Citrus Sinensis ID: 039547

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60-------
Protein Sequence
EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKRKHEEGGLMVPMKKNLERDLRIVKNH
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHcHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHcHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHcc
Coil and Loop (DISEMBL)
EDRLICRLFAISESRWSVIAahlpgrtdnetnnyykntklkrkheegglmvpmkkNLERDLRIVKNH
Flexible Loop (DISEMBL)
EDRLICRLfaisesrwsviaahlpgrtdnetnnyykntklkrkheegglmvpmkknlerdlrivknh
Low Complexity Region (SEG)
EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKRKHEEGGLMVPMKKNLERDLRIVKNH
Disordered region (IsUnstruct)
***LICRLFAISESRWSVIAAHLPG******************************************
Disordered Region (DISOPRED)
EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKR*************************
Disordered Region (DISEMBL)
EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKRKHEEGGLMVPMKKNLERDLRIVKNH
Disordered Region (DISPRO)
EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKRKHEEGGLMVPMKKNLERDLRIV*N*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKRKHEEGGLMVPMKKNLERDLRIVKNH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	67	2.2.26 [Sep-21-2011]
Q9FG68	329	Transcription factor RAX1	yes	no	0.626	0.127	0.674	2e-09
Q9SJL7	298	Transcription factor RAX2	no	no	0.626	0.140	0.674	4e-08
Q9M2Y9	310	Transcription factor RAX3	no	no	0.626	0.135	0.581	2e-07
Q0JIC2	553	Transcription factor GAMY	no	no	0.761	0.092	0.480	3e-07
A2WW87	553	Transcription factor GAMY	N/A	no	0.761	0.092	0.480	3e-07
P80073	421	Myb-related protein Pp2 O	N/A	no	0.716	0.114	0.551	7e-07
P20025	255	Myb-related protein Zm38	N/A	no	0.626	0.164	0.558	1e-06
P52551	743	Myb-related protein B OS=	N/A	no	0.731	0.065	0.48	2e-06
Q8GWP0	360	Transcription factor MYB3	no	no	0.716	0.133	0.489	3e-06
P10244	700	Myb-related protein B OS=	yes	no	0.791	0.075	0.444	4e-06

>sp|Q9FG68|RAX1_ARATH Transcription factor RAX1 OS=Arabidopsis thaliana GN=RAX1 PE=2 SV=1

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 1/43 (2%)

Query: 1   EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKRK 43
           EDR+I  LFA   SRWS+IAAHLPGRTDN+  NY+ NTKL++K
Sbjct: 75  EDRIIFSLFAAIGSRWSIIAAHLPGRTDNDIKNYW-NTKLRKK 116

Transcription activator of genes involved in the regulation of meristematic competence, such as CUC2. Positively regulates axillary meristems (AMs) formation and development, especially at early phases of vegetative growth, probably by specifying a stem cell niche for AM formation. Modulates the negative regulation mediated by gibberellic acid on the timing of developmental phase transitions.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SJL7|RAX2_ARATH Transcription factor RAX2 OS=Arabidopsis thaliana GN=RAX2 PE=1 SV=1

 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/43 (67%), Positives = 33/43 (76%), Gaps = 1/43 (2%)

Query: 1   EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKRK 43
           ED +I  LFA   SRWSVIAAHL GRTDN+  NY+ NTKLK+K
Sbjct: 75  EDNIIYSLFASIGSRWSVIAAHLQGRTDNDIKNYW-NTKLKKK 116

Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M2Y9|RAX3_ARATH Transcription factor RAX3 OS=Arabidopsis thaliana GN=RAX3 PE=2 SV=1

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/43 (58%), Positives = 33/43 (76%), Gaps = 1/43 (2%)

Query: 1   EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKRK 43
           E+ +IC L+    SRWS+IAA LPGRTDN+  NY+ NT+LK+K
Sbjct: 75  EENIICSLYLTIGSRWSIIAAQLPGRTDNDIKNYW-NTRLKKK 116

Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0JIC2|GAM1_ORYSJ Transcription factor GAMYB OS=Oryza sativa subsp. japonica GN=GAM1 PE=2 SV=1

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/52 (48%), Positives = 36/52 (69%), Gaps = 1/52 (1%)

Query: 1   EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKRKHEEGGLMVP 52
           E+RLI +L +   ++W+ +AAHLPGRTDNE  NY+ NT++KR    G  + P
Sbjct: 102 EERLIIQLHSKMGNKWARMAAHLPGRTDNEIKNYW-NTRIKRCQRAGLPIYP 152

Transcriptional activator of gibberellin-dependent alpha-amylase expression in aleurone cells. Involved in pollen and floral organs development. May bind to the 5'-TAACAAA-3' box of alpha-amylase promoter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2WW87|GAM1_ORYSI Transcription factor GAMYB OS=Oryza sativa subsp. indica GN=GAM1 PE=2 SV=1

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/52 (48%), Positives = 36/52 (69%), Gaps = 1/52 (1%)

Query: 1   EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKRKHEEGGLMVP 52
           E+RLI +L +   ++W+ +AAHLPGRTDNE  NY+ NT++KR    G  + P
Sbjct: 102 EERLIIQLHSKMGNKWARMAAHLPGRTDNEIKNYW-NTRIKRCQRAGLPIYP 152

Transcriptional activator of gibberellin-dependent alpha-amylase expression in aleurone cells. Involved in pollen and floral organs development. May bind to the 5'-TAACAAA-3' box of alpha-amylase promoter.

Oryza sativa subsp. indica (taxid: 39946)

>sp|P80073|MYB2_PHYPA Myb-related protein Pp2 OS=Physcomitrella patens subsp. patens GN=PP2 PE=2 SV=1

 Score = 52.4 bits (124), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/49 (55%), Positives = 33/49 (67%), Gaps = 1/49 (2%)

Query: 1   EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKRKHEEGGL 49
           E+ LI  L A   +RWS IAA LPGRTDNE  NY+ NT+LK++    GL
Sbjct: 74  EENLILDLHATLGNRWSRIAAQLPGRTDNEIKNYW-NTRLKKRLRSQGL 121

Possible transcription activator.

Physcomitrella patens subsp. patens (taxid: 145481)

>sp|P20025|MYB38_MAIZE Myb-related protein Zm38 OS=Zea mays PE=2 SV=1

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/43 (55%), Positives = 33/43 (76%), Gaps = 1/43 (2%)

Query: 1   EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKRK 43
           ED LI +L ++  ++WS+IAA LPGRTDNE  NY+ NT ++RK
Sbjct: 74  EDDLIVKLHSLLGNKWSLIAARLPGRTDNEIKNYW-NTHVRRK 115

Transcription factor that regulates negatively genes involved in anthocyanin biosynthesis.

Zea mays (taxid: 4577)

>sp|P52551|MYBB_XENLA Myb-related protein B OS=Xenopus laevis GN=mybl2 PE=2 SV=2

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/50 (48%), Positives = 34/50 (68%), Gaps = 1/50 (2%)

Query: 1   EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKRKHEEGGLM 50
           EDR+IC+   +  +RW+ IA  LPGRTDN   N++ N+ +KRK E GG +
Sbjct: 142 EDRIICQAHKVLGNRWAEIAKLLPGRTDNAVKNHW-NSTIKRKVETGGFL 190

Xenopus laevis (taxid: 8355)

>sp|Q8GWP0|MYB39_ARATH Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1

 Score = 50.8 bits (120), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/49 (48%), Positives = 34/49 (69%), Gaps = 1/49 (2%)

Query: 1   EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKRKHEEGGL 49
           E+  I RL A+  ++WS IA HLPGRTDNE  NY+ NT +++K  + G+
Sbjct: 75  EESTIVRLHALLGNKWSKIAGHLPGRTDNEIKNYW-NTHMRKKLLQMGI 122

Arabidopsis thaliana (taxid: 3702)

>sp|P10244|MYBB_HUMAN Myb-related protein B OS=Homo sapiens GN=MYBL2 PE=1 SV=1

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 1/54 (1%)

Query: 1   EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKRKHEEGGLMVPMK 54
           EDR+IC    +  +RW+ IA  LPGRTDN   N++ N+ +KRK + GG +   K
Sbjct: 142 EDRIICEAHKVLGNRWAEIAKMLPGRTDNAVKNHW-NSTIKRKVDTGGFLSESK 194

Transcription factor involved in the regulation of cell survival, proliferation, and differentiation. Transactivates the expression of the CLU gene.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	67
414589011	295	TPA: putative MYB DNA-binding domain sup	0.686	0.155	0.659	3e-09
134026414	313	transcription factor DcMYB4 [Daucus caro	0.761	0.162	0.615	6e-09
449496280	296	PREDICTED: transcription repressor MYB6-	0.626	0.141	0.697	8e-09
315115075	262	DNA-binding transcription factor blind 2	0.626	0.160	0.697	9e-09
224092242	302	predicted protein [Populus trichocarpa]	0.820	0.182	0.535	9e-09
449456158	144	PREDICTED: transcription factor RAX3-lik	0.626	0.291	0.697	1e-08
110931830	228	MYB transcription factor MYB78 [Glycine	0.776	0.228	0.542	1e-08
224118410	337	predicted protein [Populus trichocarpa]	0.626	0.124	0.697	1e-08
351722012	233	transcription factor MYBJ7 [Glycine max]	0.776	0.223	0.542	1e-08
224106830	338	predicted protein [Populus trichocarpa]	0.626	0.124	0.697	1e-08

>gi|414589011|tpg|DAA39582.1| TPA: putative MYB DNA-binding domain superfamily protein [Zea mays]

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/47 (65%), Positives = 36/47 (76%), Gaps = 1/47 (2%)

Query: 1   EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKRKHEEG 47
           EDR+IC LFA   SRWS+IAA LPGRTDN+  NY+ NTKLK+K   G
Sbjct: 75  EDRIICSLFATIGSRWSIIAAQLPGRTDNDIKNYW-NTKLKKKLVHG 120

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|134026414|dbj|BAF49444.1| transcription factor DcMYB4 [Daucus carota]

 Score = 65.1 bits (157), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/52 (61%), Positives = 38/52 (73%), Gaps = 1/52 (1%)

Query: 1   EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKRKHEEGGLMVP 52
           EDR+IC LFA   SRWS+IA  LPGRTDN+  NY+ NTKLK+K     LM+P
Sbjct: 75  EDRIICTLFANIGSRWSIIAGQLPGRTDNDIKNYW-NTKLKKKLLMSSLMLP 125

Source: Daucus carota

Species: Daucus carota

Genus: Daucus

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449496280|ref|XP_004160092.1| PREDICTED: transcription repressor MYB6-like [Cucumis sativus]

 Score = 64.7 bits (156), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 1/43 (2%)

Query: 1   EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKRK 43
           EDR+IC LFA   SRWS+IAA LPGRTDN+  NY+ NTKLK+K
Sbjct: 75  EDRIICTLFATIGSRWSIIAAQLPGRTDNDIKNYW-NTKLKKK 116

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|315115075|gb|ADT80571.1| DNA-binding transcription factor blind 2 [Gossypium hirsutum]

 Score = 64.3 bits (155), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 30/43 (69%), Positives = 36/43 (83%), Gaps = 1/43 (2%)

Query: 1   EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKRK 43
           EDR+IC LFA   SRWS+IAA+LPGRTDN+  NY+ NTKLK+K
Sbjct: 75  EDRIICNLFASIGSRWSIIAANLPGRTDNDIKNYW-NTKLKKK 116

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224092242|ref|XP_002309524.1| predicted protein [Populus trichocarpa] gi|222855500|gb|EEE93047.1| predicted protein [Populus trichocarpa]

 Score = 64.3 bits (155), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 30/56 (53%), Positives = 40/56 (71%), Gaps = 1/56 (1%)

Query: 1   EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKRKHEEGGLMVPMKKN 56
           ED +IC L++   SRWS+IAA LPGRTDN+  NY+ NTKLK+K   G + + +K N
Sbjct: 75  EDNIICTLYSQMGSRWSLIAAQLPGRTDNDVKNYW-NTKLKKKILAGKISLTIKNN 129

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456158|ref|XP_004145817.1| PREDICTED: transcription factor RAX3-like [Cucumis sativus]

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 1/43 (2%)

Query: 1   EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKRK 43
           EDR+IC LFA   SRWS+IAA LPGRTDN+  NY+ NTKLK+K
Sbjct: 75  EDRIICTLFATIGSRWSIIAAQLPGRTDNDIKNYW-NTKLKKK 116

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110931830|gb|ABH02914.1| MYB transcription factor MYB78 [Glycine max]

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 42/59 (71%), Gaps = 7/59 (11%)

Query: 1   EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKRKHEEGGLMVPMKKNLER 59
           ED++IC LFA   SRWS+IA+ LPGRTDN+  NY+ NTKLK+K      M+ M  +L+R
Sbjct: 75  EDKIICSLFASIGSRWSIIASQLPGRTDNDIKNYW-NTKLKKK------MMAMNPSLQR 126

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118410|ref|XP_002331475.1| predicted protein [Populus trichocarpa] gi|222873553|gb|EEF10684.1| predicted protein [Populus trichocarpa]

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 1/43 (2%)

Query: 1   EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKRK 43
           EDR+IC LFA   SRWS+IAA LPGRTDN+  NY+ NTKLK+K
Sbjct: 75  EDRVICSLFASIGSRWSIIAAQLPGRTDNDIKNYW-NTKLKKK 116

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722012|ref|NP_001237485.1| transcription factor MYBJ7 [Glycine max] gi|114384143|gb|ABI73973.1| transcription factor MYBJ7 [Glycine max]

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 42/59 (71%), Gaps = 7/59 (11%)

Query: 1   EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKRKHEEGGLMVPMKKNLER 59
           ED++IC LFA   SRWS+IA+ LPGRTDN+  NY+ NTKLK+K      M+ M  +L+R
Sbjct: 75  EDKIICSLFASIGSRWSIIASQLPGRTDNDIKNYW-NTKLKKK------MMAMNPSLQR 126

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106830|ref|XP_002314299.1| predicted protein [Populus trichocarpa] gi|222850707|gb|EEE88254.1| predicted protein [Populus trichocarpa]

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/43 (69%), Positives = 35/43 (81%), Gaps = 1/43 (2%)

Query: 1   EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKRK 43
           EDR+IC LFA   SRWS+IAA LPGRTDN+  NY+ NTKLK+K
Sbjct: 75  EDRVICSLFANIGSRWSIIAAQLPGRTDNDIKNYW-NTKLKKK 116

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	67
TAIR|locus:2181146	329	MYB37 "myb domain protein 37"	0.626	0.127	0.674	3.5e-10
TAIR|locus:2057931	298	RAX2 "REGULATOR OF AXILLARY ME	0.626	0.140	0.674	3.5e-09
TAIR|locus:2169970	374	MYB68 "myb domain protein 68"	0.626	0.112	0.604	3.6e-09
TAIR|locus:2174557	333	MYB36 "myb domain protein 36"	0.626	0.126	0.627	9.9e-09
TAIR|locus:2097335	310	MYB84 "myb domain protein 84"	0.626	0.135	0.581	1.1e-08
TAIR|locus:2137589	305	MYB87 "myb domain protein 87"	0.626	0.137	0.581	1.3e-08
TAIR|locus:2152830	520	MYB33 "myb domain protein 33"	0.850	0.109	0.465	3.7e-08
TAIR|locus:2059883	269	MYB7 "myb domain protein 7" [A	0.626	0.156	0.581	4.4e-08
TAIR|locus:2205283	282	MYB20 "myb domain protein 20"	0.716	0.170	0.448	7.6e-08
TAIR|locus:2133677	236	MYB6 "myb domain protein 6" [A	0.626	0.177	0.534	1.1e-07

TAIR|locus:2181146 MYB37 "myb domain protein 37" [Arabidopsis thaliana (taxid:3702)]

 Score = 150 (57.9 bits), Expect = 3.5e-10, P = 3.5e-10
 Identities = 29/43 (67%), Positives = 35/43 (81%)

Query:     1 EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKRK 43
             EDR+I  LFA   SRWS+IAAHLPGRTDN+  NY+ NTKL++K
Sbjct:    75 EDRIIFSLFAAIGSRWSIIAAHLPGRTDNDIKNYW-NTKLRKK 116

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2057931 RAX2 "REGULATOR OF AXILLARY MERISTEMS 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 3.5e-09, P = 3.5e-09
 Identities = 29/43 (67%), Positives = 33/43 (76%)

Query:     1 EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKRK 43
             ED +I  LFA   SRWSVIAAHL GRTDN+  NY+ NTKLK+K
Sbjct:    75 EDNIIYSLFASIGSRWSVIAAHLQGRTDNDIKNYW-NTKLKKK 116

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0009785 "blue light signaling pathway" evidence=IMP

TAIR|locus:2169970 MYB68 "myb domain protein 68" [Arabidopsis thaliana (taxid:3702)]

 Score = 142 (55.0 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 26/43 (60%), Positives = 33/43 (76%)

Query:     1 EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKRK 43
             ED +IC L+    SRWS+IAA LPGRTDN+  NY+ NT+LK+K
Sbjct:    75 EDNIICNLYVTIGSRWSIIAAQLPGRTDNDIKNYW-NTRLKKK 116

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2174557 MYB36 "myb domain protein 36" [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 9.9e-09, P = 9.9e-09
 Identities = 27/43 (62%), Positives = 33/43 (76%)

Query:     1 EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKRK 43
             EDR+I  L+    SRWS+IAA LPGRTDN+  NY+ NTKLK+K
Sbjct:    75 EDRIILSLYISIGSRWSIIAAQLPGRTDNDIKNYW-NTKLKKK 116

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2097335 MYB84 "myb domain protein 84" [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 1.1e-08, P = 1.1e-08
 Identities = 25/43 (58%), Positives = 33/43 (76%)

Query:     1 EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKRK 43
             E+ +IC L+    SRWS+IAA LPGRTDN+  NY+ NT+LK+K
Sbjct:    75 EENIICSLYLTIGSRWSIIAAQLPGRTDNDIKNYW-NTRLKKK 116

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2137589 MYB87 "myb domain protein 87" [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 1.3e-08, P = 1.3e-08
 Identities = 25/43 (58%), Positives = 33/43 (76%)

Query:     1 EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKRK 43
             ED +IC L+    SRWS+IA+ LPGRTDN+  NY+ NT+LK+K
Sbjct:    75 EDYIICSLYITIGSRWSIIASQLPGRTDNDIKNYW-NTRLKKK 116

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2152830 MYB33 "myb domain protein 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 3.7e-08, P = 3.7e-08
 Identities = 27/58 (46%), Positives = 40/58 (68%)

Query:     1 EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKRKHEEGGLMVPMKKNLE 58
             E++LI  L A   +RW+ +AAHLPGRTDNE  NY+ NT++KR+   G  + P + ++E
Sbjct:    94 EEQLIVELHAKMGNRWARMAAHLPGRTDNEIKNYW-NTRIKRRQRAGLPLYPPEMHVE 150

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA;TAS

GO:0048235 "pollen sperm cell differentiation" evidence=IGI

GO:0009789 "positive regulation of abscisic acid mediated signaling pathway" evidence=IMP

GO:0043068 "positive regulation of programmed cell death" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP

GO:0045926 "negative regulation of growth" evidence=IMP

GO:0009686 "gibberellin biosynthetic process" evidence=RCA

TAIR|locus:2059883 MYB7 "myb domain protein 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 129 (50.5 bits), Expect = 4.4e-08, P = 4.4e-08
 Identities = 25/43 (58%), Positives = 33/43 (76%)

Query:     1 EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKRK 43
             ED LI +L ++  ++WS+IAA LPGRTDNE  NY+ NT +KRK
Sbjct:    74 EDELIIKLHSLLGNKWSLIAARLPGRTDNEIKNYW-NTHIKRK 115

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009651 "response to salt stress" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2205283 MYB20 "myb domain protein 20" [Arabidopsis thaliana (taxid:3702)]

 Score = 115 (45.5 bits), Expect = 7.6e-08, Sum P(2) = 7.6e-08
 Identities = 22/49 (44%), Positives = 35/49 (71%)

Query:     1 EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKRKHEEGGL 49
             E++++  L +   +RWS IA+HLPGRTDNE  N++ NT +K+K  + G+
Sbjct:    74 EEKMVIDLHSQLGNRWSKIASHLPGRTDNEIKNHW-NTHIKKKLRKMGI 121

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:2000652 "regulation of secondary cell wall biogenesis" evidence=IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2133677 MYB6 "myb domain protein 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 124 (48.7 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 23/43 (53%), Positives = 33/43 (76%)

Query:     1 EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKRK 43
             ED++I +L ++  ++WS+IA  LPGRTDNE  NY+ NT +KRK
Sbjct:    74 EDQIIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYW-NTHIKRK 115

GO:0003677 "DNA binding" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: MYB099 hypothetical protein (118 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	67
PLN03091	459	PLN03091, PLN03091, hypothetical protein; Provisio	2e-09
PLN03212	249	PLN03212, PLN03212, Transcription repressor MYB5;	2e-08
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	6e-04
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	7e-04
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	0.004

>gnl|CDD|215570 PLN03091, PLN03091, hypothetical protein; Provisional

 Score = 50.7 bits (121), Expect = 2e-09
 Identities = 25/49 (51%), Positives = 33/49 (67%), Gaps = 1/49 (2%)

Query: 1   EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKRKHEEGGL 49
           E+ LI  L A+  +RWS IAA LPGRTDNE  N + N+ LK+K  + G+
Sbjct: 74  EENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLW-NSCLKKKLRQRGI 121

Length = 459

>gnl|CDD|178751 PLN03212, PLN03212, Transcription repressor MYB5; Provisional

 Score = 47.8 bits (113), Expect = 2e-08
 Identities = 23/43 (53%), Positives = 31/43 (72%), Gaps = 1/43 (2%)

Query: 1   EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKRK 43
           E+ LI RL  +  +RWS+IA  +PGRTDNE  NY+ NT L++K
Sbjct: 85  EEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYW-NTHLRKK 126

Length = 249

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 33.3 bits (77), Expect = 6e-04
 Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 1  EDRLICRLFAIS-ESRWSVIAAHLPGRTDNETNNYYKNTK 39
          ED L+        ++ W  IA  LPGRT  +    ++N  
Sbjct: 6  EDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 33.3 bits (77), Expect = 7e-04
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 1  EDRLICRLFAISESR-WSVIAAHLPGRTDNETNNYYKNTK 39
          ED L+        +  WS IA HLPGRTDN+  N + N  
Sbjct: 8  EDELLIEAVKKHGNGNWSKIAKHLPGRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 31.4 bits (72), Expect = 0.004
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 1  EDRLICRLFAIS-ESRWSVIAAHLPGRTDNETNNYYKNTK 39
          ED L+  L     ++ W  IA  LPGRT  +    ++N  
Sbjct: 8  EDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLL 47

Length = 49

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	67
KOG0048	238	consensus Transcription factor, Myb superfamily [T	99.77
PLN03212	249	Transcription repressor MYB5; Provisional	99.68
PLN03091	459	hypothetical protein; Provisional	99.61
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.52
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.37
PLN03212	249	Transcription repressor MYB5; Provisional	99.34
KOG0048	238	consensus Transcription factor, Myb superfamily [T	99.28
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.26
PLN03091	459	hypothetical protein; Provisional	99.2
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	99.18
KOG0049	939	consensus Transcription factor, Myb superfamily [T	98.29
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	98.24
COG5147	512	REB1 Myb superfamily proteins, including transcrip	98.19
COG5147	512	REB1 Myb superfamily proteins, including transcrip	97.8
KOG0051	607	consensus RNA polymerase I termination factor, Myb	97.4
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	96.46
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	96.27
KOG0049	939	consensus Transcription factor, Myb superfamily [T	96.23
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	95.36
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	95.03
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	94.25
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	94.2
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	93.29
PF08281	54	Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013	92.81
KOG1279	506	consensus Chromatin remodeling factor subunit and	92.42
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	92.19
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	89.23
PRK13923	170	putative spore coat protein regulator protein YlbO	89.05
cd08319	83	Death_RAIDD Death domain of RIP-associated ICH-1 h	84.79
TIGR02985	161	Sig70_bacteroi1 RNA polymerase sigma-70 factor, Ba	83.9
smart00595	89	MADF subfamily of SANT domain.	81.34

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.77  E-value=4.1e-19  Score=117.29  Aligned_cols=52  Identities=50%  Similarity=0.786  Sum_probs=47.8

Q ss_pred             ChHHHHHHHHhcCCcHHHHHhhCCCCChhhHHHHHHHhhhhhhhhhCCCCCCCC
Q 039547            1 EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKRKHEEGGLMVPMK   54 (67)
Q Consensus         1 Ed~ll~~~~~~~G~kW~~Ia~~lpgRt~~~vknrw~~~~l~~~~~~~~~~~~~~   54 (67)
                      ||++|+++|..+||+|+.||++|||||||+|||+| ++.+++++.... ..+..
T Consensus        69 Ee~~Ii~lH~~~GNrWs~IA~~LPGRTDNeIKN~W-nt~lkkkl~~~~-~~~~~  120 (238)
T KOG0048|consen   69 EEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNHW-NTHLKKKLLKMG-IDPST  120 (238)
T ss_pred             HHHHHHHHHHHHCcHHHHHHhhCCCcCHHHHHHHH-HHHHHHHHHHcC-CCCCc
Confidence            79999999999999999999999999999999999 999999998876 44443

>PLN03212 Transcription repressor MYB5; Provisional

Probab=99.68  E-value=6.3e-17  Score=107.87  Aligned_cols=54  Identities=46%  Similarity=0.817  Sum_probs=48.9

Q ss_pred             ChHHHHHHHHhcCCcHHHHHhhCCCCChhhHHHHHHHhhhhhhhhhCCCCCCCCCC
Q 039547            1 EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKRKHEEGGLMVPMKKN   56 (67)
Q Consensus         1 Ed~ll~~~~~~~G~kW~~Ia~~lpgRt~~~vknrw~~~~l~~~~~~~~~~~~~~~~   56 (67)
                      ||++|+++|.++|++|+.||++|||||+++||||| ++.+++++...+ ++|.+..
T Consensus        85 ED~lLlel~~~~GnKWs~IAk~LpGRTDnqIKNRW-ns~LrK~l~r~~-i~p~~~k  138 (249)
T PLN03212         85 EEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYW-NTHLRKKLLRQG-IDPQTHK  138 (249)
T ss_pred             HHHHHHHHHHhccccHHHHHhhcCCCCHHHHHHHH-HHHHhHHHHhcC-CCCCCCC
Confidence            79999999999999999999999999999999999 999999988877 6655433

>PLN03091 hypothetical protein; Provisional

Probab=99.61  E-value=1e-15  Score=108.57  Aligned_cols=52  Identities=50%  Similarity=0.788  Sum_probs=47.3

Q ss_pred             ChHHHHHHHHhcCCcHHHHHhhCCCCChhhHHHHHHHhhhhhhhhhCCCCCCCC
Q 039547            1 EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKRKHEEGGLMVPMK   54 (67)
Q Consensus         1 Ed~ll~~~~~~~G~kW~~Ia~~lpgRt~~~vknrw~~~~l~~~~~~~~~~~~~~   54 (67)
                      ||++|+++|.++|++|+.||++|||||+++||||| +..++++++..+ +++..
T Consensus        74 ED~lLLeL~k~~GnKWskIAk~LPGRTDnqIKNRW-nslLKKklr~~~-I~p~t  125 (459)
T PLN03091         74 EENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLW-NSCLKKKLRQRG-IDPNT  125 (459)
T ss_pred             HHHHHHHHHHHhCcchHHHHHhcCCCCHHHHHHHH-HHHHHHHHHHcC-CCCCC
Confidence            79999999999999999999999999999999999 999999988776 55443

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.52  E-value=2.8e-14  Score=76.35  Aligned_cols=56  Identities=30%  Similarity=0.436  Sum_probs=44.3

Q ss_pred             ChHHHHHHHHhcCCcHHHHHhhCCCCChhhHHHHHHHhhhhhhhhhCCCCCCCCCCHHHHHHH
Q 039547            1 EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKRKHEEGGLMVPMKKNLERDLRI   63 (67)
Q Consensus         1 Ed~ll~~~~~~~G~kW~~Ia~~lpgRt~~~vknrw~~~~l~~~~~~~~~~~~~~~~~~~~~~~   63 (67)
                      ||++|+++|..+|+.|..||..|+.||+.+|++|| ...+++.      ....+++.++|..|
T Consensus         5 Ed~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~-~~~l~~~------~~~~~wt~eEd~~L   60 (60)
T PF13921_consen    5 EDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRW-RNHLRPK------ISRGPWTKEEDQRL   60 (60)
T ss_dssp             HHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHH-HHTTSTT------STSSSSSHHHHHHH
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHH-HHHCccc------ccCCCcCHHHHhcC
Confidence            79999999999999999999999669999999999 7767655      33444777776543

...

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.37  E-value=6.2e-13  Score=68.71  Aligned_cols=38  Identities=26%  Similarity=0.468  Sum_probs=35.8

Q ss_pred             ChHHHHHHHHhcCCc-HHHHHhhCC-CCChhhHHHHHHHhh
Q 039547            1 EDRLICRLFAISESR-WSVIAAHLP-GRTDNETNNYYKNTK   39 (67)
Q Consensus         1 Ed~ll~~~~~~~G~k-W~~Ia~~lp-gRt~~~vknrw~~~~   39 (67)
                      ||++|++++.++|.. |..||..|| |||+.+|++|| +.+
T Consensus         8 E~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~-~~~   47 (48)
T PF00249_consen    8 EDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRY-QNL   47 (48)
T ss_dssp             HHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHH-HHH
T ss_pred             HHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHH-Hhh
Confidence            789999999999988 999999999 99999999999 654

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PLN03212 Transcription repressor MYB5; Provisional

Probab=99.34  E-value=1.3e-12  Score=87.31  Aligned_cols=59  Identities=15%  Similarity=0.274  Sum_probs=51.2

Q ss_pred             ChHHHHHHHHhcC-CcHHHHHhhC-CCCChhhHHHHHHHhhhhhhhhhCCCCCCCCCCHHHHHHHHhc
Q 039547            1 EDRLICRLFAISE-SRWSVIAAHL-PGRTDNETNNYYKNTKLKRKHEEGGLMVPMKKNLERDLRIVKN   66 (67)
Q Consensus         1 Ed~ll~~~~~~~G-~kW~~Ia~~l-pgRt~~~vknrw~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   66 (67)
                      ||++|+++++++| ++|..||+.+ +|||++||+.|| ..+|++.+.+..      ++.++|..++..
T Consensus        32 EDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW-~N~L~P~I~kgp------WT~EED~lLlel   92 (249)
T PLN03212         32 EDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRW-MNYLRPSVKRGG------ITSDEEDLILRL   92 (249)
T ss_pred             HHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHH-HHhhchhcccCC------CChHHHHHHHHH
Confidence            8999999999999 5899999998 699999999999 999999977766      667777666554

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.28  E-value=2.5e-12  Score=85.07  Aligned_cols=60  Identities=17%  Similarity=0.104  Sum_probs=54.2

Q ss_pred             ChHHHHHHHHhcCC-cHHHHHhhCC-CCChhhHHHHHHHhhhhhhhhhCCCCCCCCCCHHHHHHHHhcC
Q 039547            1 EDRLICRLFAISES-RWSVIAAHLP-GRTDNETNNYYKNTKLKRKHEEGGLMVPMKKNLERDLRIVKNH   67 (67)
Q Consensus         1 Ed~ll~~~~~~~G~-kW~~Ia~~lp-gRt~~~vknrw~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   67 (67)
                      ||++|++++..+|. .|..||+.++ ||++.+|+-|| .+||++.+++..      .+.+++..++.+|
T Consensus        16 ED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW-~NyLrP~ikrg~------fT~eEe~~Ii~lH   77 (238)
T KOG0048|consen   16 EDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRW-TNYLRPDLKRGN------FSDEEEDLIIKLH   77 (238)
T ss_pred             HHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHh-hcccCCCccCCC------CCHHHHHHHHHHH
Confidence            89999999999996 5999999999 99999999999 999999988888      6777777777665

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.26  E-value=8.3e-12  Score=62.69  Aligned_cols=39  Identities=36%  Similarity=0.606  Sum_probs=36.3

Q ss_pred             ChHHHHHHHHhcC-CcHHHHHhhCCCCChhhHHHHHHHhhh
Q 039547            1 EDRLICRLFAISE-SRWSVIAAHLPGRTDNETNNYYKNTKL   40 (67)
Q Consensus         1 Ed~ll~~~~~~~G-~kW~~Ia~~lpgRt~~~vknrw~~~~l   40 (67)
                      ||.+|+.++..+| ..|..||..||+||+.+|+++| +..+
T Consensus         8 E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~-~~~~   47 (49)
T smart00717        8 EDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERW-NNLL   47 (49)
T ss_pred             HHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHH-HHHc
Confidence            7899999999999 9999999999999999999999 6544

>PLN03091 hypothetical protein; Provisional

Probab=99.20  E-value=1.8e-11  Score=87.15  Aligned_cols=60  Identities=17%  Similarity=0.216  Sum_probs=52.3

Q ss_pred             ChHHHHHHHHhcCC-cHHHHHhhC-CCCChhhHHHHHHHhhhhhhhhhCCCCCCCCCCHHHHHHHHhcC
Q 039547            1 EDRLICRLFAISES-RWSVIAAHL-PGRTDNETNNYYKNTKLKRKHEEGGLMVPMKKNLERDLRIVKNH   67 (67)
Q Consensus         1 Ed~ll~~~~~~~G~-kW~~Ia~~l-pgRt~~~vknrw~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   67 (67)
                      ||++|++++.+||. .|..||+.+ +|||+++|+.|| ..+|.+.+.+..      ++.++|..++..|
T Consensus        21 EDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW-~NyLdP~IkKgp------WT~EED~lLLeL~   82 (459)
T PLN03091         21 EDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRW-INYLRPDLKRGT------FSQQEENLIIELH   82 (459)
T ss_pred             HHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHH-HhccCCcccCCC------CCHHHHHHHHHHH
Confidence            89999999999995 799999988 599999999999 999999876665      8888887777643

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=99.18  E-value=4e-11  Score=59.39  Aligned_cols=37  Identities=30%  Similarity=0.536  Sum_probs=35.0

Q ss_pred             ChHHHHHHHHhcC-CcHHHHHhhCCCCChhhHHHHHHHh
Q 039547            1 EDRLICRLFAISE-SRWSVIAAHLPGRTDNETNNYYKNT   38 (67)
Q Consensus         1 Ed~ll~~~~~~~G-~kW~~Ia~~lpgRt~~~vknrw~~~   38 (67)
                      ||.+|+.++..+| ..|..||..||+||+.+|+++| +.
T Consensus         6 E~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~-~~   43 (45)
T cd00167           6 EDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERW-RN   43 (45)
T ss_pred             HHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHH-HH
Confidence            7899999999999 8999999999999999999999 54

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=98.29  E-value=1.1e-06  Score=65.89  Aligned_cols=58  Identities=21%  Similarity=0.379  Sum_probs=48.0

Q ss_pred             ChHHHHHHHHhcCCc-HHHHHhhCCCCChhhHHHHHHHhhhhhhhhhCCCCCCCCCCHHHHHHHHh
Q 039547            1 EDRLICRLFAISESR-WSVIAAHLPGRTDNETNNYYKNTKLKRKHEEGGLMVPMKKNLERDLRIVK   65 (67)
Q Consensus         1 Ed~ll~~~~~~~G~k-W~~Ia~~lpgRt~~~vknrw~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   65 (67)
                      ||.+|+..+.+||.+ |..|-..+|||++.||+.|| ...|....+...      |+..+|-+++.
T Consensus       367 ED~~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~RY-~nvL~~s~K~~r------W~l~edeqL~~  425 (939)
T KOG0049|consen  367 EDVLLVCAVSRYGAKDWAKVRQAVPNRSDSQCRERY-TNVLNRSAKVER------WTLVEDEQLLY  425 (939)
T ss_pred             HHHHHHHHHHHhCccchhhHHHhcCCccHHHHHHHH-HHHHHHhhccCc------eeecchHHHHH
Confidence            799999999999975 99999999999999999999 777777766655      66665555543

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=98.24  E-value=1.5e-06  Score=63.50  Aligned_cols=58  Identities=21%  Similarity=0.271  Sum_probs=50.7

Q ss_pred             ChHHHHHHHHhcC-CcHHHHHhhCCCCChhhHHHHHHHhhhhhhhhhCCCCCCCCCCHHHHHHHHh
Q 039547            1 EDRLICRLFAISE-SRWSVIAAHLPGRTDNETNNYYKNTKLKRKHEEGGLMVPMKKNLERDLRIVK   65 (67)
Q Consensus         1 Ed~ll~~~~~~~G-~kW~~Ia~~lpgRt~~~vknrw~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   65 (67)
                      ||++|-..+..|| |+|+.|++.++-.|..+|++|| +.++.+.+....      ++-+.|.+++.
T Consensus        14 Edeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw-~e~ldp~i~~te------ws~eederlLh   72 (617)
T KOG0050|consen   14 EDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARW-EEWLDPAIKKTE------WSREEDERLLH   72 (617)
T ss_pred             HHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHH-HHHhCHHHhhhh------hhhhHHHHHHH
Confidence            7899999999999 6899999999999999999999 999999988777      66666666654

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=98.19  E-value=1.7e-06  Score=63.01  Aligned_cols=58  Identities=22%  Similarity=0.330  Sum_probs=49.7

Q ss_pred             ChHHHHHHHHhcC-CcHHHHHhhCCCCChhhHHHHHHHhhhhhhhhhCCCCCCCCCCHHHHHHHHh
Q 039547            1 EDRLICRLFAISE-SRWSVIAAHLPGRTDNETNNYYKNTKLKRKHEEGGLMVPMKKNLERDLRIVK   65 (67)
Q Consensus         1 Ed~ll~~~~~~~G-~kW~~Ia~~lpgRt~~~vknrw~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   65 (67)
                      ||..+..++..+| +.|+.||..|.-+++++|++|| +.++.+.+....      ++.++|-.++.
T Consensus        27 EDe~l~~~vk~l~~nnws~vas~~~~~~~kq~~~rw-~~~lnp~lk~~~------~~~eed~~li~   85 (512)
T COG5147          27 EDEDLKALVKKLGPNNWSKVASLLISSTGKQSSNRW-NNHLNPQLKKKN------WSEEEDEQLID   85 (512)
T ss_pred             chhHHHHHHhhcccccHHHHHHHhcccccccccchh-hhhhchhccccc------ccHHHHHHHHH
Confidence            8999999999999 5799999999889999999999 999999977766      56666555543

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=97.80  E-value=1.9e-05  Score=57.68  Aligned_cols=44  Identities=25%  Similarity=0.276  Sum_probs=39.3

Q ss_pred             ChHHHHHHHHhcCCcHHHHHhhCCCCChhhHHHHHHHhhhhhhhh
Q 039547            1 EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKRKHE   45 (67)
Q Consensus         1 Ed~ll~~~~~~~G~kW~~Ia~~lpgRt~~~vknrw~~~~l~~~~~   45 (67)
                      ||..|+.++.++|++|+.||..+||||+.+|.++| ...+.....
T Consensus        79 ed~~li~l~~~~~~~wstia~~~d~rt~~~~~ery-~~~~~~~~s  122 (512)
T COG5147          79 EDEQLIDLDKELGTQWSTIADYKDRRTAQQCVERY-VNTLEDLSS  122 (512)
T ss_pred             HHHHHHHHHHhcCchhhhhccccCccchHHHHHHH-HHHhhhhhc
Confidence            68999999999999999999999999999999999 866655433

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=97.40  E-value=0.00036  Score=51.94  Aligned_cols=59  Identities=17%  Similarity=0.260  Sum_probs=43.5

Q ss_pred             ChHHHHHHHHhcCCcHHHHHhhCCCCChhhHHHHHHHhhhhhhhhhCCCCCCCCCCHHHHHHHHh
Q 039547            1 EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKRKHEEGGLMVPMKKNLERDLRIVK   65 (67)
Q Consensus         1 Ed~ll~~~~~~~G~kW~~Ia~~lpgRt~~~vknrw~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   65 (67)
                      |++.|..++.++|+.|..|++.| ||.+.+|+.+| ..+.+..-    ..+...|+.++.-.++.
T Consensus       391 e~eeL~~l~~~~g~~W~~Ig~~l-gr~P~~crd~w-r~~~~~g~----~~~r~~Ws~eEe~~Llk  449 (607)
T KOG0051|consen  391 EEEELKKLVVEHGNDWKEIGKAL-GRMPMDCRDRW-RQYVKCGS----KRNRGAWSIEEEEKLLK  449 (607)
T ss_pred             hHHHHHHHHHHhcccHHHHHHHH-ccCcHHHHHHH-HHhhcccc----ccccCcchHHHHHHHHH
Confidence            57889999999999999999999 99999999999 43332221    02445566666555543

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=96.46  E-value=0.0027  Score=46.98  Aligned_cols=41  Identities=29%  Similarity=0.477  Sum_probs=36.7

Q ss_pred             ChHHHHHHHHhcCCcHHHHHhhCCCCChhhHHHHHHHhhhhhh
Q 039547            1 EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKRK   43 (67)
Q Consensus         1 Ed~ll~~~~~~~G~kW~~Ia~~lpgRt~~~vknrw~~~~l~~~   43 (67)
                      ||..|+.+...+.+.|..||..| |||+++|-.|| +..+--.
T Consensus        66 ederlLhlakl~p~qwrtIa~i~-gr~~~qc~eRy-~~ll~~~  106 (617)
T KOG0050|consen   66 EDERLLHLAKLEPTQWRTIADIM-GRTSQQCLERY-NNLLDVY  106 (617)
T ss_pred             HHHHHHHHHHhcCCccchHHHHh-hhhHHHHHHHH-HHHHHHH
Confidence            78999999999999999999998 99999999999 7665443

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=96.27  E-value=0.0065  Score=43.86  Aligned_cols=35  Identities=26%  Similarity=0.422  Sum_probs=32.7

Q ss_pred             ChHHHHHHHHhcC-CcHHHHHhhCCCCChhhHHHHH
Q 039547            1 EDRLICRLFAISE-SRWSVIAAHLPGRTDNETNNYY   35 (67)
Q Consensus         1 Ed~ll~~~~~~~G-~kW~~Ia~~lpgRt~~~vknrw   35 (67)
                      |+-+|++....|| .+|..||.++..+|.-.|+.+|
T Consensus        79 EEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy  114 (438)
T KOG0457|consen   79 EEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHY  114 (438)
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHH
Confidence            5678999999999 7999999999999999999999

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=96.23  E-value=0.0054  Score=46.72  Aligned_cols=59  Identities=22%  Similarity=0.386  Sum_probs=50.4

Q ss_pred             ChHHHHHHHHhcCC----cHHHHHhhCCCCChhhHHHHHHHhhhhhhhhhCCCCCCCCCCHHHHHHHHhc
Q 039547            1 EDRLICRLFAISES----RWSVIAAHLPGRTDNETNNYYKNTKLKRKHEEGGLMVPMKKNLERDLRIVKN   66 (67)
Q Consensus         1 Ed~ll~~~~~~~G~----kW~~Ia~~lpgRt~~~vknrw~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   66 (67)
                      ||..|+.++....-    .|..|-.+||||+..++=-|| ...|-+.++...      +.+++|+.++.|
T Consensus       312 ed~kL~alV~~~~~nShI~w~kVV~Ympgr~~~qLI~R~-~~~LdPsikhg~------wt~~ED~~L~~A  374 (939)
T KOG0049|consen  312 EDTKLIALVKITSINSHIQWDKVVQYMPGRTRQQLITRF-SHTLDPSVKHGR------WTDQEDVLLVCA  374 (939)
T ss_pred             hhHHHHHHHHHhhccCccchHHHHHhcCCcchhhhhhhh-eeccCccccCCC------CCCHHHHHHHHH
Confidence            68899999988762    599999999999999999999 877888766666      788888888765

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=95.36  E-value=0.012  Score=32.76  Aligned_cols=31  Identities=32%  Similarity=0.467  Sum_probs=20.9

Q ss_pred             cHHHHHhhC----CCCChhhHHHHHHHhhhhhhhhhC
Q 039547           15 RWSVIAAHL----PGRTDNETNNYYKNTKLKRKHEEG   47 (67)
Q Consensus        15 kW~~Ia~~l----pgRt~~~vknrw~~~~l~~~~~~~   47 (67)
                      -|..||..|    ..||+.+|+++| ++ |++.....
T Consensus        36 ~w~~Ia~~l~~~G~~rt~~qc~~Kw-~~-L~~~Yk~~   70 (90)
T PF13837_consen   36 VWKEIAEELAEHGYNRTPEQCRNKW-KN-LKKKYKKI   70 (90)
T ss_dssp             HHHHHHHHHHHHC----HHHHHHHH-HH-HHHHHHCS
T ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHH-HH-HHHHHHHH
Confidence            399999988    479999999999 55 55555443

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=95.03  E-value=0.066  Score=37.99  Aligned_cols=40  Identities=20%  Similarity=0.282  Sum_probs=34.8

Q ss_pred             ChHHHHHHHHhcC-CcHHHHHhhCCCCChhhHHHHHHHhhh
Q 039547            1 EDRLICRLFAISE-SRWSVIAAHLPGRTDNETNNYYKNTKL   40 (67)
Q Consensus         1 Ed~ll~~~~~~~G-~kW~~Ia~~lpgRt~~~vknrw~~~~l   40 (67)
                      |+-+|++.-..+| ..|..||.++..|+...||.+|...++
T Consensus        70 EEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~  110 (432)
T COG5114          70 EELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD  110 (432)
T ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence            6778899999999 799999999999999999999944444

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=94.25  E-value=0.11  Score=27.66  Aligned_cols=35  Identities=9%  Similarity=0.076  Sum_probs=29.1

Q ss_pred             ChHHHHHHHHhcCC-cH---HHHHhhCC-CC-ChhhHHHHH
Q 039547            1 EDRLICRLFAISES-RW---SVIAAHLP-GR-TDNETNNYY   35 (67)
Q Consensus         1 Ed~ll~~~~~~~G~-kW---~~Ia~~lp-gR-t~~~vknrw   35 (67)
                      |....++.+..+|. .|   ..|+..|. .+ |..+|+.+.
T Consensus        10 eh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~   50 (57)
T TIGR01557        10 LHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHL   50 (57)
T ss_pred             HHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHH
Confidence            34677889999996 99   99999884 34 999999988

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=94.20  E-value=0.09  Score=28.74  Aligned_cols=41  Identities=15%  Similarity=0.286  Sum_probs=28.2

Q ss_pred             ChHHHHHHHHhc--------CCc-HHHHHhhCC-CCChhhHHHHHHHhhhhh
Q 039547            1 EDRLICRLFAIS--------ESR-WSVIAAHLP-GRTDNETNNYYKNTKLKR   42 (67)
Q Consensus         1 Ed~ll~~~~~~~--------G~k-W~~Ia~~lp-gRt~~~vknrw~~~~l~~   42 (67)
                      ||.+|+..+.++        ||+ |..++..-| .+|-.+.++|| .-.++.
T Consensus         9 dD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry-~K~L~~   59 (65)
T PF08914_consen    9 DDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRY-LKHLRG   59 (65)
T ss_dssp             HHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHH-HHHT--
T ss_pred             HHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHH-HHHHhc
Confidence            688899888543        333 999999888 99999999999 544443

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=93.29  E-value=0.13  Score=32.89  Aligned_cols=29  Identities=21%  Similarity=0.349  Sum_probs=24.0

Q ss_pred             HHHHHhhCCCCChhhHHHHHHHhhhhhhhhh
Q 039547           16 WSVIAAHLPGRTDNETNNYYKNTKLKRKHEE   46 (67)
Q Consensus        16 W~~Ia~~lpgRt~~~vknrw~~~~l~~~~~~   46 (67)
                      ...++..| +||+-+|.=|| |+++++++..
T Consensus        33 FeEvg~~L-~RTsAACGFRW-Ns~VRkqY~~   61 (161)
T TIGR02894        33 FEEVGRAL-NRTAAACGFRW-NAYVRKQYEE   61 (161)
T ss_pred             HHHHHHHH-cccHHHhcchH-HHHHHHHHHH
Confidence            45677887 99999999999 9999976543

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription

Probab=92.81  E-value=0.3  Score=24.68  Aligned_cols=33  Identities=21%  Similarity=0.216  Sum_probs=25.5

Q ss_pred             hHHHHHHHHhcCCcHHHHHhhCCCCChhhHHHHH
Q 039547            2 DRLICRLFAISESRWSVIAAHLPGRTDNETNNYY   35 (67)
Q Consensus         2 d~ll~~~~~~~G~kW~~Ia~~lpgRt~~~vknrw   35 (67)
                      +..++.++-..|-.|..||..+ |.|.+.|+++.
T Consensus        15 ~r~i~~l~~~~g~s~~eIa~~l-~~s~~~v~~~l   47 (54)
T PF08281_consen   15 QREIFLLRYFQGMSYAEIAEIL-GISESTVKRRL   47 (54)
T ss_dssp             HHHHHHHHHTS---HHHHHHHC-TS-HHHHHHHH
T ss_pred             HHHHHHHHHHHCcCHHHHHHHH-CcCHHHHHHHH
Confidence            4567888888999999999999 89999999987

Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=92.42  E-value=0.2  Score=37.08  Aligned_cols=35  Identities=14%  Similarity=0.335  Sum_probs=33.0

Q ss_pred             ChHHHHHHHHhcCCcHHHHHhhCCCCChhhHHHHH
Q 039547            1 EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYY   35 (67)
Q Consensus         1 Ed~ll~~~~~~~G~kW~~Ia~~lpgRt~~~vknrw   35 (67)
                      |..+|++.+..||-.|..||.+...||-.+|=-+|
T Consensus       260 E~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kF  294 (506)
T KOG1279|consen  260 ETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKF  294 (506)
T ss_pred             HHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHH
Confidence            56789999999999999999999999999999988

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=92.19  E-value=0.18  Score=37.20  Aligned_cols=35  Identities=17%  Similarity=0.264  Sum_probs=32.6

Q ss_pred             ChHHHHHHHHhcCCcHHHHHhhCCCCChhhHHHHH
Q 039547            1 EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYY   35 (67)
Q Consensus         1 Ed~ll~~~~~~~G~kW~~Ia~~lpgRt~~~vknrw   35 (67)
                      |..+|++.+.+||-.|..||+++..+|.-+|=-+|
T Consensus       286 E~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~F  320 (531)
T COG5259         286 ELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHF  320 (531)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHH
Confidence            45689999999999999999999999999999998

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=89.23  E-value=0.69  Score=25.15  Aligned_cols=20  Identities=25%  Similarity=0.441  Sum_probs=17.9

Q ss_pred             HHHHHhhC-----CCCChhhHHHHH
Q 039547           16 WSVIAAHL-----PGRTDNETNNYY   35 (67)
Q Consensus        16 W~~Ia~~l-----pgRt~~~vknrw   35 (67)
                      |..|+..|     +.||..+++..|
T Consensus        41 W~~I~~~lN~~~~~~Rs~~~lkkkW   65 (78)
T PF13873_consen   41 WEEIAEELNALGPGKRSWKQLKKKW   65 (78)
T ss_pred             HHHHHHHHHhcCCCCCCHHHHHHHH
Confidence            99999877     369999999999

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=89.05  E-value=0.6  Score=30.10  Aligned_cols=36  Identities=14%  Similarity=0.211  Sum_probs=24.6

Q ss_pred             HHHHHhcCCcH---HHHHhhCCCCChhhHHHHHHHhhhhhh
Q 039547            6 CRLFAISESRW---SVIAAHLPGRTDNETNNYYKNTKLKRK   43 (67)
Q Consensus         6 ~~~~~~~G~kW---~~Ia~~lpgRt~~~vknrw~~~~l~~~   43 (67)
                      ++...+-|.+-   ...+..| +||.-+|.-|| |+.++++
T Consensus        21 l~~i~eg~tql~afe~~g~~L-~rt~aac~fRw-Ns~vrk~   59 (170)
T PRK13923         21 LRHIREGGTQLKAFEEVGDAL-KRTAAACGFRW-NSVVRKQ   59 (170)
T ss_pred             HHHHhccchHHHHHHHHHHHH-hhhHHHHHhHH-HHHHHHH
Confidence            34444444443   3455666 89999999999 9988864

>cd08319 Death_RAIDD Death domain of RIP-associated ICH-1 homologous protein with a death domain

Probab=84.79  E-value=1.9  Score=24.50  Aligned_cols=31  Identities=19%  Similarity=0.350  Sum_probs=25.4

Q ss_pred             hHHHHHHHHhcCCcHHHHHhhCCCCChhhHHH
Q 039547            2 DRLICRLFAISESRWSVIAAHLPGRTDNETNN   33 (67)
Q Consensus         2 d~ll~~~~~~~G~kW~~Ia~~lpgRt~~~vkn   33 (67)
                      |+-|..+...+|..|..+|.+| |=|...|..
T Consensus         2 ~~~L~~la~~LG~~W~~Lar~L-gls~~~I~~   32 (83)
T cd08319           2 DRELNQLAQRLGPEWEQVLLDL-GLSQTDIYR   32 (83)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence            4567788999999999999999 777776654

Death domain (DD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal Caspase Activation and Recruitment Domain (CARD), which interacts with the caspase-2 CARD, and a C-terminal DD, which interacts with the DD of PIDD. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD, DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other pr

>TIGR02985 Sig70_bacteroi1 RNA polymerase sigma-70 factor, Bacteroides expansion family 1

Probab=83.90  E-value=3.2  Score=24.41  Aligned_cols=33  Identities=21%  Similarity=0.146  Sum_probs=27.2

Q ss_pred             hHHHHHHHHhcCCcHHHHHhhCCCCChhhHHHHH
Q 039547            2 DRLICRLFAISESRWSVIAAHLPGRTDNETNNYY   35 (67)
Q Consensus         2 d~ll~~~~~~~G~kW~~Ia~~lpgRt~~~vknrw   35 (67)
                      +..++.++-..|-.+..||..+ |.|...|+++.
T Consensus       118 ~r~il~l~~~~~~~~~eIA~~l-gis~~tv~~~~  150 (161)
T TIGR02985       118 CRKIFILSRFEGKSYKEIAEEL-GISVKTVEYHI  150 (161)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHH-CCCHHHHHHHH
Confidence            3456667556788999999998 89999999998

This group of sigma factors are members of the sigma-70 family (TIGR02937) and are found primarily in the genus Bacteroides. This family appears to have resulted from a lineage-specific expansion as B. thetaiotaomicron VPI-5482, Bacteroides forsythus ATCC 43037, Bacteroides fragilis YCH46 and Bacteroides fragilis NCTC 9343 contain 25, 12, 24 and 23 members, respectively. There are currentlyonly two known members of this family outside of the Bacteroides, in Rhodopseudomonas and Bradyrhizobium.

>smart00595 MADF subfamily of SANT domain

Probab=81.34  E-value=2.3  Score=23.38  Aligned_cols=21  Identities=24%  Similarity=0.400  Sum_probs=18.4

Q ss_pred             HHHHHhhCCCCChhhHHHHHHHh
Q 039547           16 WSVIAAHLPGRTDNETNNYYKNT   38 (67)
Q Consensus        16 W~~Ia~~lpgRt~~~vknrw~~~   38 (67)
                      |..||..|.. |...|+.+| ++
T Consensus        30 W~~Ia~~l~~-~~~~~~~kw-~~   50 (89)
T smart00595       30 WEEIAEELGL-SVEECKKRW-KN   50 (89)
T ss_pred             HHHHHHHHCc-CHHHHHHHH-HH
Confidence            9999999954 999999999 54

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	67
1a5j_A	110	Chicken B-Myb Dna Binding Domain, Repeat 2 And Repe		2e-04

>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3, Nmr, 32 Structures Length = 110

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 1   EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKRK 43
           EDR+I     +  +RW+ IA  LPGRTDN   N++ N+ +KRK
Sbjct: 66  EDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHW-NSTIKRK 107

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	67
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	9e-12
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	1e-11
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	1e-11
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	4e-11
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	5e-10
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	2e-09

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Length = 131

 Score = 54.6 bits (132), Expect = 9e-12
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 1   EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKRKHEEGG 48
           ED  I R +    S+WSVIA  +PGRTDN   N + N+ + ++     
Sbjct: 61  EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRW-NSSISKRISTNS 107

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Length = 105

 Score = 53.7 bits (130), Expect = 1e-11
 Identities = 19/43 (44%), Positives = 28/43 (65%), Gaps = 1/43 (2%)

Query: 1   EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKRK 43
           EDR+I +      +RW+ IA  LPGRTDN   N++ N+ ++RK
Sbjct: 63  EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHW-NSTMRRK 104

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Length = 128

 Score = 54.1 bits (131), Expect = 1e-11
 Identities = 19/43 (44%), Positives = 28/43 (65%), Gaps = 1/43 (2%)

Query: 1   EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKRK 43
           EDR+I +      +RW+ IA  LPGRTDN   N++ N+ ++RK
Sbjct: 86  EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHW-NSTMRRK 127

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126

 Score = 53.0 bits (128), Expect = 4e-11
 Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 1   EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKRKHEEGGLMVPMKKN 56
           ED L+ +       +W++IA   PGRTD    N +  T   +        +    +
Sbjct: 69  EDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRW-VTISNKLGIPQTQQMLEHHH 123

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Length = 107

 Score = 49.8 bits (120), Expect = 5e-10
 Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 1   EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKRKHEE 46
           ED L+ + +A    +W+ I+  L  R+DN   N +     + + + 
Sbjct: 60  EDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRW-MMIARHRAKH 104

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score = 49.2 bits (118), Expect = 2e-09
 Identities = 19/43 (44%), Positives = 28/43 (65%), Gaps = 1/43 (2%)

Query: 1   EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKRK 43
           EDR+I +      +RW+ IA  LPGRTDN   N++ N+ ++RK
Sbjct: 117 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHW-NSTMRRK 158

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	67
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.73
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.67
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.65
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.65
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.65
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.63
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.62
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.61
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.61
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.61
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.6
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.59
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	99.37
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.59
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.57
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.57
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.56
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.56
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.55
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.55
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.54
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.53
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.53
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.52
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.5
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.5
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.5
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.48
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.47
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.42
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.38
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.33
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.32
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.29
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	99.27
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	99.07
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.83
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	98.78
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.76
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	98.18
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.17
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	97.43
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.13
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	97.43
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.39
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	97.32
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	97.23
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	97.2
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	97.15
2crg_A	70	Metastasis associated protein MTA3; transcription	96.87
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	95.52
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	85.86
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	81.15

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.73  E-value=2.5e-18  Score=95.04  Aligned_cols=52  Identities=23%  Similarity=0.271  Sum_probs=46.4

Q ss_pred             ChHHHHHHHHhcCCcHHHHHhhCCCCChhhHHHHHHHhhhhhhhhhCCCCCCCCC
Q 039547            1 EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKRKHEEGGLMVPMKK   55 (67)
Q Consensus         1 Ed~ll~~~~~~~G~kW~~Ia~~lpgRt~~~vknrw~~~~l~~~~~~~~~~~~~~~   55 (67)
                      ||++|++++.+||++|..||.+|||||+++|+||| +.++++.+.. + +++...
T Consensus        16 Ed~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~-~~~l~~~~~~-g-~~~~~~   67 (72)
T 2cu7_A           16 EKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYA-RQYFKNKVKC-G-LDKETP   67 (72)
T ss_dssp             HHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHH-HHHHHHHSCS-C-TTCCCS
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHH-HHHHHHHHhc-C-CCCCcc
Confidence            79999999999999999999999999999999999 9999988776 5 555443

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.67  E-value=5e-17  Score=89.23  Aligned_cols=52  Identities=15%  Similarity=0.184  Sum_probs=47.2

Q ss_pred             ChHHHHHHHHhcC-CcHHHHHhhCCCCChhhHHHHHHHhhhhhhhhhCCCCCCCC
Q 039547            1 EDRLICRLFAISE-SRWSVIAAHLPGRTDNETNNYYKNTKLKRKHEEGGLMVPMK   54 (67)
Q Consensus         1 Ed~ll~~~~~~~G-~kW~~Ia~~lpgRt~~~vknrw~~~~l~~~~~~~~~~~~~~   54 (67)
                      ||++|++++..|| ++|..||.+|||||+++|++|| ..+|.+.+.... +++.+
T Consensus        16 ED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw-~~~L~p~i~~~~-wt~eE   68 (70)
T 2dim_A           16 EDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARW-YEWLDPSIKKTE-WSGPS   68 (70)
T ss_dssp             HHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHH-HHTSCSSSCCCC-SCCSC
T ss_pred             HHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHH-HHHcCCcccCCC-CChHh
Confidence            7999999999999 7999999999999999999999 999999888777 55543

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.65  E-value=1.1e-16  Score=86.96  Aligned_cols=46  Identities=22%  Similarity=0.405  Sum_probs=43.5

Q ss_pred             ChHHHHHHHHhcCCcHHHHHhhCCCCChhhHHHHHHHhhhhhhhhhCC
Q 039547            1 EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKRKHEEGG   48 (67)
Q Consensus         1 Ed~ll~~~~~~~G~kW~~Ia~~lpgRt~~~vknrw~~~~l~~~~~~~~   48 (67)
                      ||++|++++..+|++|+.||. |||||+++|++|| +.++++.+....
T Consensus        16 ED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw-~~~l~~~~~~~~   61 (66)
T 2din_A           16 EEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHY-EFLLDKAAQRDS   61 (66)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHH-HHHHHHHHHSSS
T ss_pred             HHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHH-HHHhChHhcCCC
Confidence            799999999999999999999 9999999999999 999999887765

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.65  E-value=1e-16  Score=83.38  Aligned_cols=41  Identities=32%  Similarity=0.525  Sum_probs=38.7

Q ss_pred             ChHHHHHHHHhcCC-cHHHHHhhCCCCChhhHHHHHHHhhhhh
Q 039547            1 EDRLICRLFAISES-RWSVIAAHLPGRTDNETNNYYKNTKLKR   42 (67)
Q Consensus         1 Ed~ll~~~~~~~G~-kW~~Ia~~lpgRt~~~vknrw~~~~l~~   42 (67)
                      ||++|++++.++|+ +|+.||..|||||+++|++|| +.+|.+
T Consensus        10 ED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw-~~~L~P   51 (52)
T 1guu_A           10 EDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRW-QKVLNP   51 (52)
T ss_dssp             HHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHH-HHHHSC
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHH-HHHcCc
Confidence            79999999999998 999999999999999999999 887765

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.65  E-value=6.6e-17  Score=86.37  Aligned_cols=43  Identities=26%  Similarity=0.424  Sum_probs=40.2

Q ss_pred             ChHHHHHHHHhcC-CcHHHHHhhCCCCChhhHHHHHHHhhhhhhh
Q 039547            1 EDRLICRLFAISE-SRWSVIAAHLPGRTDNETNNYYKNTKLKRKH   44 (67)
Q Consensus         1 Ed~ll~~~~~~~G-~kW~~Ia~~lpgRt~~~vknrw~~~~l~~~~   44 (67)
                      ||++|++++.+|| ++|+.||.+|||||+++|++|| +.+|++.+
T Consensus        15 ED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw-~~~l~p~i   58 (60)
T 2d9a_A           15 EDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRW-LRVLSGPS   58 (60)
T ss_dssp             HHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHH-HHTSCSSS
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHH-HHHcCCcc
Confidence            7999999999999 6999999999999999999999 88888764

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.63  E-value=2.1e-16  Score=82.30  Aligned_cols=41  Identities=34%  Similarity=0.601  Sum_probs=38.3

Q ss_pred             ChHHHHHHHHhcCC-cHHHHHhhCCCCChhhHHHHHHHhhhhh
Q 039547            1 EDRLICRLFAISES-RWSVIAAHLPGRTDNETNNYYKNTKLKR   42 (67)
Q Consensus         1 Ed~ll~~~~~~~G~-kW~~Ia~~lpgRt~~~vknrw~~~~l~~   42 (67)
                      ||++|++++.++|+ +|+.||..|||||+++|++|| ..+|.+
T Consensus        10 ED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw-~~~L~P   51 (52)
T 1gvd_A           10 EDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERW-HNHLNP   51 (52)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHH-HHTTSC
T ss_pred             HHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHH-HHHcCc
Confidence            79999999999997 699999999999999999999 887765

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.62  E-value=2.2e-16  Score=91.94  Aligned_cols=42  Identities=45%  Similarity=0.758  Sum_probs=38.7

Q ss_pred             ChHHHHHHHHhcCCcHHHHHhhCCCCChhhHHHHHHHhhhhhh
Q 039547            1 EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKRK   43 (67)
Q Consensus         1 Ed~ll~~~~~~~G~kW~~Ia~~lpgRt~~~vknrw~~~~l~~~   43 (67)
                      ||.+|++++.++|++|+.||++|||||+++|+||| +..++++
T Consensus        63 Ed~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw-~~~~~~~  104 (105)
T 1gv2_A           63 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHW-NSTMRRK  104 (105)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHH-HHHTC--
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHH-HHHHhcc
Confidence            79999999999999999999999999999999999 8888775

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.61  E-value=4.3e-16  Score=94.05  Aligned_cols=47  Identities=38%  Similarity=0.649  Sum_probs=44.4

Q ss_pred             ChHHHHHHHHhcCCcHHHHHhhCCCCChhhHHHHHHHhhhhhhhhhCC
Q 039547            1 EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKRKHEEGG   48 (67)
Q Consensus         1 Ed~ll~~~~~~~G~kW~~Ia~~lpgRt~~~vknrw~~~~l~~~~~~~~   48 (67)
                      ||++|+++|.++|++|+.||++|||||+++|+||| ++++++++...+
T Consensus        61 Ed~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw-~~~l~~~~~~~~  107 (131)
T 3zqc_A           61 EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRW-NSSISKRISTNS  107 (131)
T ss_dssp             HHHHHHHHHHHSCSCHHHHTTTSTTCCHHHHHHHH-HHTTGGGCCCCT
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHH-HHHHHHHhhcCC
Confidence            79999999999999999999999999999999999 999999887665

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.61  E-value=2e-16  Score=88.20  Aligned_cols=36  Identities=22%  Similarity=0.323  Sum_probs=34.6

Q ss_pred             ChHHHHHHHHhcCCcHHHHHhhCCCCChhhHHHHHHHh
Q 039547            1 EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNT   38 (67)
Q Consensus         1 Ed~ll~~~~~~~G~kW~~Ia~~lpgRt~~~vknrw~~~   38 (67)
                      ||++|+++|.++|++|+.||+.| |||+++||||| +.
T Consensus        30 ED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw-~~   65 (73)
T 2llk_A           30 EIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRC-RL   65 (73)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHH-HH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHH-HH
Confidence            79999999999999999999999 99999999999 64

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.61  E-value=6e-16  Score=84.76  Aligned_cols=47  Identities=23%  Similarity=0.205  Sum_probs=43.3

Q ss_pred             ChHHHHHHHHhcC-CcHHHHHhhCC--CCChhhHHHHHHHhhhhhhhhhCC
Q 039547            1 EDRLICRLFAISE-SRWSVIAAHLP--GRTDNETNNYYKNTKLKRKHEEGG   48 (67)
Q Consensus         1 Ed~ll~~~~~~~G-~kW~~Ia~~lp--gRt~~~vknrw~~~~l~~~~~~~~   48 (67)
                      ||++|++++.+|| ++|+.||..||  |||+++|++|| ..++++.+.+..
T Consensus        17 ED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw-~~~l~p~i~k~~   66 (69)
T 1ity_A           17 EDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRW-RTMKKLKLISSD   66 (69)
T ss_dssp             HHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHH-HHHHHTSCCCCC
T ss_pred             HHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHH-HHHcCCCCCCCC
Confidence            7999999999999 69999999999  99999999999 999998876554

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.60  E-value=6e-16  Score=90.68  Aligned_cols=44  Identities=25%  Similarity=0.443  Sum_probs=40.5

Q ss_pred             ChHHHHHHHHhcCCcHHHHHhhCCCCChhhHHHHHHHhhhhhhhh
Q 039547            1 EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKRKHE   45 (67)
Q Consensus         1 Ed~ll~~~~~~~G~kW~~Ia~~lpgRt~~~vknrw~~~~l~~~~~   45 (67)
                      ||.+|+++|.+||++|+.||++|||||+++|+||| +..+++...
T Consensus        60 Ed~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw-~~l~r~~~~  103 (107)
T 2k9n_A           60 EDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRW-MMIARHRAK  103 (107)
T ss_dssp             HHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHH-HHHHHHHHS
T ss_pred             HHHHHHHHHHHhCcCHHHHHHHCCCCCHHHHHHHH-HHHHhhHHH
Confidence            79999999999999999999999999999999999 887776543

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.59  E-value=6.3e-16  Score=92.84  Aligned_cols=42  Identities=45%  Similarity=0.763  Sum_probs=39.4

Q ss_pred             ChHHHHHHHHhcCCcHHHHHhhCCCCChhhHHHHHHHhhhhhh
Q 039547            1 EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKRK   43 (67)
Q Consensus         1 Ed~ll~~~~~~~G~kW~~Ia~~lpgRt~~~vknrw~~~~l~~~   43 (67)
                      ||.+|++++.++|++|+.||++|||||+++|+||| +..++++
T Consensus        86 Ed~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~-~~~~~~~  127 (128)
T 1h8a_C           86 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHW-NSTMRRK  127 (128)
T ss_dssp             HHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHH-HTTTTC-
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHH-HHHHhcc
Confidence            79999999999999999999999999999999999 8888775

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=99.37  E-value=9.5e-17  Score=92.05  Aligned_cols=44  Identities=23%  Similarity=0.265  Sum_probs=40.7

Q ss_pred             ChHHHHHHHHhcCCcHHHHHhhCCCCChhhHHHHHHHhhhhhhhh
Q 039547            1 EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKRKHE   45 (67)
Q Consensus         1 Ed~ll~~~~~~~G~kW~~Ia~~lpgRt~~~vknrw~~~~l~~~~~   45 (67)
                      ||++|+++|.+||++|+.||.+|||||+++|+||| +.++++.-.
T Consensus        23 Ed~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~-~~~lrk~~l   66 (89)
T 2ltp_A           23 EMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFY-FNYKKRQNL   66 (89)
Confidence            89999999999999999999999999999999999 988876533

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.59  E-value=1.3e-15  Score=79.70  Aligned_cols=41  Identities=24%  Similarity=0.240  Sum_probs=37.9

Q ss_pred             ChHHHHHHHHhcC-CcHHHHHhhCC--CCChhhHHHHHHHhhhhh
Q 039547            1 EDRLICRLFAISE-SRWSVIAAHLP--GRTDNETNNYYKNTKLKR   42 (67)
Q Consensus         1 Ed~ll~~~~~~~G-~kW~~Ia~~lp--gRt~~~vknrw~~~~l~~   42 (67)
                      ||++|++++..+| ++|+.||..||  |||+++|++|| ..+++.
T Consensus         9 Ed~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw-~~~~k~   52 (53)
T 1w0t_A            9 EDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRW-RTMKKL   52 (53)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHH-HHHHTC
T ss_pred             HHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHH-HHHHcc
Confidence            7999999999999 69999999999  99999999999 776654

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.57  E-value=2.5e-15  Score=90.25  Aligned_cols=59  Identities=25%  Similarity=0.402  Sum_probs=52.4

Q ss_pred             ChHHHHHHHHhcCCcHHHHHhhCCCCChhhHHHHHHHhhhhhhhhhCCCCCCCCCCHHHHHHHHhc
Q 039547            1 EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKRKHEEGGLMVPMKKNLERDLRIVKN   66 (67)
Q Consensus         1 Ed~ll~~~~~~~G~kW~~Ia~~lpgRt~~~vknrw~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   66 (67)
                      ||++|++++..||.+|..||..|||||+.+|+.|| ..++.+.+..      .+++.++|..++.+
T Consensus        18 ED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw-~~~l~p~~~~------~~WT~eEd~~L~~~   76 (126)
T 3osg_A           18 EDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRW-KNYLAPSISH------TPWTAEEDALLVQK   76 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHH-HHHTSTTSCC------SCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHH-hhhccccccc------ccCCHHHHHHHHHH
Confidence            79999999999999999999999999999999999 8888776544      45899999888765

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.57  E-value=1.3e-15  Score=94.16  Aligned_cols=43  Identities=44%  Similarity=0.725  Sum_probs=39.4

Q ss_pred             ChHHHHHHHHhcCCcHHHHHhhCCCCChhhHHHHHHHhhhhhhh
Q 039547            1 EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKRKH   44 (67)
Q Consensus         1 Ed~ll~~~~~~~G~kW~~Ia~~lpgRt~~~vknrw~~~~l~~~~   44 (67)
                      ||.+|++++.++|++|+.||++|||||+++|+||| +..+++++
T Consensus       117 Ed~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~-~~~~r~~~  159 (159)
T 1h89_C          117 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHW-NSTMRRKV  159 (159)
T ss_dssp             HHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHH-HTTTCC--
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHH-HHHHhccC
Confidence            79999999999999999999999999999999999 88887753

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.56  E-value=1.8e-15  Score=81.01  Aligned_cols=41  Identities=15%  Similarity=0.245  Sum_probs=37.8

Q ss_pred             ChHHHHHHHHhcC-CcHHHHHhhCCCCChhhHHHHHHHhhhhh
Q 039547            1 EDRLICRLFAISE-SRWSVIAAHLPGRTDNETNNYYKNTKLKR   42 (67)
Q Consensus         1 Ed~ll~~~~~~~G-~kW~~Ia~~lpgRt~~~vknrw~~~~l~~   42 (67)
                      ||++|++++..|| ++|..||++|||||+++|++|| ..++.+
T Consensus        15 ED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~-~~~l~~   56 (60)
T 1x41_A           15 EEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHY-MKYFSG   56 (60)
T ss_dssp             HHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHH-HHHTTC
T ss_pred             HHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHH-HHHccC
Confidence            7999999999999 7999999999999999999999 766643

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.56  E-value=2.6e-15  Score=87.33  Aligned_cols=59  Identities=29%  Similarity=0.414  Sum_probs=51.4

Q ss_pred             ChHHHHHHHHhcCC-cHHHHHhhCCCCChhhHHHHHHHhhhhhhhhhCCCCCCCCCCHHHHHHHHhc
Q 039547            1 EDRLICRLFAISES-RWSVIAAHLPGRTDNETNNYYKNTKLKRKHEEGGLMVPMKKNLERDLRIVKN   66 (67)
Q Consensus         1 Ed~ll~~~~~~~G~-kW~~Ia~~lpgRt~~~vknrw~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   66 (67)
                      ||++|++++..||. +|..||..|||||+.+|+.|| ..++.+.+      ...+++.++|..++.+
T Consensus        11 ED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw-~~~l~p~~------~~~~Wt~eEd~~L~~~   70 (105)
T 1gv2_A           11 EDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERW-HNHLNPEV------KKTSWTEEEDRIIYQA   70 (105)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHH-HHTTCCCC------CCCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHH-HhccCCcc------cccCCCHHHHHHHHHH
Confidence            79999999999997 699999999999999999999 88777664      4455888988888765

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.55  E-value=3.5e-15  Score=89.55  Aligned_cols=60  Identities=27%  Similarity=0.376  Sum_probs=51.8

Q ss_pred             ChHHHHHHHHhcCC-cHHHHHhhCCCCChhhHHHHHHHhhhhhhhhhCCCCCCCCCCHHHHHHHHhcC
Q 039547            1 EDRLICRLFAISES-RWSVIAAHLPGRTDNETNNYYKNTKLKRKHEEGGLMVPMKKNLERDLRIVKNH   67 (67)
Q Consensus         1 Ed~ll~~~~~~~G~-kW~~Ia~~lpgRt~~~vknrw~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   67 (67)
                      ||++|++++..||. +|..||..|||||+++|++|| ..++.+.+.      ..+++.++|..++.+|
T Consensus        34 ED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw-~~~l~p~~~------~~~WT~eEd~~L~~~~   94 (128)
T 1h8a_C           34 EDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERW-HNHLNPEVK------KTSWTEEEDRIIYQAH   94 (128)
T ss_dssp             HHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHH-HHTTCSSSC------CSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHH-HHhcccccc------cccCCHHHHHHHHHHH
Confidence            79999999999996 699999999999999999999 888877644      4458888888887653

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.55  E-value=5e-15  Score=86.72  Aligned_cols=59  Identities=15%  Similarity=0.189  Sum_probs=51.8

Q ss_pred             ChHHHHHHHHhcCC-cHHHHHhhCCCCChhhHHHHHHHhhhhhhhhhCCCCCCCCCCHHHHHHHHhc
Q 039547            1 EDRLICRLFAISES-RWSVIAAHLPGRTDNETNNYYKNTKLKRKHEEGGLMVPMKKNLERDLRIVKN   66 (67)
Q Consensus         1 Ed~ll~~~~~~~G~-kW~~Ia~~lpgRt~~~vknrw~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   66 (67)
                      ||++|++++..||. .|..||..|||||+.+|+.|| ..+|.+.+.      ..+++.++|..++.+
T Consensus         8 ED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw-~~~L~p~i~------~~~WT~eEd~~L~~~   67 (107)
T 2k9n_A            8 EDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERW-NNYINPALR------TDPWSPEEDMLLDQK   67 (107)
T ss_dssp             HHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHH-HHHSSSCCT------TCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHH-HHHHccccc------ccccCHHHHHHHHHH
Confidence            79999999999996 899999999999999999999 888887644      445888988888765

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.54  E-value=5.2e-15  Score=91.46  Aligned_cols=60  Identities=30%  Similarity=0.456  Sum_probs=51.9

Q ss_pred             ChHHHHHHHHhcCC-cHHHHHhhCCCCChhhHHHHHHHhhhhhhhhhCCCCCCCCCCHHHHHHHHhcC
Q 039547            1 EDRLICRLFAISES-RWSVIAAHLPGRTDNETNNYYKNTKLKRKHEEGGLMVPMKKNLERDLRIVKNH   67 (67)
Q Consensus         1 Ed~ll~~~~~~~G~-kW~~Ia~~lpgRt~~~vknrw~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   67 (67)
                      ||++|++++..+|+ +|+.||.+|||||+++|++|| ..++.+.+.      ..+++.++|..++.+|
T Consensus        65 Ed~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw-~~~l~p~~~------~~~WT~eEd~~L~~~~  125 (159)
T 1h89_C           65 EDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERW-HNHLNPEVK------KTSWTEEEDRIIYQAH  125 (159)
T ss_dssp             HHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHH-HHTTCTTSC------CSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHH-HHHhCcccc------ccCCChHHHHHHHHHH
Confidence            78999999999996 699999999999999999999 888877644      4458888888887653

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.53  E-value=6.3e-15  Score=88.48  Aligned_cols=42  Identities=31%  Similarity=0.512  Sum_probs=39.0

Q ss_pred             ChHHHHHHHHhcCCcHHHHHhhCCCCChhhHHHHHHHhhhhhh
Q 039547            1 EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKRK   43 (67)
Q Consensus         1 Ed~ll~~~~~~~G~kW~~Ia~~lpgRt~~~vknrw~~~~l~~~   43 (67)
                      ||++|++++.++|++|+.||++|||||+++|+||| +..+++.
T Consensus        69 Ed~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw-~~l~~k~  110 (126)
T 3osg_A           69 EDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRW-VTISNKL  110 (126)
T ss_dssp             HHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHH-HHHHHHT
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHH-HHHHHhc
Confidence            79999999999999999999999999999999999 7766653

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.53  E-value=8.3e-15  Score=81.14  Aligned_cols=47  Identities=21%  Similarity=0.306  Sum_probs=42.8

Q ss_pred             ChHHHHHHHHhcC------CcHHHHHhhCCCCChhhHHHHHHHhhhhhhhhhCC
Q 039547            1 EDRLICRLFAISE------SRWSVIAAHLPGRTDNETNNYYKNTKLKRKHEEGG   48 (67)
Q Consensus         1 Ed~ll~~~~~~~G------~kW~~Ia~~lpgRt~~~vknrw~~~~l~~~~~~~~   48 (67)
                      ||++|++++..||      ++|..||.+|||||+++|++|| +.++.+.++...
T Consensus        15 Ed~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~-~~~l~~~~k~g~   67 (75)
T 2yum_A           15 EQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQV-QKYFIKLTKAGI   67 (75)
T ss_dssp             HHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHH-HHHHGGGSTTCS
T ss_pred             HHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHH-HHHHHHHHhcCC
Confidence            7999999999999      7999999999999999999999 999988765543

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.52  E-value=1.8e-14  Score=81.89  Aligned_cols=42  Identities=14%  Similarity=0.201  Sum_probs=38.3

Q ss_pred             ChHHHHHHHHhcCC-cHHHHHhh----CCCCChhhHHHHHHHhhhhhh
Q 039547            1 EDRLICRLFAISES-RWSVIAAH----LPGRTDNETNNYYKNTKLKRK   43 (67)
Q Consensus         1 Ed~ll~~~~~~~G~-kW~~Ia~~----lpgRt~~~vknrw~~~~l~~~   43 (67)
                      ||+.|++++.+||+ +|+.|++.    |+|||+++||+|| .++++..
T Consensus         7 Ed~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrW-rnllk~~   53 (83)
T 2ckx_A            7 EVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKW-KTLVHTA   53 (83)
T ss_dssp             HHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHH-HHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHH-HHHHHhc
Confidence            79999999999998 99999996    8999999999999 8877643

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.50  E-value=9.8e-15  Score=96.34  Aligned_cols=44  Identities=23%  Similarity=0.411  Sum_probs=41.7

Q ss_pred             ChHHHHHHHHhcCCc------HHHHHhhCCCCChhhHHHHHHHhhhhhhhh
Q 039547            1 EDRLICRLFAISESR------WSVIAAHLPGRTDNETNNYYKNTKLKRKHE   45 (67)
Q Consensus         1 Ed~ll~~~~~~~G~k------W~~Ia~~lpgRt~~~vknrw~~~~l~~~~~   45 (67)
                      ||++|+++|.++|++      |+.||++|||||+|+||||| +++|++++.
T Consensus        15 ED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw-~~~L~~~ln   64 (246)
T 1ign_A           15 EDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRF-RVYLSKRLE   64 (246)
T ss_dssp             HHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHH-HHTTGGGCC
T ss_pred             HHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHH-HHHHhhhcc
Confidence            799999999999986      99999999999999999999 999999864

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.50  E-value=2e-14  Score=78.05  Aligned_cols=42  Identities=17%  Similarity=0.242  Sum_probs=37.9

Q ss_pred             ChHHHHHHHHhcC-CcHHHHHhhCC--CCChhhHHHHHHHhhhhhh
Q 039547            1 EDRLICRLFAISE-SRWSVIAAHLP--GRTDNETNNYYKNTKLKRK   43 (67)
Q Consensus         1 Ed~ll~~~~~~~G-~kW~~Ia~~lp--gRt~~~vknrw~~~~l~~~   43 (67)
                      ||++|++++.+|| .+|+.||+.+|  |||+.+|++|| .+++++.
T Consensus        18 ED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw-~nl~k~g   62 (64)
T 3sjm_A           18 ESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRW-RTMKRLG   62 (64)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHH-HHHHHTT
T ss_pred             HHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHH-HHHhccC
Confidence            7999999999999 48999999976  99999999999 7777664

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.50  E-value=1.6e-14  Score=76.90  Aligned_cols=38  Identities=24%  Similarity=0.341  Sum_probs=35.6

Q ss_pred             ChHHHHHHHHhcC-CcHHHHHhhCC-CCChhhHHHHHHHhh
Q 039547            1 EDRLICRLFAISE-SRWSVIAAHLP-GRTDNETNNYYKNTK   39 (67)
Q Consensus         1 Ed~ll~~~~~~~G-~kW~~Ia~~lp-gRt~~~vknrw~~~~   39 (67)
                      ||.+|++++.++| ++|..||++|| |||+++|++|| ..+
T Consensus        16 ED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~-~~~   55 (58)
T 2elk_A           16 EELLLIDACETLGLGNWADIADYVGNARTKEECRDHY-LKT   55 (58)
T ss_dssp             HHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHH-HHH
T ss_pred             HHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHH-HHH
Confidence            7999999999999 89999999999 99999999999 543

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.48  E-value=7.6e-14  Score=84.10  Aligned_cols=66  Identities=12%  Similarity=0.070  Sum_probs=49.7

Q ss_pred             ChHHHHHHHHhcCC-cHHHHHhh----CCCCChhhHHHHHHHhhhhhhhhhCCCCCCCCCCHHHHHHHHhcC
Q 039547            1 EDRLICRLFAISES-RWSVIAAH----LPGRTDNETNNYYKNTKLKRKHEEGGLMVPMKKNLERDLRIVKNH   67 (67)
Q Consensus         1 Ed~ll~~~~~~~G~-kW~~Ia~~----lpgRt~~~vknrw~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   67 (67)
                      ||+.|++++.+||+ +|+.|++.    |+|||+++||+|| .++++............+.+.+.+..++.+|
T Consensus        24 Ed~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRW-rnllk~~~~~p~~krg~~~p~e~~~rv~~~h   94 (121)
T 2juh_A           24 EVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKW-KTLVHTASIAPQQRRGEPVPQDLLDRVLAAH   94 (121)
T ss_dssp             HHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHH-HHHHHHHHTCSTTCCCSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHH-HHHHhhhccCCcccCCCCCCHHHHHHHHHHH
Confidence            79999999999998 99999998    4999999999999 8888743333331222255566666666654

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.47  E-value=1.6e-14  Score=87.11  Aligned_cols=59  Identities=24%  Similarity=0.345  Sum_probs=51.8

Q ss_pred             ChHHHHHHHHhcC-CcHHHHHhhCCCCChhhHHHHHHHhhhhhhhhhCCCCCCCCCCHHHHHHHHhc
Q 039547            1 EDRLICRLFAISE-SRWSVIAAHLPGRTDNETNNYYKNTKLKRKHEEGGLMVPMKKNLERDLRIVKN   66 (67)
Q Consensus         1 Ed~ll~~~~~~~G-~kW~~Ia~~lpgRt~~~vknrw~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   66 (67)
                      ||++|++++..+| +.|..||..|||||+.+|+.|| ..+|.+.+..      .+++.++|..++.+
T Consensus         9 ED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw-~~~l~p~~~~------~~Wt~eEd~~L~~~   68 (131)
T 3zqc_A            9 EDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERW-FNHLDPAVVK------HAWTPEEDETIFRN   68 (131)
T ss_dssp             HHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHH-HHHTSTTCCC------SCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHH-hhccCccccC------CCCCHHHHHHHHHH
Confidence            7999999999999 6799999999999999999999 8888876544      45889999888765

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.42  E-value=9e-14  Score=77.35  Aligned_cols=38  Identities=16%  Similarity=0.325  Sum_probs=35.3

Q ss_pred             ChHHHHHHHHhcC----CcHHHHHhhCCCCChhhHHHHHHHhh
Q 039547            1 EDRLICRLFAISE----SRWSVIAAHLPGRTDNETNNYYKNTK   39 (67)
Q Consensus         1 Ed~ll~~~~~~~G----~kW~~Ia~~lpgRt~~~vknrw~~~~   39 (67)
                      ||.+|++++..||    ++|..||.+|||||+++|++|| +.+
T Consensus        25 Ed~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry-~~L   66 (73)
T 2cqr_A           25 QQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY-KLL   66 (73)
T ss_dssp             HHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHH-HHH
T ss_pred             HHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHH-HHH
Confidence            7899999999999    7899999999999999999999 543

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.38  E-value=5.7e-13  Score=80.38  Aligned_cols=65  Identities=12%  Similarity=0.090  Sum_probs=48.2

Q ss_pred             ChHHHHHHHHhcCC-cHHHHHhh----CCCCChhhHHHHHHHhhhhhhhhhCCCCCCCCCCHHH-HHHHHhcC
Q 039547            1 EDRLICRLFAISES-RWSVIAAH----LPGRTDNETNNYYKNTKLKRKHEEGGLMVPMKKNLER-DLRIVKNH   67 (67)
Q Consensus         1 Ed~ll~~~~~~~G~-kW~~Ia~~----lpgRt~~~vknrw~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~   67 (67)
                      ||+.|++.+.+||. +|+.|++.    |+|||+.+||+|| .++++....... +....+.+++ +..++.+|
T Consensus        38 Ed~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRW-rnllk~~~~~p~-~kr~~~~p~e~~~~v~~~h  108 (122)
T 2roh_A           38 EVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKW-KTLVHTASIAPQ-QRRGAPVPQELLDRVLAAQ  108 (122)
T ss_dssp             HHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHH-HHHHHHHHSCTT-TCCCSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHH-HHHHhhccCCcc-ccCCCCCCHHHHHHHHHHH
Confidence            79999999999997 99999986    4999999999999 887754433333 3333444444 45555554

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.33  E-value=5.7e-13  Score=74.94  Aligned_cols=38  Identities=18%  Similarity=0.346  Sum_probs=35.7

Q ss_pred             ChHHHHHHHHhcCCcHHHHHhhCCCCChhhHHHHHHHhh
Q 039547            1 EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTK   39 (67)
Q Consensus         1 Ed~ll~~~~~~~G~kW~~Ia~~lpgRt~~~vknrw~~~~   39 (67)
                      ||.+|++++.+||++|..||.+|+|||+.+|++|| ..+
T Consensus        25 Ed~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~-~~~   62 (79)
T 2yus_A           25 ETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHF-LRL   62 (79)
T ss_dssp             HHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHH-TTS
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHH-HHh
Confidence            79999999999999999999999999999999999 543

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.32  E-value=2.6e-12  Score=75.76  Aligned_cols=41  Identities=15%  Similarity=0.199  Sum_probs=37.4

Q ss_pred             ChHHHHHHHHhcCC-cHHHHHhhC----CCCChhhHHHHHHHhhhhh
Q 039547            1 EDRLICRLFAISES-RWSVIAAHL----PGRTDNETNNYYKNTKLKR   42 (67)
Q Consensus         1 Ed~ll~~~~~~~G~-kW~~Ia~~l----pgRt~~~vknrw~~~~l~~   42 (67)
                      ||+.|++.+.+||+ +|+.|++.+    +|||+++||++| .+.++.
T Consensus        20 Ed~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrW-rnllk~   65 (105)
T 2aje_A           20 EVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKW-KTLVHT   65 (105)
T ss_dssp             HHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHH-HHHHHT
T ss_pred             HHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHH-HHHHhh
Confidence            79999999999997 999999965    899999999999 877754

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.29  E-value=2.9e-12  Score=74.10  Aligned_cols=41  Identities=27%  Similarity=0.541  Sum_probs=36.8

Q ss_pred             ChHHHHHHHHhcC----CcHHHHHhhCCCCChhhHHHHHHHhhhhh
Q 039547            1 EDRLICRLFAISE----SRWSVIAAHLPGRTDNETNNYYKNTKLKR   42 (67)
Q Consensus         1 Ed~ll~~~~~~~G----~kW~~Ia~~lpgRt~~~vknrw~~~~l~~   42 (67)
                      ||.+|.+++..||    ++|..||.+|||||+++|++|| +.++..
T Consensus        15 Ed~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry-~~l~~d   59 (93)
T 2cjj_A           15 ENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHY-EILVED   59 (93)
T ss_dssp             HHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHH-HHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHH-HHHHHH
Confidence            7899999999996    7899999999999999999999 766544

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=99.27  E-value=3.7e-12  Score=68.89  Aligned_cols=40  Identities=15%  Similarity=0.259  Sum_probs=36.2

Q ss_pred             ChHHHHHHHHhcCCcHHHHH---hhCCCCChhhHHHHHHHhhhh
Q 039547            1 EDRLICRLFAISESRWSVIA---AHLPGRTDNETNNYYKNTKLK   41 (67)
Q Consensus         1 Ed~ll~~~~~~~G~kW~~Ia---~~lpgRt~~~vknrw~~~~l~   41 (67)
                      ||+.|++.|.+||.+|+.|+   .+|+|||+-++|++| ...++
T Consensus        15 E~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~-r~L~k   57 (62)
T 1x58_A           15 EVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKY-HRLIS   57 (62)
T ss_dssp             HHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHH-HHHHT
T ss_pred             HHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHH-HHHHh
Confidence            78999999999999999999   688999999999999 65444

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.07  E-value=1.2e-10  Score=62.32  Aligned_cols=37  Identities=19%  Similarity=0.281  Sum_probs=35.0

Q ss_pred             ChHHHHHHHHhcCCcHHHHHhhCCCCChhhHHHHHHHh
Q 039547            1 EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNT   38 (67)
Q Consensus         1 Ed~ll~~~~~~~G~kW~~Ia~~lpgRt~~~vknrw~~~   38 (67)
                      |++++++.+..+|.+|..||.+|||||..+|.++| +.
T Consensus        19 E~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Y-y~   55 (61)
T 2eqr_A           19 EKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYY-YL   55 (61)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHH-HH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHH-HH
Confidence            68899999999999999999999999999999999 54

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.83  E-value=1.9e-09  Score=70.69  Aligned_cols=41  Identities=12%  Similarity=0.215  Sum_probs=37.5

Q ss_pred             ChHHHHHHHHhcCCcHHHHHhhCCCCChhhHHHHHHHhhhhh
Q 039547            1 EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKR   42 (67)
Q Consensus         1 Ed~ll~~~~~~~G~kW~~Ia~~lpgRt~~~vknrw~~~~l~~   42 (67)
                      |+.++++.+..||+.|..||+.++|||.++|+++| +.+.++
T Consensus       140 E~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY-~~~kKR  180 (235)
T 2iw5_B          140 EQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFF-VNYRRR  180 (235)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHH-HHTTTT
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHH-HHHHHH
Confidence            67889999999999999999999999999999999 776655

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=98.78  E-value=1.2e-08  Score=58.88  Aligned_cols=47  Identities=15%  Similarity=0.126  Sum_probs=42.0

Q ss_pred             ChHHHHHHHHhcCCcHHHHHhhC-----CCCChhhHHHHHHHhhhhhhhhhCC
Q 039547            1 EDRLICRLFAISESRWSVIAAHL-----PGRTDNETNNYYKNTKLKRKHEEGG   48 (67)
Q Consensus         1 Ed~ll~~~~~~~G~kW~~Ia~~l-----pgRt~~~vknrw~~~~l~~~~~~~~   48 (67)
                      |++.|++|+.+||.+|..|+..+     ++||..++|+|| .+.+++.+...+
T Consensus        37 ETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~Ry-Y~v~~~l~~~r~   88 (93)
T 3hm5_A           37 ETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERY-YHICAKLANVRA   88 (93)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHH-HHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHH-HHHHHHHHHhcC
Confidence            68899999999999999999999     589999999999 888877666654

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.76  E-value=7.3e-09  Score=57.20  Aligned_cols=40  Identities=20%  Similarity=0.273  Sum_probs=34.9

Q ss_pred             ChHHHHHHHHhcC----CcHHHHHhhCCCCChhhHHHHHHHhhhhh
Q 039547            1 EDRLICRLFAISE----SRWSVIAAHLPGRTDNETNNYYKNTKLKR   42 (67)
Q Consensus         1 Ed~ll~~~~~~~G----~kW~~Ia~~lpgRt~~~vknrw~~~~l~~   42 (67)
                      ||++|.+++..|+    ++|..||.+| |||..+|+++| +.+...
T Consensus        15 E~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y-~~L~~d   58 (72)
T 2cqq_A           15 DLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKA-KQLKDS   58 (72)
T ss_dssp             HHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHH-HHHHHS
T ss_pred             HHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHH-HHHHHh
Confidence            6889999999997    6899999998 99999999999 655444

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=98.18  E-value=1.8e-06  Score=49.67  Aligned_cols=39  Identities=23%  Similarity=0.370  Sum_probs=35.3

Q ss_pred             ChHHHHHHHHhcCC---cHHHHHhhCCCCChhhHHHHHHHhhh
Q 039547            1 EDRLICRLFAISES---RWSVIAAHLPGRTDNETNNYYKNTKL   40 (67)
Q Consensus         1 Ed~ll~~~~~~~G~---kW~~Ia~~lpgRt~~~vknrw~~~~l   40 (67)
                      ||..||....+-|.   .|+.||+.|.+|+.++|+||| ...|
T Consensus        40 ~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RF-q~Lm   81 (95)
T 1ug2_A           40 ADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRF-RELM   81 (95)
T ss_dssp             HHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHH-HHHH
T ss_pred             cCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHH-HHHH
Confidence            58899999999997   799999999999999999999 6544

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.17  E-value=1.9e-06  Score=45.70  Aligned_cols=39  Identities=15%  Similarity=0.262  Sum_probs=34.1

Q ss_pred             ChHHHHHHHHhc--------CCc-HHHHHh-hCCCCChhhHHHHHHHhhh
Q 039547            1 EDRLICRLFAIS--------ESR-WSVIAA-HLPGRTDNETNNYYKNTKL   40 (67)
Q Consensus         1 Ed~ll~~~~~~~--------G~k-W~~Ia~-~lpgRt~~~vknrw~~~~l   40 (67)
                      ||.+|++.+.++        ||+ |..+|. .+|++|-.++++|| ...|
T Consensus         9 dD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy-~k~l   57 (59)
T 1fex_A            9 DDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRY-LKHL   57 (59)
T ss_dssp             HHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHH-HHHT
T ss_pred             HHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHH-HHHc
Confidence            689999999999        764 999999 89999999999999 4433

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=97.43  E-value=2.9e-07  Score=50.43  Aligned_cols=38  Identities=18%  Similarity=0.334  Sum_probs=34.1

Q ss_pred             ChHHHHHHHHhcCC---cHHHHHhhCCCCChhhHHHHHHHhhh
Q 039547            1 EDRLICRLFAISES---RWSVIAAHLPGRTDNETNNYYKNTKL   40 (67)
Q Consensus         1 Ed~ll~~~~~~~G~---kW~~Ia~~lpgRt~~~vknrw~~~~l   40 (67)
                      ||..|+..+.+-|.   .|+.||..| |||+++|+||| ...+
T Consensus        21 eDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF-~~Lm   61 (70)
T 2lr8_A           21 DDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERF-QQLM   61 (70)
Confidence            68899999999998   799999999 99999999999 5443

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.13  E-value=2.1e-06  Score=47.47  Aligned_cols=38  Identities=26%  Similarity=0.319  Sum_probs=32.1

Q ss_pred             ChHHHHHHHHhcC----CcHHHHHhhCCCCChhhHHHHHHHhh
Q 039547            1 EDRLICRLFAISE----SRWSVIAAHLPGRTDNETNNYYKNTK   39 (67)
Q Consensus         1 Ed~ll~~~~~~~G----~kW~~Ia~~lpgRt~~~vknrw~~~~   39 (67)
                      |+.+|......|+    .+|..||..+||||..+|+.+| ...
T Consensus        15 E~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY-~~l   56 (73)
T 1wgx_A           15 ELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKY-MEN   56 (73)
T ss_dssp             HHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHH-HHS
T ss_pred             HHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHH-HHH
Confidence            5667777778887    3799999999999999999999 544

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=97.43  E-value=1.7e-05  Score=43.90  Aligned_cols=35  Identities=26%  Similarity=0.473  Sum_probs=28.4

Q ss_pred             ChHHHHHHHHhcCC----cHHHHHhhCCCCChhhHHHHH
Q 039547            1 EDRLICRLFAISES----RWSVIAAHLPGRTDNETNNYY   35 (67)
Q Consensus         1 Ed~ll~~~~~~~G~----kW~~Ia~~lpgRt~~~vknrw   35 (67)
                      |++++-.....|+.    +|..||..+||||..+|+.+|
T Consensus        27 E~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY   65 (74)
T 4eef_G           27 ENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHY   65 (74)
T ss_dssp             HHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGG
T ss_pred             HHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHH
Confidence            34555556666663    799999999999999999998

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=97.39  E-value=0.00043  Score=39.74  Aligned_cols=47  Identities=15%  Similarity=0.126  Sum_probs=40.3

Q ss_pred             ChHHHHHHHHhcCCcHHHHHhhCC-----CCChhhHHHHHHHhhhhhhhhhCC
Q 039547            1 EDRLICRLFAISESRWSVIAAHLP-----GRTDNETNNYYKNTKLKRKHEEGG   48 (67)
Q Consensus         1 Ed~ll~~~~~~~G~kW~~Ia~~lp-----gRt~~~vknrw~~~~l~~~~~~~~   48 (67)
                      |-+.|++|...|+-+|..|+..+.     +||...+|.|| .+..++.+....
T Consensus        37 ETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RY-Y~V~~~l~~~r~   88 (93)
T 4iej_A           37 ETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERY-YHICAKLANVRA   88 (93)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHH-HHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHH-HHHHHHHHHhhC
Confidence            456899999999999999999884     79999999999 988877666554

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=97.32  E-value=0.00032  Score=40.03  Aligned_cols=35  Identities=26%  Similarity=0.340  Sum_probs=31.6

Q ss_pred             ChHHHHHHHHhcCCcHHHHHhhCCCCChhhHHHHH
Q 039547            1 EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYY   35 (67)
Q Consensus         1 Ed~ll~~~~~~~G~kW~~Ia~~lpgRt~~~vknrw   35 (67)
                      |-.+..+.+..+|..|..||..||+||..+|-..|
T Consensus        50 E~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~Y   84 (94)
T 4a69_C           50 EKETFREKFMQHPKNFGLIASFLERKTVAECVLYY   84 (94)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHH
Confidence            34567788999999999999999999999999988

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=97.23  E-value=0.00029  Score=46.56  Aligned_cols=26  Identities=15%  Similarity=0.157  Sum_probs=23.0

Q ss_pred             cHHHHHhhCCCCChhhHHHHHHHhhhh
Q 039547           15 RWSVIAAHLPGRTDNETNNYYKNTKLK   41 (67)
Q Consensus        15 kW~~Ia~~lpgRt~~~vknrw~~~~l~   41 (67)
                      .|..||+.+|+||++++|+|| ...++
T Consensus       173 ~fk~ia~~~P~HT~~SWRdRy-rKfl~  198 (246)
T 1ign_A          173 FFKHFAEEHAAHTENAWRDRF-RKFLL  198 (246)
T ss_dssp             HHHHHHHHTTTSCHHHHHHHH-HHTHH
T ss_pred             HHHHHHHHCCCCChhhHHHHH-HHHHh
Confidence            799999999999999999999 54443

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=97.20  E-value=0.00023  Score=50.82  Aligned_cols=36  Identities=8%  Similarity=0.182  Sum_probs=32.5

Q ss_pred             hHHHHHHHHhcCCcHHHHHhhCCCCChhhHHHHHHHh
Q 039547            2 DRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNT   38 (67)
Q Consensus         2 d~ll~~~~~~~G~kW~~Ia~~lpgRt~~~vknrw~~~   38 (67)
                      -.+.++.+.+||..|..||..++.||..+|+++| ..
T Consensus       388 ~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy-~~  423 (482)
T 2xag_B          388 QLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFF-VN  423 (482)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHH-HH
T ss_pred             HHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHH-HH
Confidence            4567888999999999999999999999999998 54

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.15  E-value=0.00067  Score=35.95  Aligned_cols=35  Identities=14%  Similarity=0.207  Sum_probs=30.4

Q ss_pred             HHHHHHHHhcCCcHHHHHh-hCCCCChhhHHHHHHHh
Q 039547            3 RLICRLFAISESRWSVIAA-HLPGRTDNETNNYYKNT   38 (67)
Q Consensus         3 ~ll~~~~~~~G~kW~~Ia~-~lpgRt~~~vknrw~~~   38 (67)
                      .+-.+.+..+|..|..|++ .+|+||..+|...| ..
T Consensus        18 ~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fY-Y~   53 (63)
T 2yqk_A           18 KRFVKGLRQYGKNFFRIRKELLPNKETGELITFY-YY   53 (63)
T ss_dssp             HHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHH-HH
T ss_pred             HHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHH-hc
Confidence            4566788999999999999 59999999999988 53

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=96.87  E-value=0.0018  Score=34.98  Aligned_cols=35  Identities=17%  Similarity=0.195  Sum_probs=30.5

Q ss_pred             HHHHHHHHhcCCcHHHHHh-hCCCCChhhHHHHHHHh
Q 039547            3 RLICRLFAISESRWSVIAA-HLPGRTDNETNNYYKNT   38 (67)
Q Consensus         3 ~ll~~~~~~~G~kW~~Ia~-~lpgRt~~~vknrw~~~   38 (67)
                      .+-.+.+..+|..|..|++ .+|+||..+|...| ..
T Consensus        17 ~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fY-Y~   52 (70)
T 2crg_A           17 CLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYY-YM   52 (70)
T ss_dssp             HHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHH-HH
T ss_pred             HHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHH-Hh
Confidence            4566788999999999999 69999999999988 53

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=95.52  E-value=0.0086  Score=32.97  Aligned_cols=42  Identities=12%  Similarity=0.290  Sum_probs=29.3

Q ss_pred             HHHHHHHHhcCC----------cHHHHHhhCC----CCChhhHHHHHHHhhhhhhhhh
Q 039547            3 RLICRLFAISES----------RWSVIAAHLP----GRTDNETNNYYKNTKLKRKHEE   46 (67)
Q Consensus         3 ~ll~~~~~~~G~----------kW~~Ia~~lp----gRt~~~vknrw~~~~l~~~~~~   46 (67)
                      .+||+++.++..          .|..||..|.    .||+.+|+++| .+ |++.++.
T Consensus        13 ~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~-~n-L~k~Yk~   68 (86)
T 2ebi_A           13 RSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKW-RN-LLKEFKK   68 (86)
T ss_dssp             HHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHH-HH-HHHHHCS
T ss_pred             HHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHH-HH-HHHHHHH
Confidence            456666665332          5999999873    79999999999 65 4443333

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=85.86  E-value=0.15  Score=36.45  Aligned_cols=34  Identities=18%  Similarity=0.342  Sum_probs=0.0

Q ss_pred             hHHHHHHHHhcCCcHHHHHhhCCCCChhhHHHHH
Q 039547            2 DRLICRLFAISESRWSVIAAHLPGRTDNETNNYY   35 (67)
Q Consensus         2 d~ll~~~~~~~G~kW~~Ia~~lpgRt~~~vknrw   35 (67)
                      ..+..+.+..||..|..|+++||+||-.+|-.+|
T Consensus       197 ~~lFe~al~~yGKdF~~I~~~lp~Ksv~e~V~yY  230 (482)
T 2xag_B          197 KVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFY  230 (482)
T ss_dssp             ----------------------------------
T ss_pred             HHHHHHHHHHcCccHHHHHHHcCCCCHHHHHHHh
Confidence            3455677889999999999999999999998876

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=81.15  E-value=2.1  Score=28.85  Aligned_cols=33  Identities=18%  Similarity=0.164  Sum_probs=28.2

Q ss_pred             HHHHHHHHhcCC-cHHHHHhhCCCCChhhHHHHH
Q 039547            3 RLICRLFAISES-RWSVIAAHLPGRTDNETNNYY   35 (67)
Q Consensus         3 ~ll~~~~~~~G~-kW~~Ia~~lpgRt~~~vknrw   35 (67)
                      ...+.....||. .|..||..|+|.|...|+.++
T Consensus       119 ~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~  152 (304)
T 1ofc_X          119 NQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYN  152 (304)
T ss_dssp             HHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHH
T ss_pred             HHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHH
Confidence            345677889995 899999999999999998765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	67
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	3e-06
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	5e-06
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	9e-06
d1ug2a_	95	a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu	2e-05
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	8e-05
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	4e-04
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	0.001

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (88), Expect = 3e-06
 Identities = 6/46 (13%), Positives = 18/46 (39%)

Query: 1  EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKRKHEE 46
          E  L  +        +  I+  +  ++  +  N++ N + +   +E
Sbjct: 12 EQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNIDE 57

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (87), Expect = 5e-06
 Identities = 11/45 (24%), Positives = 17/45 (37%)

Query: 1  EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKRKHE 45
          E       F      + +IA+ L  +T  E   YY  TK    ++
Sbjct: 24 EKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTKKNENYK 68

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.3 bits (84), Expect = 9e-06
 Identities = 17/38 (44%), Positives = 24/38 (63%)

Query: 1  EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNT 38
          EDR+I +      +RW+ IA  LPGRTDN   N++ +T
Sbjct: 8  EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNST 45

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.4 bits (84), Expect = 2e-05
 Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 4/52 (7%)

Query: 1  EDRLI---CRLFAISESRWSVIAAHLPGRTDNETNNYYKN-TKLKRKHEEGG 48
           DR+I   C+        +SVI+  L  +T  E ++ ++   +L     E G
Sbjct: 40 ADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHTACESG 91

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.5 bits (79), Expect = 8e-05
 Identities = 11/56 (19%), Positives = 20/56 (35%)

Query: 1  EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKRKHEEGGLMVPMKKN 56
          E  L  +  A    RW+ I+  +  RT  +  +Y +     +         P +K 
Sbjct: 9  EKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLDKETPNQKT 64

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 32.6 bits (74), Expect = 4e-04
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 5/56 (8%)

Query: 1  EDRLICRLFAI----SESRWSVIAAHLPGRTDNETNNYYKNTKLKRKHEEGGLMVP 52
          E++   R  A+    +  RW+ +A  + GRT  E   +Y+      K+ E G  VP
Sbjct: 8  ENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESG-KVP 62

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 31.8 bits (72), Expect = 0.001
 Identities = 8/43 (18%), Positives = 18/43 (41%), Gaps = 6/43 (13%)

Query: 1  EDRLICRLFAISESR------WSVIAAHLPGRTDNETNNYYKN 37
          ED  I  +   + +R      +  I+ ++P  T N   + ++ 
Sbjct: 8  EDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRV 50

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	67
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.79
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.63
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.63
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.62
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.58
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.42
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.42
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.4
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.39
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	99.32
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.31
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.28
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	99.25
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	99.25
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	97.78
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	97.43
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	96.43
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	95.07
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	84.07

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=2.2e-20  Score=95.26  Aligned_cols=40  Identities=43%  Similarity=0.730  Sum_probs=37.9

Q ss_pred             ChHHHHHHHHhcCCcHHHHHhhCCCCChhhHHHHHHHhhhh
Q 039547            1 EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLK   41 (67)
Q Consensus         1 Ed~ll~~~~~~~G~kW~~Ia~~lpgRt~~~vknrw~~~~l~   41 (67)
                      ||++|+++|.++|++|+.||++|||||+++||||| +.+++
T Consensus         8 ED~~L~~~v~~~G~~W~~Ia~~~~gRt~~~~knr~-~~~lr   47 (47)
T d1gv2a2           8 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHW-NSTMR   47 (47)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHH-HHHTC
T ss_pred             HHHHHHHHHHHHhhHHHHHHhHcCCCCHHHHHHHH-HHHcC
Confidence            79999999999999999999999999999999999 87664

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=6.9e-17  Score=83.50  Aligned_cols=41  Identities=34%  Similarity=0.599  Sum_probs=38.4

Q ss_pred             ChHHHHHHHHhcC-CcHHHHHhhCCCCChhhHHHHHHHhhhhh
Q 039547            1 EDRLICRLFAISE-SRWSVIAAHLPGRTDNETNNYYKNTKLKR   42 (67)
Q Consensus         1 Ed~ll~~~~~~~G-~kW~~Ia~~lpgRt~~~vknrw~~~~l~~   42 (67)
                      ||++|++++.++| .+|+.||+.|||||++||++|| +.+|.|
T Consensus        10 ED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qc~~Rw-~~~L~P   51 (52)
T d1gvda_          10 EDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERW-HNHLNP   51 (52)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHH-HHTTSC
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHH-HhhCCC
Confidence            7999999999999 5899999999999999999999 887765

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.63  E-value=4.5e-17  Score=91.85  Aligned_cols=54  Identities=20%  Similarity=0.247  Sum_probs=48.0

Q ss_pred             ChHHHHHHHHhcCCc------HHHHHhhCCCCChhhHHHHHHHhhhhhhhhhCCCCCCCCCC
Q 039547            1 EDRLICRLFAISESR------WSVIAAHLPGRTDNETNNYYKNTKLKRKHEEGGLMVPMKKN   56 (67)
Q Consensus         1 Ed~ll~~~~~~~G~k------W~~Ia~~lpgRt~~~vknrw~~~~l~~~~~~~~~~~~~~~~   56 (67)
                      ||++|++++.++|++      |+.||.+|||||++||++|| +.+|.+.+.... ++..+..
T Consensus         8 ED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw-~~~L~p~l~~~~-~t~~ed~   67 (86)
T d1igna1           8 EDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRF-RVYLSKRLEYVY-EVDKFGK   67 (86)
T ss_dssp             HHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHH-HHTTGGGCCCEE-CBCTTSC
T ss_pred             HHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHH-HHHcCccccCCC-CCCchhH
Confidence            899999999999975      99999999999999999999 999999987776 5555443

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=1.3e-16  Score=81.72  Aligned_cols=41  Identities=32%  Similarity=0.517  Sum_probs=38.5

Q ss_pred             ChHHHHHHHHhcC-CcHHHHHhhCCCCChhhHHHHHHHhhhhh
Q 039547            1 EDRLICRLFAISE-SRWSVIAAHLPGRTDNETNNYYKNTKLKR   42 (67)
Q Consensus         1 Ed~ll~~~~~~~G-~kW~~Ia~~lpgRt~~~vknrw~~~~l~~   42 (67)
                      ||++|++++..+| ++|+.||.+|||||+.||++|| +.+|.|
T Consensus         8 ED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw-~~~L~P   49 (50)
T d1guua_           8 EDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRW-QKVLNP   49 (50)
T ss_dssp             HHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHH-HHHHSC
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHH-HhhCCC
Confidence            7999999999999 5799999999999999999999 888865

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.1e-15  Score=81.44  Aligned_cols=47  Identities=26%  Similarity=0.291  Sum_probs=42.5

Q ss_pred             ChHHHHHHHHhcCCcHHHHHhhCCCCChhhHHHHHHHhhhhhhhhhCC
Q 039547            1 EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKLKRKHEEGG   48 (67)
Q Consensus         1 Ed~ll~~~~~~~G~kW~~Ia~~lpgRt~~~vknrw~~~~l~~~~~~~~   48 (67)
                      ||.+|++++..+|.+|..||.+|||||+.+|++|| +.++++......
T Consensus         9 Ed~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~ry-~~~~~~~~k~~~   55 (65)
T d2cu7a1           9 EKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYA-RQYFKNKVKCGL   55 (65)
T ss_dssp             HHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHH-HHHHHHHSCSCT
T ss_pred             HHHHHHHHHHHhcchHHHHHHHcCCCCHHHHHHHH-HHHHHHHHhcCC
Confidence            79999999999999999999999999999999999 888877655443

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=5.5e-14  Score=70.99  Aligned_cols=37  Identities=16%  Similarity=0.251  Sum_probs=34.6

Q ss_pred             ChHHHHHHHHhcCC-cHHHHHhhCCCCChhhHHHHHHHh
Q 039547            1 EDRLICRLFAISES-RWSVIAAHLPGRTDNETNNYYKNT   38 (67)
Q Consensus         1 Ed~ll~~~~~~~G~-kW~~Ia~~lpgRt~~~vknrw~~~   38 (67)
                      ||.+|++++..+|. +|..||.+|||||+.+|++|| ..
T Consensus         8 Ed~~L~~~v~~~G~~nW~~Ia~~~~~Rt~~Qcr~r~-~~   45 (47)
T d1x41a1           8 EEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHY-MK   45 (47)
T ss_dssp             HHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHH-HH
T ss_pred             HHHHHHHHHHHHCCccHHHHHHHcCCCCHHHHHHHH-HH
Confidence            79999999999995 799999999999999999999 54

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=7.9e-14  Score=72.38  Aligned_cols=42  Identities=14%  Similarity=0.182  Sum_probs=37.3

Q ss_pred             ChHHHHHHHHhcCC-cHHHHHhh--CCCCChhhHHHHHHHhhhhhh
Q 039547            1 EDRLICRLFAISES-RWSVIAAH--LPGRTDNETNNYYKNTKLKRK   43 (67)
Q Consensus         1 Ed~ll~~~~~~~G~-kW~~Ia~~--lpgRt~~~vknrw~~~~l~~~   43 (67)
                      ||++|++++.+||. +|+.||+.  |+|||+.+|++|| .+++++.
T Consensus         9 Ed~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rw-rn~~k~~   53 (55)
T d1w0ua_           9 ESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRW-RTMKRLG   53 (55)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHH-HHHHHTT
T ss_pred             HHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHH-HHHhcCC
Confidence            79999999999995 89999998  5699999999999 7766654

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.3e-13  Score=70.84  Aligned_cols=38  Identities=24%  Similarity=0.267  Sum_probs=34.4

Q ss_pred             ChHHHHHHHHhcCC-cHHHHHhhCC--CCChhhHHHHHHHhh
Q 039547            1 EDRLICRLFAISES-RWSVIAAHLP--GRTDNETNNYYKNTK   39 (67)
Q Consensus         1 Ed~ll~~~~~~~G~-kW~~Ia~~lp--gRt~~~vknrw~~~~   39 (67)
                      ||+.|++++.+||. +|+.||..+|  |||+.+|++|| .++
T Consensus         9 ED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw-~nl   49 (52)
T d1w0ta_           9 EDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRW-RTM   49 (52)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHH-HHH
T ss_pred             HHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHH-HHH
Confidence            79999999999996 8999999865  99999999999 654

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.39  E-value=3.2e-13  Score=75.10  Aligned_cols=58  Identities=10%  Similarity=0.035  Sum_probs=46.3

Q ss_pred             ChHHHHHHHHhcCC-cHHHHHhh----CCCCChhhHHHHHHHhhhhhhhhhCCCCCCCCCCHHHH
Q 039547            1 EDRLICRLFAISES-RWSVIAAH----LPGRTDNETNNYYKNTKLKRKHEEGGLMVPMKKNLERD   60 (67)
Q Consensus         1 Ed~ll~~~~~~~G~-kW~~Ia~~----lpgRt~~~vknrw~~~~l~~~~~~~~~~~~~~~~~~~~   60 (67)
                      ||+.|+.++.+||. +|+.|++.    ++|||+.+|++|| .++++....... ....++.+++.
T Consensus         7 Ed~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RW-rn~l~~~~~~~~-~~~~~~~p~el   69 (83)
T d2ckxa1           7 EVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKW-KTLVHTASIAPQ-QRRGEPVPQDL   69 (83)
T ss_dssp             HHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHH-HHHHHHHHSCGG-GCCSSCCCHHH
T ss_pred             HHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHH-HHHhhhhccCcc-cccCCCCCHHH
Confidence            79999999999995 89999975    6899999999999 988887665555 44444443333

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.32  E-value=1.1e-12  Score=74.75  Aligned_cols=41  Identities=22%  Similarity=0.361  Sum_probs=37.7

Q ss_pred             ChHHHHHHHHhcCCc---HHHHHhhCCCCChhhHHHHHHHhhhhh
Q 039547            1 EDRLICRLFAISESR---WSVIAAHLPGRTDNETNNYYKNTKLKR   42 (67)
Q Consensus         1 Ed~ll~~~~~~~G~k---W~~Ia~~lpgRt~~~vknrw~~~~l~~   42 (67)
                      ||.+||+.++++|++   |..||+.|+|||+++|+||| ...|+-
T Consensus        40 EDriIL~~~q~~G~~~~tw~~Ia~~L~~Rs~~qvr~Rf-~~Lm~l   83 (95)
T d1ug2a_          40 ADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRF-RELMQL   83 (95)
T ss_dssp             HHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHH-HHHHHH
T ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHH-HHHHHH
Confidence            799999999999988   99999999999999999999 765543

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.31  E-value=1e-12  Score=69.58  Aligned_cols=38  Identities=29%  Similarity=0.557  Sum_probs=35.0

Q ss_pred             ChHHHHHHHHhcCC----cHHHHHhhCCCCChhhHHHHHHHhh
Q 039547            1 EDRLICRLFAISES----RWSVIAAHLPGRTDNETNNYYKNTK   39 (67)
Q Consensus         1 Ed~ll~~~~~~~G~----kW~~Ia~~lpgRt~~~vknrw~~~~   39 (67)
                      ||.+|++++..||.    +|..||.+|||||+++|++|| +..
T Consensus         8 Ed~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~-~~L   49 (63)
T d2cjja1           8 ENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHY-EIL   49 (63)
T ss_dssp             HHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHH-HHH
T ss_pred             HHHHHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHH-HHH
Confidence            79999999999995    599999999999999999999 643

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.5e-12  Score=68.24  Aligned_cols=35  Identities=17%  Similarity=0.371  Sum_probs=33.5

Q ss_pred             ChHHHHHHHHhcCC----cHHHHHhhCCCCChhhHHHHH
Q 039547            1 EDRLICRLFAISES----RWSVIAAHLPGRTDNETNNYY   35 (67)
Q Consensus         1 Ed~ll~~~~~~~G~----kW~~Ia~~lpgRt~~~vknrw   35 (67)
                      ||++|++++..||.    +|..||.+|||||+.+|++||
T Consensus        19 Ed~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~   57 (60)
T d2cqra1          19 QQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY   57 (60)
T ss_dssp             HHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCccchHHHHHHHHcCCCCHHHHHHHH
Confidence            79999999999995    699999999999999999999

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.7e-12  Score=68.91  Aligned_cols=39  Identities=10%  Similarity=0.163  Sum_probs=36.4

Q ss_pred             ChHHHHHHHHhcCCcHHHHHhhCCCCChhhHHHHHHHhhh
Q 039547            1 EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNTKL   40 (67)
Q Consensus         1 Ed~ll~~~~~~~G~kW~~Ia~~lpgRt~~~vknrw~~~~l   40 (67)
                      ||.++++++..+|..|..||.+|||||..+|+++| +.+.
T Consensus        12 E~~~f~~~~~~~G~~w~~Ia~~~~~kt~~q~~~~y-~~~~   50 (65)
T d2iw5b1          12 EQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFF-VNYR   50 (65)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHH-HHTT
T ss_pred             HHHHHHHHHHHhCchHHHHHHHcCCCCHHHHHHHH-HHHH
Confidence            78999999999999999999999999999999999 6544

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.4e-12  Score=69.80  Aligned_cols=37  Identities=24%  Similarity=0.298  Sum_probs=35.4

Q ss_pred             ChHHHHHHHHhcCCcHHHHHhhCCCCChhhHHHHHHHh
Q 039547            1 EDRLICRLFAISESRWSVIAAHLPGRTDNETNNYYKNT   38 (67)
Q Consensus         1 Ed~ll~~~~~~~G~kW~~Ia~~lpgRt~~~vknrw~~~   38 (67)
                      ||+++++++.++|..|..||.+|||||..+|+++| ..
T Consensus        24 E~~~f~~~~~~~G~~w~~Ia~~~~~rt~~q~~~~y-y~   60 (68)
T d1xc5a1          24 EKETFREKFMQHPKNFGLIASFLERKTVAECVLYY-YL   60 (68)
T ss_dssp             THHHHHHHHHHTTSCSSSHHHHTTTSCHHHHHHHH-HH
T ss_pred             HHHHHHHHHHHHCCcHHHHHHHcCCCCHHHHHHHH-HH
Confidence            89999999999999999999999999999999999 54

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.78  E-value=1.4e-05  Score=40.66  Aligned_cols=36  Identities=19%  Similarity=0.230  Sum_probs=31.4

Q ss_pred             ChHHHHHHHHhcCCcHHHHHhh-CCCCChhhHHHHHHH
Q 039547            1 EDRLICRLFAISESRWSVIAAH-LPGRTDNETNNYYKN   37 (67)
Q Consensus         1 Ed~ll~~~~~~~G~kW~~Ia~~-lpgRt~~~vknrw~~   37 (67)
                      |-.+..+.+..+|..|..|++. +|+||..+|.+.| .
T Consensus         8 E~~~F~~~~~~yGKdf~~I~~~~v~~Ks~~~~v~fY-Y   44 (57)
T d2crga1           8 EACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYY-Y   44 (57)
T ss_dssp             HHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHH-H
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHcCCCCHHHHHHHH-H
Confidence            3456788999999999999985 6999999999998 5

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=0.0001  Score=37.79  Aligned_cols=34  Identities=24%  Similarity=0.351  Sum_probs=29.4

Q ss_pred             ChHHHHHHHHhcC----CcHHHHHhhCCCCChhhHHHHH
Q 039547            1 EDRLICRLFAISE----SRWSVIAAHLPGRTDNETNNYY   35 (67)
Q Consensus         1 Ed~ll~~~~~~~G----~kW~~Ia~~lpgRt~~~vknrw   35 (67)
                      |+.+|.+....|.    .+|..||..+ |||..+|..+|
T Consensus         8 e~~~le~Al~~~P~gt~~RW~~IA~~v-gkt~~ev~~~~   45 (59)
T d2cqqa1           8 DLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKA   45 (59)
T ss_dssp             HHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCCcHHHHHHHHHH-CCCHHHHHHHH
Confidence            4567777778886    5799999999 99999999999

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.43  E-value=0.0018  Score=32.92  Aligned_cols=39  Identities=15%  Similarity=0.269  Sum_probs=31.5

Q ss_pred             ChHHHHHHHHhcC--------Cc-HHHHHh-hCCCCChhhHHHHHHHhhh
Q 039547            1 EDRLICRLFAISE--------SR-WSVIAA-HLPGRTDNETNNYYKNTKL   40 (67)
Q Consensus         1 Ed~ll~~~~~~~G--------~k-W~~Ia~-~lpgRt~~~vknrw~~~~l   40 (67)
                      ||+.|++.+.++.        |+ |..+++ ..|.+|-.+.++|| ...|
T Consensus         9 eD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY-~K~L   57 (59)
T d1fexa_           9 DDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRY-LKHL   57 (59)
T ss_dssp             HHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHH-HHHT
T ss_pred             HHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHH-HHHh
Confidence            6899999887763        33 999985 68999999999999 5443

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.07  E-value=0.025  Score=27.16  Aligned_cols=33  Identities=15%  Similarity=0.284  Sum_probs=27.2

Q ss_pred             HHHHHHHHhcCCcHHHHHhhC---CCCChhhHHHHH
Q 039547            3 RLICRLFAISESRWSVIAAHL---PGRTDNETNNYY   35 (67)
Q Consensus         3 ~ll~~~~~~~G~kW~~Ia~~l---pgRt~~~vknrw   35 (67)
                      .-|+.-++.+|+.|..|-=.+   |||+.-.+-..|
T Consensus        10 ~YL~~GVK~~G~~WNsILWs~PF~~GR~~vdLA~Ky   45 (49)
T d1x58a1          10 NYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKY   45 (49)
T ss_dssp             HHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHH
T ss_pred             HHHHHHHHHhcchhhhhhhccCCCCCchhhHHHHHH
Confidence            457889999999999987544   799998887766

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.07  E-value=0.54  Score=23.58  Aligned_cols=33  Identities=6%  Similarity=-0.122  Sum_probs=25.9

Q ss_pred             HHHHHHHHhcCCcH---HHHHhh--CCCCChhhHHHHH
Q 039547            3 RLICRLFAISESRW---SVIAAH--LPGRTDNETNNYY   35 (67)
Q Consensus         3 ~ll~~~~~~~G~kW---~~Ia~~--lpgRt~~~vknrw   35 (67)
                      +..++.+..+|..|   ..|...  +||+|..+|+.+-
T Consensus        16 ~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHl   53 (64)
T d1irza_          16 NKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHL   53 (64)
T ss_dssp             HHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHH
T ss_pred             HHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHH
Confidence            45678889999877   356665  5899999999876