MP+ E+ GVTS DLT+SV   ++  + E N++W L  L+ ++   M +  VIVTD
Sbjct: 364 TNMYRMPMFEVVGVTSTDLTYSVGFGFMTHEKEENFVWVLTMLRKLLSSKMNMPKVIVTD 423

Query: 190 RELALMTVIQKHFPSATTFLCRWYISRNV----LVNCKNLF---------EANEIWQTFI 236
           R+++LM  +   FP +    C +++  NV    ++NCK               ++ +  +
Sbjct: 424 RDMSLMKAVAHVFPESYALNCFFHVQANVKQRCVLNCKYPLGFKKDGKEVSNRDVVKKIM 483

Query: 237 SSWNLLILSASEEEFAQRLKGMETDFSKYLIALTYIRNVWLDKYKDKFVSAWTNSVMH-- 294
           ++W  ++ S +++ +A  L   +   S + I + Y     LD+ KDK V AWT+ V+H  
Sbjct: 484 NAWKAMVESPNQQLYANALVEFKDSCSDFPIFVDYAMTT-LDEVKDKIVRAWTDHVLHLG 542

Query: 295 ---------------------------------------FRNIKASLERSLTMVQHDFK- 314
                                                     I+ S  +++ +++H FK 
Sbjct: 543 CRTTNRVESAHALLKKYLDNSVGDLGTCWEKIHHMLLLQLTAIQTSFGQNVCVLEHRFKD 602

Query: 315 LLIFKELRGFVATNALTMI-LDESRRVDSLGPDVFACGCIIRHTHGLPRAPEI-TEYKRE 372
           + ++  L G V+ NAL  I L+E R  ++L  D    GC+ R ++GLP A EI T+  +E
Sbjct: 603 VTLYSGLGGHVSRNALDNIALEEKRCRETLCMDNDIYGCVQRTSYGLPCACEIATKLLQE 662

Query: 373 ------------------------------EIEMIVKRFNDSDDLAKVQLLRKLKELANP 402
                                         E++ IV+R        K+++   L++LA P
Sbjct: 663 KPILLDEIYHHWLRLSMGEQSNKDAFCVEVELKAIVERLKKLPFQMKLEVKEGLRQLAFP 722

Query: 403 ASTFLLEPKVK 413
            +T +  P  K
Sbjct: 723 ETTLMSPPPRK 733

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	413
TAIR|locus:2121060	788	FRS5 "FAR1-related sequence 5"	0.426	0.223	0.247	2e-06
CGD|CAL0004344	568	orf19.4703 [Candida albicans (	0.418	0.304	0.221	5.8e-06
UNIPROTKB|Q5AME3	568	CaO19.4703 "Putative uncharact	0.418	0.304	0.221	5.8e-06
TAIR|locus:2012828	680	FRS11 "FAR1-related sequence 1	0.692	0.420	0.212	5.7e-05
TAIR|locus:2090394	839	FHY3 "far-red elongated hypoco	0.510	0.251	0.218	0.00012

TAIR|locus:2121060 FRS5 "FAR1-related sequence 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 143 (55.4 bits), Expect = 2.0e-06, P = 2.0e-06
 Identities = 46/186 (24%), Positives = 79/186 (42%)

Query:   105 LFLAHPSAIESLQAFPRVLIMDCTYQTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWEN 164
             +F A P AI     F   +  D TY++NRY +P     GV          C ++  + E 
Sbjct:   282 VFWADPKAIMDFTHFGDTVTFDTTYRSNRYRLPFAPFTGVNHHGQPILFGCAFIINETEA 341

Query:   165 NYIWALERLKSIMEENMLASVIVTDRELALMTVIQKHFPSATTFLCRWYISRNVLVNCKN 224
             +++W      + M  +   S I TD +  +   I   FP A    C+W+I +       +
Sbjct:   342 SFVWLFNTWLAAMSAHPPVS-ITTDHDAVIRAAIMHVFPGARHRFCKWHILKKCQEKLSH 400

Query:   225 LFEANEIWQTFISSWNLLI-LSASEEEFAQ----RLKGMETDFSKYLIALTYIRNVWLDK 279
             +F  +    +F S ++  + L+ S E+F +     L   E    ++L A+   R  W+  
Sbjct:   401 VFLKHP---SFESDFHKCVNLTESVEDFERCWFSLLDKYELRDHEWLQAIYSDRRQWVPV 457

Query:   280 Y-KDKF 284
             Y +D F
Sbjct:   458 YLRDTF 463

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009639 "response to red or far red light" evidence=ISS

CGD|CAL0004344 orf19.4703 [Candida albicans (taxid:5476)]

 Score = 137 (53.3 bits), Expect = 5.8e-06, P = 5.8e-06
 Identities = 41/185 (22%), Positives = 82/185 (44%)

Query:   154 CCVYLK--LKWENNYIWALERLKSIMEENMLASVIVTDRELALMTVIQKHFPSATTFLCR 211
             C  ++   LK E+  I  LE LKS    ++    ++ D  ++ ++ I+  FP ++  +C+
Sbjct:    79 CAFFITNTLK-EDPIISFLEFLKS---HSVTPKQVMIDCSMSELSAIKTVFPESSVSICK 134

Query:   212 WYISRNVLVNCKNLFEANEIWQTFISSWNLLILSASEEEFAQRLKGMETDFSKYLIALTY 271
             W+I RNV    +++F   E     ++    L  +++++E AQ++   +  F  Y   L Y
Sbjct:   135 WHILRNVRTEARSIFNDKESQDYAVAKITALFDNSTKDEIAQKIHEFKEQFKDYPKWLNY 194

Query:   272 IRNVWLDKYKDKFVSAWTNSVMHFRNIKASLERSLTMVQHDFKLLIFKELRGFVATNALT 331
                    KY +  + +W N+     N + S    +       K+   K +R     + L 
Sbjct:   195 F------KYCENLLRSWMNNAKVSLNQENSTNNCIESYHRTIKIKFIKSIRKHTPDDLLC 248

Query:   332 MILDE 336
             ++  E
Sbjct:   249 VLYKE 253

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5AME3 CaO19.4703 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 137 (53.3 bits), Expect = 5.8e-06, P = 5.8e-06
 Identities = 41/185 (22%), Positives = 82/185 (44%)

Query:   154 CCVYLK--LKWENNYIWALERLKSIMEENMLASVIVTDRELALMTVIQKHFPSATTFLCR 211
             C  ++   LK E+  I  LE LKS    ++    ++ D  ++ ++ I+  FP ++  +C+
Sbjct:    79 CAFFITNTLK-EDPIISFLEFLKS---HSVTPKQVMIDCSMSELSAIKTVFPESSVSICK 134

Query:   212 WYISRNVLVNCKNLFEANEIWQTFISSWNLLILSASEEEFAQRLKGMETDFSKYLIALTY 271
             W+I RNV    +++F   E     ++    L  +++++E AQ++   +  F  Y   L Y
Sbjct:   135 WHILRNVRTEARSIFNDKESQDYAVAKITALFDNSTKDEIAQKIHEFKEQFKDYPKWLNY 194

Query:   272 IRNVWLDKYKDKFVSAWTNSVMHFRNIKASLERSLTMVQHDFKLLIFKELRGFVATNALT 331
                    KY +  + +W N+     N + S    +       K+   K +R     + L 
Sbjct:   195 F------KYCENLLRSWMNNAKVSLNQENSTNNCIESYHRTIKIKFIKSIRKHTPDDLLC 248

Query:   332 MILDE 336
             ++  E
Sbjct:   249 VLYKE 253

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2012828 FRS11 "FAR1-related sequence 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 129 (50.5 bits), Expect = 5.7e-05, P = 5.7e-05
 Identities = 65/306 (21%), Positives = 132/306 (43%)

Query:    15 SFAGILNKEKSNLLVDMSKNNVRPKDILHVLKKRNMHNAT----TIRAIYNARRKYKVRE 70
             ++  I + +KS +L+  SK  +  + ++ +L+            T + + N  + +K  +
Sbjct:   165 AYRSISDADKSRILM-FSKTGISVQQMMRLLELEKCVEPGFLPFTEKDVRNLLQSFKKLD 223

Query:    71 QAGHSQMQLLMSKLIEHKYIE-RHKSDVDTNC-VEALFLAHPSAIESLQAFPRVLIMDCT 128
                 +   L M + I+ K    + +  +D N  +E +  ++ S+I+S + F   ++ D T
Sbjct:   224 PEDENIDFLRMCQSIKEKDPNFKFEFTLDANDKLENIAWSYASSIQSYELFGDAVVFDTT 283

Query:   129 YQTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALERLKSIMEENMLASVIVT 188
             ++ +  +MPL    GV +  +     CV L+ +   ++ WAL+     M        I+T
Sbjct:   284 HRLSAVEMPLGIWVGVNNYGVPCFFGCVLLRDENLRSWSWALQAFTGFMN-GKAPQTILT 342

Query:   189 DRELALMTVIQKHFPSATTFLCRWYISRNVLVNCKNLFEAN--EIWQTFISSWNLLILSA 246
             D  + L   I    P+    LC W     V+    + F A   E +  + + +  L    
Sbjct:   343 DHNMCLKEAIAGEMPATKHALCIWM----VVGKFPSWFNAGLGERYNDWKAEFYRLYHLE 398

Query:   247 SEEEFAQRLKGMETDF----SKYLIALTYIRNVWLDKY-KDKFVSAWTNSVMHFRNIKAS 301
             S EEF    + M   F    ++++  L   R++W   Y +  F++  T +    + I A 
Sbjct:   399 SVEEFELGWRDMVNSFGLHTNRHINNLYASRSLWSLPYLRSHFLAGMTLTGRS-KAINAF 457

Query:   302 LERSLT 307
             ++R L+
Sbjct:   458 IQRFLS 463

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009639 "response to red or far red light" evidence=ISS

TAIR|locus:2090394 FHY3 "far-red elongated hypocotyls 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 127 (49.8 bits), Expect = 0.00012, P = 0.00012
 Identities = 50/229 (21%), Positives = 101/229 (44%)

Query:    98 DTNCVEALFLAHPSAIESLQAFPRVLIMDCTYQTNRYDMPLLEIAGVTSIDLTFSVCCVY 157
             D   V+ +F     +  +  +F  V+ +D TY  N+Y MPL    GV        + C  
Sbjct:   260 DDQRVKNVFWVDAKSRHNYGSFCDVVSLDTTYVRNKYKMPLAIFVGVNQHYQYMVLGCAL 319

Query:   158 LKLKWENNYIWALER-LKSIMEENMLASVIVTDRELALMTVIQKHFPSATTFLCRWYISR 216
             +  +    Y W +E  L++I        V++T+ ++ + +++ + FP+    L  W++  
Sbjct:   320 ISDESAATYSWLMETWLRAI--GGQAPKVLITELDVVMNSIVPEIFPNTRHCLFLWHVLM 377

Query:   217 NVLVNCKNLFEANEIWQTFISSWNLLIL-SASEEEFAQR-LK-----GMETDFSKYLIAL 269
              V  N   + + ++    F+  +   I  S  +E+FA++  K     G++ D  +++I+L
Sbjct:   378 KVSENLGQVVKQHD---NFMPKFEKCIYKSGKDEDFARKWYKNLARFGLKDD--QWMISL 432

Query:   270 TYIRNVWLDKYKDKFVSAWTNSVMHFRNIKASLERSL---TMVQHDFKL 315
                R  W   Y    + A  ++     +I A  ++ +   T VQ   K+
Sbjct:   433 YEDRKKWAPTYMTDVLLAGMSTSQRADSINAFFDKYMHKKTSVQEFVKV 481


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.135   0.399    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      413       413   0.00080  118 3  11 22  0.47    33
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  624 (66 KB)
  Total size of DFA:  273 KB (2143 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  37.90u 0.15s 38.05t   Elapsed:  00:00:02
  Total cpu time:  37.90u 0.15s 38.05t   Elapsed:  00:00:02
  Start:  Sat May 11 01:26:43 2013   End:  Sat May 11 01:26:45 2013

GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009585 "red, far-red light phototransduction" evidence=IMP

GO:0007623 "circadian rhythm" evidence=IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0010017 "red or far-red light signaling pathway" evidence=IMP

GO:0010218 "response to far red light" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0042753 "positive regulation of circadian rhythm" evidence=IMP

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

GO:0006487 "protein N-linked glycosylation" evidence=RCA

GO:0008284 "positive regulation of cell proliferation" evidence=RCA

GO:0009630 "gravitropism" evidence=RCA

GO:0009639 "response to red or far red light" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	413
pfam10551	88	pfam10551, MULE, MULE transposase domain	2e-10
PLN03097	846	PLN03097, FHY3, Protein FAR-RED ELONGATED HYPOCOTY	1e-08

>gnl|CDD|220806 pfam10551, MULE, MULE transposase domain

 Score = 57.0 bits (138), Expect = 2e-10
 Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 5/93 (5%)

Query: 127 CTYQTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALERLKSIMEENMLASVI 186
            TY TN+Y        GV      F +    +  + E ++ W LE LK  +        I
Sbjct: 1   GTYLTNKY----KGAVGVDHHGQGFPLAFALVSDESEESWTWFLEGLKKALGGRP-PLTI 55

Query: 187 VTDRELALMTVIQKHFPSATTFLCRWYISRNVL 219
           ++D +  L   I++ FP+A   LC W+I RN+ 
Sbjct: 56  ISDGDKGLKKAIKEVFPNARHRLCLWHILRNLK 88

This domain was identified by Babu and colleagues. Length = 88

>gnl|CDD|178645 PLN03097, FHY3, Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional

 Score = 56.9 bits (137), Expect = 1e-08
 Identities = 49/197 (24%), Positives = 88/197 (44%), Gaps = 12/197 (6%)

Query: 102 VEALFLAHPSAIESLQAFPRVLIMDCTYQTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLK 161
           ++ LF     +      F  V+  D TY  N+Y MPL    GV        + C  +  +
Sbjct: 268 LKNLFWVDAKSRHDYGNFSDVVSFDTTYVRNKYKMPLALFVGVNQHYQFMLLGCALISDE 327

Query: 162 WENNYIWALER-LKSIMEENMLASVIVTDRELALMTVIQKHFPSATTFLCRWYISRNVLV 220
               Y W ++  L+++  +     VI+TD++ A+ +VI + FP+A      W+I   V  
Sbjct: 328 SAATYSWLMQTWLRAMGGQA--PKVIITDQDKAMKSVISEVFPNAHHCFFLWHILGKVSE 385

Query: 221 NCKNLFEANEIWQTFISSWNLLIL-SASEEEFAQR----LKGMETDFSKYLIALTYIRNV 275
           N   + + +E    F++ +   I  S +EEEF +R    L   E    +++ +L   R  
Sbjct: 386 NLGQVIKQHE---NFMAKFEKCIYRSWTEEEFGKRWWKILDRFELKEDEWMQSLYEDRKQ 442

Query: 276 WLDKY-KDKFVSAWTNS 291
           W+  Y +D F++  +  
Sbjct: 443 WVPTYMRDAFLAGMSTV 459

Length = 846

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	413
PLN03097	846	FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provis	100.0
PF00872	381	Transposase_mut: Transposase, Mutator family; Inte	99.9
PF10551	93	MULE: MULE transposase domain; InterPro: IPR018289	99.89
COG3328	379	Transposase and inactivated derivatives [DNA repli	99.63
smart00575	28	ZnF_PMZ plant mutator transposase zinc finger.	98.38
PF06782	470	UPF0236: Uncharacterised protein family (UPF0236);	98.06
PF04434	40	SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc f	97.44
PF01610	249	DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Aut	96.78
PF13610	140	DDE_Tnp_IS240: DDE domain	95.37
PF03050	271	DDE_Tnp_IS66: Transposase IS66 family ; InterPro:	94.93
PF13936	44	HTH_38: Helix-turn-helix domain; PDB: 2W48_A.	91.54
PF00665	120	rve: Integrase core domain; InterPro: IPR001584 In	89.44
PF08069	60	Ribosomal_S13_N: Ribosomal S13/S15 N-terminal doma	88.79
PF04937	153	DUF659: Protein of unknown function (DUF 659); Int	88.63
COG3316	215	Transposase and inactivated derivatives [DNA repli	87.16
PRK08561	151	rps15p 30S ribosomal protein S15P; Reviewed	84.11

>PLN03097 FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional

Probab=100.00  E-value=2.1e-51  Score=428.21  Aligned_cols=340  Identities=16%  Similarity=0.243  Sum_probs=274.6

Q ss_pred             ChHHHHHHHHhcCCC---CCcchhhHHHHHHHhhhhhhcCcHHHHHHHHHHh----hcCcEEEEeecCCCCceeeEEeeC
Q 039425           37 RPKDILHVLKKRNMH---NATTIRAIYNARRKYKVREQAGHSQMQLLMSKLI----EHKYIERHKSDVDTNCVEALFLAH  109 (413)
Q Consensus        37 ~~~~I~~~l~~~~~~---~~~t~~di~n~~~~~~~~~~~~~~~~~~l~~~l~----~~~~~~~~~~~~~~~~~~~l~~~~  109 (413)
                      .++.+...+.+..++   ...+..|..|...+.|+..++ ..+++++++.+.    ++|.|+|.+++|+++++++|||++
T Consensus       197 ~~r~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~r~~~~~-~gD~~~ll~yf~~~q~~nP~Ffy~~qlDe~~~l~niFWaD  275 (846)
T PLN03097        197 QTRKMYAAMARQFAEYKNVVGLKNDSKSSFDKGRNLGLE-AGDTKILLDFFTQMQNMNSNFFYAVDLGEDQRLKNLFWVD  275 (846)
T ss_pred             hhhhhHHHHHhhhhccccccccchhhcchhhHHHhhhcc-cchHHHHHHHHHHHHhhCCCceEEEEEccCCCeeeEEecc
Confidence            344555555444322   123445666665555554443 357788887775    689999999999999999999999


Q ss_pred             hhhHHHHhhCCCEEEeeccccccCCCCceeeEEEeeccCcEEEEEEEeecccccchHHHHHHHHHHHHhccccceEEEec
Q 039425          110 PSAIESLQAFPRVLIMDCTYQTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALERLKSIMEENMLASVIVTD  189 (413)
Q Consensus       110 ~~~~~~~~~~~~vl~iD~Ty~tn~~~~~l~~~~g~~~~g~~~~~~~~~~~~E~~~~~~~~l~~l~~~~~~~~~p~~iitD  189 (413)
                      +.++..|..|+|||.+|+||+||+|++||..++|+|++|+++++|+||+.+|+.++|.|+|+.|++.| +++.|.+||||
T Consensus       276 ~~sr~~Y~~FGDvV~fDTTY~tN~y~~Pfa~FvGvNhH~qtvlfGcaLl~dEt~eSf~WLf~tfl~aM-~gk~P~tIiTD  354 (846)
T PLN03097        276 AKSRHDYGNFSDVVSFDTTYVRNKYKMPLALFVGVNQHYQFMLLGCALISDESAATYSWLMQTWLRAM-GGQAPKVIITD  354 (846)
T ss_pred             HHHHHHHHhcCCEEEEeceeeccccCcEEEEEEEecCCCCeEEEEEEEcccCchhhHHHHHHHHHHHh-CCCCCceEEec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999 67999999999


Q ss_pred             cchHHHHHHHHhCCccccccccchhHHHHHHhhcccccchhHHHHHHHhhhhhcc-CCCHHHHHHHHHHHHHhhhhhHHH
Q 039425          190 RELALMTVIQKHFPSATTFLCRWYISRNVLVNCKNLFEANEIWQTFISSWNLLIL-SASEEEFAQRLKGMETDFSKYLIA  268 (413)
Q Consensus       190 ~~~al~~Ai~~vfP~a~~~lC~~Hi~kn~~~~~~~~~~~~~~~~~~~~~~~~l~~-a~t~~ef~~~~~~~~~~~~~~~~~  268 (413)
                      +|.||.+||.+|||++.|++|.|||.+|+.+++...+..   .+.|...|..+++ +.+++||+..|..+.++|+-.  -
T Consensus       355 qd~am~~AI~~VfP~t~Hr~C~wHI~~~~~e~L~~~~~~---~~~f~~~f~~cv~~s~t~eEFE~~W~~mi~ky~L~--~  429 (846)
T PLN03097        355 QDKAMKSVISEVFPNAHHCFFLWHILGKVSENLGQVIKQ---HENFMAKFEKCIYRSWTEEEFGKRWWKILDRFELK--E  429 (846)
T ss_pred             CCHHHHHHHHHHCCCceehhhHHHHHHHHHHHhhHHhhh---hhHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccc--c
Confidence            999999999999999999999999999999998876643   3468888888877 889999999999999998621  1


Q ss_pred             HHHHHHhhhHHHHhHHHHHHhhccccccchhhhhhhhhhhhhhhhh----------------------------------
Q 039425          269 LTYIRNVWLDKYKDKFVSAWTNSVMHFRNIKASLERSLTMVQHDFK----------------------------------  314 (413)
Q Consensus       269 ~~Y~~~~Wl~~~ke~w~~a~~~~~~~~g~~tts~~eS~~~v~~~~k----------------------------------  314 (413)
                      -+|+..-|  ..|++||.+|+++.+..|+.+|+++||+|...++|-                                  
T Consensus       430 n~WL~~LY--~~RekWapaY~k~~F~agm~sTqRSES~Ns~fk~yv~~~tsL~~Fv~qye~~l~~~~ekE~~aD~~s~~~  507 (846)
T PLN03097        430 DEWMQSLY--EDRKQWVPTYMRDAFLAGMSTVQRSESINAFFDKYVHKKTTVQEFVKQYETILQDRYEEEAKADSDTWNK  507 (846)
T ss_pred             cHHHHHHH--HhHhhhhHHHhcccccCCcccccccccHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccC
Confidence            23455444  679999999999999999999999999987533210                                  


Q ss_pred             h-------hhhhhccccccHHHHHHHHHHhhhhcc---------------------------C--C--CCCCCCCceecc
Q 039425          315 L-------LIFKELRGFVATNALTMILDESRRVDS---------------------------L--G--PDVFACGCIIRH  356 (413)
Q Consensus       315 ~-------~~~~~l~g~iS~~Al~~~~~q~~~~~~---------------------------~--~--~~~~~Csc~~~~  356 (413)
                      .       ++-....+..|+..++++.+|+..+..                           |  +  ....+|+|..|+
T Consensus       508 ~P~l~t~~piEkQAs~iYT~~iF~kFQ~El~~~~~~~~~~~~~dg~~~~y~V~~~~~~~~~~V~~d~~~~~v~CsC~kFE  587 (846)
T PLN03097        508 QPALKSPSPLEKSVSGVYTHAVFKKFQVEVLGAVACHPKMESQDETSITFRVQDFEKNQDFTVTWNQTKLEVSCICRLFE  587 (846)
T ss_pred             CcccccccHHHHHHHHHhHHHHHHHHHHHHHHhhheEEeeeccCCceEEEEEEEecCCCcEEEEEecCCCeEEeeccCee
Confidence            0       122223456677888888887765410                           0  1  125799999999


Q ss_pred             ccccCchHHHHHHHHHhHH-----HHhhhccccc
Q 039425          357 THGLPRAPEITEYKREEIE-----MIVKRFNDSD  385 (413)
Q Consensus       357 ~~GlPC~H~l~~~~~~~~~-----~~~~~w~~~~  385 (413)
                      ..||||+|+|.++....+.     -|.+||++..
T Consensus       588 ~~GILCrHaLkVL~~~~v~~IP~~YILkRWTKdA  621 (846)
T PLN03097        588 YKGYLCRHALVVLQMCQLSAIPSQYILKRWTKDA  621 (846)
T ss_pred             cCccchhhHHHHHhhcCcccCchhhhhhhchhhh
Confidence            9999999999999887443     4899997433

>PF00872 Transposase_mut: Transposase, Mutator family; InterPro: IPR001207 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element

Probab=99.90  E-value=3.4e-25  Score=217.87  Aligned_cols=259  Identities=15%  Similarity=0.098  Sum_probs=203.6

Q ss_pred             Cceeeeecccccc-------ccCCCCCHHHHHHHHHHHhCCCChHHHHHHHHhcCCCCCcchhhHHHHHHHhhhhhhcCc
Q 039425            2 GSITILLHNLEGH-------SFAGILNKEKSNLLVDMSKNNVRPKDILHVLKKRNMHNATTIRAIYNARRKYKVREQAGH   74 (413)
Q Consensus         2 ~~~~~~~~~~~~h-------p~~rrlt~~~~~~i~~L~~~g~~~~~I~~~l~~~~~~~~~t~~di~n~~~~~~~~~~~~~   74 (413)
                      |.|+|-++-.-..       |.++|.+++..+.|..|+..|+|+++|.+.|...+|+..++...|.++..++..+..   
T Consensus        74 G~i~l~vPR~R~g~f~p~ll~~y~r~~~~l~~~i~~ly~~G~Str~i~~~l~~l~g~~~~S~s~vSri~~~~~~~~~---  150 (381)
T PF00872_consen   74 GEIELRVPRDRNGSFEPQLLPKYQRREDSLEELIISLYLKGVSTRDIEEALEELYGEVAVSKSTVSRITKQLDEEVE---  150 (381)
T ss_pred             cceeecccccccccccccccchhhhhhhhhhhhhhhhhccccccccccchhhhhhcccccCchhhhhhhhhhhhhHH---
Confidence            5555555443332       345556788889999999999999999999999987455888888887776543321   


Q ss_pred             HHHHHHHHHHhhcCcEEEEeecCCCCceeeEEeeChhhHHHHhhC-CCEEEeeccccccCC-----CCceeeEEEeeccC
Q 039425           75 SQMQLLMSKLIEHKYIERHKSDVDTNCVEALFLAHPSAIESLQAF-PRVLIMDCTYQTNRY-----DMPLLEIAGVTSID  148 (413)
Q Consensus        75 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~vl~iD~Ty~tn~~-----~~~l~~~~g~~~~g  148 (413)
                          ++    .       .+.+++                    . ..+|++|++|-+.+.     +..+++++|++.+|
T Consensus       151 ----~w----~-------~R~L~~--------------------~~y~~l~iD~~~~kvr~~~~~~~~~~~v~iGi~~dG  195 (381)
T PF00872_consen  151 ----AW----R-------NRPLES--------------------EPYPYLWIDGTYFKVREDGRVVKKAVYVAIGIDEDG  195 (381)
T ss_pred             ----HH----h-------hhcccc--------------------ccccceeeeeeecccccccccccchhhhhhhhhccc
Confidence                11    1       111111                    1 246889999987653     35789999999999


Q ss_pred             cEEEEEEEeecccccchHHHHHHHHHHHHhccccceEEEeccchHHHHHHHHhCCccccccccchhHHHHHHhhcccccc
Q 039425          149 LTFSVCCVYLKLKWENNYIWALERLKSIMEENMLASVIVTDRELALMTVIQKHFPSATTFLCRWYISRNVLVNCKNLFEA  228 (413)
Q Consensus       149 ~~~~~~~~~~~~E~~~~~~~~l~~l~~~~~~~~~p~~iitD~~~al~~Ai~~vfP~a~~~lC~~Hi~kn~~~~~~~~~~~  228 (413)
                      +..++|+.+..+|+.++|..+|+.|++.  |...|..||+|+.+|+.+||+++||++.+|.|++|+.||+.+++.+    
T Consensus       196 ~r~vLg~~~~~~Es~~~W~~~l~~L~~R--Gl~~~~lvv~Dg~~gl~~ai~~~fp~a~~QrC~vH~~RNv~~~v~~----  269 (381)
T PF00872_consen  196 RREVLGFWVGDRESAASWREFLQDLKER--GLKDILLVVSDGHKGLKEAIREVFPGAKWQRCVVHLMRNVLRKVPK----  269 (381)
T ss_pred             ccceeeeecccCCccCEeeecchhhhhc--cccccceeeccccccccccccccccchhhhhheechhhhhcccccc----
Confidence            9999999999999999999999999998  8889999999999999999999999999999999999999999865    


Q ss_pred             hhHHHHHHHhhhhhccCCCHHHHHHHHHHHHHhhh-hhHHHHHHHHHhhhHHHHhHHHHHHhhccccc-cchhhhhhhhh
Q 039425          229 NEIWQTFISSWNLLILSASEEEFAQRLKGMETDFS-KYLIALTYIRNVWLDKYKDKFVSAWTNSVMHF-RNIKASLERSL  306 (413)
Q Consensus       229 ~~~~~~~~~~~~~l~~a~t~~ef~~~~~~~~~~~~-~~~~~~~Y~~~~Wl~~~ke~w~~a~~~~~~~~-g~~tts~~eS~  306 (413)
                       ..++.+..+++.+..+.+.+++.+.+++|.+.|. ++|.+.++++++|- .   .| .+|.-...+. -..|||..||+
T Consensus       270 -k~~~~v~~~Lk~I~~a~~~e~a~~~l~~f~~~~~~kyp~~~~~l~~~~~-~---~~-tf~~fP~~~~~~i~TTN~iEsl  343 (381)
T PF00872_consen  270 -KDRKEVKADLKAIYQAPDKEEAREALEEFAEKWEKKYPKAAKSLEENWD-E---LL-TFLDFPPEHRRSIRTTNAIESL  343 (381)
T ss_pred             -ccchhhhhhccccccccccchhhhhhhhcccccccccchhhhhhhhccc-c---cc-ceeeecchhccccchhhhcccc
Confidence             3456788999999999999999999999999886 79999999999883 1   11 1111111111 23699999999


Q ss_pred             hhhh
Q 039425          307 TMVQ  310 (413)
Q Consensus       307 ~~v~  310 (413)
                      |...
T Consensus       344 n~~i  347 (381)
T PF00872_consen  344 NKEI  347 (381)
T ss_pred             ccch
Confidence            9644

Transposases have been grouped into various families [, , ]. The mutator family of transposases consists of a number of elements that include, mutator from maize, IsT2 from Thiobacillus ferrooxidans, Is256 from Staphylococcus aureus, Is1201 from Lactobacillus helveticus, Is1081 from Mycobacterium bovis, IsRm3 from Rhizobium meliloti and others. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated

>PF10551 MULE: MULE transposase domain; InterPro: IPR018289 This entry represents a domain found in Mutator-like elements (MULE)-encoded tranposases, some of which also contain a zinc-finger motif [, ]

Probab=99.89  E-value=1.7e-23  Score=164.96  Aligned_cols=90  Identities=37%  Similarity=0.594  Sum_probs=85.3

Q ss_pred             ccccccCCCCceee---EEEeeccCcEEEEEEEeecccccchHHHHHHHHHHHHhccccceEEEeccchHHHHHHHHhCC
Q 039425          127 CTYQTNRYDMPLLE---IAGVTSIDLTFSVCCVYLKLKWENNYIWALERLKSIMEENMLASVIVTDRELALMTVIQKHFP  203 (413)
Q Consensus       127 ~Ty~tn~~~~~l~~---~~g~~~~g~~~~~~~~~~~~E~~~~~~~~l~~l~~~~~~~~~p~~iitD~~~al~~Ai~~vfP  203 (413)
                      |||+||+| ++++.   ++|+|++|+.+|++|+++++|+.++|.|+|+.+++.+.. . |.+||||++.|+++||+++||
T Consensus         1 ~T~~tn~~-~~l~~~~~~~~~d~~~~~~~v~~~l~~~e~~~~~~~~l~~~~~~~~~-~-p~~ii~D~~~~~~~Ai~~vfP   77 (93)
T PF10551_consen    1 GTYKTNKY-GPLLYLMIAVGIDGNGRGFPVAFALVSSESEESYEWFLEKLKEAMPQ-K-PKVIISDFDKALINAIKEVFP   77 (93)
T ss_pred             Cccccccc-cccceeceEEEEcCCCCEEEEEEEEEcCCChhhhHHHHHHhhhcccc-C-ceeeeccccHHHHHHHHHHCC
Confidence            79999999 88885   999999999999999999999999999999999999843 5 999999999999999999999


Q ss_pred             ccccccccchhHHHHH
Q 039425          204 SATTFLCRWYISRNVL  219 (413)
Q Consensus       204 ~a~~~lC~~Hi~kn~~  219 (413)
                      ++.|++|.||+.||++
T Consensus        78 ~~~~~~C~~H~~~n~k   93 (93)
T PF10551_consen   78 DARHQLCLFHILRNIK   93 (93)
T ss_pred             CceEehhHHHHHHhhC
Confidence            9999999999999974

This domain is also found in a transposase for the insertion sequence element IS256 in transposon Tn4001 [].

>COG3328 Transposase and inactivated derivatives [DNA replication, recombination, and repair]

Probab=99.63  E-value=6.8e-15  Score=142.37  Aligned_cols=237  Identities=15%  Similarity=0.090  Sum_probs=180.9

Q ss_pred             CCCHHHHHHHHHHHhCCCChHHHHHHHHhcCCCCCcchhhHHHHHHHhhhhhhcCcHHHHHHHHHHhhcCcEEEEeecCC
Q 039425           19 ILNKEKSNLLVDMSKNNVRPKDILHVLKKRNMHNATTIRAIYNARRKYKVREQAGHSQMQLLMSKLIEHKYIERHKSDVD   98 (413)
Q Consensus        19 rlt~~~~~~i~~L~~~g~~~~~I~~~l~~~~~~~~~t~~di~n~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~   98 (413)
                      |-.......|..|+..|+++++|-..++.+++. .+....|..+..++..+.           ..++..+.         
T Consensus        84 r~~~~~~~~v~~~y~~gv~Tr~i~~~~~~~~~~-~~s~~~iS~~~~~~~e~v-----------~~~~~r~l---------  142 (379)
T COG3328          84 RRERALDLPVLSMYAKGVTTREIEALLEELYGH-KVSPSVISVVTDRLDEKV-----------KAWQNRPL---------  142 (379)
T ss_pred             hhhhhHHHHHHHHHHcCCcHHHHHHHHHHhhCc-ccCHHHhhhHHHHHHHHH-----------HHHHhccc---------
Confidence            334556688999999999999999999999744 455555555544332211           11111110         


Q ss_pred             CCceeeEEeeChhhHHHHhhCCCEEEeeccccccC--CCCceeeEEEeeccCcEEEEEEEeecccccchHHHHHHHHHHH
Q 039425           99 TNCVEALFLAHPSAIESLQAFPRVLIMDCTYQTNR--YDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALERLKSI  176 (413)
Q Consensus        99 ~~~~~~l~~~~~~~~~~~~~~~~vl~iD~Ty~tn~--~~~~l~~~~g~~~~g~~~~~~~~~~~~E~~~~~~~~l~~l~~~  176 (413)
                                         .--.++++|++|.+-+  -+..++.++|++.+|+..++|+.+-.+|+ ..|.-+|..|+..
T Consensus       143 -------------------~~~~~v~~D~~~~k~r~v~~~~~~ia~Gv~~eG~reilg~~~~~~e~-~~w~~~l~~l~~r  202 (379)
T COG3328         143 -------------------GDYPYVYLDAKYVKVRSVRNKAVYIAIGVTEEGRREILGIWVGVRES-KFWLSFLLDLKNR  202 (379)
T ss_pred             -------------------cCceEEEEecceeehhhhhhheeeeeeccCcccchhhhceeeecccc-hhHHHHHHHHHhc
Confidence                               0124688999999887  44679999999999999999999999999 8899888888877


Q ss_pred             HhccccceEEEeccchHHHHHHHHhCCccccccccchhHHHHHHhhcccccchhHHHHHHHhhhhhccCCCHHHHHHHHH
Q 039425          177 MEENMLASVIVTDRELALMTVIQKHFPSATTFLCRWYISRNVLVNCKNLFEANEIWQTFISSWNLLILSASEEEFAQRLK  256 (413)
Q Consensus       177 ~~~~~~p~~iitD~~~al~~Ai~~vfP~a~~~lC~~Hi~kn~~~~~~~~~~~~~~~~~~~~~~~~l~~a~t~~ef~~~~~  256 (413)
                        |......+++|+.+++.+||.++||.+.+|.|..|+.+|+..+...     .+++.+...++.+..+++.++....|.
T Consensus       203 --gl~~v~l~v~Dg~~gl~~aI~~v~p~a~~Q~C~vH~~Rnll~~v~~-----k~~d~i~~~~~~I~~a~~~e~~~~~~~  275 (379)
T COG3328         203 --GLSDVLLVVVDGLKGLPEAISAVFPQAAVQRCIVHLVRNLLDKVPR-----KDQDAVLSDLRSIYIAPDAEEALLALL  275 (379)
T ss_pred             --cccceeEEecchhhhhHHHHHHhccHhhhhhhhhHHHhhhhhhhhh-----hhhHHHHhhhhhhhccCCcHHHHHHHH
Confidence              6778888999999999999999999999999999999999998765     445678888888999999999999999


Q ss_pred             HHHHhhh-hhHHHHHHHHHhhhHHHHhHHHHHHhhcccc---ccchhhhhhhhhhhhh
Q 039425          257 GMETDFS-KYLIALTYIRNVWLDKYKDKFVSAWTNSVMH---FRNIKASLERSLTMVQ  310 (413)
Q Consensus       257 ~~~~~~~-~~~~~~~Y~~~~Wl~~~ke~w~~a~~~~~~~---~g~~tts~~eS~~~v~  310 (413)
                      .+.+.|. .+|.....+.++|..    .| . | ...|.   --..+||..|++|.+.
T Consensus       276 ~~~~~w~~~yP~i~~~~~~~~~~----~~-~-F-~~fp~~~r~~i~ttN~IE~~n~~i  326 (379)
T COG3328         276 AFSELWGKRYPAILKSWRNALEE----LL-P-F-FAFPSEIRKIIYTTNAIESLNKLI  326 (379)
T ss_pred             HHHHhhhhhcchHHHHHHHHHHH----hc-c-c-ccCcHHHHhHhhcchHHHHHHHHH
Confidence            9998776 688888888888742    11 0 1 11111   0135677788888644

>smart00575 ZnF_PMZ plant mutator transposase zinc finger

Probab=98.38  E-value=1.6e-07  Score=55.79  Aligned_cols=25  Identities=16%  Similarity=0.305  Sum_probs=22.4

Q ss_pred             CCCCceeccccccCchHHHHHHHHH
Q 039425          348 FACGCIIRHTHGLPRAPEITEYKRE  372 (413)
Q Consensus       348 ~~Csc~~~~~~GlPC~H~l~~~~~~  372 (413)
                      .+|+|+.|+..||||+|+|+++...
T Consensus         1 ~~CsC~~~~~~gipC~H~i~v~~~~   25 (28)
T smart00575        1 KTCSCRKFQLSGIPCRHALAAAIHI   25 (28)
T ss_pred             CcccCCCcccCCccHHHHHHHHHHh
Confidence            3799999999999999999998753

>PF06782 UPF0236: Uncharacterised protein family (UPF0236); InterPro: IPR009620 This is a group of proteins of unknown function

Probab=98.06  E-value=0.0003  Score=71.50  Aligned_cols=220  Identities=13%  Similarity=0.111  Sum_probs=133.8

Q ss_pred             cccccccCCCCCHHHHHHHHHHHhCCCChHHHHHHHHhcCCCCCcchhhHHHHHHHhhhhhhcCcHHHHHHHHHHhhcCc
Q 039425           10 NLEGHSFAGILNKEKSNLLVDMSKNNVRPKDILHVLKKRNMHNATTIRAIYNARRKYKVREQAGHSQMQLLMSKLIEHKY   89 (413)
Q Consensus        10 ~~~~hp~~rrlt~~~~~~i~~L~~~g~~~~~I~~~l~~~~~~~~~t~~di~n~~~~~~~~~~~~~~~~~~l~~~l~~~~~   89 (413)
                      ...|=+.+.|+|++.+..|..+... +|-++..+.|....+...++...|+|..+.+.......            +   
T Consensus       108 e~LGl~~~~R~S~~~~~~i~~~a~~-~sYr~aa~~l~~~~~~~~iS~~tV~~~v~~~g~~~~~~------------~---  171 (470)
T PF06782_consen  108 EKLGLKKYQRISPELKEKIVELATE-MSYRKAAEILEELLGNVSISKQTVWNIVKEAGFEEIKE------------E---  171 (470)
T ss_pred             HHhCCCcccchhHHHHHHHHHHHhh-cCHHHHHHHHhhccCCCccCHHHHHHHHHhccchhhhc------------c---
Confidence            3445567889999999999999655 99999999998887656789999999998775211100            0   


Q ss_pred             EEEEeecCCCCceeeEEeeChhhHHHHhhCCCEEEeeccccccC----CC--Cce-eeEEE---eec-cCcEEEEEE-Ee
Q 039425           90 IERHKSDVDTNCVEALFLAHPSAIESLQAFPRVLIMDCTYQTNR----YD--MPL-LEIAG---VTS-IDLTFSVCC-VY  157 (413)
Q Consensus        90 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vl~iD~Ty~tn~----~~--~~l-~~~~g---~~~-~g~~~~~~~-~~  157 (413)
                            ..+...+..|+                |-.|++|-..+    .+  ..+ ++-.|   ... .++...+.- .+
T Consensus       172 ------~~~k~~~~~Ly----------------IEaDg~~v~~qg~~~~~~e~k~~~vheG~~~~~~~~~R~~L~n~~~f  229 (470)
T PF06782_consen  172 ------EKEKKKVPVLY----------------IEADGVHVKLQGKKKKKKEVKLFVVHEGWEKEKPGGKRNKLKNKRHF  229 (470)
T ss_pred             ------ccccCCCCeEE----------------EecCcceecccccccccceeeEEEEEeeeeeeeccCCcceeecchhe
Confidence                  00111111122                22333333211    11  111 22223   111 122222222 33


Q ss_pred             ec---ccccchHHHHHHHHHHHHhcccc--ceEEEeccchHHHHHHHHhCCccccccccchhHHHHHHhhcccccchhHH
Q 039425          158 LK---LKWENNYIWALERLKSIMEENML--ASVIVTDRELALMTVIQKHFPSATTFLCRWYISRNVLVNCKNLFEANEIW  232 (413)
Q Consensus       158 ~~---~E~~~~~~~~l~~l~~~~~~~~~--p~~iitD~~~al~~Ai~~vfP~a~~~lC~~Hi~kn~~~~~~~~~~~~~~~  232 (413)
                      +.   ....+.|..+.+.+.+... ...  -.++.+|+...+.+++. .||++.+++..||+.|.+.+.+...-   +  
T Consensus       230 ~~~~~~~~~~~~~~v~~~i~~~Y~-~~~~~~iiingDGa~WIk~~~~-~~~~~~~~LD~FHl~k~i~~~~~~~~---~--  302 (470)
T PF06782_consen  230 VSGVGESAEEFWEEVLDYIYNHYD-LDKTTKIIINGDGASWIKEGAE-FFPKAEYFLDRFHLNKKIKQALSHDP---E--  302 (470)
T ss_pred             ecccccchHHHHHHHHHHHHHhcC-cccceEEEEeCCCcHHHHHHHH-hhcCceEEecHHHHHHHHHHHhhhCh---H--
Confidence            33   3445677888887777763 222  35678899988887766 99999999999999999998875421   1  


Q ss_pred             HHHHHhhhhhccCCCHHHHHHHHHHHHHhhh------hhHHHHHHHHHhh
Q 039425          233 QTFISSWNLLILSASEEEFAQRLKGMETDFS------KYLIALTYIRNVW  276 (413)
Q Consensus       233 ~~~~~~~~~l~~a~t~~ef~~~~~~~~~~~~------~~~~~~~Y~~~~W  276 (413)
                        ........+...+..++...++.+.....      ....+..|+.++|
T Consensus       303 --~~~~~~~al~~~d~~~l~~~L~~~~~~~~~~~~~~~i~~~~~Yl~~n~  350 (470)
T PF06782_consen  303 --LKEKIRKALKKGDKKKLETVLDTAESCAKDEEERKKIRKLRKYLLNNW  350 (470)
T ss_pred             --HHHHHHHHHHhcCHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHCH
Confidence              22222233345566777777777665332      2347889999999

>PF04434 SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.44  E-value=7.1e-05  Score=48.57  Aligned_cols=27  Identities=15%  Similarity=0.204  Sum_probs=24.2

Q ss_pred             CCCCCCCceeccccccCchHHHHHHHH
Q 039425          345 PDVFACGCIIRHTHGLPRAPEITEYKR  371 (413)
Q Consensus       345 ~~~~~Csc~~~~~~GlPC~H~l~~~~~  371 (413)
                      .....|+|..++..|.||.|++|+++.
T Consensus        12 ~~~~~CsC~~~~~~~~~CkHi~av~~~   38 (40)
T PF04434_consen   12 IEQASCSCPYFQFRGGPCKHIVAVLLA   38 (40)
T ss_pred             ccccEeeCCCccccCCcchhHHHHHHh
Confidence            457999999999999999999998864

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the SWIM (SWI2/SNF2 and MuDR) zinc-binding domain, which is found in a variety of prokaryotic and eukaryotic proteins, such as mitogen-activated protein kinase kinase kinase 1 (or MEKK1). It is also found in the related protein MEX (MEKK1-related protein X), a testis-expressed protein that acts as an E3 ubiquitin ligase through the action of E2 ubiquitin-conjugating enzymes in the proteasome degradation pathway; the SWIM domain is critical for MEX ubiquitination []. SWIM domains are also found in the homologous recombination protein Sws1 [], as well as in several hypothetical proteins. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding

>PF01610 DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element

Probab=96.78  E-value=0.002  Score=59.86  Aligned_cols=93  Identities=13%  Similarity=-0.044  Sum_probs=66.2

Q ss_pred             EeeccccccCCCCceeeEEEeec--cCcEEEEEEEeecccccchHHHHHHHH-HHHHhccccceEEEeccchHHHHHHHH
Q 039425          124 IMDCTYQTNRYDMPLLEIAGVTS--IDLTFSVCCVYLKLKWENNYIWALERL-KSIMEENMLASVIVTDRELALMTVIQK  200 (413)
Q Consensus       124 ~iD~Ty~tn~~~~~l~~~~g~~~--~g~~~~~~~~~~~~E~~~~~~~~l~~l-~~~~~~~~~p~~iitD~~~al~~Ai~~  200 (413)
                      +||=+......+.  |..+.+|.  ++..   .+.++++-+.+++..+|..+ -..  ....+++|++|...+...|+++
T Consensus         2 giDE~~~~~g~~~--y~t~~~d~~~~~~~---il~i~~~r~~~~l~~~~~~~~~~~--~~~~v~~V~~Dm~~~y~~~~~~   74 (249)
T PF01610_consen    2 GIDEFAFRKGHRS--YVTVVVDLDTDTGR---ILDILPGRDKETLKDFFRSLYPEE--ERKNVKVVSMDMSPPYRSAIRE   74 (249)
T ss_pred             eEeeeeeecCCcc--eeEEEEECccCCce---EEEEcCCccHHHHHHHHHHhCccc--cccceEEEEcCCCccccccccc
Confidence            4555444332321  44444554  3322   23478888888887777665 333  3578899999999999999999


Q ss_pred             hCCccccccccchhHHHHHHhhc
Q 039425          201 HFPSATTFLCRWYISRNVLVNCK  223 (413)
Q Consensus       201 vfP~a~~~lC~~Hi~kn~~~~~~  223 (413)
                      .||+|.+..-.||+++++.+.+.
T Consensus        75 ~~P~A~iv~DrFHvvk~~~~al~   97 (249)
T PF01610_consen   75 YFPNAQIVADRFHVVKLANRALD   97 (249)
T ss_pred             cccccccccccchhhhhhhhcch
Confidence            99999999999999999977544

Transposases have been grouped into various families [, , ]. This family includes the IS204 [], IS1001 [], IS1096 [] and IS1165 [] transposases. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated

>PF13610 DDE_Tnp_IS240: DDE domain

Probab=95.37  E-value=0.015  Score=49.08  Aligned_cols=81  Identities=17%  Similarity=-0.017  Sum_probs=64.0

Q ss_pred             CCEEEeeccccccCCCCceeeEEEeeccCcEEEEEEEeecccccchHHHHHHHHHHHHhccccceEEEeccchHHHHHHH
Q 039425          120 PRVLIMDCTYQTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALERLKSIMEENMLASVIVTDRELALMTVIQ  199 (413)
Q Consensus       120 ~~vl~iD~Ty~tn~~~~~l~~~~g~~~~g~~~~~~~~~~~~E~~~~~~~~l~~l~~~~~~~~~p~~iitD~~~al~~Ai~  199 (413)
                      ++.+.+|-||-+-+.. ..+....+|.+|.  ++.+-+.+.-+...=..||..+.+..  ...|..|+||+..+...|++
T Consensus         1 ~~~w~~DEt~iki~G~-~~yl~~aiD~~~~--~l~~~ls~~Rd~~aA~~Fl~~~l~~~--~~~p~~ivtDk~~aY~~A~~   75 (140)
T PF13610_consen    1 GDSWHVDETYIKIKGK-WHYLWRAIDAEGN--ILDFYLSKRRDTAAAKRFLKRALKRH--RGEPRVIVTDKLPAYPAAIK   75 (140)
T ss_pred             CCEEEEeeEEEEECCE-EEEEEEeeccccc--chhhhhhhhcccccceeeccccceee--ccccceeecccCCccchhhh
Confidence            4678999999765533 3556777888888  78888887777776666776666664  38999999999999999999


Q ss_pred             HhCCcc
Q 039425          200 KHFPSA  205 (413)
Q Consensus       200 ~vfP~a  205 (413)
                      +.+|+-
T Consensus        76 ~l~~~~   81 (140)
T PF13610_consen   76 ELNPEG   81 (140)
T ss_pred             hccccc
Confidence            999874

>PF03050 DDE_Tnp_IS66: Transposase IS66 family ; InterPro: IPR004291 Transposase proteins are necessary for efficient DNA transposition

Probab=94.93  E-value=0.16  Score=47.71  Aligned_cols=148  Identities=14%  Similarity=0.045  Sum_probs=91.7

Q ss_pred             CCCHHHHHHHHHHHh-CCCChHHHHHHHHhcCCCCCcchhhHHHHHHHhhhhhhcCcHHHHHHHHHHhhcCcEEEEeecC
Q 039425           19 ILNKEKSNLLVDMSK-NNVRPKDILHVLKKRNMHNATTIRAIYNARRKYKVREQAGHSQMQLLMSKLIEHKYIERHKSDV   97 (413)
Q Consensus        19 rlt~~~~~~i~~L~~-~g~~~~~I~~~l~~~~~~~~~t~~di~n~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~   97 (413)
                      +.++.....|.-|.- .+++-..|.+.+.+.  |..++...|.|...+.... +.  ...+.+.+.+..           
T Consensus         3 ~~g~~~~a~i~~l~~~~~lp~~r~~~~~~~~--G~~is~~ti~~~~~~~~~~-l~--~~~~~l~~~~~~-----------   66 (271)
T PF03050_consen    3 RYGPSLLALIAYLKYVYHLPLYRIQQMLEDL--GITISRGTIANWIKRVAEA-LK--PLYEALKEELRS-----------   66 (271)
T ss_pred             cCCHHHHHHHHHHHhcCCCCHHHHhhhhhcc--ceeeccchhHhHhhhhhhh-hh--hhhhhhhhhccc-----------
Confidence            445666676666555 689999999999888  4557888999988876554 21  122222333332           


Q ss_pred             CCCceeeEEeeChhhHHHHhhCCCEEEeeccccc-----cCCCCceeeEEEeeccCcEEEEEEEeecccccchHHHHHHH
Q 039425           98 DTNCVEALFLAHPSAIESLQAFPRVLIMDCTYQT-----NRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALER  172 (413)
Q Consensus        98 ~~~~~~~l~~~~~~~~~~~~~~~~vl~iD~Ty~t-----n~~~~~l~~~~g~~~~g~~~~~~~~~~~~E~~~~~~~~l~~  172 (413)
                                            .+++.+|-|.-.     +..+.-+.++++-+      .+.|.+.++-..+....+|..
T Consensus        67 ----------------------~~~~~~DET~~~vl~~~~g~~~~~Wv~~~~~------~v~f~~~~sR~~~~~~~~L~~  118 (271)
T PF03050_consen   67 ----------------------SPVVHADETGWRVLDKGKGKKGYLWVFVSPE------VVLFFYAPSRSSKVIKEFLGD  118 (271)
T ss_pred             ----------------------cceeccCCceEEEeccccccceEEEeeeccc------eeeeeecccccccchhhhhcc
Confidence                                  334444444332     22223344444332      566666666666655444322


Q ss_pred             HHHHHhccccceEEEeccchHHHHHHHHhCCccccccccchhHHHHHHhhcc
Q 039425          173 LKSIMEENMLASVIVTDRELALMTVIQKHFPSATTFLCRWYISRNVLVNCKN  224 (413)
Q Consensus       173 l~~~~~~~~~p~~iitD~~~al~~Ai~~vfP~a~~~lC~~Hi~kn~~~~~~~  224 (413)
                               ...+++||+-.+-..     +.++.|+.|+-|+.|.+..-...
T Consensus       119 ---------~~GilvsD~y~~Y~~-----~~~~~hq~C~AH~~R~~~~~~~~  156 (271)
T PF03050_consen  119 ---------FSGILVSDGYSAYNK-----LAGITHQLCWAHLRRDFQDAAES  156 (271)
T ss_pred             ---------cceeeeccccccccc-----ccccccccccccccccccccccc
Confidence                     336999999988754     33889999999999999876554

This family includes the bacterial insertion sequence (IS) element, IS66, from Agrobacterium tumefaciens []. IS66 may cause genetic and structural variations of the T region and the vir region of the octopine Ti plasmids []. More information about these proteins can be found at Protein of the Month: Transposase [].

>PF13936 HTH_38: Helix-turn-helix domain; PDB: 2W48_A

Probab=91.54  E-value=0.13  Score=33.96  Aligned_cols=32  Identities=16%  Similarity=0.208  Sum_probs=15.6

Q ss_pred             CCCCCHHHHHHHHHHHhCCCChHHHHHHHHhc
Q 039425           17 AGILNKEKSNLLVDMSKNNVRPKDILHVLKKR   48 (413)
Q Consensus        17 ~rrlt~~~~~~i~~L~~~g~~~~~I~~~l~~~   48 (413)
                      +++||++++..|..|.+.|.+.++|+..|...
T Consensus         2 ~~~Lt~~eR~~I~~l~~~G~s~~~IA~~lg~s   33 (44)
T PF13936_consen    2 YKHLTPEERNQIEALLEQGMSIREIAKRLGRS   33 (44)
T ss_dssp             ----------HHHHHHCS---HHHHHHHTT--
T ss_pred             ccchhhhHHHHHHHHHHcCCCHHHHHHHHCcC
Confidence            57899999999999999999999999876543

>PF00665 rve: Integrase core domain; InterPro: IPR001584 Integrase comprises three domains capable of folding independently and whose three-dimensional structures are known

Probab=89.44  E-value=2.4  Score=33.91  Aligned_cols=76  Identities=12%  Similarity=-0.057  Sum_probs=49.3

Q ss_pred             CCEEEeeccccc-cCCCCceeeEEEeeccCcEEEEEEEeecccccchHHHHHHHHHHHHhccccceEEEeccchHHHHH
Q 039425          120 PRVLIMDCTYQT-NRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALERLKSIMEENMLASVIVTDRELALMTV  197 (413)
Q Consensus       120 ~~vl~iD~Ty~t-n~~~~~l~~~~g~~~~g~~~~~~~~~~~~E~~~~~~~~l~~l~~~~~~~~~p~~iitD~~~al~~A  197 (413)
                      ++.+.+|.+... ...+...+.++.+|..-+. .+++.+-..++.+.+..+|....... +...|++|++|+..+..+.
T Consensus         6 ~~~~~~D~~~~~~~~~~~~~~~~~~iD~~S~~-~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~p~~i~tD~g~~f~~~   82 (120)
T PF00665_consen    6 GERWQIDFTPMPIPDKGGRVYLLVFIDDYSRF-IYAFPVSSKETAEAALRALKRAIEKR-GGRPPRVIRTDNGSEFTSH   82 (120)
T ss_dssp             TTEEEEEEEEETGGCTT-CEEEEEEEETTTTE-EEEEEESSSSHHHHHHHHHHHHHHHH-S-SE-SEEEEESCHHHHSH
T ss_pred             CCEEEEeeEEEecCCCCccEEEEEEEECCCCc-EEEEEeeccccccccccccccccccc-ccccceecccccccccccc
Confidence            468899988543 3344467778888766654 45666666656666666666555554 2233999999999998744

However, the manner in which the N-terminal, catalytic, and C-terminal domains interact in the holoenzyme remains obscure. Numerous studies indicate that the enzyme functions as a multimer, minimally a dimer. The integrase proteins from Human immunodeficiency virus 1 (HIV-1) and Avian sarcoma virus (ASV) have been studied most carefully with respect to the structural basis of catalysis. Although the active site of ASV integrase does not undergo significant conformational changes on binding the required metal cofactor, that of HIV-1 does. This active site-mediated conformational change in HIV-1 reorganises the catalytic core and C-terminal domains and appears to promote an interaction that is favourable for catalysis []. Retroviral integrase is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. The presence of retrovirus integrase-related gene sequences in eukaryotes is known. Bacterial transposases involved in the transposition of the insertion sequence also belong to this group. HIV integrase catalyses the incorporation of virally derived DNA into the human genome. This unique step in the virus life cycle provides a variety of points for intervention and hence is an attractive target for the development of new therapeutics for the treatment of AIDS []. Substrate recognition by the retroviral integrase enzyme is critical for retroviral integration. To catalyse this recombination event, integrase must recognise and act on two types of substrates, viral DNA and host DNA, yet the necessary interactions exhibit markedly different degrees of specificity [].; GO: 0015074 DNA integration; PDB: 3AO3_A 3OVN_A 3AO5_A 3AO4_A 3AO1_A 1C6V_D 3HPG_A 3HPH_A 3OYD_A 3OYF_B ....

>PF08069 Ribosomal_S13_N: Ribosomal S13/S15 N-terminal domain; InterPro: IPR012606 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=88.79  E-value=0.56  Score=32.99  Aligned_cols=37  Identities=19%  Similarity=0.229  Sum_probs=27.6

Q ss_pred             cccCCCCC-HHHHHHHHHHHhCCCChHHHHHHHHhcCC
Q 039425           14 HSFAGILN-KEKSNLLVDMSKNNVRPKDILHVLKKRNM   50 (413)
Q Consensus        14 hp~~rrlt-~~~~~~i~~L~~~g~~~~~I~~~l~~~~~   50 (413)
                      .|..-.++ ++..+.|.+|...|++|.+|=.+|++++|
T Consensus        22 ~P~W~~~~~~eVe~~I~klakkG~tpSqIG~iLRD~~G   59 (60)
T PF08069_consen   22 PPSWLKYSPEEVEELIVKLAKKGLTPSQIGVILRDQYG   59 (60)
T ss_dssp             --TT--S-HHHHHHHHHHHCCTTHCHHHHHHHHHHSCT
T ss_pred             CCCCcCCCHHHHHHHHHHHHHcCCCHHHhhhhhhhccC
Confidence            34555555 55678899999999999999999999984

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found at the N terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 3U5C_N 3O30_G 3IZB_O 3O2Z_G 3U5G_N 2XZN_O 2XZM_O 3IZ6_O.

>PF04937 DUF659: Protein of unknown function (DUF 659); InterPro: IPR007021 These are transposase-like proteins with no known function

Probab=88.63  E-value=4  Score=34.90  Aligned_cols=107  Identities=13%  Similarity=0.059  Sum_probs=69.7

Q ss_pred             HHHhhCCCEEEeeccccccCCCCceeeEEEeeccCcEEEEEEEeecc--cccchHHHHHHHHHHHHhccccceEEEeccc
Q 039425          114 ESLQAFPRVLIMDCTYQTNRYDMPLLEIAGVTSIDLTFSVCCVYLKL--KWENNYIWALERLKSIMEENMLASVIVTDRE  191 (413)
Q Consensus       114 ~~~~~~~~vl~iD~Ty~tn~~~~~l~~~~g~~~~g~~~~~~~~~~~~--E~~~~~~~~l~~l~~~~~~~~~p~~iitD~~  191 (413)
                      +.+..++=-|..|+=  +++.+.+++.++...+.|..|.-.. -.++  .+.+.+-.+|+...+-. |.....-||||..
T Consensus        27 ~~w~~~Gcsi~~DgW--td~~~~~lInf~v~~~~g~~Flksv-d~s~~~~~a~~l~~ll~~vIeeV-G~~nVvqVVTDn~  102 (153)
T PF04937_consen   27 KSWKRTGCSIMSDGW--TDRKGRSLINFMVYCPEGTVFLKSV-DASSIIKTAEYLFELLDEVIEEV-GEENVVQVVTDNA  102 (153)
T ss_pred             HHHHhcCEEEEEecC--cCCCCCeEEEEEEEcccccEEEEEE-ecccccccHHHHHHHHHHHHHHh-hhhhhhHHhccCc
Confidence            334444555666665  4455667777777777776553332 2222  34445555555555544 4566777899999


Q ss_pred             hHHHHH---HHHhCCccccccccchhHHHHHHhhcc
Q 039425          192 LALMTV---IQKHFPSATTFLCRWYISRNVLVNCKN  224 (413)
Q Consensus       192 ~al~~A---i~~vfP~a~~~lC~~Hi~kn~~~~~~~  224 (413)
                      ..+..|   +.+-+|.-....|.-|-+.-+.+.+.+
T Consensus       103 ~~~~~a~~~L~~k~p~ifw~~CaaH~inLmledi~k  138 (153)
T PF04937_consen  103 SNMKKAGKLLMEKYPHIFWTPCAAHCINLMLEDIGK  138 (153)
T ss_pred             hhHHHHHHHHHhcCCCEEEechHHHHHHHHHHHHhc
Confidence            988877   445688888899999999888777654

>COG3316 Transposase and inactivated derivatives [DNA replication, recombination, and repair]

Probab=87.16  E-value=1.3  Score=39.66  Aligned_cols=142  Identities=14%  Similarity=0.053  Sum_probs=89.2

Q ss_pred             CCCHHHHHHHHHHHhC-CCChHHHHHHHHhcCCCCCcchhhHHHHHHHhhhhhhcCcHHHHHHHHHHhhcCcEEEEeecC
Q 039425           19 ILNKEKSNLLVDMSKN-NVRPKDILHVLKKRNMHNATTIRAIYNARRKYKVREQAGHSQMQLLMSKLIEHKYIERHKSDV   97 (413)
Q Consensus        19 rlt~~~~~~i~~L~~~-g~~~~~I~~~l~~~~~~~~~t~~di~n~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~   97 (413)
                      +...+.+.....++.. |++-+.|-+.+.+.+  ......+|++..+++-...          .+.+.+.     .    
T Consensus         8 ~f~~~vi~~~V~~yl~~~Ls~r~v~e~l~~rg--i~v~h~Ti~rwv~k~~~~~----------~~~~~~r-----~----   66 (215)
T COG3316           8 QFPRNIIAVAVWLYLRYGLSLRDVEEMLAERG--IEVDHETIHRWVQKYGPLL----------ARRLKRR-----K----   66 (215)
T ss_pred             hcchhhHHHHHHHHhhcchhhccHHHHHHHcC--cchhHHHHHHHHHHHhHHH----------HHHhhhh-----c----
Confidence            3344445555555655 888888888888874  4466777887777653221          1111110     0    


Q ss_pred             CCCceeeEEeeChhhHHHHhhCCCEEEeeccccccCCCC-ceeeEEEeeccCcEEEEEEEeecccccchHHHHHHHHHHH
Q 039425           98 DTNCVEALFLAHPSAIESLQAFPRVLIMDCTYQTNRYDM-PLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALERLKSI  176 (413)
Q Consensus        98 ~~~~~~~l~~~~~~~~~~~~~~~~vl~iD~Ty~tn~~~~-~l~~~~g~~~~g~~~~~~~~~~~~E~~~~~~~~l~~l~~~  176 (413)
                                         +.-.+.+.+|-||-+.+.+. -|+-+  +|.+|  .++.+.+...-+...=..||..+++.
T Consensus        67 -------------------~~~~~~w~vDEt~ikv~gkw~ylyrA--id~~g--~~Ld~~L~~rRn~~aAk~Fl~kllk~  123 (215)
T COG3316          67 -------------------RKAGDSWRVDETYIKVNGKWHYLYRA--IDADG--LTLDVWLSKRRNALAAKAFLKKLLKK  123 (215)
T ss_pred             -------------------cccccceeeeeeEEeeccEeeehhhh--hccCC--CeEEEEEEcccCcHHHHHHHHHHHHh
Confidence                               01145788898986655443 34444  45554  45667766665555555566666665


Q ss_pred             HhccccceEEEeccchHHHHHHHHhCCcccc
Q 039425          177 MEENMLASVIVTDRELALMTVIQKHFPSATT  207 (413)
Q Consensus       177 ~~~~~~p~~iitD~~~al~~Ai~~vfP~a~~  207 (413)
                         ...|.+|+||+......|++++-++..|
T Consensus       124 ---~g~p~v~vtDka~s~~~A~~~l~~~~eh  151 (215)
T COG3316         124 ---HGEPRVFVTDKAPSYTAALRKLGSEVEH  151 (215)
T ss_pred             ---cCCCceEEecCccchHHHHHhcCcchhe
Confidence               3899999999999999999999885433

>PRK08561 rps15p 30S ribosomal protein S15P; Reviewed

Probab=84.11  E-value=3.9  Score=34.46  Aligned_cols=38  Identities=18%  Similarity=0.130  Sum_probs=30.5

Q ss_pred             ccccCCCCCHH-HHHHHHHHHhCCCChHHHHHHHHhcCC
Q 039425           13 GHSFAGILNKE-KSNLLVDMSKNNVRPKDILHVLKKRNM   50 (413)
Q Consensus        13 ~hp~~rrlt~~-~~~~i~~L~~~g~~~~~I~~~l~~~~~   50 (413)
                      ..|..-.++++ ..+.|.+|...|++|++|--.|++++|
T Consensus        21 ~~P~W~~~~~eeve~~I~~lakkG~~pSqIG~~LRD~~g   59 (151)
T PRK08561         21 EPPEWVDYSPEEIEELVVELAKQGYSPSMIGIILRDQYG   59 (151)
T ss_pred             CCCccccCCHHHHHHHHHHHHHCCCCHHHhhhhHhhccC
Confidence            34544555544 578899999999999999999999995

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	413
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.5 bits (117), Expect = 2e-06
 Identities = 68/427 (15%), Positives = 131/427 (30%), Gaps = 100/427 (23%)

Query: 6   ILLHNLEGHSFAGILNKEKSNLLVDMSKNNVRPKDILHVLKKRNMHNATTIRAIYNARRK 65
           IL    +  +F    +      + DM K+ +  ++I H++  ++  + T         R 
Sbjct: 21  ILSVFED--AFVDNFD---CKDVQDMPKSILSKEEIDHIIMSKDAVSGT--------LRL 67

Query: 66  YKVREQAGHSQMQLLMSKLIEHKYIERHKSDVDTNCVEALFLAHPSAIESLQAFPRVLIM 125
           +          +Q  + +++   Y                FL  P   E  Q  P ++  
Sbjct: 68  FWTLLSKQEEMVQKFVEEVLRINYK---------------FLMSPIKTEQRQ--PSMMTR 110

Query: 126 DCTYQTNRY--DMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALERLKS---IMEEN 180
               Q +R   D  +     V+ +         YLKL+       AL  L+    ++ + 
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQP-------YLKLRQ------ALLELRPAKNVLIDG 157

Query: 181 MLA---SVIVTDRELALMTV----IQKHFPSATTFLCRWYISRNVLVNCKN----LFEAN 229
           +L    +       +AL       +Q        F   W ++   L NC +    L    
Sbjct: 158 VLGSGKTW------VALDVCLSYKVQCKMD----FKIFW-LN---LKNCNSPETVLEMLQ 203

Query: 230 EIWQTFISSWNLLILSASE-----EEFAQRLKG--METDFSKYLIALTYIRNVWLDKYKD 282
           ++      +W      +S            L+       +   L+ L    NV   K  +
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL---LNVQNAKAWN 260

Query: 283 KF-------VSAWTNSVMHFRNIKASLERSLTMVQHDFKLLIFKELRGFVATNALTMILD 335
            F       ++     V  F +   +   SL    H    L   E++  +         D
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISL---DHHSMTLTPDEVKSLLLKYLDCRPQD 317

Query: 336 ESRRVDSLGPDVFA-CGCIIRHTHGLPRAPEITEYKREEIEMIVKRFNDSDDLAKVQLLR 394
             R V +  P   +     IR   GL           +++  I++   +  + A     R
Sbjct: 318 LPREVLTTNPRRLSIIAESIR--DGLATWDNWKHVNCDKLTTIIESSLNVLEPA---EYR 372

Query: 395 KL-KELA 400
           K+   L+
Sbjct: 373 KMFDRLS 379

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	413
3hot_A	345	Transposable element mariner, complete CDS; protei	91.85

>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*

Probab=91.85  E-value=4.1  Score=37.99  Aligned_cols=47  Identities=9%  Similarity=0.068  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHhCCCChHHHHHHHHhcCCCCCcchhhHHHHHHHhhh
Q 039425           22 KEKSNLLVDMSKNNVRPKDILHVLKKRNMHNATTIRAIYNARRKYKV   68 (413)
Q Consensus        22 ~~~~~~i~~L~~~g~~~~~I~~~l~~~~~~~~~t~~di~n~~~~~~~   68 (413)
                      .+.+..|..+...|.+.++|...|.+.+|...++.+.|++..++.+.
T Consensus         9 ~~~R~~i~~~~~~G~s~~~~~~~l~~~~g~~~vs~~tv~~w~~r~~~   55 (345)
T 3hot_A            9 EQTRTVLIFCFHLKKTAAESHRMLVEAFGEQVPTVKTCERWFQRFKS   55 (345)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHTCSCSCCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhC
Confidence            35677888899999999999999999998666889999999888664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	413
d1ijwc_	47	HIN recombinase (DNA-binding domain) {Synthetic}	88.97

>d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Recombinase DNA-binding domain
domain: HIN recombinase (DNA-binding domain)
species: Synthetic

Probab=88.97  E-value=0.28  Score=30.32  Aligned_cols=38  Identities=8%  Similarity=0.232  Sum_probs=30.4

Q ss_pred             CCCCHHHHHHHHHHHhCCCChHHHHHHHHhcCCCCCcchhhHHHH
Q 039425           18 GILNKEKSNLLVDMSKNNVRPKDILHVLKKRNMHNATTIRAIYNA   62 (413)
Q Consensus        18 rrlt~~~~~~i~~L~~~g~~~~~I~~~l~~~~~~~~~t~~di~n~   62 (413)
                      +.||+++.+.+..|.++|.+..+|...+-       ++...||+.
T Consensus         4 ~~lt~~q~~~a~~l~~~G~s~~~iA~~~g-------VSr~TiYry   41 (47)
T d1ijwc_           4 RAINKHEQEQISRLLEKGHPRQQLAIIFG-------IGVSTLYRY   41 (47)
T ss_dssp             CSSCHHHHHHHHHHHHTTCCHHHHHHHHT-------CCHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHCCCCHHHHHHHHC-------cCHHHHHhh
Confidence            67999999999999999999998887642       345556654