Citrus Sinensis ID: 039696

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210
Protein Sequence
MHYPKSNKSTNPSSSSGSGSGSNASAGPGRHPTYRGVRRRSSGKWVSEIREPRKPTRIWLGTFATPEMAAIAYDVAALALKGQEAELNFPNSAASLPVPASTSPRDIQAAAASAAAALGAAKDALSGETIAESGDHHQAPRNDSVMIEPAERPMVLQEFMDEELIFDMPNLLVNMAEGMLLSPPRLDIAGDAADDDDHGVGDEHNLWKFP
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHccccHHHHHHHHHHccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccEEEEEEEcccccEEEEEEccccccEEEEcccccHHHHHHHHHHHHHHHcccccEEccccHHHcccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHcccHHHHHHHHcccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mhypksnkstnpssssgsgsgsnasagpgrhptyrgvrrrssgkwvseireprkptriwlgtfatpEMAAIAYDVAALALKGqeaelnfpnsaaslpvpastsprDIQAAAASAAAALGAAKdalsgetiaesgdhhqaprndsvmiepaerpmvlqefmdeelifdmPNLLVNMAegmllspprldiagdaaddddhgvgdehnlwkfp
Flexible Loop (DISEMBL)
mhypksnkstnpssssgsgsgsnasagpgrhptyrgvrrrssgkwvseireprkptriwlgTFATPEMAAIAYDVAALALKGQEAELNFPNSAASLPVPASTSPRDIQAAAASAAAALGAAKDALSGETIAesgdhhqaprndSVMIEPAERPMVLQEFMDEELIFDMPNLLVNMAEGMLLSPPRLDIAGDAADDDDHGVGDEHNLWKFP
Low Complexity Region (SEG)
MHYpksnkstnpssssgsgsgsnasagpgRHPTYRGVRRRSSGKWVSEIREPRKPTRIWLGTFATPEMaaiaydvaalaLKGQEAELNFPNSAASLPVPASTSPRDIQaaaasaaaalgaakdalsgETIAESGDHHQAPRNDSVMIEPAERPMVLQEFMDEELIFDMPNLLVNMAEGMLLSPPRLdiagdaaddddhgvgdEHNLWKFP
Disordered region (IsUnstruct)
******************************************************PTRIWLGTFATPEMAAIAYDVAALALKG************************************************************************VLQEFMDEELIFDMPNLLVNMAEGMLLS****************************
Disordered Region (DISOPRED)
**********************************RGVRRRSSGKWVSEIREPRKPTRIWLGTFATPEMAAIAYDVAALALKGQEAELNFPNSAASL**********I**AAA*********************************************EFMDEELIFDMPNLLVNMAEGMLLSPPRLDIAGDAADDDDHGVGDEHNLWKFP
Disordered Region (DISEMBL)
***********************************************EIREPRKPTRIWLGTFATPEMAAIAYDVAALALKGQEAELNFPNSAAS****************************ALSGETIAESGDHHQAPRNDSVMIEPAERPMVLQEFMDEELIFDMPNLLVNMAEGMLLSPPRLDIAGDAADDDDHGVGDEHNLWKFP
Disordered Region (DISPRO)
****************************GRHPTYRGVRRRSSGKWVSEIREPRKPTRIWLGTFATPEMAAIAYDVAALALKGQEAELNFPNSAASLPVPASTSPRDIQAAAASAAAA***************************************QEFMDEELIFDMPNLLVNMAEGMLLSPPRLDI**************EHNLWKF*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHYPKSNKSTNPSSSSGSGSGSNASAGPGRHPTYRGVRRRSSGKWVSEIREPRKPTRIWLGTFATPEMAAIAYDVAALALKGQEAELNFPNSAASLPVPASTSPRDIQAAAASAAAALGAAKDALSGETIAESGDHHQAPRNDSVMIEPAERPMVLQEFMDEELIFDMPNLLVNMAEGMLLSPPRLDIAGDAADDDDHGVGDEHNLWKFP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	210	2.2.26 [Sep-21-2011]
Q9SJR0	184	Ethylene-responsive trans	yes	no	0.828	0.945	0.612	6e-45
Q9FJ93	224	Dehydration-responsive el	no	no	0.8	0.75	0.486	1e-35
P93835	213	Dehydration-responsive el	no	no	0.8	0.788	0.505	7e-35
Q9M0L0	216	Dehydration-responsive el	no	no	0.809	0.787	0.483	2e-34
Q9SYS6	216	Dehydration-responsive el	no	no	0.771	0.75	0.452	7e-34
Q8LBQ7	295	Ethylene-responsive trans	no	no	0.676	0.481	0.434	5e-30
Q8S9Z5	219	Dehydration-responsive el	no	no	0.7	0.671	0.477	2e-29
A2WZI4	219	Dehydration-responsive el	N/A	no	0.7	0.671	0.477	2e-29
Q39127	218	Ethylene-responsive trans	no	no	0.414	0.399	0.701	3e-29
Q9FJ90	232	Ethylene-responsive trans	no	no	0.838	0.758	0.491	4e-29

>sp|Q9SJR0|ERF24_ARATH Ethylene-responsive transcription factor ERF024 OS=Arabidopsis thaliana GN=ERF024 PE=2 SV=1

 Score =  180 bits (457), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 112/183 (61%), Positives = 133/183 (72%), Gaps = 9/183 (4%)

Query: 29  GRHPTYRGVR-RRSSGKWVSEIREPRKPTRIWLGTFATPEMAAIAYDVAALALKGQEAEL 87
           GRHP YRGVR R++S KWVSEIREPRKP RIWLGTF+TPEMAAIAYDVAALALKG +AEL
Sbjct: 10  GRHPLYRGVRQRKNSNKWVSEIREPRKPNRIWLGTFSTPEMAAIAYDVAALALKGSQAEL 69

Query: 88  NFPNSAASLPVPASTSPRDIQAAAASAAAALGAAKDALSGETIAESGDHHQAPRNDSVMI 147
           NFPNS +SLP P S SP DIQAAAASAAAA GAA+     + I  + ++ Q   +    +
Sbjct: 70  NFPNSVSSLPAPTSMSPADIQAAAASAAAAFGAAR-----DAIVMANNNSQT--SGVACM 122

Query: 148 EPAERPMVLQEFMDEELIFDMPNLLVNMAEGMLLSPPRLDIAGDAADDDDHGVGDEHNLW 207
             +     +  FMDE+L+FDMPN+L+NMAEGMLLSPPR  +   A D D    GD++ LW
Sbjct: 123 NSSYDNTNMNGFMDEDLVFDMPNVLMNMAEGMLLSPPRPTVFDAAYDADGFPGGDDY-LW 181

Query: 208 KFP 210
            FP
Sbjct: 182 NFP 184

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJ93|DRE1D_ARATH Dehydration-responsive element-binding protein 1D OS=Arabidopsis thaliana GN=DREB1D PE=2 SV=1

 Score =  149 bits (376), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 90/185 (48%), Positives = 112/185 (60%), Gaps = 17/185 (9%)

Query: 30  RHPTYRGVRRRSSGKWVSEIREPRKPTRIWLGTFATPEMAAIAYDVAALALKGQEAELNF 89
           RHP YRGVR+R+SGKWV E+REP K +RIWLGTF T EMAA A+DVAALAL+G+ A LNF
Sbjct: 50  RHPIYRGVRQRNSGKWVCEVREPNKKSRIWLGTFPTVEMAARAHDVAALALRGRSACLNF 109

Query: 90  PNSAASLPVPASTSPRDIQAAAASAAAALGAAKDALSGETIAE-SGDHHQAPRNDSVMIE 148
            +SA  L +P +T P++IQ AA+ AA        A   ET  E S    +A       + 
Sbjct: 110 ADSAWRLRIPETTCPKEIQKAASEAAM-------AFQNETTTEGSKTAAEAEEAAGEGVR 162

Query: 149 PAERPMVLQE----FMDEELIFDMPNLLVNMAEGMLLSPPRLDIAGDAADDDDHGVGDEH 204
             ER    Q     +MD+E +  MPN   NMAEGMLL PP  ++  +  D D  GVGD  
Sbjct: 163 EGERRAEEQNGGVFYMDDEALLGMPNFFENMAEGMLLPPP--EVGWNHNDFD--GVGDV- 217

Query: 205 NLWKF 209
           +LW F
Sbjct: 218 SLWSF 222

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation.

Arabidopsis thaliana (taxid: 3702)

>sp|P93835|DRE1B_ARATH Dehydration-responsive element-binding protein 1B OS=Arabidopsis thaliana GN=DREB1B PE=2 SV=2

 Score =  147 bits (370), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 92/182 (50%), Positives = 113/182 (62%), Gaps = 14/182 (7%)

Query: 30  RHPTYRGVRRRSSGKWVSEIREPRKPTRIWLGTFATPEMAAIAYDVAALALKGQEAELNF 89
           RHP YRGVR+R+SGKWVSE+REP K TRIWLGTF T EMAA A+DVAALAL+G+ A LNF
Sbjct: 44  RHPIYRGVRQRNSGKWVSEVREPNKKTRIWLGTFQTAEMAARAHDVAALALRGRSACLNF 103

Query: 90  PNSAASLPVPASTSPRDIQAAAASAAAALGAAKDALSGETIAESGDHHQAPRNDSVMIEP 149
            +SA  L +P ST  +DIQ AAA AA        A   ET   +  +H     ++ M+E 
Sbjct: 104 ADSAWRLRIPESTCAKDIQKAAAEAAL-------AFQDETCDTTTTNHGLDMEET-MVEA 155

Query: 150 AERPMVLQ--EFMDEELIFDMPNLLVNMAEGMLLSPPRLDIAGDAADDDDHGVGDEHNLW 207
              P   +   +MDEE +F MP LL NMAEGMLL PP +    +    D  G GD  +LW
Sbjct: 156 IYTPEQSEGAFYMDEETMFGMPTLLDNMAEGMLLPPPSVQWNHNY---DGEGDGDV-SLW 211

Query: 208 KF 209
            +
Sbjct: 212 SY 213

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M0L0|DRE1A_ARATH Dehydration-responsive element-binding protein 1A OS=Arabidopsis thaliana GN=DREB1A PE=1 SV=2

 Score =  145 bits (365), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 87/180 (48%), Positives = 109/180 (60%), Gaps = 10/180 (5%)

Query: 30  RHPTYRGVRRRSSGKWVSEIREPRKPTRIWLGTFATPEMAAIAYDVAALALKGQEAELNF 89
           RHP YRGVRRR+SGKWV E+REP K TRIWLGTF T EMAA A+DVAALAL+G+ A LNF
Sbjct: 47  RHPIYRGVRRRNSGKWVCEVREPNKKTRIWLGTFQTAEMAARAHDVAALALRGRSACLNF 106

Query: 90  PNSAASLPVPASTSPRDIQAAAASAAAALGAAKDALSGETIAESGDHHQAPRNDSVMIEP 149
            +SA  L +P ST  +DIQ AAA AA A    +D +   T     D  +         E 
Sbjct: 107 ADSAWRLRIPESTCAKDIQKAAAEAALAF---QDEMCDATTDHGFDMEETLVEAIYTAEQ 163

Query: 150 AERPMVLQEFMDEELIFDMPNLLVNMAEGMLLSPPRLDIAGDAADDDDHGVGDEHNLWKF 209
           +E       +M +E +F+MP+LL NMAEGMLL  P +    +   D D    D+ +LW +
Sbjct: 164 SENAF----YMHDEAMFEMPSLLANMAEGMLLPLPSVQWNHNHEVDGD---DDDVSLWSY 216

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYS6|DRE1C_ARATH Dehydration-responsive element-binding protein 1C OS=Arabidopsis thaliana GN=DREB1C PE=2 SV=2

 Score =  143 bits (361), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 85/188 (45%), Positives = 109/188 (57%), Gaps = 26/188 (13%)

Query: 30  RHPTYRGVRRRSSGKWVSEIREPRKPTRIWLGTFATPEMAAIAYDVAALALKGQEAELNF 89
           RHP YRGVR+R+SGKWV E+REP K TRIWLGTF T EMAA A+DVAA+AL+G+ A LNF
Sbjct: 47  RHPIYRGVRQRNSGKWVCELREPNKKTRIWLGTFQTAEMAARAHDVAAIALRGRSACLNF 106

Query: 90  PNSAASLPVPASTSPRDIQAAAASAAAALGAAKDALSGETIAESGDHHQAPRNDSVMIEP 149
            +SA  L +P ST  ++IQ AAA AA            E    + D H     ++ ++E 
Sbjct: 107 ADSAWRLRIPESTCAKEIQKAAAEAAL-------NFQDEMCHMTTDAHGLDMEET-LVEA 158

Query: 150 AERPMVLQE--FMDEELIFDMPNLLVNMAEGMLLSPP------RLDIAGDAADDDDHGVG 201
              P   Q+  +MDEE +  M +LL NMAEGMLL  P        D+ GD          
Sbjct: 159 IYTPEQSQDAFYMDEEAMLGMSSLLDNMAEGMLLPSPSVQWNYNFDVEGD---------- 208

Query: 202 DEHNLWKF 209
           D+ +LW +
Sbjct: 209 DDVSLWSY 216

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LBQ7|ERF34_ARATH Ethylene-responsive transcription factor ERF034 OS=Arabidopsis thaliana GN=ERF034 PE=2 SV=2

 Score =  130 bits (328), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 80/184 (43%), Positives = 100/184 (54%), Gaps = 42/184 (22%)

Query: 27  GPGRHPTYRGVRRRSSGKWVSEIREPRKPTRIWLGTFATPEMAAIAYDVAALALKGQEAE 86
           G  +HPTYRGVR RS GKWVSEIREPRK +RIWLGT+ T EMAA A+DVAALA+KG  A 
Sbjct: 93  GGDKHPTYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGTTAY 152

Query: 87  LNFPNSAASLPVPASTSPRDIQAAAASAAAALGAAKDALSGETIAESGDHHQAPRNDSVM 146
           LNFP  A  LP P + SP+DIQAAA+ AA     + + +S   +AE            V 
Sbjct: 153 LNFPKLAGELPRPVTNSPKDIQAAASLAAVNWQDSVNDVSNSEVAE-----------IVE 201

Query: 147 IEPAERPMVLQEFM------------------------------DEELIFDMPNLLVNMA 176
            EP+ R +V Q F                               +EE +FD+P+L  +  
Sbjct: 202 AEPS-RAVVAQLFSSDTSTTTTTQSQEYSEASCASTSACTDKDSEEEKLFDLPDLFTDEN 260

Query: 177 EGML 180
           E M+
Sbjct: 261 EMMI 264

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8S9Z5|DRE1F_ORYSJ Dehydration-responsive element-binding protein 1F OS=Oryza sativa subsp. japonica GN=DREB1F PE=3 SV=1

 Score =  129 bits (323), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 75/157 (47%), Positives = 98/157 (62%), Gaps = 10/157 (6%)

Query: 30  RHPTYRGVRRRSSG-KWVSEIREPRKPTRIWLGTFATPEMAAIAYDVAALALKGQE-AEL 87
           RHP YRGVR R+ G +WV E+REP+   RIWLGT+ TPEMAA A+DVAA+AL+G+  AEL
Sbjct: 43  RHPVYRGVRARAGGSRWVCEVREPQAQARIWLGTYPTPEMAARAHDVAAIALRGERGAEL 102

Query: 88  NFPNSAASLPVPASTSPRDIQAAAASAAAALGAAKDALSGETIAESGDHHQAPRNDSVMI 147
           NFP+S ++LP   + SP DI+ AAA AA         L+     + G         S   
Sbjct: 103 NFPDSPSTLPRARTASPEDIRLAAAQAAELYRRPPPPLALPEDPQEGTSGGGATATS--- 159

Query: 148 EPAERPMVLQEFMDEELIFDMPNLLVNMAEGMLLSPP 184
               RP  +  F+DE+ IFDMP L+ +MA GM+L+PP
Sbjct: 160 ---GRPAAV--FVDEDAIFDMPGLIDDMARGMMLTPP 191

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2WZI4|DRE1F_ORYSI Dehydration-responsive element-binding protein 1F OS=Oryza sativa subsp. indica GN=DREB1F PE=2 SV=1

 Score =  129 bits (323), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 75/157 (47%), Positives = 98/157 (62%), Gaps = 10/157 (6%)

Query: 30  RHPTYRGVRRRSSG-KWVSEIREPRKPTRIWLGTFATPEMAAIAYDVAALALKGQE-AEL 87
           RHP YRGVR R+ G +WV E+REP+   RIWLGT+ TPEMAA A+DVAA+AL+G+  AEL
Sbjct: 43  RHPVYRGVRARAGGSRWVCEVREPQAQARIWLGTYPTPEMAARAHDVAAIALRGERGAEL 102

Query: 88  NFPNSAASLPVPASTSPRDIQAAAASAAAALGAAKDALSGETIAESGDHHQAPRNDSVMI 147
           NFP+S ++LP   + SP DI+ AAA AA         L+     + G         S   
Sbjct: 103 NFPDSPSTLPRARTASPEDIRLAAAQAAELYRRPPPPLALPEDPQEGTSGGGATATS--- 159

Query: 148 EPAERPMVLQEFMDEELIFDMPNLLVNMAEGMLLSPP 184
               RP  +  F+DE+ IFDMP L+ +MA GM+L+PP
Sbjct: 160 ---GRPAAV--FVDEDAIFDMPGLIDDMARGMMLTPP 191

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q39127|TINY_ARATH Ethylene-responsive transcription factor TINY OS=Arabidopsis thaliana GN=TINY PE=2 SV=1

 Score =  128 bits (322), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 61/87 (70%), Positives = 71/87 (81%)

Query: 29  GRHPTYRGVRRRSSGKWVSEIREPRKPTRIWLGTFATPEMAAIAYDVAALALKGQEAELN 88
           G+HP YRGVR+R+ GKWVSEIREPRK +RIWLGTF +PEMAA A+DVAAL++KG  A LN
Sbjct: 31  GKHPVYRGVRKRNWGKWVSEIREPRKKSRIWLGTFPSPEMAARAHDVAALSIKGASAILN 90

Query: 89  FPNSAASLPVPASTSPRDIQAAAASAA 115
           FP+ A S P P+S SPRDIQ AA  AA
Sbjct: 91  FPDLAGSFPRPSSLSPRDIQVAALKAA 117

Putative transcriptional activator.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJ90|ERF25_ARATH Ethylene-responsive transcription factor ERF025 OS=Arabidopsis thaliana GN=ERF025 PE=2 SV=1

 Score =  128 bits (321), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 92/187 (49%), Positives = 113/187 (60%), Gaps = 11/187 (5%)

Query: 24  ASAGPGRHPTYRGVRRRSSGKWVSEIREPRKPTRIWLGTFATPEMAAIAYDVAALALKGQ 83
           A+   G+H  +RG+R R+ GKWVSEIREPRK TRIWLGT+  PEMAA AYDVAALALKG 
Sbjct: 55  ATGLSGKHSIFRGIRLRN-GKWVSEIREPRKTTRIWLGTYPVPEMAAAAYDVAALALKGP 113

Query: 84  EAELNFPNSAASLPVPASTSPRDIQAAAASAAAALGAAKDALSGETIAESGDHHQAPRND 143
           +A LNFP  A +   P S S  DI+AAA+ AA       D    E + E       P  +
Sbjct: 114 DAVLNFPGLALTYVAPVSNSAADIRAAASRAAEM--KQPDQGGDEKVLEP----VQPGKE 167

Query: 144 SVMIEPAERPMVLQEFMDEELIFDMPNLLVNMAEGMLLSPPRLDIAGDAADDD-DHGVGD 202
             + E +     L EFMDEE + +MP LL  MAEGML+SPPR+ I     DD  ++  GD
Sbjct: 168 EELEEVSCNSCSL-EFMDEEAMLNMPTLLTEMAEGMLMSPPRMMIHPTMEDDSPENHEGD 226

Query: 203 EHNLWKF 209
             NLW +
Sbjct: 227 --NLWSY 231

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	210
255575385	186	Dehydration-responsive element-binding p	0.804	0.908	0.767	3e-57
224086594	208	AP2/ERF domain-containing transcription	0.804	0.812	0.730	1e-55
359481983	301	PREDICTED: ethylene-responsive transcrip	0.780	0.544	0.712	3e-55
147781267	327	hypothetical protein VITISV_035581 [Viti	0.780	0.501	0.696	3e-54
297740073	199	unnamed protein product [Vitis vinifera]	0.780	0.824	0.701	4e-54
224137408	214	AP2/ERF domain-containing transcription	0.809	0.794	0.708	8e-54
356570831	188	PREDICTED: ethylene-responsive transcrip	0.876	0.978	0.624	7e-53
356557335	188	PREDICTED: ethylene-responsive transcrip	0.876	0.978	0.644	2e-52
449440474	183	PREDICTED: ethylene-responsive transcrip	0.838	0.961	0.641	1e-49
356537051	183	PREDICTED: ethylene-responsive transcrip	0.780	0.896	0.615	5e-46

>gi|255575385|ref|XP_002528595.1| Dehydration-responsive element-binding protein 1B, putative [Ricinus communis] gi|223531991|gb|EEF33803.1| Dehydration-responsive element-binding protein 1B, putative [Ricinus communis]

 Score =  227 bits (578), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 139/181 (76%), Positives = 151/181 (83%), Gaps = 12/181 (6%)

Query: 29  GRHPTYRGVRRRSSGKWVSEIREPRKPTRIWLGTFATPEMAAIAYDVAALALKGQEAELN 88
           GRHP YRGVRRRSSGKWVSEIREP+KP RIWLGTF TPEMAA+AYDVAALALKG++AELN
Sbjct: 17  GRHPVYRGVRRRSSGKWVSEIREPKKPNRIWLGTFPTPEMAAVAYDVAALALKGRDAELN 76

Query: 89  FPNSAASLPVPASTSPRDIQAAAASAAAALGAAKDALSGETIAESGDHHQAPRNDSVMIE 148
           FPNSAASLPVPAS SPRDIQAAAASAAAA+GAA+DAL    I  S   HQ      +M E
Sbjct: 77  FPNSAASLPVPASASPRDIQAAAASAAAAIGAARDALG---IGSSS--HQT----VIMQE 127

Query: 149 PAERPMVLQEFMDEELIFDMPNLLVNMAEGMLLSPPRLDIAGDAADDDDHGVGDEHNLWK 208
              RPMV  EF+DE+LIFDMPNLLVNMAEGMLLSPPRLDIA DAA DD++  GD+ NLWK
Sbjct: 128 SNYRPMV-HEFVDEDLIFDMPNLLVNMAEGMLLSPPRLDIAPDAAFDDENP-GDQ-NLWK 184

Query: 209 F 209
           F
Sbjct: 185 F 185

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224086594|ref|XP_002307914.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222853890|gb|EEE91437.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  221 bits (563), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 133/182 (73%), Positives = 146/182 (80%), Gaps = 13/182 (7%)

Query: 29  GRHPTYRGVRRRSSGKWVSEIREPRKPTRIWLGTFATPEMAAIAYDVAALALKGQEAELN 88
           G H  +RGVRRRSSGKWVSEIREP+KP RIWLGTF  PEMAA+AYDVAALALKGQ+AELN
Sbjct: 40  GHHHVFRGVRRRSSGKWVSEIREPKKPNRIWLGTFPNPEMAAVAYDVAALALKGQDAELN 99

Query: 89  FPNSAASLPVPASTSPRDIQAAAASAAAALGAAKDALSGETIAESGDHHQAPRNDSVMIE 148
           FPNSAASLPVPASTSPRDIQAAAASAAAA+GAAKDAL    I   GD +Q        +E
Sbjct: 100 FPNSAASLPVPASTSPRDIQAAAASAAAAIGAAKDALG---IRSMGDTNQ--------ME 148

Query: 149 PAERPMVLQEFMDEELIFDMPNLLVNMAEGMLLSPPRLDIAGDAADDDDHGVGDEHNLWK 208
              RPMV  +F+DE+L+FDMPN+LVNMAE MLLSPPRLDIAGD A   D   GD+ NLWK
Sbjct: 149 QEIRPMVNDQFVDEDLMFDMPNVLVNMAEAMLLSPPRLDIAGDDATAYD-STGDQ-NLWK 206

Query: 209 FP 210
           FP
Sbjct: 207 FP 208

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481983|ref|XP_002283401.2| PREDICTED: ethylene-responsive transcription factor ERF024 [Vitis vinifera]

 Score =  220 bits (560), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 129/181 (71%), Positives = 141/181 (77%), Gaps = 17/181 (9%)

Query: 30  RHPTYRGVRRRSSGKWVSEIREPRKPTRIWLGTFATPEMAAIAYDVAALALKGQEAELNF 89
           RHP YRGVRRRSSGKWVSEIREP+KP RIWLGTF TPEMAA+AYDVAALALKGQ+AELNF
Sbjct: 138 RHPVYRGVRRRSSGKWVSEIREPKKPNRIWLGTFPTPEMAAVAYDVAALALKGQDAELNF 197

Query: 90  PNSAASLPVPASTSPRDIQAAAASAAAALGAAKDALSGETIAESGDHHQAPRNDSVMIEP 149
           PNSA+SLPVPASTSPRDIQ AAASAAAA GAA DALSG      G    +P         
Sbjct: 198 PNSASSLPVPASTSPRDIQVAAASAAAAAGAAVDALSG------GGSTISP-------IA 244

Query: 150 AERPMVLQEFMDEELIFDMPNLLVNMAEGMLLSPPRLDIAGDAADDDDHGVGDEHNLWKF 209
             R M   EF+DE+LIFDMPNLLVNMAEGMLLSPPRLD+AG+ A  D  G   +H+LW +
Sbjct: 245 LGRSMA-NEFVDEDLIFDMPNLLVNMAEGMLLSPPRLDLAGEDATADFTG---DHSLWNY 300

Query: 210 P 210
           P
Sbjct: 301 P 301

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147781267|emb|CAN71903.1| hypothetical protein VITISV_035581 [Vitis vinifera]

 Score =  217 bits (552), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 126/181 (69%), Positives = 139/181 (76%), Gaps = 17/181 (9%)

Query: 30  RHPTYRGVRRRSSGKWVSEIREPRKPTRIWLGTFATPEMAAIAYDVAALALKGQEAELNF 89
           RHP YRGVRRRSSGKWVSEIREP+KP RIWLGTF TPEMAA+AYDVAALALKGQ+AELNF
Sbjct: 164 RHPVYRGVRRRSSGKWVSEIREPKKPNRIWLGTFPTPEMAAVAYDVAALALKGQDAELNF 223

Query: 90  PNSAASLPVPASTSPRDIQAAAASAAAALGAAKDALSGETIAESGDHHQAPRNDSVMIEP 149
           PNSA+SLPVPASTSP DIQ AAASAAAA GAA DALSG                S +   
Sbjct: 224 PNSASSLPVPASTSPHDIQVAAASAAAAAGAAVDALSG--------------GGSTISPI 269

Query: 150 AERPMVLQEFMDEELIFDMPNLLVNMAEGMLLSPPRLDIAGDAADDDDHGVGDEHNLWKF 209
           A    +  EF+DE+LIFDMPNLLVNMAEGMLLSPPRLD+AG+ A  D  G   +H+LW +
Sbjct: 270 ALGRSMANEFVDEDLIFDMPNLLVNMAEGMLLSPPRLDLAGEDATADFTG---DHSLWNY 326

Query: 210 P 210
           P
Sbjct: 327 P 327

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740073|emb|CBI30255.3| unnamed protein product [Vitis vinifera]

 Score =  216 bits (550), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 127/181 (70%), Positives = 140/181 (77%), Gaps = 17/181 (9%)

Query: 30  RHPTYRGVRRRSSGKWVSEIREPRKPTRIWLGTFATPEMAAIAYDVAALALKGQEAELNF 89
           RHP YRGVRRRSSGKWVSEIREP+KP RIWLGTF TPEMAA+AYDVAALALKGQ+AELNF
Sbjct: 36  RHPVYRGVRRRSSGKWVSEIREPKKPNRIWLGTFPTPEMAAVAYDVAALALKGQDAELNF 95

Query: 90  PNSAASLPVPASTSPRDIQAAAASAAAALGAAKDALSGETIAESGDHHQAPRNDSVMIEP 149
           PNSA+SLPVPASTSPRDIQ AAASAAAA GAA DALSG                S +   
Sbjct: 96  PNSASSLPVPASTSPRDIQVAAASAAAAAGAAVDALSG--------------GGSTISPI 141

Query: 150 AERPMVLQEFMDEELIFDMPNLLVNMAEGMLLSPPRLDIAGDAADDDDHGVGDEHNLWKF 209
           A    +  EF+DE+LIFDMPNLLVNMAEGMLLSPPRLD+AG+ A  D  G   +H+LW +
Sbjct: 142 ALGRSMANEFVDEDLIFDMPNLLVNMAEGMLLSPPRLDLAGEDATADFTG---DHSLWNY 198

Query: 210 P 210
           P
Sbjct: 199 P 199

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137408|ref|XP_002322550.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|148372099|gb|ABQ62981.1| TINY-like protein [Populus trichocarpa] gi|222867180|gb|EEF04311.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  215 bits (548), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 129/182 (70%), Positives = 141/182 (77%), Gaps = 12/182 (6%)

Query: 29  GRHPTYRGVRRRSSGKWVSEIREPRKPTRIWLGTFATPEMAAIAYDVAALALKGQEAELN 88
           G    +RGVRRRSSGKWVSEIREP+KP RIWLGTF  PEMAA+AYDVAALALKGQ A+LN
Sbjct: 45  GSQRAFRGVRRRSSGKWVSEIREPKKPNRIWLGTFPNPEMAAVAYDVAALALKGQNADLN 104

Query: 89  FPNSAASLPVPASTSPRDIQAAAASAAAALGAAKDALSGETIAESGDHHQAPRNDSVMIE 148
           FPNSAASLPVPASTSPRDIQAAAASAAAA+GAAKDAL    I   GD +Q        +E
Sbjct: 105 FPNSAASLPVPASTSPRDIQAAAASAAAAIGAAKDALG---IPNMGDTNQ--------ME 153

Query: 149 PAERPMVLQEFMDEELIFDMPNLLVNMAEGMLLSPPRLDIAGDAADDDDHGVGDEHNLWK 208
               P V  +F+DE+LIFDMPN+LVNMAEGMLLSPPRLDIAGD         GD+ NLWK
Sbjct: 154 QEITPTVDDQFVDEDLIFDMPNVLVNMAEGMLLSPPRLDIAGDETTTAYDNTGDQ-NLWK 212

Query: 209 FP 210
           FP
Sbjct: 213 FP 214

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356570831|ref|XP_003553587.1| PREDICTED: ethylene-responsive transcription factor ERF024-like [Glycine max]

 Score =  212 bits (540), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 123/197 (62%), Positives = 145/197 (73%), Gaps = 13/197 (6%)

Query: 14  SSSGSGSGSNASAGPGRHPTYRGVRRRSSGKWVSEIREPRKPTRIWLGTFATPEMAAIAY 73
           SS+G+ S   ++   GRHP YRGVRRRSSGKWVSEIREP+KP RIWLGTFATPEMAAIAY
Sbjct: 3   SSNGTSSSRASNGNTGRHPVYRGVRRRSSGKWVSEIREPKKPNRIWLGTFATPEMAAIAY 62

Query: 74  DVAALALKGQEAELNFPNSAASLPVPASTSPRDIQAAAASAAAALGAAKDALSGETIAES 133
           DVAALALKG++AELNFPNSA+SLP+PAS++  DIQ AAA AA A+GAA DAL G   ++ 
Sbjct: 63  DVAALALKGKDAELNFPNSASSLPIPASSAAHDIQMAAALAATAVGAANDALEG---SQG 119

Query: 134 GDHHQAPRNDSVMIEPAERPMVLQEFMDEELIFDMPNLLVNMAEGMLLSPPRLDIAGDAA 193
           G       N SV +        L  F+DE+LIFDMPN+LVNMAEGMLLSPPR D   + A
Sbjct: 120 G-------NVSVSLAEEFSGGNLNHFVDEDLIFDMPNILVNMAEGMLLSPPRFD---NFA 169

Query: 194 DDDDHGVGDEHNLWKFP 210
             D   + ++ NLW FP
Sbjct: 170 ATDYEYMDEDPNLWGFP 186

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557335|ref|XP_003546972.1| PREDICTED: ethylene-responsive transcription factor ERF024-like [Glycine max]

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 127/197 (64%), Positives = 146/197 (74%), Gaps = 13/197 (6%)

Query: 14  SSSGSGSGSNASAGPGRHPTYRGVRRRSSGKWVSEIREPRKPTRIWLGTFATPEMAAIAY 73
           SS+G+ S   ++A  GRHP YRGVRRRSSGKWVSEIREP+KP RIWLGTFATPEMAAIAY
Sbjct: 3   SSNGASSSRASNANTGRHPVYRGVRRRSSGKWVSEIREPKKPNRIWLGTFATPEMAAIAY 62

Query: 74  DVAALALKGQEAELNFPNSAASLPVPASTSPRDIQAAAASAAAALGAAKDALSGETIAES 133
           DVAALALKG++AELNFPNSA+SLPVPAS++ RDIQ AAASAAAA+GAA DAL G      
Sbjct: 63  DVAALALKGKDAELNFPNSASSLPVPASSAARDIQMAAASAAAAVGAANDALEGSRGG-- 120

Query: 134 GDHHQAPRNDSVMIEPAERPMVLQEFMDEELIFDMPNLLVNMAEGMLLSPPRLDIAGDAA 193
                   N SV +        L  F+DE+LIFDMPN+LVNMAEGMLLSPPR D   + A
Sbjct: 121 --------NASVSLTEEFSGGNLNHFVDEDLIFDMPNILVNMAEGMLLSPPRFD---NFA 169

Query: 194 DDDDHGVGDEHNLWKFP 210
             D   + ++ NLW FP
Sbjct: 170 ATDYEYMDEDPNLWGFP 186

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440474|ref|XP_004138009.1| PREDICTED: ethylene-responsive transcription factor ERF024-like [Cucumis sativus] gi|449521822|ref|XP_004167928.1| PREDICTED: ethylene-responsive transcription factor ERF024-like [Cucumis sativus]

 Score =  201 bits (512), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 118/184 (64%), Positives = 137/184 (74%), Gaps = 8/184 (4%)

Query: 29  GRHPTYRGVRRRSSGKWVSEIREPRKPTRIWLGTFATPEMAAIAYDVAALALKGQEAELN 88
           GRHP YRGVRRR++GKWVSEIREPRKP RIWLGTF T EMAA+AYDVAALALKGQ+AELN
Sbjct: 6   GRHPVYRGVRRRNTGKWVSEIREPRKPNRIWLGTFPTAEMAAVAYDVAALALKGQDAELN 65

Query: 89  FPNSAASLPVPASTSPRDIQAAAASAAAALGAAKDALSGETIAESGDHHQAPRNDSVMI- 147
           FPNSA+SLP+PAS SP DIQAAAASAAAALGAA  A+       S    +   ++ VM  
Sbjct: 66  FPNSASSLPIPASRSPSDIQAAAASAAAALGAAAAAMEARNNISS---RRGSHSEDVMYG 122

Query: 148 -EPAERPMVLQEFMDEELIFDMPNLLVNMAEGMLLSPPRLDIAGDAADDDDHGVGDEHNL 206
               +   +  +FMDE+LIFDMPN+L+NMAEGMLLSPPR +  G    DD+   G + NL
Sbjct: 123 ARYGQEYELGNQFMDEDLIFDMPNVLMNMAEGMLLSPPRFNNHG---GDDNRDFGTDQNL 179

Query: 207 WKFP 210
           W FP
Sbjct: 180 WNFP 183

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356537051|ref|XP_003537044.1| PREDICTED: ethylene-responsive transcription factor ERF024-like [Glycine max]

 Score =  189 bits (481), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 109/177 (61%), Positives = 130/177 (73%), Gaps = 13/177 (7%)

Query: 34  YRGVRRRSSGKWVSEIREPRKPTRIWLGTFATPEMAAIAYDVAALALKGQEAELNFPNSA 93
           YRGVRRR+SGKWVSEIREP+KP RIWLGTF TPEMAA+AYDVAALALKG++A LNFP+SA
Sbjct: 20  YRGVRRRTSGKWVSEIREPKKPNRIWLGTFPTPEMAAVAYDVAALALKGKDAGLNFPDSA 79

Query: 94  ASLPVPASTSPRDIQAAAASAAAALGAAKDALSGETIAESGDHHQAPRNDSVMIEPAERP 153
           +SLPVPAS S RDIQ AAA+AAAA GAA DA+  +T   + +  +A  N + M       
Sbjct: 80  SSLPVPASLSARDIQVAAAAAAAAAGAANDAMRTQT--ANNNFSEAQENQTGMS------ 131

Query: 154 MVLQEFMDEELIFDMPNLLVNMAEGMLLSPPRLDIAGDAADDDDHGVGDEHNLWKFP 210
               +F+DE+LIFDMPN+LVNMA+GMLLSPP  DI  +   +       E NLW FP
Sbjct: 132 ---NQFVDEDLIFDMPNVLVNMAQGMLLSPPPFDIGLEP--NSPENTEQETNLWNFP 183

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	210
TAIR|locus:2044845	184	HRD "HARDY" [Arabidopsis thali	0.823	0.940	0.456	4.4e-36
TAIR|locus:2195062	192	AT1G12630 [Arabidopsis thalian	0.733	0.802	0.442	1.3e-27
TAIR|locus:2131854	213	CBF1 "C-repeat/DRE binding fac	0.7	0.690	0.452	1.3e-27
TAIR|locus:2173113	224	CBF4 "C-repeat-binding factor	0.733	0.687	0.405	2.5e-26
TAIR|locus:2131849	216	DREB1A "dehydration response e	0.704	0.685	0.419	5.9e-25
TAIR|locus:2173063	232	AT5G52020 [Arabidopsis thalian	0.814	0.737	0.383	7.6e-25
TAIR|locus:2131834	216	CBF2 "C-repeat/DRE binding fac	0.7	0.680	0.420	2.6e-24
TAIR|locus:2055007	295	AT2G44940 [Arabidopsis thalian	0.376	0.267	0.594	3e-24
TAIR|locus:2145249	218	tny "TINY" [Arabidopsis thalia	0.376	0.362	0.607	4.3e-22
TAIR|locus:2144296	236	TINY2 "AT5G11590" [Arabidopsis	0.376	0.334	0.620	1.1e-21

TAIR|locus:2044845 HRD "HARDY" [Arabidopsis thaliana (taxid:3702)]

 Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
 Identities = 83/182 (45%), Positives = 102/182 (56%)

Query:    30 RHPTYRGVR-RRSSGKWVSEIREPRKPTRIWLGTFATPEMXXXXXXXXXXXLKGQEAELN 88
             RHP YRGVR R++S KWVSEIREPRKP RIWLGTF+TPEM           LKG +AELN
Sbjct:    11 RHPLYRGVRQRKNSNKWVSEIREPRKPNRIWLGTFSTPEMAAIAYDVAALALKGSQAELN 70

Query:    89 FPNSAASLPVPASTSPRDIQXXXXXXXXXXXXXXXXXXXETIAESGDHHQAPRNDSVMIE 148
             FPNS +SLP P S SP DIQ                   + I  + ++ Q   +    + 
Sbjct:    71 FPNSVSSLPAPTSMSPADIQAAAASAAAAFGAAR-----DAIVMANNNSQT--SGVACMN 123

Query:   149 PAERPMVLQEFMDEELIFDMPNLLVNMAEGMLLSPPRLXXXXXXXXXXXXXXXXEHNLWK 208
              +     +  FMDE+L+FDMPN+L+NMAEGMLLSPPR                 ++ LW 
Sbjct:   124 SSYDNTNMNGFMDEDLVFDMPNVLMNMAEGMLLSPPRPTVFDAAYDADGFPGGDDY-LWN 182

Query:   209 FP 210
             FP
Sbjct:   183 FP 184

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

GO:0050832 "defense response to fungus" evidence=IEP

TAIR|locus:2195062 AT1G12630 [Arabidopsis thaliana (taxid:3702)]

 Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 69/156 (44%), Positives = 82/156 (52%)

Query:    30 RHPTYRGVRRRSSGKWVSEIREPRKPTRIWLGTFATPEMXXXXXXXXXXXLKGQEAELNF 89
             + P YRG+R RS GKWVSEIREPRK TRIWLGT+   EM           LKG+EA LNF
Sbjct:    15 KDPVYRGIRCRS-GKWVSEIREPRKTTRIWLGTYPMAEMAAAAYDVAAMALKGREAVLNF 73

Query:    90 PNSAASLPVPASTSPRDIQXXXXXXXXXXXXXXXXXXXETIAE-SGDHHQAPRNDSVMIE 148
             P S  S PVP STS  DI+                   +   + S       R   V  +
Sbjct:    74 PGSVGSYPVPESTSAADIRAAAAAAAAMKGCEEGEEEKKAKEKKSSSSKSRARECHVDND 133

Query:   149 PAERPMVLQEFMDEELIFDMPNLLVNMAEGMLLSPP 184
                      EFMDEE + +MPNLL NMAEGM+++PP
Sbjct:   134 VGSSSWCGTEFMDEEEVLNMPNLLANMAEGMMVAPP 169

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2131854 CBF1 "C-repeat/DRE binding factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 71/157 (45%), Positives = 87/157 (55%)

Query:    30 RHPTYRGVRRRSSGKWVSEIREPRKPTRIWLGTFATPEMXXXXXXXXXXXLKGQEAELNF 89
             RHP YRGVR+R+SGKWVSE+REP K TRIWLGTF T EM           L+G+ A LNF
Sbjct:    44 RHPIYRGVRQRNSGKWVSEVREPNKKTRIWLGTFQTAEMAARAHDVAALALRGRSACLNF 103

Query:    90 PNSAASLPVPASTSPRDIQXXXXXXXXXXXXXXXXXXXETIAESGDHHQAPRNDSVMIEP 149
              +SA  L +P ST  +DIQ                   ET   +  +H     ++ M+E 
Sbjct:   104 ADSAWRLRIPESTCAKDIQKAAAEAALAFQD-------ETCDTTTTNHGLDMEET-MVEA 155

Query:   150 AERPMVLQE--FMDEELIFDMPNLLVNMAEGMLLSPP 184
                P   +   +MDEE +F MP LL NMAEGMLL PP
Sbjct:   156 IYTPEQSEGAFYMDEETMFGMPTLLDNMAEGMLLPPP 192

GO:0003677 "DNA binding" evidence=IEA;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009409 "response to cold" evidence=IEP;IMP;TAS

GO:0009631 "cold acclimation" evidence=IEP;IMP

GO:0009414 "response to water deprivation" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IGI;IDA

TAIR|locus:2173113 CBF4 "C-repeat-binding factor 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 64/158 (40%), Positives = 84/158 (53%)

Query:    30 RHPTYRGVRRRSSGKWVSEIREPRKPTRIWLGTFATPEMXXXXXXXXXXXLKGQEAELNF 89
             RHP YRGVR+R+SGKWV E+REP K +RIWLGTF T EM           L+G+ A LNF
Sbjct:    50 RHPIYRGVRQRNSGKWVCEVREPNKKSRIWLGTFPTVEMAARAHDVAALALRGRSACLNF 109

Query:    90 PNSAASLPVPASTSPRDIQXXXXXXXXXXXXXXXXXXXETIAESGDHH-QAPRNDSVMIE 148
              +SA  L +P +T P++IQ                   +T AE+ +   +  R      E
Sbjct:   110 ADSAWRLRIPETTCPKEIQKAASEAAMAFQNETTTEGSKTAAEAEEAAGEGVREGERRAE 169

Query:   149 PAERPMVLQEFMDEELIFDMPNLLVNMAEGMLLSPPRL 186
                  +    +MD+E +  MPN   NMAEGMLL PP +
Sbjct:   170 EQNGGVF---YMDDEALLGMPNFFENMAEGMLLPPPEV 204

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2131849 DREB1A "dehydration response element B1A" [Arabidopsis thaliana (taxid:3702)]

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 65/155 (41%), Positives = 80/155 (51%)

Query:    30 RHPTYRGVRRRSSGKWVSEIREPRKPTRIWLGTFATPEMXXXXXXXXXXXLKGQEAELNF 89
             RHP YRGVRRR+SGKWV E+REP K TRIWLGTF T EM           L+G+ A LNF
Sbjct:    47 RHPIYRGVRRRNSGKWVCEVREPNKKTRIWLGTFQTAEMAARAHDVAALALRGRSACLNF 106

Query:    90 PNSAASLPVPASTSPRDIQXXXXXXXXXXXXXXXXXXXETIAESGDHHQAPRNDSVMIEP 149
              +SA  L +P ST  +DIQ                   +      D  +         E 
Sbjct:   107 ADSAWRLRIPESTCAKDIQKAAAEAALAFQDEMCDATTD---HGFDMEETLVEAIYTAEQ 163

Query:   150 AERPMVLQEFMDEELIFDMPNLLVNMAEGMLLSPP 184
             +E       +M +E +F+MP+LL NMAEGMLL  P
Sbjct:   164 SENAF----YMHDEAMFEMPSLLANMAEGMLLPLP 194

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009409 "response to cold" evidence=IEP;RCA;IDA;IMP;TAS

GO:0009414 "response to water deprivation" evidence=RCA;IMP;IDA

GO:0009631 "cold acclimation" evidence=IMP

GO:0005982 "starch metabolic process" evidence=RCA

GO:0007623 "circadian rhythm" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2173063 AT5G52020 [Arabidopsis thaliana (taxid:3702)]

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 69/180 (38%), Positives = 87/180 (48%)

Query:    30 RHPTYRGVRRRSSGKWVSEIREPRKPTRIWLGTFATPEMXXXXXXXXXXXLKGQEAELNF 89
             +H  +RG+R R+ GKWVSEIREPRK TRIWLGT+  PEM           LKG +A LNF
Sbjct:    61 KHSIFRGIRLRN-GKWVSEIREPRKTTRIWLGTYPVPEMAAAAYDVAALALKGPDAVLNF 119

Query:    90 PNSAASLPVPASTSPRDIQXXXXXXXXXXXXXXXXXXXETIAESGDHHQAPRNDSVMIEP 149
             P  A +   P S S  DI+                   E + E       P  +  + E 
Sbjct:   120 PGLALTYVAPVSNSAADIRAAASRAAEMKQPDQGGD--EKVLEPVQ----PGKEEELEEV 173

Query:   150 AERPMVLQEFMDEELIFDMPNLLVNMAEGMLLSPPRLXXXXXXXXXXXXXXXXEHNLWKF 209
             +     L EFMDEE + +MP LL  MAEGML+SPPR+                + NLW +
Sbjct:   174 SCNSCSL-EFMDEEAMLNMPTLLTEMAEGMLMSPPRMMIHPTMEDDSPENHEGD-NLWSY 231

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

GO:0050832 "defense response to fungus" evidence=IEP

TAIR|locus:2131834 CBF2 "C-repeat/DRE binding factor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 66/157 (42%), Positives = 84/157 (53%)

Query:    30 RHPTYRGVRRRSSGKWVSEIREPRKPTRIWLGTFATPEMXXXXXXXXXXXLKGQEAELNF 89
             RHP YRGVR+R+SGKWV E+REP K TRIWLGTF T EM           L+G+ A LNF
Sbjct:    47 RHPIYRGVRQRNSGKWVCELREPNKKTRIWLGTFQTAEMAARAHDVAAIALRGRSACLNF 106

Query:    90 PNSAASLPVPASTSPRDIQXXXXXXXXXXXXXXXXXXXETIAESGDHHQAPRNDSVMIEP 149
              +SA  L +P ST  ++IQ                   E    + D H     ++ ++E 
Sbjct:   107 ADSAWRLRIPESTCAKEIQKAAAEAALNFQD-------EMCHMTTDAHGLDMEET-LVEA 158

Query:   150 AERPMVLQE--FMDEELIFDMPNLLVNMAEGMLLSPP 184
                P   Q+  +MDEE +  M +LL NMAEGMLL  P
Sbjct:   159 IYTPEQSQDAFYMDEEAMLGMSSLLDNMAEGMLLPSP 195

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009631 "cold acclimation" evidence=IMP

GO:0009409 "response to cold" evidence=IEP;TAS

TAIR|locus:2055007 AT2G44940 [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 3.0e-24, Sum P(2) = 3.0e-24
 Identities = 47/79 (59%), Positives = 53/79 (67%)

Query:    30 RHPTYRGVRRRSSGKWVSEIREPRKPTRIWLGTFATPEMXXXXXXXXXXXLKGQEAELNF 89
             +HPTYRGVR RS GKWVSEIREPRK +RIWLGT+ T EM           +KG  A LNF
Sbjct:    96 KHPTYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGTTAYLNF 155

Query:    90 PNSAASLPVPASTSPRDIQ 108
             P  A  LP P + SP+DIQ
Sbjct:   156 PKLAGELPRPVTNSPKDIQ 174

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2145249 tny "TINY" [Arabidopsis thaliana (taxid:3702)]

 Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
 Identities = 48/79 (60%), Positives = 56/79 (70%)

Query:    30 RHPTYRGVRRRSSGKWVSEIREPRKPTRIWLGTFATPEMXXXXXXXXXXXLKGQEAELNF 89
             +HP YRGVR+R+ GKWVSEIREPRK +RIWLGTF +PEM           +KG  A LNF
Sbjct:    32 KHPVYRGVRKRNWGKWVSEIREPRKKSRIWLGTFPSPEMAARAHDVAALSIKGASAILNF 91

Query:    90 PNSAASLPVPASTSPRDIQ 108
             P+ A S P P+S SPRDIQ
Sbjct:    92 PDLAGSFPRPSSLSPRDIQ 110

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009825 "multidimensional cell growth" evidence=IMP

TAIR|locus:2144296 TINY2 "AT5G11590" [Arabidopsis thaliana (taxid:3702)]

 Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 49/79 (62%), Positives = 53/79 (67%)

Query:    30 RHPTYRGVRRRSSGKWVSEIREPRKPTRIWLGTFATPEMXXXXXXXXXXXLKGQEAELNF 89
             +HP YRGVR R+ GKWVSEIREPRK +RIWLGTF TPEM           +KG  A LNF
Sbjct:    47 KHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGTAAILNF 106

Query:    90 PNSAASLPVPASTSPRDIQ 108
             P  A S P P S SPRDIQ
Sbjct:   107 PELADSFPRPVSLSPRDIQ 125

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SJR0	ERF24_ARATH	No assigned EC number	0.6120	0.8285	0.9456	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00021663001 SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (199 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	210
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	3e-31
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	4e-29
pfam00847	53	pfam00847, AP2, AP2 domain	4e-14

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score =  108 bits (272), Expect = 3e-31
 Identities = 38/59 (64%), Positives = 44/59 (74%)

Query: 34 YRGVRRRSSGKWVSEIREPRKPTRIWLGTFATPEMAAIAYDVAALALKGQEAELNFPNS 92
          YRGVR+R  GKWV+EIR+P K  R+WLGTF T E AA AYD AA   +G+ A LNFPNS
Sbjct: 2  YRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNS 60

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score =  103 bits (258), Expect = 4e-29
 Identities = 39/59 (66%), Positives = 44/59 (74%)

Query: 34 YRGVRRRSSGKWVSEIREPRKPTRIWLGTFATPEMAAIAYDVAALALKGQEAELNFPNS 92
          YRGVR+R  GKWV+EIR+P    RIWLGTF T E AA AYD AAL L+G  A LNFP+S
Sbjct: 3  YRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS 61

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 63.8 bits (156), Expect = 4e-14
 Identities = 26/54 (48%), Positives = 32/54 (59%), Gaps = 4/54 (7%)

Query: 32 PTYRGVRRRSS-GKWVSEIREP--RKPTRIWLGTFATPEMAAIAYDVAALALKG 82
            Y+GVR     G+WV+EIR+P  +K  R  LGTF T E AA A   A L L+G
Sbjct: 1  SGYKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGT-EEAARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	210
PHA00280	121	putative NHN endonuclease	99.86
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.84
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.81
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.11
PF13392	46	HNH_3: HNH endonuclease; PDB: 1U3E_M.	85.18
PF14657	46	Integrase_AP2: AP2-like DNA-binding integrase doma	82.07

>PHA00280 putative NHN endonuclease

Probab=99.86  E-value=2.3e-22  Score=159.04  Aligned_cols=82  Identities=16%  Similarity=0.165  Sum_probs=75.5

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeEEEEC-CCCcEEEEEecCCCCceeecCCCCCHHHHHHHHHHHHHHhc
Q 039696            3 YPKSNKSTNPSSSSGSGSGSNASAGPGRHPTYRGVRRR-SSGKWVSEIREPRKPTRIWLGTFATPEMAAIAYDVAALALK   81 (210)
Q Consensus         3 ~p~dNr~sNLR~at~~~n~~n~~~~~~~~s~yrGVr~r-~~gkW~A~I~~~~k~~ri~LGtf~t~EeAA~AyD~aa~~l~   81 (210)
                      .|.||||+|||++|+++|++|++.+++|+|||+||+++ ..|||+|+|++.+|  +++||.|+|+|+|+.||+ ++.+|+
T Consensus        38 ~~~dnri~NLr~~T~~eN~~N~~~~~~N~SG~kGV~~~k~~~kw~A~I~~~gK--~~~lG~f~~~e~A~~a~~-~~~~lh  114 (121)
T PHA00280         38 NPLNDALDNLRLALPKENSWNMKTPKSNTSGLKGLSWSKEREMWRGTVTAEGK--QHNFRSRDLLEVVAWIYR-TRRELH  114 (121)
T ss_pred             CCCCCcHHHhhhcCHHHHhcccCCCCCCCCCCCeeEEecCCCeEEEEEEECCE--EEEcCCCCCHHHHHHHHH-HHHHHh
Confidence            58899999999999999999999999999999999987 56999999999554  999999999999999997 778999


Q ss_pred             CCcCcC
Q 039696           82 GQEAEL   87 (210)
Q Consensus        82 G~~a~~   87 (210)
                      |+|++.
T Consensus       115 GeFa~~  120 (121)
T PHA00280        115 GQFARF  120 (121)
T ss_pred             hccccC
Confidence            998864

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.84  E-value=3.8e-21  Score=134.13  Aligned_cols=61  Identities=64%  Similarity=1.042  Sum_probs=57.6

Q ss_pred             CceeEEEECCCCcEEEEEecCCCCceeecCCCCCHHHHHHHHHHHHHHhcCCcCcCCCCCC
Q 039696           32 PTYRGVRRRSSGKWVSEIREPRKPTRIWLGTFATPEMAAIAYDVAALALKGQEAELNFPNS   92 (210)
Q Consensus        32 s~yrGVr~r~~gkW~A~I~~~~k~~ri~LGtf~t~EeAA~AyD~aa~~l~G~~a~~Nfp~s   92 (210)
                      |+||||+++++|||+|+|+++.+++++|||+|+|+|||++|||.++++++|.++.+|||++
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            6899999888899999999986677999999999999999999999999999999999985

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.81  E-value=7e-20  Score=129.23  Aligned_cols=63  Identities=60%  Similarity=1.017  Sum_probs=59.0

Q ss_pred             ceeEEEECCCCcEEEEEecCCCCceeecCCCCCHHHHHHHHHHHHHHhcCCcCcCCCCCCCCC
Q 039696           33 TYRGVRRRSSGKWVSEIREPRKPTRIWLGTFATPEMAAIAYDVAALALKGQEAELNFPNSAAS   95 (210)
Q Consensus        33 ~yrGVr~r~~gkW~A~I~~~~k~~ri~LGtf~t~EeAA~AyD~aa~~l~G~~a~~Nfp~s~~~   95 (210)
                      +|+||+++++|||+|+|+++.+++++|||+|+|+|||++|||.++++++|.++.+|||.+.+.
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~   63 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD   63 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence            599999888899999999987788999999999999999999999999999999999998653

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.11  E-value=1.1e-10  Score=79.33  Aligned_cols=52  Identities=33%  Similarity=0.451  Sum_probs=44.9

Q ss_pred             CceeEEEEC-CCCcEEEEEecCC---CCceeecCCCCCHHHHHHHHHHHHHHhcCC
Q 039696           32 PTYRGVRRR-SSGKWVSEIREPR---KPTRIWLGTFATPEMAAIAYDVAALALKGQ   83 (210)
Q Consensus        32 s~yrGVr~r-~~gkW~A~I~~~~---k~~ri~LGtf~t~EeAA~AyD~aa~~l~G~   83 (210)
                      |+|+||+++ ..++|+|+|++..   ++++++||.|.++++|+++++.+++.++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            689999887 5699999999841   147999999999999999999999999874

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

>PF13392 HNH_3: HNH endonuclease; PDB: 1U3E_M

Probab=85.18  E-value=0.032  Score=36.48  Aligned_cols=19  Identities=16%  Similarity=0.100  Sum_probs=12.2

Q ss_pred             CCCCCCCCCCCCCCCCCCC
Q 039696            3 YPKSNKSTNPSSSSGSGSG   21 (210)
Q Consensus         3 ~p~dNr~sNLR~at~~~n~   21 (210)
                      .|.||+++||+++|+++|.
T Consensus        27 ~~~~n~~~NL~~~t~~en~   45 (46)
T PF13392_consen   27 NKTDNRPENLRWVTRSENS   45 (46)
T ss_dssp             -TT---GGGEEEE-HHHHH
T ss_pred             CCCCCCHHHceECCHHHhC
Confidence            4789999999999988764

>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain

Probab=82.07  E-value=4.7  Score=26.17  Aligned_cols=38  Identities=18%  Similarity=0.182  Sum_probs=29.7

Q ss_pred             cEEEEEe--c--CCCCceeecCCCCCHHHHHHHHHHHHHHhc
Q 039696           44 KWVSEIR--E--PRKPTRIWLGTFATPEMAAIAYDVAALALK   81 (210)
Q Consensus        44 kW~A~I~--~--~~k~~ri~LGtf~t~EeAA~AyD~aa~~l~   81 (210)
                      +|...|.  .  .++.++++-+-|.|..||..+.......+.
T Consensus         1 ~w~~~v~g~~~~~Gkrk~~~k~GF~TkkeA~~~~~~~~~~~~   42 (46)
T PF14657_consen    1 TWYYRVYGYDDETGKRKQKTKRGFKTKKEAEKALAKIEAELE   42 (46)
T ss_pred             CEEEEEEEEECCCCCEEEEEcCCCCcHHHHHHHHHHHHHHHH
Confidence            5888883  3  356678999999999999999887666553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	210
2gcc_A	70	Solution Structure Of The Gcc-Box Binding Domain, N		2e-07
1gcc_A	63	Solution Nmr Structure Of The Complex Of Gcc-Box Bi		3e-07

>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, Minimized Mean Structure Length = 70

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 34 YRGVRRRSSGKWVSEIREPRK-PTRIWLGTFATPEMXXXXXXXXXXXLKGQEAELNFP 90
          YRGVR+R  GK+ +EIR+P K   R+WLGTF T E            ++G  A LNFP
Sbjct: 6  YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 63

>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding Domain Of Aterf1 And Gcc-Box Dna, Minimized Average Structure Length = 63

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 34 YRGVRRRSSGKWVSEIREPRK-PTRIWLGTFATPEMXXXXXXXXXXXLKGQEAELNFP 90
          YRGVR+R  GK+ +EIR+P K   R+WLGTF T E            ++G  A LNFP
Sbjct: 3  YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	210
1gcc_A	63	Ethylene responsive element binding factor 1; tran	5e-27

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score = 97.0 bits (242), Expect = 5e-27
 Identities = 33/59 (55%), Positives = 42/59 (71%), Gaps = 1/59 (1%)

Query: 34 YRGVRRRSSGKWVSEIREP-RKPTRIWLGTFATPEMAAIAYDVAALALKGQEAELNFPN 91
          YRGVR+R  GK+ +EIR+P +   R+WLGTF T E AA+AYD AA  ++G  A LNFP 
Sbjct: 3  YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL 61

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	210
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.91
1u3e_M	174	HNH homing endonuclease; HNH catalytic motif, heli	98.18
3jtz_A	88	Integrase; four stranded beta-sheet, DNA binding p	87.86
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	82.84
3ju0_A	108	Phage integrase; four stranded beta-sheet, DNA bin	80.56

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.91  E-value=2.4e-25  Score=156.59  Aligned_cols=61  Identities=56%  Similarity=0.944  Sum_probs=57.7

Q ss_pred             ceeEEEECCCCcEEEEEecCCC-CceeecCCCCCHHHHHHHHHHHHHHhcCCcCcCCCCCCC
Q 039696           33 TYRGVRRRSSGKWVSEIREPRK-PTRIWLGTFATPEMAAIAYDVAALALKGQEAELNFPNSA   93 (210)
Q Consensus        33 ~yrGVr~r~~gkW~A~I~~~~k-~~ri~LGtf~t~EeAA~AyD~aa~~l~G~~a~~Nfp~s~   93 (210)
                      +||||+++++|||+|+|+.+.+ ++++|||+|+|+||||+|||.|+++++|..+++|||+++
T Consensus         2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~~   63 (63)
T 1gcc_A            2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV   63 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTTC
T ss_pred             CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCcC
Confidence            6999999999999999999875 689999999999999999999999999999999999874

>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1

Probab=98.18  E-value=3.2e-09  Score=86.57  Aligned_cols=68  Identities=10%  Similarity=-0.090  Sum_probs=53.0

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeEEEECCCCcEEEEEecCCCCceeecCCCCCHHHHHHHHH
Q 039696            3 YPKSNKSTNPSSSSGSGSGSNASAGPGRHPTYRGVRRRSSGKWVSEIREPRKPTRIWLGTFATPEMAAIAYD   74 (210)
Q Consensus         3 ~p~dNr~sNLR~at~~~n~~n~~~~~~~~s~yrGVr~r~~gkW~A~I~~~~k~~ri~LGtf~t~EeAA~AyD   74 (210)
                      .+.||+++|||++|+++|..++....++. .++||.+.+.++|.+.|... +  .++||.|.|.+|||++|.
T Consensus        79 ~k~nn~~~NL~~~t~~eN~~~~~~~~~~~-~~~g~~~~~~~k~~~vi~~~-~--~~~~~~f~s~~eAa~~~G  146 (174)
T 1u3e_M           79 NKDNNLSTNLRWVTQKINVENQMSRGTLN-VSKAQQIAKIKNQKPIIVIS-P--DGIEKEYPSTKCACEELG  146 (174)
T ss_dssp             CTTCCCGGGEEEECHHHHHHHHHHHTCCC-CHHHHHHHHHHTCCCEEEEC-T--TSCEEEESCHHHHHHHHT
T ss_pred             CCCCCCHHHcEECCHHHHhhcccccCccc-ceeeeeeccCCCCceEEEEc-C--CceEEeeCCHHHHHHHHC
Confidence            47899999999999999998876554332 25677543335788999886 4  678999999999999964

>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A

Probab=87.86  E-value=0.92  Score=32.69  Aligned_cols=44  Identities=23%  Similarity=0.309  Sum_probs=33.3

Q ss_pred             EEECCCC--cEEEEEecCCCCceeecCCCC--CHHHHHHHHHHHHHHh
Q 039696           37 VRRRSSG--KWVSEIREPRKPTRIWLGTFA--TPEMAAIAYDVAALAL   80 (210)
Q Consensus        37 Vr~r~~g--kW~A~I~~~~k~~ri~LGtf~--t~EeAA~AyD~aa~~l   80 (210)
                      |+....|  .|+-+.+..+|.+++-||.|+  |.++|....+.+...+
T Consensus        28 L~V~psG~K~w~~ryr~~Gk~~~~~LG~yp~~sL~~AR~~a~~~r~~l   75 (88)
T 3jtz_A           28 LLVKPGGSRHWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKML   75 (88)
T ss_dssp             EEECTTSCEEEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEecCCCEEEEEEEEeCCeEEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence            4445555  499999988888899999997  5888887776665554

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=82.84  E-value=0.78  Score=32.78  Aligned_cols=27  Identities=15%  Similarity=0.259  Sum_probs=21.2

Q ss_pred             CCCCCceeEEEEC-CCCcEEEEEecCCC
Q 039696           28 PGRHPTYRGVRRR-SSGKWVSEIREPRK   54 (210)
Q Consensus        28 ~~~~s~yrGVr~r-~~gkW~A~I~~~~k   54 (210)
                      .+.+|+|+||++. ..+.|+|.-...++
T Consensus         2 ~~~~Sg~pGVsw~kR~~~WlA~W~e~g~   29 (77)
T 3igm_B            2 SHMSSGYPGVSWNKRMCAWLAFFYDGAS   29 (77)
T ss_dssp             --CCSSSTTEEEETTTTEEEEEEEETTE
T ss_pred             CCCCCCCCcEEeecCCceEEEEEecCCe
Confidence            3578999999988 55899999998654

>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}

Probab=80.56  E-value=2.3  Score=31.77  Aligned_cols=44  Identities=23%  Similarity=0.241  Sum_probs=32.3

Q ss_pred             EEECCCC--cEEEEEecCCCCceeecCCCC--CHHHHHHHHHHHHHHh
Q 039696           37 VRRRSSG--KWVSEIREPRKPTRIWLGTFA--TPEMAAIAYDVAALAL   80 (210)
Q Consensus        37 Vr~r~~g--kW~A~I~~~~k~~ri~LGtf~--t~EeAA~AyD~aa~~l   80 (210)
                      |+....|  .|+-+.+..+|.+++-||.|+  |..+|....+.+...+
T Consensus        28 L~V~psG~K~w~~rYr~~GK~~~~~LG~yp~~SLa~AR~~a~~~r~~l   75 (108)
T 3ju0_A           28 LLVHPNGSKYWRLSYRFEKKQRLLALGVYPAVSLADARQRRDEAKKLL   75 (108)
T ss_dssp             EEECTTSCEEEEEEEEETTEEEEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred             EEEEcCCCEEEEEEEEEcCceEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence            4445555  499999988888889999997  5777777666655544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	210
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	7e-28

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 98.2 bits (245), Expect = 7e-28
 Identities = 33/58 (56%), Positives = 42/58 (72%), Gaps = 1/58 (1%)

Query: 34 YRGVRRRSSGKWVSEIREP-RKPTRIWLGTFATPEMAAIAYDVAALALKGQEAELNFP 90
          YRGVR+R  GK+ +EIR+P +   R+WLGTF T E AA+AYD AA  ++G  A LNFP
Sbjct: 3  YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	210
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.9

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.90  E-value=5.8e-25  Score=153.09  Aligned_cols=60  Identities=55%  Similarity=0.945  Sum_probs=56.0

Q ss_pred             ceeEEEECCCCcEEEEEecCC-CCceeecCCCCCHHHHHHHHHHHHHHhcCCcCcCCCCCC
Q 039696           33 TYRGVRRRSSGKWVSEIREPR-KPTRIWLGTFATPEMAAIAYDVAALALKGQEAELNFPNS   92 (210)
Q Consensus        33 ~yrGVr~r~~gkW~A~I~~~~-k~~ri~LGtf~t~EeAA~AyD~aa~~l~G~~a~~Nfp~s   92 (210)
                      +||||++|++|||+|+|+++. +++++|||+|+|+||||+|||+|+++++|.++.+|||..
T Consensus         2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~   62 (63)
T d1gcca_           2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCcc
Confidence            599999998899999999875 468999999999999999999999999999999999975