Citrus Sinensis ID: 039461

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70------
Protein Sequence
GDLTGTAAVKLWVDERPKYNYNSNTCVGGECRHYTQVVWRNSVRLGCARVKCNNNRGTFVICSYDPPGNVAGKRPY
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHccccccccccccccccccccEEEEEccccEEEEEEEEccccccEEEEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHcccccccccccccccEEEEEEEccEEEEEEEEEEccccEEEEEEEccccccccccccc
Coil and Loop (DISEMBL)
GDLTGTAAVKLWvderpkynynsntcvggecrHYTQVVWRNSVRLGCarvkcnnnrgtfvicsydppgnvagkrpy
Flexible Loop (DISEMBL)
gdltgtaavklwvderpkynynsntcvggecRHYTQVVWRNSVRLGCARVKcnnnrgtfvicsydppgnvagkrpy
Low Complexity Region (SEG)
GDLTGTAAVKLWVDERPKYNYNSNTCVGGECRHYTQVVWRNSVRLGCARVKCNNNRGTFVICSYDPPGNVAGKRPY
Disordered region (IsUnstruct)
*****TAAVKLWVDERPKYNYNSNTCVGGECRHYTQVVWRNSVRLGCARVKCNNNRGTFVICSYD***********
Disordered Region (DISOPRED)
**LTGTAAVKLWVDERPKYNYNSNTCVGGECRHYTQVVWRNSVRLGCARVKCNNNRGTFVICSYDPPGNVAG*RPY
Disordered Region (DISEMBL)
GDLTGTAAVKLWVDERPKYNYNSNTCVGGECRHYTQVVWRNSVRLGCARVKCNNNRGTFVICSYDPPGNVAGKRPY
Disordered Region (DISPRO)
*DLTGTAAVKLWVDERPKYNYNSNTCVGGECRHYTQVVWRNSVRLGCARVKCNNNRGTFVICSYDPPGNVAG****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
GDLTGTAAVKLWVDERPKYNYNSNTCVGGECRHYTQVVWRNSVRLGCARVKCNNNRGTFVICSYDPPGNVAGKRPY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	76	2.2.26 [Sep-21-2011]
P04284	159	Pathogenesis-related leaf	N/A	no	0.986	0.471	0.688	5e-24
P11670	177	Basic form of pathogenesi	N/A	no	0.973	0.418	0.653	4e-23
Q04108	159	Pathogenesis-related leaf	N/A	no	0.986	0.471	0.675	4e-23
P07053	168	Pathogenesis-related prot	N/A	no	0.960	0.434	0.64	5e-22
P09042	168	Pathogenesis-related prot	N/A	no	0.960	0.434	0.64	2e-21
Q41359	167	Pathogenesis-related prot	N/A	no	0.973	0.443	0.644	8e-21
P08299	168	Pathogenesis-related prot	N/A	no	0.960	0.434	0.613	1e-20
P35792	164	Pathogenesis-related prot	N/A	no	1.0	0.463	0.571	2e-20
P35793	164	Pathogenesis-related prot	N/A	no	1.0	0.463	0.558	3e-20
P33154	161	Pathogenesis-related prot	no	no	0.973	0.459	0.605	4e-20

>sp|P04284|PR06_SOLLC Pathogenesis-related leaf protein 6 OS=Solanum lycopersicum GN=PR1B1 PE=1 SV=2

 Score =  109 bits (272), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 53/77 (68%), Positives = 60/77 (77%), Gaps = 2/77 (2%)

Query: 1   GDLTGTAAVKLWVDERPKYNYNSNTCVGGE-CRHYTQVVWRNSVRLGCARVKCNNNRGTF 59
           GD TG AAV+LWV ERP YNY +N CVGG+ CRHYTQVVWRNSVRLGC R +CNN    F
Sbjct: 84  GDFTGRAAVQLWVSERPSYNYATNQCVGGKKCRHYTQVVWRNSVRLGCGRARCNNGW-WF 142

Query: 60  VICSYDPPGNVAGKRPY 76
           + C+YDP GN  G+RPY
Sbjct: 143 ISCNYDPVGNWIGQRPY 159

Probably involved in the defense reaction of plants against pathogens. Has antifungal activity.
Solanum lycopersicum (taxid: 4081)

>sp|P11670|PRB1_TOBAC Basic form of pathogenesis-related protein 1 OS=Nicotiana tabacum PE=3 SV=1

 Score =  106 bits (265), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 49/75 (65%), Positives = 58/75 (77%), Gaps = 1/75 (1%)

Query: 2   DLTGTAAVKLWVDERPKYNYNSNTCVGGECRHYTQVVWRNSVRLGCARVKCNNNRGTFVI 61
            L    AVK+WVDE+  Y+YNSN+CVGG C HYTQVVWRNSVRLGCARV+ NN    F+ 
Sbjct: 86  QLNAAGAVKMWVDEKRFYDYNSNSCVGGVCGHYTQVVWRNSVRLGCARVRSNNGW-FFIT 144

Query: 62  CSYDPPGNVAGKRPY 76
           C+YDPPGN  G+RP+
Sbjct: 145 CNYDPPGNFIGQRPF 159

Probably involved in the defense reaction of plants against pathogens.

Nicotiana tabacum (taxid: 4097)

>sp|Q04108|PR04_SOLLC Pathogenesis-related leaf protein 4 OS=Solanum lycopersicum PE=2 SV=1

 Score =  106 bits (264), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 52/77 (67%), Positives = 59/77 (76%), Gaps = 2/77 (2%)

Query: 1   GDLTGTAAVKLWVDERPKYNYNSNTCVGGE-CRHYTQVVWRNSVRLGCARVKCNNNRGTF 59
           GD TG AAV+LWV ERP YNY +N CVGG+ C HYTQVVWRNSVRLGC R +CNN    F
Sbjct: 84  GDFTGRAAVQLWVSERPDYNYATNQCVGGKMCGHYTQVVWRNSVRLGCGRARCNNGW-WF 142

Query: 60  VICSYDPPGNVAGKRPY 76
           + C+YDP GN  G+RPY
Sbjct: 143 ISCNYDPVGNWVGERPY 159

Probably involved in the defense reaction of plants against pathogens.

Solanum lycopersicum (taxid: 4081)

>sp|P07053|PR1B_TOBAC Pathogenesis-related protein 1B OS=Nicotiana tabacum PE=2 SV=1

 Score =  103 bits (256), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 48/75 (64%), Positives = 59/75 (78%), Gaps = 2/75 (2%)

Query: 3   LTGTAAVKLWVDERPKYNYNSNTCVGGE-CRHYTQVVWRNSVRLGCARVKCNNNRGTFVI 61
           +T   AV++WVDE+  Y+++SNTC  G+ C HYTQVVWRNSVR+GCARVKCNN  G  V 
Sbjct: 95  MTAAKAVEMWVDEKQYYDHDSNTCAQGQVCGHYTQVVWRNSVRVGCARVKCNNG-GYVVS 153

Query: 62  CSYDPPGNVAGKRPY 76
           C+YDPPGNV G+ PY
Sbjct: 154 CNYDPPGNVIGQSPY 168

Probably involved in the defense reaction of plants against pathogens.

Nicotiana tabacum (taxid: 4097)

>sp|P09042|PR1C_TOBAC Pathogenesis-related protein 1C OS=Nicotiana tabacum PE=2 SV=3

 Score =  100 bits (250), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 48/75 (64%), Positives = 58/75 (77%), Gaps = 2/75 (2%)

Query: 3   LTGTAAVKLWVDERPKYNYNSNTCVGGE-CRHYTQVVWRNSVRLGCARVKCNNNRGTFVI 61
           LT   AV++WV+E+  Y ++SNTC  G+ C HYTQVVWRNSVR+GCARV+CNN  G  V 
Sbjct: 95  LTAAKAVEMWVNEKQYYAHDSNTCAQGQVCGHYTQVVWRNSVRVGCARVQCNNG-GYIVS 153

Query: 62  CSYDPPGNVAGKRPY 76
           C+YDPPGNV GK PY
Sbjct: 154 CNYDPPGNVIGKSPY 168

Probably involved in the defense reaction of plants against pathogens.

Nicotiana tabacum (taxid: 4097)

>sp|Q41359|PR1_SAMNI Pathogenesis-related protein PR-1 type OS=Sambucus nigra PE=2 SV=1

 Score = 99.0 bits (245), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 49/76 (64%), Positives = 58/76 (76%), Gaps = 2/76 (2%)

Query: 2   DLTGTAAVKLWVDERPKYNYNSNTCVGGE-CRHYTQVVWRNSVRLGCARVKCNNNRGTFV 60
           +LTG  AV +WV ER  YN N+NTC  G+ C HYTQVVWRNSVR+GCARV+CNN    F+
Sbjct: 93  ELTGRNAVDMWVAERNDYNPNTNTCAPGKVCGHYTQVVWRNSVRIGCARVRCNNG-AWFI 151

Query: 61  ICSYDPPGNVAGKRPY 76
            C+Y PPGN AG+RPY
Sbjct: 152 TCNYSPPGNYAGQRPY 167

Probably involved in the defense reaction of plants against pathogens.

Sambucus nigra (taxid: 4202)

>sp|P08299|PR1A_TOBAC Pathogenesis-related protein 1A OS=Nicotiana tabacum PE=1 SV=1

 Score = 98.6 bits (244), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 46/75 (61%), Positives = 58/75 (77%), Gaps = 2/75 (2%)

Query: 3   LTGTAAVKLWVDERPKYNYNSNTCVGGE-CRHYTQVVWRNSVRLGCARVKCNNNRGTFVI 61
           +T   AV++WVDE+  Y+++SNTC  G+ C HYTQVVWRNSVR+GCARV+CNN  G  V 
Sbjct: 95  MTAAKAVEMWVDEKQYYDHDSNTCAQGQVCGHYTQVVWRNSVRVGCARVQCNNG-GYVVS 153

Query: 62  CSYDPPGNVAGKRPY 76
           C+YDPPGN  G+ PY
Sbjct: 154 CNYDPPGNYRGESPY 168

Probably involved in the defense reaction of plants against pathogens.

Nicotiana tabacum (taxid: 4097)

>sp|P35792|PR12_HORVU Pathogenesis-related protein PRB1-2 OS=Hordeum vulgare PE=2 SV=1

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 44/77 (57%), Positives = 54/77 (70%), Gaps = 1/77 (1%)

Query: 1   GDLTGTAAVKLWVDERPKYNYNSNTCVGGE-CRHYTQVVWRNSVRLGCARVKCNNNRGTF 59
            D     AV  WV+E+  YNY SNTC  G+ C HYTQVVWR S  +GCARV CNNNRG F
Sbjct: 88  ADWKAADAVNSWVNEKKDYNYGSNTCAAGKVCGHYTQVVWRASTSIGCARVVCNNNRGVF 147

Query: 60  VICSYDPPGNVAGKRPY 76
           + C+Y+P GN+ G++PY
Sbjct: 148 ITCNYEPRGNIVGQKPY 164

Probably involved in the defense reaction of plants against pathogens.

Hordeum vulgare (taxid: 4513)

>sp|P35793|PR13_HORVU Pathogenesis-related protein PRB1-3 OS=Hordeum vulgare PE=2 SV=1

 Score = 97.1 bits (240), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 43/77 (55%), Positives = 54/77 (70%), Gaps = 1/77 (1%)

Query: 1   GDLTGTAAVKLWVDERPKYNYNSNTCVGGE-CRHYTQVVWRNSVRLGCARVKCNNNRGTF 59
            D   + AV  WV E+  Y+Y SNTC  G+ C HYTQVVWR S  +GCARV CNNNRG F
Sbjct: 88  ADWKASDAVNSWVSEKKDYDYGSNTCAAGKVCGHYTQVVWRASTSIGCARVVCNNNRGVF 147

Query: 60  VICSYDPPGNVAGKRPY 76
           + C+Y+P GN+ G++PY
Sbjct: 148 ITCNYEPRGNIVGQKPY 164

Probably involved in the defense reaction of plants against pathogens.

Hordeum vulgare (taxid: 4513)

>sp|P33154|PR1_ARATH Pathogenesis-related protein 1 OS=Arabidopsis thaliana GN=At2g14610 PE=1 SV=1

 Score = 96.7 bits (239), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 46/76 (60%), Positives = 57/76 (75%), Gaps = 2/76 (2%)

Query: 1   GDLTGTAAVKLWVDERPKYNYNSNTCVGGECRHYTQVVWRNSVRLGCARVKCNNNRGTFV 60
           GDL+G +AV +WV E+  YNY +NTC  G C HYTQVVWR SVRLGCA+V+CNN  GT +
Sbjct: 88  GDLSGVSAVNMWVSEKANYNYAANTC-NGVCGHYTQVVWRKSVRLGCAKVRCNNG-GTII 145

Query: 61  ICSYDPPGNVAGKRPY 76
            C+YDP GN   ++PY
Sbjct: 146 SCNYDPRGNYVNEKPY 161

Partially responsible for acquired pathogen resistance.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	76
311120208	161	pathogenesis related protein-1 [Populus	0.986	0.465	0.776	1e-28
224060957	161	predicted protein [Populus trichocarpa]	0.986	0.465	0.763	3e-28
357471443	855	Maturase K [Medicago truncatula] gi|3555	0.973	0.086	0.666	1e-27
356554884	165	PREDICTED: basic form of pathogenesis-re	0.986	0.454	0.736	6e-27
224060951	161	predicted protein [Populus trichocarpa]	0.986	0.465	0.706	2e-26
356554880	164	PREDICTED: basic form of pathogenesis-re	0.986	0.457	0.723	3e-26
297736370	163	unnamed protein product [Vitis vinifera]	0.986	0.460	0.75	4e-26
356549447	174	PREDICTED: basic form of pathogenesis-re	0.986	0.431	0.697	6e-26
307340533	160	pathogenesis-related protein 1 [Vitis sh	0.986	0.468	0.75	7e-26
307340507	160	pathogenesis-related protein 1 [Vitis hy	0.986	0.468	0.75	7e-26

>gi|311120208|gb|ADP69172.1| pathogenesis related protein-1 [Populus tomentosa]

 Score =  130 bits (326), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 59/76 (77%), Positives = 68/76 (89%), Gaps = 1/76 (1%)

Query: 1   GDLTGTAAVKLWVDERPKYNYNSNTCVGGECRHYTQVVWRNSVRLGCARVKCNNNRGTFV 60
           GDLTG+AAVKLWVDE+PKY+YNSN+CVGGECRHYTQVVWRNSVRLGCA+ KC+N  GT +
Sbjct: 87  GDLTGSAAVKLWVDEKPKYDYNSNSCVGGECRHYTQVVWRNSVRLGCAKAKCSNG-GTVI 145

Query: 61  ICSYDPPGNVAGKRPY 76
            C+Y PPGN  G+RPY
Sbjct: 146 SCNYSPPGNYVGQRPY 161

Source: Populus tomentosa

Species: Populus tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060957|ref|XP_002300294.1| predicted protein [Populus trichocarpa] gi|224105869|ref|XP_002333756.1| predicted protein [Populus trichocarpa] gi|222838424|gb|EEE76789.1| predicted protein [Populus trichocarpa] gi|222847552|gb|EEE85099.1| predicted protein [Populus trichocarpa]

 Score =  129 bits (323), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 58/76 (76%), Positives = 68/76 (89%), Gaps = 1/76 (1%)

Query: 1   GDLTGTAAVKLWVDERPKYNYNSNTCVGGECRHYTQVVWRNSVRLGCARVKCNNNRGTFV 60
           GDLTG+AAVKLWVDE+PKY+YNSN+CVGGECRHYTQVVWRNSVRLGCA+ +C+N  GT +
Sbjct: 87  GDLTGSAAVKLWVDEKPKYDYNSNSCVGGECRHYTQVVWRNSVRLGCAKARCSNG-GTVI 145

Query: 61  ICSYDPPGNVAGKRPY 76
            C+Y PPGN  G+RPY
Sbjct: 146 SCNYSPPGNYVGQRPY 161

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357471443|ref|XP_003606006.1| Maturase K [Medicago truncatula] gi|355507061|gb|AES88203.1| Maturase K [Medicago truncatula]

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 50/75 (66%), Positives = 64/75 (85%), Gaps = 1/75 (1%)

Query: 1   GDLTGTAAVKLWVDERPKYNYNSNTCVGGE-CRHYTQVVWRNSVRLGCARVKCNNNRGTF 59
           GD++G+ AVKLWV+E+  YNYNSNTC  G+ C HYTQVVWRNS R+GCA+V+C+NNRGTF
Sbjct: 416 GDMSGSDAVKLWVNEKADYNYNSNTCASGKVCGHYTQVVWRNSQRVGCAKVRCDNNRGTF 475

Query: 60  VICSYDPPGNVAGKR 74
           + C+YDPPGN  G++
Sbjct: 476 ITCNYDPPGNYVGEK 490

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554884|ref|XP_003545772.1| PREDICTED: basic form of pathogenesis-related protein 1-like [Glycine max]

 Score =  124 bits (312), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 56/76 (73%), Positives = 67/76 (88%), Gaps = 1/76 (1%)

Query: 1   GDLTGTAAVKLWVDERPKYNYNSNTCVGGECRHYTQVVWRNSVRLGCARVKCNNNRGTFV 60
           G+L+GT AVKLWVDE+ KY+YNSNTCVGGECRHYTQVVW+NSVRLGC +V+C+N  GTF+
Sbjct: 91  GNLSGTNAVKLWVDEKSKYDYNSNTCVGGECRHYTQVVWKNSVRLGCGKVRCDNG-GTFI 149

Query: 61  ICSYDPPGNVAGKRPY 76
            C+Y PPGN  G+RPY
Sbjct: 150 TCNYAPPGNYVGQRPY 165

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060951|ref|XP_002300292.1| predicted protein [Populus trichocarpa] gi|222847550|gb|EEE85097.1| predicted protein [Populus trichocarpa]

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 53/75 (70%), Positives = 63/75 (84%)

Query: 2   DLTGTAAVKLWVDERPKYNYNSNTCVGGECRHYTQVVWRNSVRLGCARVKCNNNRGTFVI 61
           DL GT AVK+WVDER  Y+YNSN+CVGG+C HYTQVVWRNSVRLGCA+V+CNN  GT + 
Sbjct: 87  DLAGTGAVKMWVDERANYDYNSNSCVGGQCLHYTQVVWRNSVRLGCAKVRCNNGAGTLIS 146

Query: 62  CSYDPPGNVAGKRPY 76
           C+YDPPGN   +RP+
Sbjct: 147 CNYDPPGNYNDQRPF 161

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554880|ref|XP_003545770.1| PREDICTED: basic form of pathogenesis-related protein 1-like [Glycine max]

 Score =  122 bits (306), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 55/76 (72%), Positives = 65/76 (85%), Gaps = 1/76 (1%)

Query: 1   GDLTGTAAVKLWVDERPKYNYNSNTCVGGECRHYTQVVWRNSVRLGCARVKCNNNRGTFV 60
           GDL+GT AVKLWVDE+  Y+YNSN+CVGGEC HYTQVVWR+SVRLGCA+V C+N  GTF+
Sbjct: 90  GDLSGTDAVKLWVDEKSNYDYNSNSCVGGECLHYTQVVWRDSVRLGCAKVACDNG-GTFI 148

Query: 61  ICSYDPPGNVAGKRPY 76
            C+Y PPGN  G+RPY
Sbjct: 149 TCNYAPPGNYVGQRPY 164

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736370|emb|CBI25093.3| unnamed protein product [Vitis vinifera]

 Score =  121 bits (304), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 57/76 (75%), Positives = 64/76 (84%), Gaps = 1/76 (1%)

Query: 1   GDLTGTAAVKLWVDERPKYNYNSNTCVGGECRHYTQVVWRNSVRLGCARVKCNNNRGTFV 60
           G LTGT AV LWV E+P Y+YNSN+CVGG+C HYTQVVWRNSVRLGCARV+CNN  G FV
Sbjct: 89  GSLTGTDAVNLWVGEKPNYDYNSNSCVGGKCGHYTQVVWRNSVRLGCARVQCNNG-GWFV 147

Query: 61  ICSYDPPGNVAGKRPY 76
            C+YDPPGN  G+RPY
Sbjct: 148 TCNYDPPGNYVGQRPY 163

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549447|ref|XP_003543105.1| PREDICTED: basic form of pathogenesis-related protein 1-like [Glycine max] gi|356549451|ref|XP_003543107.1| PREDICTED: basic form of pathogenesis-related protein 1-like isoform 1 [Glycine max] gi|356549453|ref|XP_003543108.1| PREDICTED: basic form of pathogenesis-related protein 1-like isoform 2 [Glycine max] gi|356549455|ref|XP_003543109.1| PREDICTED: basic form of pathogenesis-related protein 1-like isoform 1 [Glycine max] gi|356549457|ref|XP_003543110.1| PREDICTED: basic form of pathogenesis-related protein 1-like isoform 2 [Glycine max] gi|356549459|ref|XP_003543111.1| PREDICTED: basic form of pathogenesis-related protein 1-like [Glycine max] gi|255630250|gb|ACU15480.1| unknown [Glycine max]

 Score =  121 bits (303), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 53/76 (69%), Positives = 65/76 (85%), Gaps = 1/76 (1%)

Query: 1   GDLTGTAAVKLWVDERPKYNYNSNTCVGGECRHYTQVVWRNSVRLGCARVKCNNNRGTFV 60
           G+L+GT AVK+WVDE+  Y+Y+SN+CVGGEC HYTQVVW NSVRLGCA+V C+N  GTF+
Sbjct: 98  GELSGTDAVKMWVDEKSNYDYDSNSCVGGECLHYTQVVWANSVRLGCAKVTCDNG-GTFI 156

Query: 61  ICSYDPPGNVAGKRPY 76
            C+YDPPGN  G+RPY
Sbjct: 157 TCNYDPPGNFVGERPY 172

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307340533|gb|ADN43428.1| pathogenesis-related protein 1 [Vitis shuttleworthii]

 Score =  120 bits (302), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 57/76 (75%), Positives = 64/76 (84%), Gaps = 1/76 (1%)

Query: 1   GDLTGTAAVKLWVDERPKYNYNSNTCVGGECRHYTQVVWRNSVRLGCARVKCNNNRGTFV 60
           G LTGT AV LWV E+P Y+YNSN+CVGG+C HYTQVVWRNSVRLGCARV+CNN  G FV
Sbjct: 86  GSLTGTDAVNLWVGEKPNYDYNSNSCVGGKCGHYTQVVWRNSVRLGCARVQCNNG-GWFV 144

Query: 61  ICSYDPPGNVAGKRPY 76
            C+YDPPGN  G+RPY
Sbjct: 145 TCNYDPPGNYVGQRPY 160

Source: Vitis shuttleworthii

Species: Vitis shuttleworthii

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307340507|gb|ADN43415.1| pathogenesis-related protein 1 [Vitis hybrid cultivar]

 Score =  120 bits (302), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 57/76 (75%), Positives = 64/76 (84%), Gaps = 1/76 (1%)

Query: 1   GDLTGTAAVKLWVDERPKYNYNSNTCVGGECRHYTQVVWRNSVRLGCARVKCNNNRGTFV 60
           G LTGT AV LWV E+P Y+YNSN+CVGG+C HYTQVVWRNSVRLGCARV+CNN  G FV
Sbjct: 86  GSLTGTDAVDLWVGEKPNYDYNSNSCVGGKCGHYTQVVWRNSVRLGCARVQCNNG-GWFV 144

Query: 61  ICSYDPPGNVAGKRPY 76
            C+YDPPGN  G+RPY
Sbjct: 145 TCNYDPPGNYVGQRPY 160

Source: Vitis hybrid cultivar

Species: Vitis hybrid cultivar

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	76
TAIR|locus:2055240	161	PRB1 "AT2G14580" [Arabidopsis	0.973	0.459	0.671	2.5e-26
TAIR|locus:2134178	163	AT4G33720 "AT4G33720" [Arabido	0.986	0.460	0.623	6.8e-24
TAIR|locus:2064294	161	PR1 "AT2G14610" [Arabidopsis t	0.973	0.459	0.605	2.3e-23
TAIR|locus:2005537	176	PR-1-LIKE "AT2G19990" [Arabido	1.0	0.431	0.584	4.8e-23
TAIR|locus:2134283	166	AT4G33710 "AT4G33710" [Arabido	0.986	0.451	0.610	7.8e-23
TAIR|locus:2091196	161	AT3G19690 "AT3G19690" [Arabido	0.986	0.465	0.531	4.3e-22
TAIR|locus:2117547	210	AT4G25790 "AT4G25790" [Arabido	0.986	0.357	0.565	1.5e-21
TAIR|locus:2180662	166	AT5G26130 "AT5G26130" [Arabido	0.986	0.451	0.610	1.9e-21
TAIR|locus:2134193	172	AT4G33730 "AT4G33730" [Arabido	0.986	0.436	0.539	1e-20
TAIR|locus:2031055	161	AT1G50060 "AT1G50060" [Arabido	0.907	0.428	0.605	1.7e-20

TAIR|locus:2055240 PRB1 "AT2G14580" [Arabidopsis thaliana (taxid:3702)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 51/76 (67%), Positives = 62/76 (81%)

Query:     1 GDLTGTAAVKLWVDERPKYNYNSNTCVGGECRHYTQVVWRNSVRLGCARVKCNNNRGTFV 60
             GDL+G AAV LWV+E+  YNY++NTC  G C HYTQVVWRNSVRLGCA+V+CNN  GT +
Sbjct:    88 GDLSGVAAVNLWVNEKANYNYDTNTC-NGVCGHYTQVVWRNSVRLGCAKVRCNNG-GTII 145

Query:    61 ICSYDPPGNVAGKRPY 76
              C+YDPPGN A ++PY
Sbjct:   146 SCNYDPPGNYANQKPY 161

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM;IEA;ISS

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

TAIR|locus:2134178 AT4G33720 "AT4G33720" [Arabidopsis thaliana (taxid:3702)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 48/77 (62%), Positives = 60/77 (77%)

Query:     1 GDLTGTAAVKLWVDERPKYNYNSNTCVGG-ECRHYTQVVWRNSVRLGCARVKCNNNRGTF 59
             G +TG AAV +WVDE+  Y+Y+SNTC    +C HYTQVVWRNS RLGCA+V+CNN + TF
Sbjct:    88 GSMTGVAAVDMWVDEQFDYDYDSNTCAWDKQCGHYTQVVWRNSERLGCAKVRCNNGQ-TF 146

Query:    60 VICSYDPPGNVAGKRPY 76
             + C+YDPPGN  G+ PY
Sbjct:   147 ITCNYDPPGNWVGEWPY 163

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM;IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2064294 PR1 "AT2G14610" [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 46/76 (60%), Positives = 57/76 (75%)

Query:     1 GDLTGTAAVKLWVDERPKYNYNSNTCVGGECRHYTQVVWRNSVRLGCARVKCNNNRGTFV 60
             GDL+G +AV +WV E+  YNY +NTC  G C HYTQVVWR SVRLGCA+V+CNN  GT +
Sbjct:    88 GDLSGVSAVNMWVSEKANYNYAANTC-NGVCGHYTQVVWRKSVRLGCAKVRCNNG-GTII 145

Query:    61 ICSYDPPGNVAGKRPY 76
              C+YDP GN   ++PY
Sbjct:   146 SCNYDPRGNYVNEKPY 161

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM;ISS

GO:0009627 "systemic acquired resistance" evidence=IEP;RCA

GO:0005618 "cell wall" evidence=IDA

GO:0010266 "response to vitamin B1" evidence=IEP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0009414 "response to water deprivation" evidence=IEP

GO:0006952 "defense response" evidence=TAS

TAIR|locus:2005537 PR-1-LIKE "AT2G19990" [Arabidopsis thaliana (taxid:3702)]

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 45/77 (58%), Positives = 58/77 (75%)

Query:     1 GDLTGTAAVKLWVDERPKYNYNSNTCVG-GECRHYTQVVWRNSVRLGCARVKCNNNRGTF 59
             G ++G  A + W+ E+  Y+Y+SNTC G G C HYTQ+VWR+SVRLGCA V+C N+   +
Sbjct:   100 GTMSGPVATEYWMTEKENYDYDSNTCGGDGVCGHYTQIVWRDSVRLGCASVRCKNDEYIW 159

Query:    60 VICSYDPPGNVAGKRPY 76
             VICSYDPPGN  G+RPY
Sbjct:   160 VICSYDPPGNYIGQRPY 176

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM;IEA;ISS

GO:0042742 "defense response to bacterium" evidence=IEP

TAIR|locus:2134283 AT4G33710 "AT4G33710" [Arabidopsis thaliana (taxid:3702)]

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 47/77 (61%), Positives = 59/77 (76%)

Query:     1 GDLTGTAAVKLWVDERPKYNYNSNTC-VGGECRHYTQVVWRNSVRLGCARVKCNNNRGTF 59
             GD++G AAV+LWV E+  Y + SNTC  G +C HYTQVVW+NS  +GCA+VKC+N  GTF
Sbjct:    91 GDMSGAAAVRLWVREKSDYFHKSNTCRAGKQCGHYTQVVWKNSEWVGCAKVKCDNG-GTF 149

Query:    60 VICSYDPPGNVAGKRPY 76
             V C+Y  PGNV G+RPY
Sbjct:   150 VTCNYSHPGNVRGRRPY 166

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM;IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2091196 AT3G19690 "AT3G19690" [Arabidopsis thaliana (taxid:3702)]

 Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
 Identities = 42/79 (53%), Positives = 61/79 (77%)

Query:     1 GDLTGTAAVKLWVDERPKYNYNSNTCV---GGECRHYTQVVWRNSVRLGCARVKCNNNRG 57
             G+++   A ++W++E+  Y+Y+SNTC    GG C HYTQVVW+N+VRLGCA+V CN+  G
Sbjct:    84 GEMSAEDAAEMWINEKQYYDYDSNTCNDPNGGTCLHYTQVVWKNTVRLGCAKVVCNSG-G 142

Query:    58 TFVICSYDPPGNVAGKRPY 76
             TF+ C+YDPPGN  G++P+
Sbjct:   143 TFITCNYDPPGNYIGEKPF 161

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM;IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2117547 AT4G25790 "AT4G25790" [Arabidopsis thaliana (taxid:3702)]

 Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 43/76 (56%), Positives = 52/76 (68%)

Query:     2 DLTGTAAVKLWVDERPKYNYNSNTCVG-GECRHYTQVVWRNSVRLGCARVKCNNNRGTFV 60
             D T T AV+ W  E   YN+ +NTC G G C HYTQ+VWR + RLGCARV C N  G F+
Sbjct:   135 DFTSTFAVESWTVEAKSYNHMTNTCEGDGMCGHYTQIVWRETRRLGCARVVCENGAGVFI 194

Query:    61 ICSYDPPGNVAGKRPY 76
              C+YDPPGN  G++PY
Sbjct:   195 TCNYDPPGNYVGEKPY 210

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM;IEA;ISS

GO:0008150 "biological_process" evidence=ND

GO:0010054 "trichoblast differentiation" evidence=RCA

TAIR|locus:2180662 AT5G26130 "AT5G26130" [Arabidopsis thaliana (taxid:3702)]

 Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 47/77 (61%), Positives = 56/77 (72%)

Query:     1 GDLTGTAAVKLWVDERPKYNYNSNTCVGG-ECRHYTQVVWRNSVRLGCARVKCNNNRGTF 59
             G L+G  AVKLWV+E+  Y Y SNTC  G +C HYTQVVWR S  +GCA+VKC+N  GTF
Sbjct:    91 GALSGAEAVKLWVNEKSDYIYASNTCSDGKQCGHYTQVVWRTSEWVGCAKVKCDNG-GTF 149

Query:    60 VICSYDPPGNVAGKRPY 76
             V C+Y PPGN  G+ PY
Sbjct:   150 VTCNYYPPGNYRGRWPY 166

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM;IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2134193 AT4G33730 "AT4G33730" [Arabidopsis thaliana (taxid:3702)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 41/76 (53%), Positives = 52/76 (68%)

Query:     1 GDLTGTAAVKLWVDERPKYNYNSNTCVGGECRHYTQVVWRNSVRLGCARVKCNNNRGTFV 60
             GD++   AV +WV E+  Y++ SN+C G  C HYTQVVWR S RLGC + KCNN   + V
Sbjct:    98 GDMSAAQAVAMWVHEKSYYDFYSNSCHGPACGHYTQVVWRGSARLGCGKAKCNNG-ASIV 156

Query:    61 ICSYDPPGNVAGKRPY 76
             +C+YDP GN  G RPY
Sbjct:   157 VCNYDPAGNYIGARPY 172

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM;IEA;ISS

GO:0008150 "biological_process" evidence=ND

GO:0010054 "trichoblast differentiation" evidence=RCA

TAIR|locus:2031055 AT1G50060 "AT1G50060" [Arabidopsis thaliana (taxid:3702)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 43/71 (60%), Positives = 54/71 (76%)

Query:     7 AAVKLWVDERPKYNYNSNTCVGG-ECRHYTQVVWRNSVRLGCARVKCNNNRGTFVICSYD 65
             +AVKLWVDE+P Y+Y  N C GG +C HYTQVVWR+SV++GCARV+C N    FV C+Y+
Sbjct:    92 SAVKLWVDEKPYYSYAYNNCTGGKQCLHYTQVVWRDSVKIGCARVQCTNT-WWFVSCNYN 150

Query:    66 PPGNVAGKRPY 76
              PGN  G+ PY
Sbjct:   151 SPGNWVGEYPY 161

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM;ISS

GO:0008150 "biological_process" evidence=ND

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	76
cd05381	136	cd05381, SCP_PR-1_like, SCP_PR-1_like: SCP-like ex	2e-40
cd05384	129	cd05384, SCP_PRY1_like, SCP_PRY1_like: SCP-like ex	9e-23
smart00198	144	smart00198, SCP, SCP / Tpx-1 / Ag5 / PR-1 / Sc7 fa	1e-20
cd05382	132	cd05382, SCP_GAPR-1_like, SCP_GAPR-1_like: SCP-lik	4e-19
cd00168	122	cd00168, SCP, SCP: SCP-like extracellular protein	5e-18
cd05380	144	cd05380, SCP_euk, SCP_euk: SCP-like extracellular	4e-14
cd05385	144	cd05385, SCP_GLIPR-1_like, SCP_GLIPR-1_like: SCP-l	6e-14
cd05559	136	cd05559, SCP_HrTT-1, SCP_HrTT-1: SCP-like extracel	1e-12
pfam00188	121	pfam00188, CAP, Cysteine-rich secretory protein fa	4e-10
cd05383	138	cd05383, SCP_CRISP, SCP_CRISP: SCP-like extracellu	2e-07

>gnl|CDD|240181 cd05381, SCP_PR-1_like, SCP_PR-1_like: SCP-like extracellular protein domain, PR-1 like subfamily

 Score =  128 bits (324), Expect = 2e-40
 Identities = 44/74 (59%), Positives = 54/74 (72%), Gaps = 1/74 (1%)

Query: 4   TGTAAVKLWVDERPKYNYNSNTCVGG-ECRHYTQVVWRNSVRLGCARVKCNNNRGTFVIC 62
           +   AV  WV E+  Y+Y+SNTC  G  C HYTQVVWRN+ R+GCARV C+N  G F+IC
Sbjct: 63  SAADAVASWVSEKKYYDYDSNTCAAGKMCGHYTQVVWRNTTRVGCARVTCDNGGGVFIIC 122

Query: 63  SYDPPGNVAGKRPY 76
           +YDPPGN  G+RPY
Sbjct: 123 NYDPPGNYIGQRPY 136

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in cell wall loosening. It also includes CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. Length = 136

>gnl|CDD|240184 cd05384, SCP_PRY1_like, SCP_PRY1_like: SCP-like extracellular protein domain, PRY1-like sub-family restricted to fungi

 Score = 83.9 bits (208), Expect = 9e-23
 Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 1/69 (1%)

Query: 4   TGTAAVKLWVDERPKYNYNSNTCVGGECRHYTQVVWRNSVRLGCARVKCNNNRGTFVICS 63
           +GT+AV  W DE   Y+Y+ N        H+TQ+VW+++ ++GCA   C    G +++C 
Sbjct: 62  SGTSAVDAWYDEIEDYDYS-NPGFSEATGHFTQLVWKSTTQVGCAYKDCGGAWGWYIVCE 120

Query: 64  YDPPGNVAG 72
           YDP GNV G
Sbjct: 121 YDPAGNVIG 129

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. PRY1 is a yeast protein that is up-regulated in core ESCRT mutants. This PRY1-like group also contains fruiting body proteins SC7/14 from Schizophyllum commune. Length = 129

>gnl|CDD|214553 smart00198, SCP, SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains

 Score = 78.6 bits (194), Expect = 1e-20
 Identities = 31/69 (44%), Positives = 42/69 (60%), Gaps = 4/69 (5%)

Query: 2   DLTGTAAVKLWVDERPKYNYNSNTCV--GGECRHYTQVVWRNSVRLGCARVKCNNN--RG 57
           D   +AAV+LW DE   Y Y+SNTC    G+  HYTQVVW  + ++GC    C +   + 
Sbjct: 76  DTYASAAVQLWYDEFQDYGYSSNTCKDTNGKIGHYTQVVWAKTYKVGCGVANCPDGTKKK 135

Query: 58  TFVICSYDP 66
           T V+C+YDP
Sbjct: 136 TVVVCNYDP 144

Human glioma pathogenesis-related protein GliPR and the plant pathogenesis-related protein represent functional links between plant defense systems and human immune system. This family has no known function. Length = 144

>gnl|CDD|240182 cd05382, SCP_GAPR-1_like, SCP_GAPR-1_like: SCP-like extracellular protein domain, golgi-associated plant pathogenesis related protein (GAPR)-like sub-family

 Score = 74.6 bits (184), Expect = 4e-19
 Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 2/70 (2%)

Query: 1   GDLTGTAAVKLWVDERPKYNYNSNTCVGGECRHYTQVVWRNSVRLGCARVKCNNNRGTFV 60
            DLTG  AV  W +E  KY++N          H+TQVVW++S  LG    K +     +V
Sbjct: 65  PDLTGEEAVDSWYNEIKKYDFNKPGFSSK-TGHFTQVVWKSSTELGVGVAK-SKKGCVYV 122

Query: 61  ICSYDPPGNV 70
           +  Y P GNV
Sbjct: 123 VARYRPAGNV 132

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. The human GAPR-1 protein has been reported to dimerize, and such a dimer may form an active site containing a catalytic triad. GAPR-1 and GLIPR-2 appear to be synonyms. Length = 132

>gnl|CDD|238097 cd00168, SCP, SCP: SCP-like extracellular protein domain, found in eukaryotes and prokaryotes

 Score = 71.3 bits (175), Expect = 5e-18
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 2/65 (3%)

Query: 1   GDLTGTAAVKLWVDERPKYNYNSNTCVGGECRHYTQVVWRNSVRLGCARVKCNNNRGTFV 60
            D+TG AAV+ W +E   YN+       G   HYTQVVW+N+ ++GC    C +N   +V
Sbjct: 60  YDMTGPAAVQAWYNEIKNYNFGQPGFSSG-TGHYTQVVWKNTTKIGCGVAFCGSNS-YYV 117

Query: 61  ICSYD 65
           +C+Y 
Sbjct: 118 VCNYG 122

This family includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in cell wall loosening. This family also includes CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Roles for CRISP, in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. The human GAPR-1 protein has been reported to dimerize, and such a dimer may form an active site containing a catalytic triad. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as the CRISPs, are involved in, and is supported by sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how helothermine, a toxic peptide secreted by the beaded lizard, blocks Ca++ transporting ryanodine receptors. Little is known about the biological roles of the bacterial and archaeal SCP domains. Length = 122

>gnl|CDD|240180 cd05380, SCP_euk, SCP_euk: SCP-like extracellular protein domain, as found mainly in eukaryotes

 Score = 62.2 bits (151), Expect = 4e-14
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 4/66 (6%)

Query: 4   TGTAAVKLWVDERPKYNYNSNT--CVGGECRHYTQVVWRNSVRLGCARVKCNNNRG--TF 59
               AV  W +E   Y + SN          H+TQ+VW  + ++GCA  +C  + G  T 
Sbjct: 79  LAEDAVNAWYNELKDYGFGSNPTNNFNSGIGHFTQMVWAKTTKVGCAVARCGKDGGNKTV 138

Query: 60  VICSYD 65
           V+C+Y 
Sbjct: 139 VVCNYS 144

This family includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. Length = 144

>gnl|CDD|240185 cd05385, SCP_GLIPR-1_like, SCP_GLIPR-1_like: SCP-like extracellular protein domain, glioma pathogenesis-related protein (GLIPR)-like sub-family

 Score = 61.6 bits (150), Expect = 6e-14
 Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 7/65 (10%)

Query: 8   AVKLWVDERPKYNYNSNTCVGGECRHYTQVVWRNSVRLGCARVKCNN-----NRGTFVIC 62
           AV  W +E   Y++++N+C    C HYTQVVW  S ++GCA   C N     N   FV C
Sbjct: 82  AVTSWYNEGKFYDFDTNSC-SRVCGHYTQVVWATSYKVGCAVAFCPNLGGIPNAAIFV-C 139

Query: 63  SYDPP 67
           +Y P 
Sbjct: 140 NYAPA 144

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. Length = 144

>gnl|CDD|240186 cd05559, SCP_HrTT-1, SCP_HrTT-1: SCP-like extracellular protein domain in HrTT-1, a tail-tip epidermis marker in ascidians

 Score = 58.3 bits (141), Expect = 1e-12
 Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 7/67 (10%)

Query: 5   GTAAVKLWVDERPKYNYNSNTCVGGE-CRHYTQVVWRNSVRLGCARVKCNNNRG------ 57
            T AV+ W +E+  YNYN+NTC   + C HYTQVVW N+ ++GC    C           
Sbjct: 69  ATKAVEDWNNEKLDYNYNTNTCAPNKMCGHYTQVVWANTFKIGCGSYFCETLEVLRWENA 128

Query: 58  TFVICSY 64
           T ++C+Y
Sbjct: 129 TLLVCNY 135

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. Length = 136

>gnl|CDD|215778 pfam00188, CAP, Cysteine-rich secretory protein family

 Score = 51.1 bits (122), Expect = 4e-10
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 5   GTAAVKLWVDERPKYNYNSNTCVGGE-CRHYTQVVWRNSVRLGCARVKCNNNRGTFVICS 63
           G AAV+ W DE   Y+             H T ++W  S ++GCA  KC +    +V+C+
Sbjct: 61  GVAAVENWYDEAKDYDAAVGINAWMSSPGHRTNLLWPKSTKVGCAVAKCGDGSSYYVVCN 120

Query: 64  Y 64
           Y
Sbjct: 121 Y 121

This is a large family of cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins (CAP) that are found in a wide range of organisms, including prokaryotes and non-vertebrate eukaryotes, The nine subfamilies of the mammalian CAP 'super'family include: the human glioma pathogenesis-related 1 (GLIPR1), Golgi associated pathogenesis related-1 (GAPR1) proteins, peptidase inhibitor 15 (PI15), peptidase inhibitor 16 (PI16), cysteine-rich secretory proteins (CRISPs), CRISP LCCL domain containing 1 (CRISPLD1), CRISP LCCL domain containing 2 (CRISPLD2), mannose receptor like and the R3H domain containing like proteins. Members are most often secreted and have an extracellular endocrine or paracrine function and are involved in processes including the regulation of extracellular matrix and branching morphogenesis, potentially as either proteases or protease inhibitors; in ion channel regulation in fertility; as tumour suppressor or pro-oncogenic genes in tissues including the prostate; and in cell-cell adhesion during fertilisation. The overall protein structural conservation within the CAP 'super'family results in fundamentally similar functions for the CAP domain in all members, yet the diversity outside of this core region dramatically alters the target specificity and, thus, the biological consequences. The Ca++-chelating function would fit with the various signalling processes (e.g. the CRISP proteins) that members of this family are involved in, and also the sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how helothermine from Heloderma horridum horridum blocks the Ca++ transporting ryanodine receptors. Length = 121

>gnl|CDD|240183 cd05383, SCP_CRISP, SCP_CRISP: SCP-like extracellular protein domain, CRISP-like sub-family

 Score = 44.6 bits (106), Expect = 2e-07
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 2/62 (3%)

Query: 8   AVKLWVDERPKYNYNSNTC-VGGECRHYTQVVWRNSVRLGCARVKCNNNRGT-FVICSYD 65
            ++ W DE   + Y       G    HYTQ+VW  S  +GCA   C N++   F +C Y 
Sbjct: 77  VIQAWYDEYKDFKYGVGATPPGAVVGHYTQIVWYKSYLVGCAVAYCPNSKYKYFYVCHYC 136

Query: 66  PP 67
           P 
Sbjct: 137 PA 138

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Involvement of CRISP in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as the CRISPs, are involved in, and is supported by sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how helothermine, a toxic peptide secreted by the beaded lizard, blocks Ca++ transporting ryanodine receptors. One member, DE or CRISP-1, has been shown to mediate gamete fusion by binding to the egg surface; a sequence motif in the SCP domain plays a role in that binding. Length = 138

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	76
cd05381	136	SCP_PR-1_like SCP_PR-1_like: SCP-like extracellula	99.95
cd05384	129	SCP_PRY1_like SCP_PRY1_like: SCP-like extracellula	99.92
cd05382	132	SCP_GAPR-1_like SCP_GAPR-1_like: SCP-like extracel	99.9
KOG3017	225	consensus Defense-related protein containing SCP d	99.89
cd05383	138	SCP_CRISP SCP_CRISP: SCP-like extracellular protei	99.89
cd05385	144	SCP_GLIPR-1_like SCP_GLIPR-1_like: SCP-like extrac	99.88
smart00198	144	SCP SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extra	99.85
cd05559	136	SCP_HrTT-1 SCP_HrTT-1: SCP-like extracellular prot	99.84
cd00168	122	SCP SCP: SCP-like extracellular protein domain, fo	99.78
cd05380	144	SCP_euk SCP_euk: SCP-like extracellular protein do	99.75
PF00188	124	CAP: Cysteine-rich secretory protein family; Inter	99.24
TIGR02909	127	spore_YkwD uncharacterized protein, YkwD family. M	97.56
cd05379	122	SCP_bacterial SCP_bacterial: SCP-like extracellula	97.49
KOG0286	343	consensus G-protein beta subunit [General function	83.5

>cd05381 SCP_PR-1_like SCP_PR-1_like: SCP-like extracellular protein domain, PR-1 like subfamily

Probab=99.95  E-value=1.3e-28  Score=144.79  Aligned_cols=74  Identities=59%  Similarity=1.282  Sum_probs=66.7

Q ss_pred             CCHHHHHHHHHhhcCCCCCCCCCCcCce-eccceeeeeccccEEEEEEEEccCCCcEEEEEEecCCCCCCCCCCC
Q 039461            3 LTGTAAVKLWVDERPKYNYNSNTCVGGE-CRHYTQVVWRNSVRLGCARVKCNNNRGTFVICSYDPPGNVAGKRPY   76 (76)
Q Consensus         3 ~~~~~~v~~W~~e~~~y~~~~~~~~~~~-~~hftq~vw~~t~~vGCa~~~c~~~~~~~~VC~Y~p~GN~~g~~~Y   76 (76)
                      .++.++|+.|++|.++|++..+.+..+. ++|||||||++|++||||++.|..++..++||+|+|+||+.|++||
T Consensus        62 ~~~~~~v~~W~~e~~~y~~~~~~~~~~~~~~hftq~vw~~t~~vGCa~~~c~~~~~~~vvC~Y~p~gn~~g~~~Y  136 (136)
T cd05381          62 WSAADAVASWVSEKKYYDYDSNTCAAGKMCGHYTQVVWRNTTRVGCARVTCDNGGGVFIICNYDPPGNYIGQRPY  136 (136)
T ss_pred             CCHHHHHHHHHhccccCCCCCCCcCCCccchHHHHHHHHhcCEeceEEEEeCCCCcEEEEEEeeCCCCCCCCCCC
Confidence            4688999999999999999888766544 9999999999999999999999654578999999999999999998

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in cell wall loosening. It also includes CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.

>cd05384 SCP_PRY1_like SCP_PRY1_like: SCP-like extracellular protein domain, PRY1-like sub-family restricted to fungi

Probab=99.92  E-value=6.3e-25  Score=128.13  Aligned_cols=68  Identities=40%  Similarity=0.925  Sum_probs=58.7

Q ss_pred             CHHHHHHHHHhhcCCCCCCCCCCcCceeccceeeeeccccEEEEEEEEccCCCcEEEEEEecCCCCCCC
Q 039461            4 TGTAAVKLWVDERPKYNYNSNTCVGGECRHYTQVVWRNSVRLGCARVKCNNNRGTFVICSYDPPGNVAG   72 (76)
Q Consensus         4 ~~~~~v~~W~~e~~~y~~~~~~~~~~~~~hftq~vw~~t~~vGCa~~~c~~~~~~~~VC~Y~p~GN~~g   72 (76)
                      +++++++.|++|.++|++..+.+ ...++|||||||++|++||||++.|......++||+|+|+||+.|
T Consensus        62 ~~~~~v~~W~~e~~~y~~~~~~~-~~~~~h~tqmvw~~t~~vGCa~~~c~~~~~~~~vC~Y~p~Gn~~g  129 (129)
T cd05384          62 SGTSAVDAWYDEIEDYDYSNPGF-SEATGHFTQLVWKSTTQVGCAYKDCGGAWGWYIVCEYDPAGNVIG  129 (129)
T ss_pred             CHHHHHHHHHhhhhhCCCCCCCC-CCcccchhhhhhhccceeeeEEEEeCCCCeEEEEEEEECCCCCCc
Confidence            67899999999999999987543 234999999999999999999999954346889999999999875

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. PRY1 is a yeast protein that is up-regulated in core ESCRT mutants. This PRY1-like group also contains fruiting body proteins SC7/14 from Schizophyllum commune.

>cd05382 SCP_GAPR-1_like SCP_GAPR-1_like: SCP-like extracellular protein domain, golgi-associated plant pathogenesis related protein (GAPR)-like sub-family

Probab=99.90  E-value=1.7e-23  Score=122.10  Aligned_cols=67  Identities=40%  Similarity=0.756  Sum_probs=57.6

Q ss_pred             CCCHHHHHHHHHhhcCCCCCCCCCCcCceeccceeeeeccccEEEEEEEEccCCCcEEEEEEecCCCCC
Q 039461            2 DLTGTAAVKLWVDERPKYNYNSNTCVGGECRHYTQVVWRNSVRLGCARVKCNNNRGTFVICSYDPPGNV   70 (76)
Q Consensus         2 ~~~~~~~v~~W~~e~~~y~~~~~~~~~~~~~hftq~vw~~t~~vGCa~~~c~~~~~~~~VC~Y~p~GN~   70 (76)
                      +.+++++|+.|++|..+|++..+... ..++|||||||++|++||||++.|.. +.+++||+|+|+||+
T Consensus        66 ~~~~~~~v~~W~~e~~~y~~~~~~~~-~~~gh~tqmvw~~t~~vGCa~~~~~~-~~~~~vC~Y~p~Gn~  132 (132)
T cd05382          66 DLTGEEAVDSWYNEIKKYDFNKPGFS-SKTGHFTQVVWKSSTELGVGVAKSKK-GCVYVVARYRPAGNV  132 (132)
T ss_pred             CCCHHHHHHHHHhccccCCCCCCCCC-CCCCCeEEeEecCCCceeeEEEEcCC-CCEEEEEEEeCCCCC
Confidence            45789999999999999998755432 34999999999999999999999943 568999999999995

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. The human GAPR-1 protein has been reported to dimerize, and such a dimer may form an active site containing a catalytic triad. GAPR-1 and GLIPR-2 appear to be synonyms.

>KOG3017 consensus Defense-related protein containing SCP domain [Function unknown]

Probab=99.89  E-value=1.3e-23  Score=132.00  Aligned_cols=74  Identities=46%  Similarity=0.979  Sum_probs=63.9

Q ss_pred             CCHHHHHHHHHhhcCCCCCCCCCCcC---ce-eccceeeeeccccEEEEEEEEccCCC----cEEEEEEecCCCCCCC-C
Q 039461            3 LTGTAAVKLWVDERPKYNYNSNTCVG---GE-CRHYTQVVWRNSVRLGCARVKCNNNR----GTFVICSYDPPGNVAG-K   73 (76)
Q Consensus         3 ~~~~~~v~~W~~e~~~y~~~~~~~~~---~~-~~hftq~vw~~t~~vGCa~~~c~~~~----~~~~VC~Y~p~GN~~g-~   73 (76)
                      .+...+++.|+.|...|++.++.+..   +. ++|||||||++|++||||++.|..+.    .+++||+|+|+||..+ +
T Consensus       116 ~~~~~a~~~w~~e~~~~~~~~~~~~~~~~~~~~gHyTQ~vw~~s~~vGCgv~~c~~~~~~~~~~~~vC~Y~p~g~~~~~~  195 (225)
T KOG3017|consen  116 TSGALAVEAWESEFQEYDWSSNTCSSADFGEGIGHYTQMVWAKSTKVGCGVVRCGNGSNGYNTVAVVCNYDPPGNNINGE  195 (225)
T ss_pred             ccHHHHHHHHHHHHHHccCcccccCcccCCCcceEEEEEEEeCCceeceeeccCCCCCCCcceEEEEEEeecCCCCcCCC
Confidence            56778999999999999999988864   34 99999999999999999999997664    7899999999965555 5


Q ss_pred             CCC
Q 039461           74 RPY   76 (76)
Q Consensus        74 ~~Y   76 (76)
                      .||
T Consensus       196 ~~y  198 (225)
T KOG3017|consen  196 IPY  198 (225)
T ss_pred             CcC
Confidence            766

>cd05383 SCP_CRISP SCP_CRISP: SCP-like extracellular protein domain, CRISP-like sub-family

Probab=99.89  E-value=2.1e-23  Score=123.10  Aligned_cols=65  Identities=32%  Similarity=0.690  Sum_probs=55.8

Q ss_pred             CCHHHHHHHHHhhcCCCCCCCCCCcCce-eccceeeeeccccEEEEEEEEccCC-CcEEEEEEecCC
Q 039461            3 LTGTAAVKLWVDERPKYNYNSNTCVGGE-CRHYTQVVWRNSVRLGCARVKCNNN-RGTFVICSYDPP   67 (76)
Q Consensus         3 ~~~~~~v~~W~~e~~~y~~~~~~~~~~~-~~hftq~vw~~t~~vGCa~~~c~~~-~~~~~VC~Y~p~   67 (76)
                      .++.++|+.|++|..+|+++.+.+..+. ++|||||||++|++||||++.|..+ ..+++||+|+|+
T Consensus        72 ~~~~~av~~W~~e~~~y~~~~~~~~~~~~~~hftqmvw~~t~~vGCa~~~c~~~~~~~~~vC~Y~P~  138 (138)
T cd05383          72 RSWSDVIQAWYDEYKDFKYGVGATPPGAVVGHYTQIVWYKSYLVGCAVAYCPNSKYKYFYVCHYCPA  138 (138)
T ss_pred             CCHHHHHHHHHHHHHhCCCCCCCCCCCCchhhHHHHHHHhccccceEEEECCCCCcCEEEEEecCCC
Confidence            3578999999999999999877654444 9999999999999999999999543 268899999994

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Involvement of CRISP in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as the CRISPs, are involved in, and is supported by sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how helothermine, a toxic peptide secreted by the beaded lizard, blocks Ca++ t

>cd05385 SCP_GLIPR-1_like SCP_GLIPR-1_like: SCP-like extracellular protein domain, glioma pathogenesis-related protein (GLIPR)-like sub-family

Probab=99.88  E-value=6.2e-23  Score=121.85  Aligned_cols=64  Identities=38%  Similarity=0.864  Sum_probs=55.2

Q ss_pred             CCHHHHHHHHHhhcCCCCCCCCCCcCceeccceeeeeccccEEEEEEEEccCCC----cEEEEEEecCC
Q 039461            3 LTGTAAVKLWVDERPKYNYNSNTCVGGECRHYTQVVWRNSVRLGCARVKCNNNR----GTFVICSYDPP   67 (76)
Q Consensus         3 ~~~~~~v~~W~~e~~~y~~~~~~~~~~~~~hftq~vw~~t~~vGCa~~~c~~~~----~~~~VC~Y~p~   67 (76)
                      +++.++|+.||+|.++|+|..+.+. ..++|||||||++|++||||++.|..++    ..+|||+|+|+
T Consensus        77 ~~~~~av~~W~~e~~~y~~~~~~~~-~~~ghftqmvw~~t~~vGCa~~~c~~~~~~~~~~~vVC~Y~p~  144 (144)
T cd05385          77 FSPKNAVTSWYNEGKFYDFDTNSCS-RVCGHYTQVVWATSYKVGCAVAFCPNLGGIPNAAIFVCNYAPA  144 (144)
T ss_pred             CCHHHHHHHHHHHHHhCCCCCCCCC-CcccCHHHHHHhhccccceEEEECCCCCCccccEEEEEeCCCC
Confidence            4678899999999999999877653 3599999999999999999999996532    47899999994

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.

>smart00198 SCP SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains

Probab=99.85  E-value=3.3e-22  Score=118.06  Aligned_cols=65  Identities=46%  Similarity=0.965  Sum_probs=55.7

Q ss_pred             CCHHHHHHHHHhhcCCCCCCCCCCcC-c-eeccceeeeeccccEEEEEEEEccCCC--cEEEEEEecCC
Q 039461            3 LTGTAAVKLWVDERPKYNYNSNTCVG-G-ECRHYTQVVWRNSVRLGCARVKCNNNR--GTFVICSYDPP   67 (76)
Q Consensus         3 ~~~~~~v~~W~~e~~~y~~~~~~~~~-~-~~~hftq~vw~~t~~vGCa~~~c~~~~--~~~~VC~Y~p~   67 (76)
                      ..++++|+.|++|.++|++..+.+.. + .++|||||||++|++||||++.|..++  .+++||+|+|+
T Consensus        76 ~~~~~av~~W~~e~~~y~~~~~~~~~~~~~~~hftqmvw~~s~~vGCa~~~c~~~~~~~~~~vC~Y~P~  144 (144)
T smart00198       76 TYASAAVQLWYDEFQDYGYSSNTCKDTNGKIGHYTQVVWAKTYKVGCGVSNCPDGTKKKTVVVCNYDPP  144 (144)
T ss_pred             hhHHHHHHHHHHHHHHcCCCCCccccCccchhHHHHHHHHhcCCcceEEEECCCCCcceEEEEEecCCC
Confidence            46788999999999999998877653 3 499999999999999999999995443  37999999994

Human glioma pathogenesis-related protein GliPR and the plant pathogenesis-related protein represent functional links between plant defense systems and human immune system. This family has no known function.

>cd05559 SCP_HrTT-1 SCP_HrTT-1: SCP-like extracellular protein domain in HrTT-1, a tail-tip epidermis marker in ascidians

Probab=99.84  E-value=1.7e-21  Score=114.87  Aligned_cols=63  Identities=43%  Similarity=0.973  Sum_probs=54.5

Q ss_pred             CCHHHHHHHHHhhcCCCCCCCCCCcCce-eccceeeeeccccEEEEEEEEccCC------CcEEEEEEec
Q 039461            3 LTGTAAVKLWVDERPKYNYNSNTCVGGE-CRHYTQVVWRNSVRLGCARVKCNNN------RGTFVICSYD   65 (76)
Q Consensus         3 ~~~~~~v~~W~~e~~~y~~~~~~~~~~~-~~hftq~vw~~t~~vGCa~~~c~~~------~~~~~VC~Y~   65 (76)
                      .++.++|+.|++|.++|++..+.+..+. ++|||||||++|++||||++.|...      ...++||+|+
T Consensus        67 ~~~~~~v~~W~~e~~~y~~~~~~~~~~~~~~hftqmvw~~t~~vGCa~~~c~~~~~~~~~~~~~~vC~Y~  136 (136)
T cd05559          67 FDATKAVEDWNNEKLDYNYNTNTCAPNKMCGHYTQVVWANTFKIGCGSYFCETLEVLRWENATLLVCNYG  136 (136)
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCCCCCCCcccchHHHHHhccCccceEEEECCCCCCCCcccCEEEEecCC
Confidence            4688999999999999999887765554 9999999999999999999999542      2478999995

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.

>cd00168 SCP SCP: SCP-like extracellular protein domain, found in eukaryotes and prokaryotes

Probab=99.78  E-value=3.4e-19  Score=102.87  Aligned_cols=61  Identities=38%  Similarity=0.877  Sum_probs=52.2

Q ss_pred             CCHHHHHHHHHhhcCCCCCCCCCCcCceeccceeeeeccccEEEEEEEEccCCCcEEEEEEec
Q 039461            3 LTGTAAVKLWVDERPKYNYNSNTCVGGECRHYTQVVWRNSVRLGCARVKCNNNRGTFVICSYD   65 (76)
Q Consensus         3 ~~~~~~v~~W~~e~~~y~~~~~~~~~~~~~hftq~vw~~t~~vGCa~~~c~~~~~~~~VC~Y~   65 (76)
                      .+++++++.|++|.++|+|..+.. ...++|||||||++|++||||++.|.. +..++||+|.
T Consensus        62 ~~~~~~v~~W~~e~~~y~~~~~~~-~~~~~h~~qmvw~~s~~vGca~~~~~~-~~~~~vC~Y~  122 (122)
T cd00168          62 MTGPAAVQAWYNEIKNYNFGQPGF-SSGTGHYTQVVWKNTTKIGCGVAFCGS-NSYYVVCNYG  122 (122)
T ss_pred             CCHHHHHHHHHHHHHhCCCCCCCC-CCCccchhhhhcccCCeeeeEEEEcCC-CCEEEEEeCc
Confidence            478899999999999999985543 234999999999999999999999943 5688999995

This family includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in cell wall loosening. This family also includes CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Roles for CRISP, in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. The human GAPR-1 protein has been reported to dimerize, and such a dimer may form an active site containing a catalytic triad. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as

>cd05380 SCP_euk SCP_euk: SCP-like extracellular protein domain, as found mainly in eukaryotes

Probab=99.75  E-value=3.6e-19  Score=104.43  Aligned_cols=62  Identities=34%  Similarity=0.743  Sum_probs=51.9

Q ss_pred             CHHHHHHHHHhhcCCCCCCCC-CCcCc-eeccceeeeeccccEEEEEEEEccCC--CcEEEEEEec
Q 039461            4 TGTAAVKLWVDERPKYNYNSN-TCVGG-ECRHYTQVVWRNSVRLGCARVKCNNN--RGTFVICSYD   65 (76)
Q Consensus         4 ~~~~~v~~W~~e~~~y~~~~~-~~~~~-~~~hftq~vw~~t~~vGCa~~~c~~~--~~~~~VC~Y~   65 (76)
                      .+.++|+.|++|..+|++... .+... .++|||||||++|++||||++.|...  ...++||+|+
T Consensus        79 ~~~~~v~~W~~e~~~~~~~~~~~~~~~~~~~hftq~vw~~t~~vGCa~~~~~~~~~~~~~~vC~Y~  144 (144)
T cd05380          79 LAEDAVNAWYNELKDYGFGSNPTNNFNSGIGHFTQMVWAKTTKVGCAVARCGKDGGNKTVVVCNYS  144 (144)
T ss_pred             HHHHHHHHHHHHHHHcCCCcCcccccccchhHHHHHHHHhcCccceEEEEeecCCceEEEEEecCC
Confidence            578899999999999999875 22223 39999999999999999999999543  4689999995

This family includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.

>PF00188 CAP: Cysteine-rich secretory protein family; InterPro: IPR014044 The cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins (CAP) superfamily proteins are found in a wide range of organisms, including prokaryotes [] and non-vertebrate eukaryotes [], The nine subfamilies of the mammalian CAP superfamily include: the human glioma pathogenesis-related 1 (GLIPR1), Golgi associated pathogenesis related-1 (GAPR1) proteins, peptidase inhibitor 15 (PI15), peptidase inhibitor 16 (PI16), cysteine-rich secretory proteins (CRISPs), CRISP LCCL domain containing 1 (CRISPLD1), CRISP LCCL domain containing 2 (CRISPLD2), mannose receptor like and the R3H domain containing like proteins

Probab=99.24  E-value=7.2e-12  Score=69.68  Aligned_cols=56  Identities=30%  Similarity=0.824  Sum_probs=41.7

Q ss_pred             HHHHHhhcCCCCCCCCC-CcC--ceeccceeeeeccccEEEEEEEEccCCCc-EEEEEEe
Q 039461            9 VKLWVDERPKYNYNSNT-CVG--GECRHYTQVVWRNSVRLGCARVKCNNNRG-TFVICSY   64 (76)
Q Consensus         9 v~~W~~e~~~y~~~~~~-~~~--~~~~hftq~vw~~t~~vGCa~~~c~~~~~-~~~VC~Y   64 (76)
                      ++.|+.+...+...... ...  ..++||+||+|.++++||||++.|..... +++||+|
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ll~~~~~~iGca~~~~~~~~~~~~~vc~y  124 (124)
T PF00188_consen   65 VENWYSESKNYNFQNQSIFNSWMNSPGHFTNLLWPNTTRIGCAVANCPNGKNNYYWVCNY  124 (124)
T ss_dssp             HHHHHGGGGGEETTCSTEESSTTSTCHHHHHHT-TT--EEEEEEEEETTSSSEEEEEEEE
T ss_pred             HHHHHhcccccccccchhhhccCCchhhhhhhhcCCCCEEEEEEEEeCCCCeeEEEEEEC
Confidence            88999999999877311 111  23899999999999999999999954433 9999998

Members are most often secreted and have an extracellular endocrine or paracrine function and are involved in processes including the regulation of extracellular matrix and branching morphogenesis, potentially as either proteases or protease inhibitors; in ion channel regulation in fertility; as tumour suppressor or pro-oncogenic genes in tissues including the prostate; and in cell-cell adhesion during fertilisation. The overall protein structural conservation within the CAP superfamily results in fundamentally similar functions for the CAP domain in all members, yet the diversity outside of this core region dramatically alters the target specificity and, thus, the biological consequences []. The Ca++-chelating function [] would fit with the various signalling processes (e.g. the CRISP proteins) that members of this family are involved in, and also the sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how Q91055 from SWISSPROT blocks the Ca++ transporting ryanodine receptors. This entry represents the CAP domain common to all members of the CAP superfamily. The CAP domain forms a unique 3 layer alpha-beta-alpha fold with some, though not all, of the structural elements found in proteases [].; PDB: 3U3N_C 3U3U_C 3U3L_C 1U53_A 1RC9_A 1SMB_A 3NT8_B 1QNX_A 1WVR_A 3Q2U_A ....

>TIGR02909 spore_YkwD uncharacterized protein, YkwD family

Probab=97.56  E-value=0.00021  Score=41.52  Aligned_cols=30  Identities=17%  Similarity=0.257  Sum_probs=24.2

Q ss_pred             eccceeeeeccccEEEEEEEEccCCCcEEEE
Q 039461           31 CRHYTQVVWRNSVRLGCARVKCNNNRGTFVI   61 (76)
Q Consensus        31 ~~hftq~vw~~t~~vGCa~~~c~~~~~~~~V   61 (76)
                      .+|+.+|+|.+.+++|||++.+. ++..|.|
T Consensus        93 ~gH~~nil~~~~~~~Gvg~~~~~-~g~~y~~  122 (127)
T TIGR02909        93 PGHRANILNPNYTEIGVGYVEGG-SGGIYWT  122 (127)
T ss_pred             HhHHHHHcCCCcCeEeEEEEeCC-CCCeEEE
Confidence            58999999999999999999873 3444444

Members of this protein family represent a subset of those belonging to Pfam family pfam00188 (SCP-like extracellular protein). Based on currently cuttoffs for this model, all member proteins are found in Bacteria capable of endospore formation. Members include a named but uncharacterized protein, YkwD of Bacillus subtilis. Only the C-terminal region is well-conserved and is included in the seed alignment for this model. Three members of this family have an N-terminal domain homologous to the spore coat assembly protein SafA.

>cd05379 SCP_bacterial SCP_bacterial: SCP-like extracellular protein domain, as found in bacteria and archaea

Probab=97.49  E-value=0.00022  Score=40.16  Aligned_cols=45  Identities=18%  Similarity=0.330  Sum_probs=33.7

Q ss_pred             CHHHHHHHHHhhcCCCCCCCCCCcCceeccceeeeeccccEEEEEEEEccCCCcEEEEEEe
Q 039461            4 TGTAAVKLWVDERPKYNYNSNTCVGGECRHYTQVVWRNSVRLGCARVKCNNNRGTFVICSY   64 (76)
Q Consensus         4 ~~~~~v~~W~~e~~~y~~~~~~~~~~~~~hftq~vw~~t~~vGCa~~~c~~~~~~~~VC~Y   64 (76)
                      ++.++++.|+++               .+|+.+|++...+++|||+.... ++..++|..|
T Consensus        77 ~~~~~~~~w~~~---------------~~H~~~ll~~~~~~~Gvg~~~~~-~~~~y~~~~f  121 (122)
T cd05379          77 TAEAAVDGWMNS---------------PGHRANILNPDYTEVGVGVAYGG-DGGYYWVQVF  121 (122)
T ss_pred             CHHHHHHHHhCC---------------HhHHHHHcCCCcceeeEEEEeCC-CCCeEEEEec
Confidence            456677777533               58999999999999999999873 3456666554

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. Little is known about the biological roles of the bacterial and archaeal SCP domains.

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=83.50  E-value=1.9  Score=29.24  Aligned_cols=35  Identities=20%  Similarity=0.451  Sum_probs=21.0

Q ss_pred             eeeeeccccEEEEEEEEccCCCcEEEEEEecCCCCCC
Q 039461           35 TQVVWRNSVRLGCARVKCNNNRGTFVICSYDPPGNVA   71 (76)
Q Consensus        35 tq~vw~~t~~vGCa~~~c~~~~~~~~VC~Y~p~GN~~   71 (76)
                      --+||+.-+.---....  -...++|.|.|+|.||..
T Consensus        78 klIvWDs~TtnK~haip--l~s~WVMtCA~sPSg~~V  112 (343)
T KOG0286|consen   78 KLIVWDSFTTNKVHAIP--LPSSWVMTCAYSPSGNFV  112 (343)
T ss_pred             eEEEEEcccccceeEEe--cCceeEEEEEECCCCCeE
Confidence            35777654432222111  123689999999999864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	76
1cfe_A	135	P14a, Nmr, 20 Structures Length = 135		3e-24
1u53_A	196	Novel X-Ray Structure Of Na-Asp-2, A Pr-1 Protein F		1e-06
3q2r_A	205	Crystal Structure Of Sglipr1 Soaked With Zinc Chlor		3e-06
1xta_A	221	Crystal Structure Of Natrin, A Snake Venom Crisp Fr		5e-06
1rc9_A	221	Crystal Structure Of Stecrisp, A Member Of Crisp Fa		9e-06
1xx5_A	221	Crystal Structure Of Natrin From Naja Atra Snake Ve		9e-06
1wvr_A	221	Crystal Structure Of A Crisp Family Ca-Channel Bloc		1e-05
1qnx_A	209	Ves V 5, An Allergen From Vespula Vulgaris Venom Le		1e-05
2dda_A	211	Crystal Structure Of Pseudechetoxin From Pseudechis		1e-05
1smb_A	154	Crystal Structure Of Golgi-Associated Pr-1 Protein		2e-05
2ddb_A	210	Crystal Structure Of Pseudecin From Pseudechis Porp		2e-05
4aiw_A	154	Gapr-1 With Bound Inositol Hexakisphosphate Length		2e-05
3nt8_A	424	Crystal Structure Of Na-Asp-1 Length = 424		2e-05
2vzn_A	218	Crystal Structure Of The Major Allergen From Fire A		4e-05

>pdb|1CFE|A Chain A, P14a, Nmr, 20 Structures Length = 135

Iteration: 1
 Score =  106 bits (264), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 52/76 (68%), Positives = 59/76 (77%), Gaps = 2/76 (2%)
Query: 1   GDLTGTAAVKLWVDERPKYNYNSNTCVGGE-CRHYTQVVWRNSVRLGCARVKCNNNRGTF 59
           GD TG AAV+LWV ERP YNY +N CVGG+ CRHYTQVVWRNSVRLGC R +CNN    F
Sbjct: 60  GDFTGRAAVQLWVSERPSYNYATNQCVGGKKCRHYTQVVWRNSVRLGCGRARCNNGW-WF 118
Query: 60  VICSYDPPGNVAGKRP 75
           + C+YDP GN  G+RP
Sbjct: 119 ISCNYDPVGNWIGQRP 134

>pdb|1U53|A Chain A, Novel X-Ray Structure Of Na-Asp-2, A Pr-1 Protein From The Nematode Parasite Necator Americanus And A Vaccine Antigen For Human Hookworm Infection Length = 196

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 33  HYTQVVWRNSVRLGCARVKCNNNRGTFVICSYDPPGNVAGKRPY 76
           HYTQ+VW+ +V+LGC    C+N    +V+C Y P GN+ GK  Y
Sbjct: 134 HYTQMVWQETVKLGCYVEACSNM--CYVVCQYGPAGNMMGKDIY 175

>pdb|3Q2R|A Chain A, Crystal Structure Of Sglipr1 Soaked With Zinc Chloride Length = 205

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 3   LTGTAAVKLWVDERPKYNYNSNTCVGGECRHYTQVVWRNSVRLGCARVKCNN-------N 55
            + ++A+  W DE   Y++ +  C    C HYTQVVW +S ++GCA   C         +
Sbjct: 93  FSVSSAITNWYDEIQDYDFKTRIC-KKVCGHYTQVVWADSYKVGCAVQFCPKVSGFDALS 151
Query: 56  RGTFVICSYDPPGN 69
            G   IC+Y P GN
Sbjct: 152 NGAHFICNYGPGGN 165

>pdb|1XTA|A Chain A, Crystal Structure Of Natrin, A Snake Venom Crisp From Taiwan Cobra (Naja Atra) Length = 221

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 4   TGTAAVKLWVDERPKYNYNSNTCVGGECR-HYTQVVWRNSVRLGCARVKCNNNRGT-FVI 61
           T T  + LW DE   + Y       G    HYTQ+VW  + R GCA   C ++  + F +
Sbjct: 85  TWTEIIHLWHDEYKNFVYGVGASPPGSVTGHYTQIVWYQTYRAGCAVSYCPSSAWSYFYV 144
Query: 62  CSYDPPGNVAGK 73
           C Y P GN  GK
Sbjct: 145 CQYCPSGNFQGK 156

>pdb|1RC9|A Chain A, Crystal Structure Of Stecrisp, A Member Of Crisp Family From Trimeresurus Stejnegeri Refined At 1.6 Angstroms Resolution: Structual Relationship Of The Two Domains Length = 221

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
Query: 3   LTGTAAVKLWVDERPKYNY----NSNTCVGGECRHYTQVVWRNSVRLGCARVKCNNNRGT 58
           +  T  +  W DE   + Y    +    V G   HYTQ+VW  S R+GCA   C ++  +
Sbjct: 84  MKWTDIIHAWHDEYKDFKYGVGADPPNAVTG---HYTQIVWYKSYRIGCAAAYCPSSPYS 140
Query: 59  -FVICSYDPPGNVAGK 73
            F +C Y P GN  GK
Sbjct: 141 YFFVCQYCPAGNFIGK 156

>pdb|1XX5|A Chain A, Crystal Structure Of Natrin From Naja Atra Snake Venom Length = 221

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 4   TGTAAVKLWVDERPKYNYNSNTCVGGECR-HYTQVVWRNSVRLGCARVKCNNNRGT-FVI 61
           T T  + LW DE   + Y       G    HYTQ+VW  + R GCA   C ++  + F +
Sbjct: 85  TWTEIIHLWHDEYKNFVYGVGANPPGSVTGHYTQIVWYQTYRAGCAVSYCPSSAWSYFYV 144
Query: 62  CSYDPPGNVAGK 73
           C Y P GN  GK
Sbjct: 145 CQYCPSGNFQGK 156

>pdb|1WVR|A Chain A, Crystal Structure Of A Crisp Family Ca-Channel Blocker Derived From Snake Venom Length = 221

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Query: 6   TAAVKLWVDERPKYNYN-----SNTCVGGECRHYTQVVWRNSVRLGCARVKCNNNRGT-F 59
           T  +  W  E   + Y      S+  +G    HYTQ+VW  S R GCA   C +++ + F
Sbjct: 87  TDIIHAWHGEYKDFKYGVGAVPSDAVIG----HYTQIVWYKSYRAGCAAAYCPSSKYSYF 142
Query: 60  VICSYDPPGNVAGK 73
            +C Y P GN+ GK
Sbjct: 143 YVCQYCPAGNIIGK 156

>pdb|1QNX|A Chain A, Ves V 5, An Allergen From Vespula Vulgaris Venom Length = 209

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 17/89 (19%)
Query: 3   LTGTAA---------VKLWVDE----RPKYNYNSNTCVGGECRHYTQVVWRNSVRLGCAR 49
           LTG+ A         VK+W DE     PK  ++ N  +  +  HYTQ+VW N+  +GC  
Sbjct: 120 LTGSTAAKYDDPVKLVKMWEDEVKDYNPKKKFSGNDFL--KTGHYTQMVWANTKEVGCGS 177
Query: 50  VKCNNNR--GTFVICSYDPPGNVAGKRPY 76
           +K    +    +++C+Y P GN   +  Y
Sbjct: 178 IKYIQEKWHKHYLVCNYGPSGNFKNEELY 206

>pdb|2DDA|A Chain A, Crystal Structure Of Pseudechetoxin From Pseudechis Australis Length = 211

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 6   TAAVKLWVDERPKYNYNSNTCVGGECR-HYTQVVWRNSVRLGCARVKCNNNRGTFVICSY 64
           +  V+ W DE   + Y       G    HYTQVVW  S  +GCA  KC++++  +V C Y
Sbjct: 79  SGVVQAWYDEIKNFVYGIGAKPPGSVIGHYTQVVWYKSYLIGCASAKCSSSKYLYV-CQY 137
Query: 65  DPPGNVAG 72
            P GN+ G
Sbjct: 138 CPAGNIRG 145

>pdb|1SMB|A Chain A, Crystal Structure Of Golgi-Associated Pr-1 Protein Length = 154

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 2   DLTGTAAVKLWVDERPKYNYNSNTCVGGECRHYTQVVWRNSVRLGCARVKCNNNRGTFVI 61
           D TG      W  E   YN+       G   H+T +VW+N+ ++G  +   ++   +FV+
Sbjct: 73  DQTGKEVADRWYSEIKNYNFQQPGFTSG-TGHFTAMVWKNTKKMGVGKASASDG-SSFVV 130
Query: 62  CSYDPPGNV 70
             Y P GNV
Sbjct: 131 ARYFPAGNV 139

>pdb|2DDB|A Chain A, Crystal Structure Of Pseudecin From Pseudechis Porphyriacus Length = 210

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 6   TAAVKLWVDERPKYNYNSNTCVGGECR-HYTQVVWRNSVRLGCARVKCNNNRGTFVICSY 64
           +  V+ W DE   + Y       G    HYTQVVW  S  +GCA  KC++++  +V C Y
Sbjct: 78  SGVVQAWYDEIKNFVYGIGAKPPGSVIGHYTQVVWYKSHLIGCASAKCSSSKYLYV-CQY 136
Query: 65  DPPGNVAG 72
            P GN+ G
Sbjct: 137 CPAGNIRG 144

>pdb|4AIW|A Chain A, Gapr-1 With Bound Inositol Hexakisphosphate Length = 154

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 2   DLTGTAAVKLWVDERPKYNYNSNTCVGGECRHYTQVVWRNSVRLGCARVKCNNNRGTFVI 61
           D TG      W  E   YN+       G   H+T +VW+N+ ++G  +   ++   +FV+
Sbjct: 73  DQTGKEVADRWYSEIKNYNFQQPGFTSG-TGHFTAMVWKNTKKMGVGKASASDG-SSFVV 130
Query: 62  CSYDPPGNV 70
             Y P GNV
Sbjct: 131 ARYFPAGNV 139

>pdb|3NT8|A Chain A, Crystal Structure Of Na-Asp-1 Length = 424

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 10/77 (12%)
Query: 8   AVKLWVDERPKYNYNSNTCV--------GGECRHYTQVVWRNSVRLGCARVKCNNNRGTF 59
           A +LW +E  +Y    +  +          +  HYTQ+ W  + +LGCA V CN+   TF
Sbjct: 325 ASQLWWNELKEYGVGPSNVLTTALWNRPNMQIGHYTQMAWDTTYKLGCAVVFCNDF--TF 382
Query: 60  VICSYDPPGNVAGKRPY 76
            +C Y P GN  G   Y
Sbjct: 383 GVCQYGPGGNYMGHVIY 399

>pdb|2VZN|A Chain A, Crystal Structure Of The Major Allergen From Fire Ant Venom, Sol I 3 Length = 218

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 9/82 (10%)
Query: 4   TGTAAVKLWVDERPKYN------YNSNTCVGGECRHYTQVVWRNSVRLGCARV---KCNN 54
           T    + LW +E   ++      + S+  +  +  HYTQ+VW  + ++GC R+   + +N
Sbjct: 127 TPNEMILLWYNEVKDFDNRWISSFPSDDNILMKVGHYTQIVWAKTTKIGCGRIMFKEPDN 186
Query: 55  NRGTFVICSYDPPGNVAGKRPY 76
               +++C+Y P GNV G   Y
Sbjct: 187 WTKHYLVCNYGPAGNVLGAPIY 208

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	76
1cfe_A	135	Pathogenesis-related protein P14A; PR-1 proteins,	5e-36
4aiw_A	154	Golgi-associated plant pathogenesis-related prote;	2e-33
1qnx_A	209	VES V 5, antigen 5; allergen, vespid venom; 1.90A	4e-28
1u53_A	196	Secreted protein Asp-2; antibiotic; 1.56A {Necator	3e-27
3q2u_A	205	Glioma pathogenesis-related protein 1; crisp, memb	2e-26
1xta_A	221	Natrin 1; crisp, serine protease, ION channel bloc	1e-25
2ddb_A	210	Pseudecin, channel blocker; crisp, snake venom, CN	4e-25
2vzn_A	218	Venom allergen 3; major FIRE ANT allergen, SOL I 3	5e-25
3nt8_A	424	Ancylostoma secreted protein 1; pathogenesis relat	1e-24
3nt8_A	424	Ancylostoma secreted protein 1; pathogenesis relat	2e-20
3u3l_C	233	Tablysin 15; CAP domain, alphavbeta3 integrin, sal	2e-11
3s6s_A	206	AC-Asp-7; pathogenesis-related protein, SCP/TAPS,	3e-08

>1cfe_A Pathogenesis-related protein P14A; PR-1 proteins, plant defense; NMR {Solanum lycopersicum} SCOP: d.111.1.1 Length = 135

 Score =  116 bits (294), Expect = 5e-36
 Identities = 53/77 (68%), Positives = 60/77 (77%), Gaps = 2/77 (2%)

Query: 1   GDLTGTAAVKLWVDERPKYNYNSNTCVGGE-CRHYTQVVWRNSVRLGCARVKCNNNRGTF 59
           GD TG AAV+LWV ERP YNY +N CVGG+ CRHYTQVVWRNSVRLGC R +CNN    F
Sbjct: 60  GDFTGRAAVQLWVSERPSYNYATNQCVGGKKCRHYTQVVWRNSVRLGCGRARCNNG-WWF 118

Query: 60  VICSYDPPGNVAGKRPY 76
           + C+YDP GN  G+RPY
Sbjct: 119 ISCNYDPVGNWIGQRPY 135

>4aiw_A Golgi-associated plant pathogenesis-related prote; lipid-binding protein, golgi apparatus, myristate; HET: I6P; 1.50A {Homo sapiens} PDB: 1smb_A* Length = 154

 Score =  111 bits (279), Expect = 2e-33
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 2/76 (2%)

Query: 1   GDLTGTAAVKLWVDERPKYNYNSNTCVGGECRHYTQVVWRNSVRLGCARVKCNNNRGTFV 60
            D TG      W  E   YN+       G   H+T +VW+N+ ++G  +   ++   +FV
Sbjct: 72  YDQTGKEVADRWYSEIKNYNFQQPGFTSG-TGHFTAMVWKNTKKMGVGKASASDG-SSFV 129

Query: 61  ICSYDPPGNVAGKRPY 76
           +  Y P GNV  +  +
Sbjct: 130 VARYFPAGNVVNEGFF 145

>1qnx_A VES V 5, antigen 5; allergen, vespid venom; 1.90A {Vespula vulgaris} SCOP: d.111.1.1 Length = 209

 Score = 99.1 bits (247), Expect = 4e-28
 Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 4/80 (5%)

Query: 1   GDLTGTAAVKLWVDERPKYNYNSNTCV--GGECRHYTQVVWRNSVRLGCARVKCNNNRG- 57
                   VK+W DE   YN           +  HYTQ+VW N+  +GC  +K    +  
Sbjct: 127 KYDDPVKLVKMWEDEVKDYNPKKKFSGNDFLKTGHYTQMVWANTKEVGCGSIKYIQEKWH 186

Query: 58  -TFVICSYDPPGNVAGKRPY 76
             +++C+Y P GN   +  Y
Sbjct: 187 KHYLVCNYGPSGNFKNEELY 206

>1u53_A Secreted protein Asp-2; antibiotic; 1.56A {Necator americanus} Length = 196

 Score = 96.8 bits (241), Expect = 3e-27
 Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 7/80 (8%)

Query: 2   DLTGTAAVKLWVDERPKYNYNSNTCVGGE-----CRHYTQVVWRNSVRLGCARVKCNNNR 56
                 A K W  E  +     N  + G        HYTQ+VW+ +V+LGC    C+N  
Sbjct: 98  AKAAEQASKAWFGELAEKGVGQNLKLTGGLFSRGVGHYTQMVWQETVKLGCYVEACSN-- 155

Query: 57  GTFVICSYDPPGNVAGKRPY 76
             +V+C Y P GN+ GK  Y
Sbjct: 156 MCYVVCQYGPAGNMMGKDIY 175

>3q2u_A Glioma pathogenesis-related protein 1; crisp, membrane protein; 1.85A {Homo sapiens} PDB: 3q2r_A Length = 205

 Score = 95.0 bits (236), Expect = 2e-26
 Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 9/83 (10%)

Query: 1   GDLTGTAAVKLWVDERPKYNYNSNTCVGGECRHYTQVVWRNSVRLGCARVKCNN------ 54
              + ++A+  W DE   Y++ +  C    C HYTQVVW +S ++GCA   C        
Sbjct: 91  PIFSVSSAITNWYDEIQDYDFKTRIC-KKVCGHYTQVVWADSYKVGCAVQFCPKVSGFDA 149

Query: 55  -NRGTFVICSYDPPGNVAGKRPY 76
            + G   IC+Y P GN     PY
Sbjct: 150 LSNGAHFICNYGPGGNY-PTWPY 171

>1xta_A Natrin 1; crisp, serine protease, ION channel blocking, cobra, toxin; 1.58A {Naja atra} PDB: 2giz_A 1xx5_A 3mz8_A 1rc9_A 1wvr_A Length = 221

 Score = 93.0 bits (231), Expect = 1e-25
 Identities = 29/80 (36%), Positives = 36/80 (45%), Gaps = 4/80 (5%)

Query: 1   GDLTGTAAVKLWVDERPKYNYNSNTCV-GGECRHYTQVVWRNSVRLGCARVKCNNN-RGT 58
              T T  + LW DE   + Y       G    HYTQ+VW  + R GCA   C ++    
Sbjct: 82  NARTWTEIIHLWHDEYKNFVYGVGASPPGSVTGHYTQIVWYQTYRAGCAVSYCPSSAWSY 141

Query: 59  FVICSYDPPGNVAGK--RPY 76
           F +C Y P GN  GK   PY
Sbjct: 142 FYVCQYCPSGNFQGKTATPY 161

>2ddb_A Pseudecin, channel blocker; crisp, snake venom, CNG channel, toxin; 1.90A {Pseudechis porphyriacus} PDB: 2epf_A 2dda_A Length = 210

 Score = 91.5 bits (227), Expect = 4e-25
 Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 4/79 (5%)

Query: 1   GDLTGTAAVKLWVDERPKYNYNSNTCVGG-ECRHYTQVVWRNSVRLGCARVKCNNNRGTF 59
                +  V+ W DE   + Y       G    HYTQVVW  S  +GCA  KC+++    
Sbjct: 73  QPFPWSGVVQAWYDEIKNFVYGIGAKPPGSVIGHYTQVVWYKSHLIGCASAKCSSS-KYL 131

Query: 60  VICSYDPPGNVAGK--RPY 76
            +C Y P GN+ G    PY
Sbjct: 132 YVCQYCPAGNIRGSIATPY 150

>2vzn_A Venom allergen 3; major FIRE ANT allergen, SOL I 3, secreted, cross- reactivity; 3.05A {Solenopsis invicta} Length = 218

 Score = 91.5 bits (227), Expect = 5e-25
 Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 9/85 (10%)

Query: 1   GDLTGTAAVKLWVDERPKYNYNSNTC------VGGECRHYTQVVWRNSVRLGCARVKC-- 52
              T    + LW +E   ++    +       +  +  HYTQ+VW  + ++GC R+    
Sbjct: 124 NKSTPNEMILLWYNEVKDFDNRWISSFPSDDNILMKVGHYTQIVWAKTTKIGCGRIMFKE 183

Query: 53  -NNNRGTFVICSYDPPGNVAGKRPY 76
            +N    +++C+Y P GNV G   Y
Sbjct: 184 PDNWTKHYLVCNYGPAGNVLGAPIY 208

>3nt8_A Ancylostoma secreted protein 1; pathogenesis related-1 protein, cysteine-rich secretory PROT domain, immune system; 2.20A {Necator americanus} Length = 424

 Score = 93.6 bits (232), Expect = 1e-24
 Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 10/83 (12%)

Query: 2   DLTGTAAVKLWVDERPKYNYNSNTCV--------GGECRHYTQVVWRNSVRLGCARVKCN 53
           +     A +LW +E  +Y    +  +          +  HYTQ+ W  + +LGCA V CN
Sbjct: 319 NKAAKQASQLWWNELKEYGVGPSNVLTTALWNRPNMQIGHYTQMAWDTTYKLGCAVVFCN 378

Query: 54  NNRGTFVICSYDPPGNVAGKRPY 76
           +   TF +C Y P GN  G   Y
Sbjct: 379 D--FTFGVCQYGPGGNYMGHVIY 399

>3nt8_A Ancylostoma secreted protein 1; pathogenesis related-1 protein, cysteine-rich secretory PROT domain, immune system; 2.20A {Necator americanus} Length = 424

 Score = 82.1 bits (202), Expect = 2e-20
 Identities = 14/76 (18%), Positives = 27/76 (35%), Gaps = 3/76 (3%)

Query: 2   DLTGTAAVKLWVDERPKYNYNSNTC-VGGECRHYTQVVWRNSVRLGCARVKCNNNRGTFV 60
            +     +  W     K     +    GG    ++ +V+  + +LGCA   C       V
Sbjct: 116 SVKIEPTLSGWWSGAKKNGVGPDNKYTGGGLFAFSNMVYSETTKLGCAYKVCGT--KLAV 173

Query: 61  ICSYDPPGNVAGKRPY 76
            C Y+  G +  +  +
Sbjct: 174 SCIYNGVGYITNQPMW 189

>3u3l_C Tablysin 15; CAP domain, alphavbeta3 integrin, salivary gland, protein BI; HET: PLM CIT; 1.57A {Tabanus yao} PDB: 3u3n_C* 3u3u_C* Length = 233

 Score = 55.9 bits (134), Expect = 2e-11
 Identities = 10/76 (13%), Positives = 21/76 (27%), Gaps = 8/76 (10%)

Query: 8   AVKLWVDERPKYNYN-----SNTCVGGECRHYTQVVWRNSVRLGCARVKCNNNRGT--FV 60
           AVK    ++                 G+ +     +      +GC      +       +
Sbjct: 126 AVKKGHLQKHNITREIIENYRENGPNGDVKELALAISDRVTAVGCGLTTWEDGAKARALL 185

Query: 61  ICSYDPPGNVAGKRPY 76
            C++    N  G+  Y
Sbjct: 186 TCNFS-SQNTRGRPVY 200

>3s6s_A AC-Asp-7; pathogenesis-related protein, SCP/TAPS, unknown function; 2.40A {Ancylostoma caninum} PDB: 3s6v_A 3s6u_A Length = 206

 Score = 47.0 bits (111), Expect = 3e-08
 Identities = 10/52 (19%), Positives = 17/52 (32%), Gaps = 6/52 (11%)

Query: 29  GECRHYTQVVWRNSVRLGCARVKCNNNRG----TFVICSYDPPGNVAGKRPY 76
            +     QVV+  + R GC+     N +        +C YD          +
Sbjct: 101 ADKNSMRQVVYPKATRFGCSGRLRRNKKTGMRRMDWVCVYDKKPK--DGESF 150

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	76
1cfe_A	135	Pathogenesis-related protein P14A; PR-1 proteins,	99.97
4aiw_A	154	Golgi-associated plant pathogenesis-related prote;	99.97
1qnx_A	209	VES V 5, antigen 5; allergen, vespid venom; 1.90A	99.94
2ddb_A	210	Pseudecin, channel blocker; crisp, snake venom, CN	99.94
1xta_A	221	Natrin 1; crisp, serine protease, ION channel bloc	99.93
1u53_A	196	Secreted protein Asp-2; antibiotic; 1.56A {Necator	99.93
2vzn_A	218	Venom allergen 3; major FIRE ANT allergen, SOL I 3	99.93
3q2u_A	205	Glioma pathogenesis-related protein 1; crisp, memb	99.93
3u3l_C	233	Tablysin 15; CAP domain, alphavbeta3 integrin, sal	99.92
3nt8_A	424	Ancylostoma secreted protein 1; pathogenesis relat	99.89
3nt8_A	424	Ancylostoma secreted protein 1; pathogenesis relat	99.88
3s6s_A	206	AC-Asp-7; pathogenesis-related protein, SCP/TAPS,	99.85
4ifa_A	339	Extracellular protein containing A SCP domain; vac	93.82

>1cfe_A Pathogenesis-related protein P14A; PR-1 proteins, plant defense; NMR {Solanum lycopersicum} SCOP: d.111.1.1

Probab=99.97  E-value=1.4e-31  Score=157.08  Aligned_cols=74  Identities=70%  Similarity=1.381  Sum_probs=67.5

Q ss_pred             CCCHHHHHHHHHhhcCCCCCCCCCCcCce-eccceeeeeccccEEEEEEEEccCCCcEEEEEEecCCCCCCCCCCC
Q 039461            2 DLTGTAAVKLWVDERPKYNYNSNTCVGGE-CRHYTQVVWRNSVRLGCARVKCNNNRGTFVICSYDPPGNVAGKRPY   76 (76)
Q Consensus         2 ~~~~~~~v~~W~~e~~~y~~~~~~~~~~~-~~hftq~vw~~t~~vGCa~~~c~~~~~~~~VC~Y~p~GN~~g~~~Y   76 (76)
                      +.++.++|+.|++|.++|+|..+.+..+. ++|||||||++|++||||++.|. ++.+++||+|+|+||+.|++||
T Consensus        61 ~~~~~~~v~~W~~E~~~y~~~~~~~~~~~~~gHfTQ~vW~~t~~vGCa~~~c~-~~~~~~VC~Y~p~GN~~g~~pY  135 (135)
T 1cfe_A           61 DFTGRAAVQLWVSERPSYNYATNQCVGGKKCRHYTQVVWRNSVRLGCGRARCN-NGWWFISCNYDPVGNWIGQRPY  135 (135)
T ss_dssp             SCCHHHHHHHHHTTGGGEEGGGTEECSSSCCSSHHHHHCTTCCEEEEEEEECT-TSSEEEEEECSSCCSCTTSCCC
T ss_pred             CCCHHHHHHHHHhHHhhCCCCCCCcCCCCcccceeeeEEccCcEEeEEEEEeC-CCCEEEEEEEeCCCCCCCCCCC
Confidence            46889999999999999999988776554 99999999999999999999994 3578999999999999999998

>4aiw_A Golgi-associated plant pathogenesis-related prote; lipid-binding protein, golgi apparatus, myristate; HET: I6P; 1.50A {Homo sapiens} PDB: 1smb_A*

Probab=99.97  E-value=7.2e-31  Score=157.06  Aligned_cols=73  Identities=27%  Similarity=0.632  Sum_probs=65.4

Q ss_pred             CCCHHHHHHHHHhhcCCCCCCCCCCcCceeccceeeeeccccEEEEEEEEccCCCcEEEEEEecCCCCCCCCCCC
Q 039461            2 DLTGTAAVKLWVDERPKYNYNSNTCVGGECRHYTQVVWRNSVRLGCARVKCNNNRGTFVICSYDPPGNVAGKRPY   76 (76)
Q Consensus         2 ~~~~~~~v~~W~~e~~~y~~~~~~~~~~~~~hftq~vw~~t~~vGCa~~~c~~~~~~~~VC~Y~p~GN~~g~~~Y   76 (76)
                      +.++.++|+.|++|.++|+|..+.+.. .++|||||||++|++||||++.|. ++..++||+|.|+||++|+.||
T Consensus        73 ~~~~~~~v~~W~~E~~~y~~~~~~~~~-~~gHfTQ~VW~~t~~vGCg~a~c~-~~~~~vVC~Y~P~GN~~g~~~y  145 (154)
T 4aiw_A           73 DQTGKEVADRWYSEIKNYNFQQPGFTS-GTGHFTAMVWKNTKKMGVGKASAS-DGSSFVVARYFPAGNVVNEGFF  145 (154)
T ss_dssp             CCCHHHHHHHHHGGGGGCCTTSCSCCT-TTHHHHHHHCTTCCEEEEEEEECT-TSCEEEEEEEESCCCCCSTTHH
T ss_pred             CCCHHHHHHHHHHHhhhcccCCCCcCC-CcCCeeeeehhhhceeeeEEEEcC-CCCEEEEEEEeCCCccCCccch
Confidence            457889999999999999999887753 399999999999999999999994 4568999999999999998776

>1qnx_A VES V 5, antigen 5; allergen, vespid venom; 1.90A {Vespula vulgaris} SCOP: d.111.1.1

Probab=99.94  E-value=2.8e-27  Score=146.93  Aligned_cols=74  Identities=31%  Similarity=0.648  Sum_probs=63.0

Q ss_pred             CCHHHHHHHHHhhcCCCCCCCCCCc-Cc-eeccceeeeeccccEEEEEEEEccCCC--cEEEEEEecCCCCCCCCCCC
Q 039461            3 LTGTAAVKLWVDERPKYNYNSNTCV-GG-ECRHYTQVVWRNSVRLGCARVKCNNNR--GTFVICSYDPPGNVAGKRPY   76 (76)
Q Consensus         3 ~~~~~~v~~W~~e~~~y~~~~~~~~-~~-~~~hftq~vw~~t~~vGCa~~~c~~~~--~~~~VC~Y~p~GN~~g~~~Y   76 (76)
                      .++.++|+.||+|.++|++..+... .. .++|||||||++|++||||++.|..++  ..++||+|+|+||+.|++||
T Consensus       129 ~~~~~av~~W~~E~~~y~~~~~~~~~~~~~~gHfTQ~VW~~t~~vGCa~~~c~~~~~~~~~~VC~Y~P~GN~~g~~~Y  206 (209)
T 1qnx_A          129 DDPVKLVKMWEDEVKDYNPKKKFSGNDFLKTGHYTQMVWANTKEVGCGSIKYIQEKWHKHYLVCNYGPSGNFKNEELY  206 (209)
T ss_dssp             CCHHHHHHHHHGGGGGCCTTSCGGGSCHHHHHHHHHHTCTTCCEEEEEEEEEEETTEEEEEEEEEEESCCCCTTSCSS
T ss_pred             ccHHHHHHHHHHhhhhcCCccCCCCCCCCcccchhhhhhhcCcEeeeEEEEEeCCCceeEEEEEEeCCCCCCCCCCCC
Confidence            3678999999999999999864221 12 399999999999999999999996443  46899999999999999998

>2ddb_A Pseudecin, channel blocker; crisp, snake venom, CNG channel, toxin; 1.90A {Pseudechis porphyriacus} PDB: 2epf_A 2dda_A

Probab=99.94  E-value=2.5e-27  Score=147.64  Aligned_cols=73  Identities=37%  Similarity=0.769  Sum_probs=64.5

Q ss_pred             CCHHHHHHHHHhhcCCCCCCCCCCcCce-eccceeeeeccccEEEEEEEEccCCCcEEEEEEecCCCCCCCC--CCC
Q 039461            3 LTGTAAVKLWVDERPKYNYNSNTCVGGE-CRHYTQVVWRNSVRLGCARVKCNNNRGTFVICSYDPPGNVAGK--RPY   76 (76)
Q Consensus         3 ~~~~~~v~~W~~e~~~y~~~~~~~~~~~-~~hftq~vw~~t~~vGCa~~~c~~~~~~~~VC~Y~p~GN~~g~--~~Y   76 (76)
                      .++.++|+.||+|.++|+|..+.+..+. ++|||||||++|++||||++.|.. +.+++||+|+|+||+.|+  +||
T Consensus        75 ~~~~~av~~W~~E~~~y~~~~~~~~~~~~~gHfTQ~VW~~t~~vGCa~~~c~~-~~~~~VC~Y~P~GN~~g~~~~pY  150 (210)
T 2ddb_A           75 FPWSGVVQAWYDEIKNFVYGIGAKPPGSVIGHYTQVVWYKSHLIGCASAKCSS-SKYLYVCQYCPAGNIRGSIATPY  150 (210)
T ss_dssp             CCHHHHHHHHHGGGGGEETTTEESSTTSCCHHHHHHTCTTCCEEEEEEEEEET-TEEEEEEEEESCSSSTTCTTCSS
T ss_pred             CCHHHHHHHHHHHhhhCCCCCCCCCCCCcccchhhhhhhhccEeeEEEEEcCC-CCEEEEEEeeCCCCCCCCccCCC
Confidence            3578999999999999999876554444 999999999999999999999954 378999999999999999  888

>1xta_A Natrin 1; crisp, serine protease, ION channel blocking, cobra, toxin; 1.58A {Naja atra} PDB: 2giz_A 1xx5_A 3mz8_A 1rc9_A 1wvr_A

Probab=99.93  E-value=5.7e-27  Score=146.93  Aligned_cols=74  Identities=39%  Similarity=0.781  Sum_probs=64.9

Q ss_pred             CCHHHHHHHHHhhcCCCCCCCCCCcCce-eccceeeeeccccEEEEEEEEccCC-CcEEEEEEecCCCCCCCC--CCC
Q 039461            3 LTGTAAVKLWVDERPKYNYNSNTCVGGE-CRHYTQVVWRNSVRLGCARVKCNNN-RGTFVICSYDPPGNVAGK--RPY   76 (76)
Q Consensus         3 ~~~~~~v~~W~~e~~~y~~~~~~~~~~~-~~hftq~vw~~t~~vGCa~~~c~~~-~~~~~VC~Y~p~GN~~g~--~~Y   76 (76)
                      .++.++|+.||+|.++|+|..+.+..+. ++|||||||++|++||||++.|..+ ..+++||+|.|+||+.|+  +||
T Consensus        84 ~~~~~av~~W~~E~~~y~~~~~~~~~~~~~gHfTQ~VW~~t~~vGCa~~~c~~~~~~~~~VC~Y~P~GN~~g~~~~pY  161 (221)
T 1xta_A           84 RTWTEIIHLWHDEYKNFVYGVGASPPGSVTGHYTQIVWYQTYRAGCAVSYCPSSAWSYFYVCQYCPSGNFQGKTATPY  161 (221)
T ss_dssp             CCHHHHHHHHHGGGGGEETTTEESSTTCCCHHHHHHTCTTCCEEEEEEEECTTSSSSEEEEEEEESCCCCTTTTTCSS
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCCCCCCCchhHHHHHHHHhcCEeeEEEEEcCCCCccEEEEEEEeCCcCCCCCcCCCc
Confidence            3578999999999999999876654444 9999999999999999999999543 368999999999999999  888

>1u53_A Secreted protein Asp-2; antibiotic; 1.56A {Necator americanus}

Probab=99.93  E-value=7.9e-27  Score=143.54  Aligned_cols=70  Identities=34%  Similarity=0.712  Sum_probs=61.9

Q ss_pred             HHHHHHHHHhhcCCCCCCC-CCCc----CceeccceeeeeccccEEEEEEEEccCCCcEEEEEEecCCCCCCCCCCC
Q 039461            5 GTAAVKLWVDERPKYNYNS-NTCV----GGECRHYTQVVWRNSVRLGCARVKCNNNRGTFVICSYDPPGNVAGKRPY   76 (76)
Q Consensus         5 ~~~~v~~W~~e~~~y~~~~-~~~~----~~~~~hftq~vw~~t~~vGCa~~~c~~~~~~~~VC~Y~p~GN~~g~~~Y   76 (76)
                      +.++|+.||+|.++|++.. +.+.    ...++|||||||++|++||||++.|.  ..+++||+|+|+||+.|++||
T Consensus       101 ~~~~v~~W~~E~~~y~~~~~~~~~~~~~~~~~ghfTQ~VW~~t~~vGCa~~~c~--~~~~~VC~Y~p~GN~~g~~~Y  175 (196)
T 1u53_A          101 AEQASKAWFGELAEKGVGQNLKLTGGLFSRGVGHYTQMVWQETVKLGCYVEACS--NMCYVVCQYGPAGNMMGKDIY  175 (196)
T ss_dssp             HHHHHHHHHTHHHHHCCCSCCBCCHHHHTTTCHHHHHHTCTTCCEEEEEEEECS--SCEEEEEEEESCCCCTTSBSS
T ss_pred             HHHHHHHHHHHHHHcCCCcccccCccccCccccchheeeecccCEEeeEEEEeC--CCEEEEEEeCCCCCCCCCcCC
Confidence            5789999999999999987 5553    12399999999999999999999994  368999999999999999998

>2vzn_A Venom allergen 3; major FIRE ANT allergen, SOL I 3, secreted, cross- reactivity; 3.05A {Solenopsis invicta}

Probab=99.93  E-value=1.6e-26  Score=144.32  Aligned_cols=73  Identities=29%  Similarity=0.673  Sum_probs=61.1

Q ss_pred             CHHHHHHHHHhhcCCCCCCCC---CCc--C-ceeccceeeeeccccEEEEEEEEccC-CC--cEEEEEEecCCCCCCCCC
Q 039461            4 TGTAAVKLWVDERPKYNYNSN---TCV--G-GECRHYTQVVWRNSVRLGCARVKCNN-NR--GTFVICSYDPPGNVAGKR   74 (76)
Q Consensus         4 ~~~~~v~~W~~e~~~y~~~~~---~~~--~-~~~~hftq~vw~~t~~vGCa~~~c~~-~~--~~~~VC~Y~p~GN~~g~~   74 (76)
                      ++.++|+.||+|.++|++...   +..  . ..++|||||||++|++||||++.|.. ++  ..++||+|+|+||++|++
T Consensus       127 ~~~~av~~W~~E~~~y~~~~~~~~~~~~~~~~~~gHfTQ~VW~~t~~vGCa~~~c~~~~~~~~~~vVC~Y~P~GN~~g~~  206 (218)
T 2vzn_A          127 TPNEMILLWYNEVKDFDNRWISSFPSDDNILMKVGHYTQIVWAKTTKIGCGRIMFKEPDNWTKHYLVCNYGPAGNVLGAP  206 (218)
T ss_dssp             CHHHHHHHHHGGGGGCCGGGSSSCCCCHHHHHHHHHHHHHTCTTCCEEEEEEEEEECTTSCEEEEEEEEEESCCCCTTSC
T ss_pred             hHHHHHHHHHHHHHhcCcccccCCCCCcccCCCcchHHHHHHHhcCEEeEEEEEEeCCCCeEEEEEEEEECCCCCCCCCc
Confidence            466999999999999998732   111  1 23899999999999999999999965 22  479999999999999999


Q ss_pred             CC
Q 039461           75 PY   76 (76)
Q Consensus        75 ~Y   76 (76)
                      ||
T Consensus       207 ~y  208 (218)
T 2vzn_A          207 IY  208 (218)
T ss_dssp             SS
T ss_pred             cc
Confidence            98

>3q2u_A Glioma pathogenesis-related protein 1; crisp, membrane protein; 1.85A {Homo sapiens} PDB: 3q2r_A

Probab=99.93  E-value=2.9e-26  Score=141.82  Aligned_cols=72  Identities=39%  Similarity=0.873  Sum_probs=63.3

Q ss_pred             CCHHHHHHHHHhhcCCCCCCCCCCcCceeccceeeeeccccEEEEEEEEccCC-------CcEEEEEEecCCCCCCCCCC
Q 039461            3 LTGTAAVKLWVDERPKYNYNSNTCVGGECRHYTQVVWRNSVRLGCARVKCNNN-------RGTFVICSYDPPGNVAGKRP   75 (76)
Q Consensus         3 ~~~~~~v~~W~~e~~~y~~~~~~~~~~~~~hftq~vw~~t~~vGCa~~~c~~~-------~~~~~VC~Y~p~GN~~g~~~   75 (76)
                      +++.++|+.|++|.++|+|..+.+. ..++|||||||++|++||||++.|...       ...++||+|.|+||+ ++.|
T Consensus        93 ~~~~~~v~~W~~E~~~y~~~~~~~~-~~~gHfTQ~VW~~t~~vGCa~~~c~~~~g~~~~~~~~~~VC~Y~P~GN~-~~~p  170 (205)
T 3q2u_A           93 FSVSSAITNWYDEIQDYDFKTRICK-KVCGHYTQVVWADSYKVGCAVQFCPKVSGFDALSNGAHFICNYGPGGNY-PTWP  170 (205)
T ss_dssp             CCHHHHHHHHHGGGGGEETTTTEES-SCCHHHHHHTCTTCCEEEEEEEEESCCBTCSSCCSEEEEEEEEESCCCC-SSCS
T ss_pred             CCHHHHHHHHHhHHHhcCCCCCCcc-chhHHHHHHHhhcccEeeeEEEEcCCCcCcccccccEEEEEEEECCCCc-CCCC
Confidence            5788999999999999999887663 349999999999999999999999532       257899999999998 8888


Q ss_pred             C
Q 039461           76 Y   76 (76)
Q Consensus        76 Y   76 (76)
                      |
T Consensus       171 Y  171 (205)
T 3q2u_A          171 Y  171 (205)
T ss_dssp             S
T ss_pred             C
Confidence            8

>3u3l_C Tablysin 15; CAP domain, alphavbeta3 integrin, salivary gland, protein BI; HET: PLM CIT; 1.57A {Tabanus yao} PDB: 3u3n_C* 3u3u_C*

Probab=99.92  E-value=1e-25  Score=141.78  Aligned_cols=71  Identities=13%  Similarity=0.228  Sum_probs=58.9

Q ss_pred             HHHHHHHHHhhcCCCCCCC----CCCcCc-eeccceeeeeccccEEEEEEEEccCCC--cEEEEEEecCCCCCCCCCCC
Q 039461            5 GTAAVKLWVDERPKYNYNS----NTCVGG-ECRHYTQVVWRNSVRLGCARVKCNNNR--GTFVICSYDPPGNVAGKRPY   76 (76)
Q Consensus         5 ~~~~v~~W~~e~~~y~~~~----~~~~~~-~~~hftq~vw~~t~~vGCa~~~c~~~~--~~~~VC~Y~p~GN~~g~~~Y   76 (76)
                      +.++|+.||+|.++|++..    +....+ .++|||||||++|++||||++.|..++  .+++||+|.| ||++|++||
T Consensus       123 ~~~av~~W~~E~~~y~~~~~~~~~~~~~~~~~gHfTQmVW~~t~~vGCa~~~c~~~~~~~~~~VC~Y~p-GN~~g~~~Y  200 (233)
T 3u3l_C          123 IDDAVKKGHLQKHNITREIIENYRENGPNGDVKELALAISDRVTAVGCGLTTWEDGAKARALLTCNFSS-QNTRGRPVY  200 (233)
T ss_dssp             HHHHHHHHHGGGGTCCHHHHHSCCSCC--CCCHHHHHHTCTTCCEEEEEEEEEEETTEEEEEEEEEESC-CCCTTSCSS
T ss_pred             HHHHHHHHHHHHhhhCHHHHhcCCCcccccchhhhHHHhhhcCCeeeeEEEEEEcCCeeEEEEEEECCC-CCCCCCcee
Confidence            5789999999999998652    111123 399999999999999999999996443  5799999998 999999998

>3nt8_A Ancylostoma secreted protein 1; pathogenesis related-1 protein, cysteine-rich secretory PROT domain, immune system; 2.20A {Necator americanus}

Probab=99.89  E-value=3.9e-24  Score=143.42  Aligned_cols=71  Identities=37%  Similarity=0.716  Sum_probs=60.8

Q ss_pred             CHHHHHHHHHhhcCCCCCCCCC-C------cCc-eeccceeeeeccccEEEEEEEEccCCCcEEEEEEecCCCCCCCCCC
Q 039461            4 TGTAAVKLWVDERPKYNYNSNT-C------VGG-ECRHYTQVVWRNSVRLGCARVKCNNNRGTFVICSYDPPGNVAGKRP   75 (76)
Q Consensus         4 ~~~~~v~~W~~e~~~y~~~~~~-~------~~~-~~~hftq~vw~~t~~vGCa~~~c~~~~~~~~VC~Y~p~GN~~g~~~   75 (76)
                      ++.++|+.||+|.++|++.... +      ..+ .++|||||||++|++||||++.|.  ...++||+|.|+||+.|++|
T Consensus       321 ~~~~~v~~W~~E~~~y~~~~~~~~~~~~~~~~~~~~gHfTQ~VW~~t~~vGCa~~~c~--~~~~~VC~Y~p~GN~~g~~~  398 (424)
T 3nt8_A          321 AAKQASQLWWNELKEYGVGPSNVLTTALWNRPNMQIGHYTQMAWDTTYKLGCAVVFCN--DFTFGVCQYGPGGNYMGHVI  398 (424)
T ss_dssp             HHHHHHHHHHTHHHHTCCCTTCBCCHHHHTCTTCCCHHHHHHHCTTCCEEEEEEEECS--SSEEEEEEEESCCCCTTSBS
T ss_pred             HHHHHHHHHHHHHHhcCCCCCcccccccccCCCCcccchHHHhhhhcceeeeEEEEeC--CCeEEEEEecCCCCcCCCCC
Confidence            4789999999999999986432 1      122 499999999999999999999994  34799999999999999999


Q ss_pred             C
Q 039461           76 Y   76 (76)
Q Consensus        76 Y   76 (76)
                      |
T Consensus       399 Y  399 (424)
T 3nt8_A          399 Y  399 (424)
T ss_dssp             S
T ss_pred             C
Confidence            8

>3nt8_A Ancylostoma secreted protein 1; pathogenesis related-1 protein, cysteine-rich secretory PROT domain, immune system; 2.20A {Necator americanus}

Probab=99.88  E-value=1.1e-23  Score=141.24  Aligned_cols=70  Identities=20%  Similarity=0.442  Sum_probs=61.6

Q ss_pred             HHHHHHHHHhhcCCCCCCCCC-CcCceeccceeeeeccccEEEEEEEEccCCCcEEEEEEecCCCCCCCCCCC
Q 039461            5 GTAAVKLWVDERPKYNYNSNT-CVGGECRHYTQVVWRNSVRLGCARVKCNNNRGTFVICSYDPPGNVAGKRPY   76 (76)
Q Consensus         5 ~~~~v~~W~~e~~~y~~~~~~-~~~~~~~hftq~vw~~t~~vGCa~~~c~~~~~~~~VC~Y~p~GN~~g~~~Y   76 (76)
                      +.++|+.||+|.++|++.... +....++|||||||++|++||||++.|..  .+++||+|.|+||+.|++||
T Consensus       119 ~~~~v~~W~~E~~~y~~~~~~~~~~~~~ghfTqmvw~~t~~vGCa~~~c~~--~~~~VC~Y~p~GN~~g~~~Y  189 (424)
T 3nt8_A          119 IEPTLSGWWSGAKKNGVGPDNKYTGGGLFAFSNMVYSETTKLGCAYKVCGT--KLAVSCIYNGVGYITNQPMW  189 (424)
T ss_dssp             HHHHHHHHHTHHHHHCCCTTCBCCCTTCHHHHHHHCTTCCEEEEEEEEETT--EEEEEEEESSCCCSTTCBSS
T ss_pred             HHHHHHHHHHHHHHcCCcccccCCCcchHHHHHHHHHhcCeeceEEEEeCC--cEEEEEEECCCCCccccccc
Confidence            678999999999999998533 32234999999999999999999999943  78999999999999999998

>3s6s_A AC-Asp-7; pathogenesis-related protein, SCP/TAPS, unknown function; 2.40A {Ancylostoma caninum} PDB: 3s6v_A 3s6u_A

Probab=99.85  E-value=4e-22  Score=124.11  Aligned_cols=55  Identities=18%  Similarity=0.294  Sum_probs=48.1

Q ss_pred             HHHHHHHHhhcCCCCCCCCCCcCceeccceeeeeccccEEEEEEEEccC---CC-cEEEEEEecCCCCCCCCCCC
Q 039461            6 TAAVKLWVDERPKYNYNSNTCVGGECRHYTQVVWRNSVRLGCARVKCNN---NR-GTFVICSYDPPGNVAGKRPY   76 (76)
Q Consensus         6 ~~~v~~W~~e~~~y~~~~~~~~~~~~~hftq~vw~~t~~vGCa~~~c~~---~~-~~~~VC~Y~p~GN~~g~~~Y   76 (76)
                      .++|+.||+|              .++|||||||++|++||||++.|..   ++ .+++||+|.|+|  .|++||
T Consensus        92 ~~av~~W~~E--------------~~gHfTQmVW~~Tt~VGCa~~~C~~~~~~~~~~~vVCnY~p~G--~g~~~Y  150 (206)
T 3s6s_A           92 LKEILETFSA--------------DKNSMRQVVYPKATRFGCSGRLRRNKKTGMRRMDWVCVYDKKP--KDGESF  150 (206)
T ss_dssp             HHHHHHHHTT--------------CHHHHHHHHCTTCCEEEEEEEECC-------EEEEEEEESCCC--CTTCCC
T ss_pred             HHHHHHHHhh--------------hhhhHHHHHHHhhceeeEEEEEecCcCCCCceEEEEEEeCCCC--CCCCCc
Confidence            4899999999              4799999999999999999999941   22 589999999988  899998

>4ifa_A Extracellular protein containing A SCP domain; vaccine candi virulence, pathogenesis, center for structural genomics of infectious diseases; HET: MSE; 1.50A {Bacillus anthracis}

Probab=93.82  E-value=0.033  Score=36.77  Aligned_cols=35  Identities=20%  Similarity=0.309  Sum_probs=29.0

Q ss_pred             CCCCHHHHHHHHHhhcCCCCCCCCCCcCceeccceeeeeccccEEEEEEE
Q 039461            1 GDLTGTAAVKLWVDERPKYNYNSNTCVGGECRHYTQVVWRNSVRLGCARV   50 (76)
Q Consensus         1 ~~~~~~~~v~~W~~e~~~y~~~~~~~~~~~~~hftq~vw~~t~~vGCa~~   50 (76)
                      |..++.++++.|++               ..+|..+|+|...+++|+|+.
T Consensus       294 G~~s~~~av~~Wmn---------------SpGHr~NIL~~~~t~iGvGv~  328 (339)
T 4ifa_A          294 QHSDGVAALQGWLN---------------SEGHRKNLLNEQFTGLGVGVY  328 (339)
T ss_dssp             SCSSHHHHHHHHHT---------------SHHHHHHHTCTTCCEEEEEEE
T ss_pred             eCCCHHHHHHHHhC---------------CHhHHHHHhCCCCCEEEEEEE
Confidence            34567888888873               259999999999999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	76
d1qnxa_	209	d.111.1.1 (A:) Insect allergen 5 (AG5) {Yellow jac	2e-18
d1cfea_	135	d.111.1.1 (A:) Pathogenesis-related protein 1 (PR1	5e-18
d1rc9a1	164	d.111.1.1 (A:1-164) Cysteine-rich secretory protei	2e-16
d1smba_	149	d.111.1.1 (A:) Golgi-associated PR-1 protein {Huma	3e-14

>d1qnxa_ d.111.1.1 (A:) Insect allergen 5 (AG5) {Yellow jacket (Vespula vulgaris), Ves v 5 [TaxId: 7454]} Length = 209

class: Alpha and beta proteins (a+b)
fold: PR-1-like
superfamily: PR-1-like
family: PR-1-like
domain: Insect allergen 5 (AG5)
species: Yellow jacket (Vespula vulgaris), Ves v 5 [TaxId: 7454]

 Score = 73.0 bits (178), Expect = 2e-18
 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 4/77 (5%)

Query: 4   TGTAAVKLWVDERPKYNYNSNTCV--GGECRHYTQVVWRNSVRLGCARVKCNNNRG--TF 59
                VK+W DE   YN           +  HYTQ+VW N+  +GC  +K    +    +
Sbjct: 130 DPVKLVKMWEDEVKDYNPKKKFSGNDFLKTGHYTQMVWANTKEVGCGSIKYIQEKWHKHY 189

Query: 60  VICSYDPPGNVAGKRPY 76
           ++C+Y P GN   +  Y
Sbjct: 190 LVCNYGPSGNFKNEELY 206

>d1cfea_ d.111.1.1 (A:) Pathogenesis-related protein 1 (PR1) {Tomato (Lycopersicon esculentum), P14a [TaxId: 4081]} Length = 135

class: Alpha and beta proteins (a+b)
fold: PR-1-like
superfamily: PR-1-like
family: PR-1-like
domain: Pathogenesis-related protein 1 (PR1)
species: Tomato (Lycopersicon esculentum), P14a [TaxId: 4081]

 Score = 70.3 bits (171), Expect = 5e-18
 Identities = 52/76 (68%), Positives = 59/76 (77%), Gaps = 2/76 (2%)

Query: 2   DLTGTAAVKLWVDERPKYNYNSNTCVGGE-CRHYTQVVWRNSVRLGCARVKCNNNRGTFV 60
           D TG AAV+LWV ERP YNY +N CVGG+ CRHYTQVVWRNSVRLGC R +CNN    F+
Sbjct: 61  DFTGRAAVQLWVSERPSYNYATNQCVGGKKCRHYTQVVWRNSVRLGCGRARCNNG-WWFI 119

Query: 61  ICSYDPPGNVAGKRPY 76
            C+YDP GN  G+RPY
Sbjct: 120 SCNYDPVGNWIGQRPY 135

>d1rc9a1 d.111.1.1 (A:1-164) Cysteine-rich secretory protein (SteCRISP) {Chinese green tree viper (Trimeresurus stejnegeri) [TaxId: 39682]} Length = 164

class: Alpha and beta proteins (a+b)
fold: PR-1-like
superfamily: PR-1-like
family: PR-1-like
domain: Cysteine-rich secretory protein (SteCRISP)
species: Chinese green tree viper (Trimeresurus stejnegeri) [TaxId: 39682]

 Score = 67.2 bits (163), Expect = 2e-16
 Identities = 27/80 (33%), Positives = 35/80 (43%), Gaps = 4/80 (5%)

Query: 1   GDLTGTAAVKLWVDERPKYNYNSNTCVG-GECRHYTQVVWRNSVRLGCARVKCNNN-RGT 58
             +  T  +  W DE   + Y            HYTQ+VW  S R+GCA   C ++    
Sbjct: 82  YPMKWTDIIHAWHDEYKDFKYGVGADPPNAVTGHYTQIVWYKSYRIGCAAAYCPSSPYSY 141

Query: 59  FVICSYDPPGNVAGK--RPY 76
           F +C Y P GN  GK   PY
Sbjct: 142 FFVCQYCPAGNFIGKTATPY 161

>d1smba_ d.111.1.1 (A:) Golgi-associated PR-1 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a+b)
fold: PR-1-like
superfamily: PR-1-like
family: PR-1-like
domain: Golgi-associated PR-1 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.7 bits (146), Expect = 3e-14
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 2/76 (2%)

Query: 1   GDLTGTAAVKLWVDERPKYNYNSNTCVGGECRHYTQVVWRNSVRLGCARVKCNNNRGTFV 60
            D TG      W  E   YN+       G   H+T +VW+N+ ++G  +   ++   +FV
Sbjct: 69  YDQTGKEVADRWYSEIKNYNFQQPGFTSG-TGHFTAMVWKNTKKMGVGKASASDG-SSFV 126

Query: 61  ICSYDPPGNVAGKRPY 76
           +  Y P GNV  +  +
Sbjct: 127 VARYFPAGNVVNEGFF 142

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	76
d1cfea_	135	Pathogenesis-related protein 1 (PR1) {Tomato (Lyco	99.97
d1rc9a1	164	Cysteine-rich secretory protein (SteCRISP) {Chines	99.95
d1smba_	149	Golgi-associated PR-1 protein {Human (Homo sapiens	99.94
d1qnxa_	209	Insect allergen 5 (AG5) {Yellow jacket (Vespula vu	99.93

>d1cfea_ d.111.1.1 (A:) Pathogenesis-related protein 1 (PR1) {Tomato (Lycopersicon esculentum), P14a [TaxId: 4081]}

class: Alpha and beta proteins (a+b)
fold: PR-1-like
superfamily: PR-1-like
family: PR-1-like
domain: Pathogenesis-related protein 1 (PR1)
species: Tomato (Lycopersicon esculentum), P14a [TaxId: 4081]

Probab=99.97  E-value=3.5e-32  Score=158.22  Aligned_cols=75  Identities=71%  Similarity=1.392  Sum_probs=67.3

Q ss_pred             CCCCHHHHHHHHHhhcCCCCCCCCCCcCce-eccceeeeeccccEEEEEEEEccCCCcEEEEEEecCCCCCCCCCCC
Q 039461            1 GDLTGTAAVKLWVDERPKYNYNSNTCVGGE-CRHYTQVVWRNSVRLGCARVKCNNNRGTFVICSYDPPGNVAGKRPY   76 (76)
Q Consensus         1 ~~~~~~~~v~~W~~e~~~y~~~~~~~~~~~-~~hftq~vw~~t~~vGCa~~~c~~~~~~~~VC~Y~p~GN~~g~~~Y   76 (76)
                      +++++.++++.|++|.++|+|..+.+.... ++|||||||++|++||||++.|. .+.++|||+|.|+||+.|++||
T Consensus        60 ~~~~~~~av~~W~~E~~~y~~~~~~~~~~~~~ghftQmvW~~t~~vGCa~~~c~-~~~~~vVC~Y~P~GN~~g~~pY  135 (135)
T d1cfea_          60 GDFTGRAAVQLWVSERPSYNYATNQCVGGKKCRHYTQVVWRNSVRLGCGRARCN-NGWWFISCNYDPVGNWIGQRPY  135 (135)
T ss_dssp             SSCCHHHHHHHHHTTGGGEEGGGTEECSSSCCSSHHHHHCTTCCEEEEEEEECT-TSSEEEEEECSSCCSCTTSCCC
T ss_pred             CCCCHHHHHHHHHhhccccccccccCCCCcccchhheeeehhheEeeEEEEEEC-CCCEEEEEEEeCCCCcCCcCCC
Confidence            357889999999999999999887765444 99999999999999999999994 4568899999999999999999

>d1rc9a1 d.111.1.1 (A:1-164) Cysteine-rich secretory protein (SteCRISP) {Chinese green tree viper (Trimeresurus stejnegeri) [TaxId: 39682]}

class: Alpha and beta proteins (a+b)
fold: PR-1-like
superfamily: PR-1-like
family: PR-1-like
domain: Cysteine-rich secretory protein (SteCRISP)
species: Chinese green tree viper (Trimeresurus stejnegeri) [TaxId: 39682]

Probab=99.95  E-value=2.2e-28  Score=145.54  Aligned_cols=75  Identities=36%  Similarity=0.762  Sum_probs=65.3

Q ss_pred             CCCHHHHHHHHHhhcCCCCCCCCCCcCce-eccceeeeeccccEEEEEEEEccCCC-cEEEEEEecCCCCCCCC--CCC
Q 039461            2 DLTGTAAVKLWVDERPKYNYNSNTCVGGE-CRHYTQVVWRNSVRLGCARVKCNNNR-GTFVICSYDPPGNVAGK--RPY   76 (76)
Q Consensus         2 ~~~~~~~v~~W~~e~~~y~~~~~~~~~~~-~~hftq~vw~~t~~vGCa~~~c~~~~-~~~~VC~Y~p~GN~~g~--~~Y   76 (76)
                      +.++.++|+.|++|..+|++....+..+. ++|||||||++|++||||++.|..++ .++|||+|.|+||+.|+  .||
T Consensus        83 ~~~~~~~v~~W~~E~~~~~~~~~~~~~~~~~ghftqmvW~~t~~vGCa~~~c~~~~~~~~vVC~Y~P~GN~~g~~~~~Y  161 (164)
T d1rc9a1          83 PMKWTDIIHAWHDEYKDFKYGVGADPPNAVTGHYTQIVWYKSYRIGCAAAYCPSSPYSYFFVCQYCPAGNFIGKTATPY  161 (164)
T ss_dssp             CCCHHHHHHHHHGGGGGEETTTEESSTTCCCHHHHHHTCTTCCEEEEEEEECTTSSSSEEEEEEEESCCCCTTCTTCSS
T ss_pred             CCCHHHHHHHHhhhhheeecCCCCCCCcchhhHHHHHhhhcccEEeEEEEEeCCCCceEEEEEEEcCCCccCCCcCCCc
Confidence            45688999999999999999887665554 99999999999999999999995444 57899999999999997  567

>d1smba_ d.111.1.1 (A:) Golgi-associated PR-1 protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: PR-1-like
superfamily: PR-1-like
family: PR-1-like
domain: Golgi-associated PR-1 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.4e-27  Score=140.11  Aligned_cols=73  Identities=27%  Similarity=0.632  Sum_probs=64.6

Q ss_pred             CCCHHHHHHHHHhhcCCCCCCCCCCcCceeccceeeeeccccEEEEEEEEccCCCcEEEEEEecCCCCCCCCCCC
Q 039461            2 DLTGTAAVKLWVDERPKYNYNSNTCVGGECRHYTQVVWRNSVRLGCARVKCNNNRGTFVICSYDPPGNVAGKRPY   76 (76)
Q Consensus         2 ~~~~~~~v~~W~~e~~~y~~~~~~~~~~~~~hftq~vw~~t~~vGCa~~~c~~~~~~~~VC~Y~p~GN~~g~~~Y   76 (76)
                      +.++.++|+.|++|.++|+|..+.+. ..++|||||||++|++||||++.|. ++..++||+|.|+||+.|+.||
T Consensus        70 ~~~~~~~v~~W~~e~~~y~~~~~~~~-~~~ghftqmvw~~t~~vGCg~a~c~-~~~~~~VC~Y~p~GN~~~~~~y  142 (149)
T d1smba_          70 DQTGKEVADRWYSEIKNYNFQQPGFT-SGTGHFTAMVWKNTKKMGVGKASAS-DGSSFVVARYFPAGNVVNEGFF  142 (149)
T ss_dssp             CCCHHHHHHHHHGGGGGCCTTSCCCC-GGGHHHHHHHCTTCCEEEEEEEECT-TSCEEEEEEEESCCCCCSTTHH
T ss_pred             CccHHHHHHHHHHHHhhcccCCCCcc-cccchhhheecCCceEeeEEEEEcC-CCCEEEEEEeeCCCCcCCcccc
Confidence            34678999999999999999988764 3499999999999999999999994 4468899999999999999876

>d1qnxa_ d.111.1.1 (A:) Insect allergen 5 (AG5) {Yellow jacket (Vespula vulgaris), Ves v 5 [TaxId: 7454]}

class: Alpha and beta proteins (a+b)
fold: PR-1-like
superfamily: PR-1-like
family: PR-1-like
domain: Insect allergen 5 (AG5)
species: Yellow jacket (Vespula vulgaris), Ves v 5 [TaxId: 7454]

Probab=99.93  E-value=5.5e-27  Score=143.63  Aligned_cols=74  Identities=31%  Similarity=0.631  Sum_probs=64.4

Q ss_pred             CCHHHHHHHHHhhcCCCCCCCCCCcC-ce-eccceeeeeccccEEEEEEEEccCCC--cEEEEEEecCCCCCCCCCCC
Q 039461            3 LTGTAAVKLWVDERPKYNYNSNTCVG-GE-CRHYTQVVWRNSVRLGCARVKCNNNR--GTFVICSYDPPGNVAGKRPY   76 (76)
Q Consensus         3 ~~~~~~v~~W~~e~~~y~~~~~~~~~-~~-~~hftq~vw~~t~~vGCa~~~c~~~~--~~~~VC~Y~p~GN~~g~~~Y   76 (76)
                      .++.++|+.|++|..+|++....+.. .. ++|||||||++|++||||++.|..++  .++|||+|+|+||+.|++||
T Consensus       129 ~~~~~~v~~W~~E~~~~~~~~~~~~~~~~~~ghftQmvw~~t~~VGCa~~~c~~~~~~~~~vVC~Y~p~GN~~g~~~Y  206 (209)
T d1qnxa_         129 DDPVKLVKMWEDEVKDYNPKKKFSGNDFLKTGHYTQMVWANTKEVGCGSIKYIQEKWHKHYLVCNYGPSGNFKNEELY  206 (209)
T ss_dssp             CCHHHHHHHHHGGGGGCCTTSCGGGSCHHHHHHHHHHTCTTCCEEEEEEEEEEETTEEEEEEEEEEESCCCCTTSCSS
T ss_pred             ccHHHHHHHHHHHhhhcCCCcccccCCccccchhHHHhhhhhCEEeEEEEEEcCCCCCEEEEEEEECCCCCCCCCCCC
Confidence            45789999999999999988765543 23 99999999999999999999996544  57899999999999999998