Citrus Sinensis ID: 039887

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-
MASKSYFQFILFLLSLSNFSLKCCSLRNVDKETDFNKWALWQAESVSQQVPGAGGRVLDDKLWKAETNKVRITVCQNGTGDFKTIREAINSIPPYNTRRVILEIKPGVYREKVSIPKPLPFVTFLGNSSDPPTITGNDTASATGSDGKPLKTFQSATVAVDANYFVAINMKFENTAPHVVGSMGEQAVALRISGTKAAFYNCSFYGAQDTLYDHKGLHYFNNCFIQGSVDFIFGYGRSLYE
cccHHHHHHHHHHHHHccccccccccccccccccccccHHHccccccccccccccccccccccccccccEEEEEccccccccccHHHHHHHcccccccEEEEEEEccEEEEEEEEccccccEEEEEccccccEEEEcccccccccccccccccccEEEEEEcccEEEEccEEEEccccccccccccEEEEEEEccEEEEEccEEEcccccEEcccccEEEEccEEEEEcEEEEcccEEEEc
ccccHHHHHHHHccccHHcccccccccccccccccccccccccccHHHHHccccccHHHHHHHccccccccEEEEEccccccccHHHHHHHcccccccEEEEEEEccEEEEEEEEccccEEEEEEEcccccEEEEccccEEEccccccccccEcEEEEEEEcccEEEEEEEEEcEEEEcccHHHcccccEEEccccEEEEEEEEEcccccEEEcccEEEEEccEEEEccccEEEccEEEEc
MASKSYFQFILFLLSLSNfslkccslrnvdketdfnKWALWQAESvsqqvpgaggrvlddklwkaETNKVRITVCQNGTGDFKTIREAInsippyntrrvileikpgvyrekvsipkplpfvtflgnssdpptitgndtasatgsdgkplktfqSATVAVDANYFVAINMKfentaphvvgsMGEQAVALRISGtkaafyncsfygaqdtlydhkglhyfnncfiqGSVDFIFGYGRSLYE
MASKSYFQFILFLLSLSNFSLKCCSLRNVDKETDFNKWALWQAesvsqqvpgaggRVLDDKLWkaetnkvritvcqngtgdfktireainsippyntrrviLEIKPGVYREKVSIPKPLPFVTFLGNSSDPPTITGNDTASATGSDGKPLKTFQSATVAVDANYFVAINMKFENTAPHVVGSMGEQAVALRISGTKAAFYNCSFYGAQDTLYDHKGLHYFNNCFIQGSVDFIFGYGRSLYE
MASKSYfqfilfllslsnfslkccslRNVDKETDFNKWALWQAESVSQQVPGAGGRVLDDKLWKAETNKVRITVCQNGTGDFKTIREAINSIPPYNTRRVILEIKPGVYREKVSIPKPLPFVTFLGNSSDPPTITGNDTASATGSDGKPLKTFQSATVAVDANYFVAINMKFENTAPHVVGSMGEQAVALRISGTKAAFYNCSFYGAQDTLYDHKGLHYFNNCFIQGSVDFIFGYGRSLYE
*****YFQFILFLLSLSNFSLKCCSLRNVDKETDFNKWALWQAESVSQQVPGAGGRVLDDKLWKAETNKVRITVCQNGTGDFKTIREAINSIPPYNTRRVILEIKPGVYREKVSIPKPLPFVTFLG**************************FQSATVAVDANYFVAINMKFENTAPHVVGSMGEQAVALRISGTKAAFYNCSFYGAQDTLYDHKGLHYFNNCFIQGSVDFIFGYGRS***
******F***LFLLSLS***********************************************AETNKVRITVCQNGTGDFKTIREAINSIPPYNTRRVILEIKPGVYREKVSIPKPLPFVTFLGNSSDPPTITGNDTASATGSDGKPLKTFQSATVAVDANYFVAINMKFENTAPHVVGSMGEQAVALRISGTKAAFYNCSFYGAQDTLYDHKGLHYFNNCFIQGSVDFIFGYGRSLYE
MASKSYFQFILFLLSLSNFSLKCCSLRNVDKETDFNKWALWQAESVSQQVPGAGGRVLDDKLWKAETNKVRITVCQNGTGDFKTIREAINSIPPYNTRRVILEIKPGVYREKVSIPKPLPFVTFLGNSSDPPTITGNDTASATGSDGKPLKTFQSATVAVDANYFVAINMKFENTAPHVVGSMGEQAVALRISGTKAAFYNCSFYGAQDTLYDHKGLHYFNNCFIQGSVDFIFGYGRSLYE
*********ILFLLSLSNFSL***************KWALW*AESVSQQVPGAGGRVLDDKLWKAETNKVRITVCQNGTGDFKTIREAINSIPPYNTRRVILEIKPGVYREKVSIPKPLPFVTFLGNSSDPPTITGNDTASATGSDGKPLKTFQSATVAVDANYFVAINMKFENTAPHVVGSMGEQAVALRISGTKAAFYNCSFYGAQDTLYDHKGLHYFNNCFIQGSVDFIFGYGRSLYE
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooo
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MASKSYFQFILFLLSLSNFSLKCCSLRNVDKETDFNKWALWQAESVSQQVPGAGGRVLDDKLWKAETNKVRITVCQNGTGDFKTIREAINSIPPYNTRRVILEIKPGVYREKVSIPKPLPFVTFLGNSSDPPTITGNDTASATGSDGKPLKTFQSATVAVDANYFVAINMKFENTAPHVVGSMGEQAVALRISGTKAAFYNCSFYGAQDTLYDHKGLHYFNNCFIQGSVDFIFGYGRSLYE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query241 2.2.26 [Sep-21-2011]
Q8LPF3 362 Probable pectinesterase 6 yes no 0.751 0.5 0.489 2e-45
Q9FKF3 338 Putative pectinesterase 6 no no 0.688 0.491 0.511 7e-42
Q8VYZ3 383 Probable pectinesterase 5 no no 0.867 0.545 0.416 8e-42
Q9FM79 380 Pectinesterase QRT1 OS=Ar no no 0.705 0.447 0.476 2e-41
Q9LY18 361 Probable pectinesterase 4 no no 0.730 0.487 0.486 1e-39
D8VPP5 364 Pectinesterase 1 OS=Olea N/A no 0.730 0.483 0.470 3e-38
Q9LY17 361 Probable pectinesterase 5 no no 0.730 0.487 0.475 5e-38
B2VPR8 364 Pectinesterase 2 OS=Olea N/A no 0.730 0.483 0.470 7e-38
Q84WM7 361 Pectinesterase PPME1 OS=A no no 0.755 0.504 0.445 1e-37
Q9LY19 361 Probable pectinesterase 4 no no 0.755 0.504 0.445 6e-37
>sp|Q8LPF3|PME68_ARATH Probable pectinesterase 68 OS=Arabidopsis thaliana GN=PME68 PE=2 SV=1 Back     alignment and function desciption
 Score =  182 bits (462), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 89/182 (48%), Positives = 120/182 (65%), Gaps = 1/182 (0%)

Query: 61  KLWKAETNKVRITVCQNGTGDFKTIREAINSIPPYNTRRVILEIKPGVYREKVSIPKPLP 120
           + W   +    ITV  NG   F+++++A++SIP  N + + ++I PG YREKV +P   P
Sbjct: 50  RKWVGPSGHKVITVSLNGHAQFRSVQDAVDSIPKNNNKSITIKIAPGFYREKVVVPATKP 109

Query: 121 FVTFLGNSSDPPTITGNDTASATGSDGKPLKTFQSATVAVDANYFVAINMKFENTAPH-V 179
           ++TF G   D   I  +D AS  G++G+ L+T+Q+A+V V ANYF A N+ F NTAP  +
Sbjct: 110 YITFKGAGRDVTAIEWHDRASDLGANGQQLRTYQTASVTVYANYFTARNISFTNTAPAPL 169

Query: 180 VGSMGEQAVALRISGTKAAFYNCSFYGAQDTLYDHKGLHYFNNCFIQGSVDFIFGYGRSL 239
            G  G QAVA RISG KA F  C FYGAQDTL D  G HYF  C+I+GS+DFIFG GRS+
Sbjct: 170 PGMQGWQAVAFRISGDKAFFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSM 229

Query: 240 YE 241
           Y+
Sbjct: 230 YK 231
Acts in the modification of cell walls via demethylesterification of cell wall pectin.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 1
>sp|Q9FKF3|PME63_ARATH Putative pectinesterase 63 OS=Arabidopsis thaliana GN=PME63 PE=3 SV=2 Back     alignment and function description
>sp|Q8VYZ3|PME53_ARATH Probable pectinesterase 53 OS=Arabidopsis thaliana GN=PME53 PE=2 SV=1 Back     alignment and function description
>sp|Q9FM79|PME62_ARATH Pectinesterase QRT1 OS=Arabidopsis thaliana GN=QRT1 PE=2 SV=1 Back     alignment and function description
>sp|Q9LY18|PME49_ARATH Probable pectinesterase 49 OS=Arabidopsis thaliana GN=PME49 PE=2 SV=1 Back     alignment and function description
>sp|D8VPP5|AL11A_OLEEU Pectinesterase 1 OS=Olea europaea PE=1 SV=1 Back     alignment and function description
>sp|Q9LY17|PME50_ARATH Probable pectinesterase 50 OS=Arabidopsis thaliana GN=PME50 PE=2 SV=1 Back     alignment and function description
>sp|B2VPR8|AL11B_OLEEU Pectinesterase 2 OS=Olea europaea PE=1 SV=1 Back     alignment and function description
>sp|Q84WM7|PPME1_ARATH Pectinesterase PPME1 OS=Arabidopsis thaliana GN=PPME1 PE=1 SV=1 Back     alignment and function description
>sp|Q9LY19|PME48_ARATH Probable pectinesterase 48 OS=Arabidopsis thaliana GN=PME48 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query241
147843547 381 hypothetical protein VITISV_042494 [Viti 1.0 0.632 0.664 8e-91
359479965 398 PREDICTED: LOW QUALITY PROTEIN: probable 1.0 0.605 0.664 8e-91
449525744 369 PREDICTED: probable pectinesterase 53-li 0.900 0.588 0.669 4e-79
449436731 383 PREDICTED: probable pectinesterase 53-li 0.900 0.566 0.669 4e-79
224128246287 predicted protein [Populus trichocarpa] 0.672 0.564 0.851 5e-78
388494886 371 unknown [Medicago truncatula] 0.975 0.633 0.578 9e-75
357442165 347 Pectinesterase [Medicago truncatula] gi| 0.871 0.605 0.623 1e-72
357162089 412 PREDICTED: putative pectinesterase 63-li 0.775 0.453 0.601 4e-58
357497213 382 Pectinesterase [Medicago truncatula] gi| 0.746 0.471 0.591 2e-56
115489104 414 Os12g0563700 [Oryza sativa Japonica Grou 0.809 0.471 0.545 8e-56
>gi|147843547|emb|CAN79461.1| hypothetical protein VITISV_042494 [Vitis vinifera] gi|297744021|emb|CBI36991.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  338 bits (868), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 168/253 (66%), Positives = 198/253 (78%), Gaps = 12/253 (4%)

Query: 1   MASKSYFQFILF-LLSLSNFSLKCCSLRNVDKETDFNKWALW-----------QAESVSQ 48
           MAS +  Q I+F +   +   +   S R++D +TD+ KW  W           Q +S+++
Sbjct: 1   MASNTRLQIIIFTISLCNLSLMSSSSWRSLDTQTDYRKWVSWNVENYRKKTALQPQSINE 60

Query: 49  QVPGAGGRVLDDKLWKAETNKVRITVCQNGTGDFKTIREAINSIPPYNTRRVILEIKPGV 108
              G GG+ LD KL KAE NKV +TV Q+GT D+ TI +A+++IP YNTRRVIL IKPGV
Sbjct: 61  TPSGGGGKALDIKLSKAEMNKVTMTVSQDGTADYTTISDALHTIPLYNTRRVILVIKPGV 120

Query: 109 YREKVSIPKPLPFVTFLGNSSDPPTITGNDTASATGSDGKPLKTFQSATVAVDANYFVAI 168
           YREKV++P+ LPFVTFLG++SDPPTITGNDTAS  G +G PLKTFQSATV VDANYFVAI
Sbjct: 121 YREKVTVPRALPFVTFLGDASDPPTITGNDTASVIGRNGVPLKTFQSATVGVDANYFVAI 180

Query: 169 NMKFENTAPHVVGSMGEQAVALRISGTKAAFYNCSFYGAQDTLYDHKGLHYFNNCFIQGS 228
           N+KFENTAPHV+GS G QAVALRISGTKAAFYNCSFYG+QDTLYDH GLHYFNNCFIQGS
Sbjct: 181 NIKFENTAPHVIGSAGGQAVALRISGTKAAFYNCSFYGSQDTLYDHTGLHYFNNCFIQGS 240

Query: 229 VDFIFGYGRSLYE 241
           VDFIFGYGRSLYE
Sbjct: 241 VDFIFGYGRSLYE 253

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359479965|ref|XP_003632380.1| PREDICTED: LOW QUALITY PROTEIN: probable pectinesterase 53-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449525744|ref|XP_004169876.1| PREDICTED: probable pectinesterase 53-like, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|449436731|ref|XP_004136146.1| PREDICTED: probable pectinesterase 53-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224128246|ref|XP_002320279.1| predicted protein [Populus trichocarpa] gi|222861052|gb|EEE98594.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|388494886|gb|AFK35509.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|357442165|ref|XP_003591360.1| Pectinesterase [Medicago truncatula] gi|355480408|gb|AES61611.1| Pectinesterase [Medicago truncatula] Back     alignment and taxonomy information
>gi|357162089|ref|XP_003579301.1| PREDICTED: putative pectinesterase 63-like [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|357497213|ref|XP_003618895.1| Pectinesterase [Medicago truncatula] gi|355493910|gb|AES75113.1| Pectinesterase [Medicago truncatula] Back     alignment and taxonomy information
>gi|115489104|ref|NP_001067039.1| Os12g0563700 [Oryza sativa Japonica Group] gi|77556168|gb|ABA98964.1| Pectinesterase family protein, expressed [Oryza sativa Japonica Group] gi|113649546|dbj|BAF30058.1| Os12g0563700 [Oryza sativa Japonica Group] gi|215697688|dbj|BAG91682.1| unnamed protein product [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query241
TAIR|locus:2169023 362 PME5 "pectin methylesterase 5" 0.742 0.494 0.494 1.3e-43
TAIR|locus:2183214 383 AT5G19730 [Arabidopsis thalian 0.763 0.480 0.468 9.6e-41
TAIR|locus:2151586 338 AT5G61680 [Arabidopsis thalian 0.663 0.473 0.523 3.3e-40
TAIR|locus:2162102 380 QRT1 "QUARTET 1" [Arabidopsis 0.726 0.460 0.471 6.8e-40
TAIR|locus:2183349 361 AT5G07420 [Arabidopsis thalian 0.726 0.484 0.494 2.6e-38
TAIR|locus:2183364 361 AT5G07430 [Arabidopsis thalian 0.726 0.484 0.489 3.9e-37
TAIR|locus:2196805 361 PPME1 [Arabidopsis thaliana (t 0.755 0.504 0.445 4.9e-37
TAIR|locus:2183334 361 AT5G07410 [Arabidopsis thalian 0.755 0.504 0.445 2.1e-36
TAIR|locus:2207245 393 AT1G05310 [Arabidopsis thalian 0.676 0.414 0.465 1.7e-34
TAIR|locus:2094652 317 PME31 "pectin methylesterase 3 0.709 0.539 0.441 2.5e-33
TAIR|locus:2169023 PME5 "pectin methylesterase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 460 (167.0 bits), Expect = 1.3e-43, P = 1.3e-43
 Identities = 89/180 (49%), Positives = 119/180 (66%)

Query:    63 WKAETNKVRITVCQNGTGDFKTIREAINSIPPYNTRRVILEIKPGVYREKVSIPKPLPFV 122
             W   +    ITV  NG   F+++++A++SIP  N + + ++I PG YREKV +P   P++
Sbjct:    52 WVGPSGHKVITVSLNGHAQFRSVQDAVDSIPKNNNKSITIKIAPGFYREKVVVPATKPYI 111

Query:   123 TFLGNSSDPPTITGNDTASATGSDGKPLKTFQSATVAVDANYFVAINMKFENTAPHVV-G 181
             TF G   D   I  +D AS  G++G+ L+T+Q+A+V V ANYF A N+ F NTAP  + G
Sbjct:   112 TFKGAGRDVTAIEWHDRASDLGANGQQLRTYQTASVTVYANYFTARNISFTNTAPAPLPG 171

Query:   182 SMGEQAVALRISGTKAAFYNCSFYGAQDTLYDHKGLHYFNNCFIQGSVDFIFGYGRSLYE 241
               G QAVA RISG KA F  C FYGAQDTL D  G HYF  C+I+GS+DFIFG GRS+Y+
Sbjct:   172 MQGWQAVAFRISGDKAFFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYK 231
GO:0005576 "extracellular region" evidence=ISM
GO:0005618 "cell wall" evidence=IEA
GO:0009505 "plant-type cell wall" evidence=ISS
GO:0030599 "pectinesterase activity" evidence=IEA;ISS
GO:0042545 "cell wall modification" evidence=IEA
GO:0016572 "histone phosphorylation" evidence=RCA
TAIR|locus:2183214 AT5G19730 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2151586 AT5G61680 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2162102 QRT1 "QUARTET 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2183349 AT5G07420 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2183364 AT5G07430 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2196805 PPME1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2183334 AT5G07410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2207245 AT1G05310 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2094652 PME31 "pectin methylesterase 31" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00028162001
RecName- Full=Pectinesterase; EC=3.1.1.11; (380 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query241
PLN02665 366 PLN02665, PLN02665, pectinesterase family protein 4e-75
PLN02682 369 PLN02682, PLN02682, pectinesterase family protein 2e-72
PLN02634 359 PLN02634, PLN02634, probable pectinesterase 5e-65
PLN02671 359 PLN02671, PLN02671, pectinesterase 1e-58
pfam01095 298 pfam01095, Pectinesterase, Pectinesterase 8e-55
PLN02304 379 PLN02304, PLN02304, probable pectinesterase 4e-51
PLN02432 293 PLN02432, PLN02432, putative pectinesterase 1e-48
PLN02773 317 PLN02773, PLN02773, pectinesterase 4e-47
PLN02480 343 PLN02480, PLN02480, Probable pectinesterase 2e-45
PLN02990 572 PLN02990, PLN02990, Probable pectinesterase/pectin 4e-43
PLN02497 331 PLN02497, PLN02497, probable pectinesterase 1e-40
PLN02217 670 PLN02217, PLN02217, probable pectinesterase/pectin 5e-37
PLN02506 537 PLN02506, PLN02506, putative pectinesterase/pectin 1e-36
PLN02488 509 PLN02488, PLN02488, probable pectinesterase/pectin 4e-36
PLN02708 553 PLN02708, PLN02708, Probable pectinesterase/pectin 1e-35
PLN02314 586 PLN02314, PLN02314, pectinesterase 1e-35
PLN02745 596 PLN02745, PLN02745, Putative pectinesterase/pectin 1e-35
PLN02916 502 PLN02916, PLN02916, pectinesterase family protein 2e-35
PLN02313 587 PLN02313, PLN02313, Pectinesterase/pectinesterase 8e-35
PLN02416 541 PLN02416, PLN02416, probable pectinesterase/pectin 9e-35
PLN02713 566 PLN02713, PLN02713, Probable pectinesterase/pectin 4e-34
PLN02301 548 PLN02301, PLN02301, pectinesterase/pectinesterase 6e-34
PLN02201 520 PLN02201, PLN02201, probable pectinesterase/pectin 2e-33
PLN02197 588 PLN02197, PLN02197, pectinesterase 3e-33
PLN02933 530 PLN02933, PLN02933, Probable pectinesterase/pectin 3e-32
PLN02468 565 PLN02468, PLN02468, putative pectinesterase/pectin 8e-31
PLN02484 587 PLN02484, PLN02484, probable pectinesterase/pectin 2e-29
PLN02176 340 PLN02176, PLN02176, putative pectinesterase 6e-29
COG4677 405 COG4677, PemB, Pectin methylesterase [Carbohydrate 7e-28
PLN03043 538 PLN03043, PLN03043, Probable pectinesterase/pectin 7e-28
PLN02170 529 PLN02170, PLN02170, probable pectinesterase/pectin 1e-23
PRK10531 422 PRK10531, PRK10531, acyl-CoA thioesterase; Provisi 2e-21
PLN02995 539 PLN02995, PLN02995, Probable pectinesterase/pectin 3e-21
PLN02698 497 PLN02698, PLN02698, Probable pectinesterase/pectin 2e-18
>gnl|CDD|215357 PLN02665, PLN02665, pectinesterase family protein Back     alignment and domain information 
 Score =  231 bits (591), Expect = 4e-75
 Identities = 94/184 (51%), Positives = 123/184 (66%), Gaps = 8/184 (4%)

Query: 58  LDDKLWKAETNKVRITVCQNGTGDFKTIREAINSIPPYNTRRVILEIKPGVYREKVSIPK 117
           LD  L  AE     I V ++G+GDFKTI +AI SIP  NT+RVI++I PG Y EK++I +
Sbjct: 56  LDPALEAAEAAPRIIKVRKDGSGDFKTITDAIKSIPAGNTQRVIIDIGPGEYNEKITIDR 115

Query: 118 PLPFVTFLGNSSDPPTITGNDTASATGSDGKPLKTFQSATVAVDANYFVAINMKFENTAP 177
             PFVT  G+    PT+T + TA+  G       T  SAT+ V+++YF+A N+  +N+AP
Sbjct: 116 SKPFVTLYGSPGAMPTLTFDGTAAKYG-------TVYSATLIVESDYFMAANIIIKNSAP 168

Query: 178 HV-VGSMGEQAVALRISGTKAAFYNCSFYGAQDTLYDHKGLHYFNNCFIQGSVDFIFGYG 236
                  G QAVA+RISG KAAFYNC F G QDTL D KG H+F +C+I+G+VDFIFG G
Sbjct: 169 RPDGKRKGAQAVAMRISGDKAAFYNCRFIGFQDTLCDDKGRHFFKDCYIEGTVDFIFGSG 228

Query: 237 RSLY 240
           +SLY
Sbjct: 229 KSLY 232

Length = 366
>gnl|CDD|215367 PLN02682, PLN02682, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|215340 PLN02634, PLN02634, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178276 PLN02671, PLN02671, pectinesterase Back     alignment and domain information
>gnl|CDD|216297 pfam01095, Pectinesterase, Pectinesterase Back     alignment and domain information
>gnl|CDD|215173 PLN02304, PLN02304, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178051 PLN02432, PLN02432, putative pectinesterase Back     alignment and domain information
>gnl|CDD|178372 PLN02773, PLN02773, pectinesterase Back     alignment and domain information
>gnl|CDD|178098 PLN02480, PLN02480, Probable pectinesterase Back     alignment and domain information
>gnl|CDD|215535 PLN02990, PLN02990, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178113 PLN02497, PLN02497, probable pectinesterase Back     alignment and domain information
>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215280 PLN02506, PLN02506, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178106 PLN02488, PLN02488, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215379 PLN02708, PLN02708, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215179 PLN02314, PLN02314, pectinesterase Back     alignment and domain information
>gnl|CDD|178346 PLN02745, PLN02745, Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178504 PLN02916, PLN02916, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|177947 PLN02313, PLN02313, Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178037 PLN02416, PLN02416, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215383 PLN02713, PLN02713, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215170 PLN02301, PLN02301, pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177852 PLN02201, PLN02201, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177848 PLN02197, PLN02197, pectinesterase Back     alignment and domain information
>gnl|CDD|178521 PLN02933, PLN02933, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178087 PLN02468, PLN02468, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178102 PLN02484, PLN02484, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215117 PLN02176, PLN02176, putative pectinesterase Back     alignment and domain information
>gnl|CDD|227022 COG4677, PemB, Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|178606 PLN03043, PLN03043, Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>gnl|CDD|215114 PLN02170, PLN02170, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|236709 PRK10531, PRK10531, acyl-CoA thioesterase; Provisional Back     alignment and domain information
>gnl|CDD|178574 PLN02995, PLN02995, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178301 PLN02698, PLN02698, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 241
PLN02665 366 pectinesterase family protein 100.0
PLN02488 509 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02682 369 pectinesterase family protein 100.0
PLN02933 530 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02990 572 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02484 587 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02201 520 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02301 548 pectinesterase/pectinesterase inhibitor 100.0
PLN02995 539 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02170 529 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02416 541 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02197 588 pectinesterase 100.0
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02468 565 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02506 537 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02314 586 pectinesterase 100.0
PLN02671 359 pectinesterase 100.0
PLN02745 596 Putative pectinesterase/pectinesterase inhibitor 100.0
PLN02713 566 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02313 587 Pectinesterase/pectinesterase inhibitor 100.0
PLN03043 538 Probable pectinesterase/pectinesterase inhibitor; 100.0
PLN02916 502 pectinesterase family protein 100.0
PLN02708 553 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02634 359 probable pectinesterase 100.0
PLN02304 379 probable pectinesterase 100.0
PLN02176 340 putative pectinesterase 100.0
PLN02497 331 probable pectinesterase 100.0
PLN02773 317 pectinesterase 100.0
PLN02432 293 putative pectinesterase 100.0
PRK10531 422 acyl-CoA thioesterase; Provisional 100.0
PLN02480 343 Probable pectinesterase 100.0
PF01095 298 Pectinesterase: Pectinesterase; InterPro: IPR00007 100.0
PLN02698 497 Probable pectinesterase/pectinesterase inhibitor 100.0
COG4677 405 PemB Pectin methylesterase [Carbohydrate transport 100.0
TIGR03805 314 beta_helix_1 parallel beta-helix repeat-containing 99.42
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 98.93
PF14592 425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.73
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 98.64
COG3420 408 NosD Nitrous oxidase accessory protein [Inorganic 98.03
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 97.8
PF01696 386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 96.16
PLN02480 343 Probable pectinesterase 95.11
PLN02671 359 pectinesterase 94.91
PLN02176 340 putative pectinesterase 93.81
COG3866 345 PelB Pectate lyase [Carbohydrate transport and met 93.76
smart00656190 Amb_all Amb_all domain. 93.68
PLN03010 409 polygalacturonase 93.32
PLN02773 317 pectinesterase 93.05
PLN02188 404 polygalacturonase/glycoside hydrolase family prote 93.01
PLN02432 293 putative pectinesterase 92.34
PLN02793 443 Probable polygalacturonase 92.3
PLN02634 359 probable pectinesterase 91.8
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 91.5
PLN02304 379 probable pectinesterase 90.95
PF01095 298 Pectinesterase: Pectinesterase; InterPro: IPR00007 90.91
PLN02995 539 Probable pectinesterase/pectinesterase inhibitor 90.56
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 90.55
PLN02497 331 probable pectinesterase 90.18
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 90.15
PLN02665 366 pectinesterase family protein 89.83
PLN02682 369 pectinesterase family protein 89.46
PLN02916 502 pectinesterase family protein 89.32
PLN02201 520 probable pectinesterase/pectinesterase inhibitor 89.25
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 89.18
PLN02170 529 probable pectinesterase/pectinesterase inhibitor 89.17
PLN02708 553 Probable pectinesterase/pectinesterase inhibitor 89.0
PLN02506 537 putative pectinesterase/pectinesterase inhibitor 88.97
PLN02990 572 Probable pectinesterase/pectinesterase inhibitor 88.58
PLN02218 431 polygalacturonase ADPG 88.57
PLN02301 548 pectinesterase/pectinesterase inhibitor 88.06
PLN02484 587 probable pectinesterase/pectinesterase inhibitor 87.77
PLN02698 497 Probable pectinesterase/pectinesterase inhibitor 87.4
PLN02314 586 pectinesterase 87.38
PLN02713 566 Probable pectinesterase/pectinesterase inhibitor 87.37
PLN02416 541 probable pectinesterase/pectinesterase inhibitor 87.1
PLN02468 565 putative pectinesterase/pectinesterase inhibitor 86.99
PLN02745 596 Putative pectinesterase/pectinesterase inhibitor 86.63
PLN02488 509 probable pectinesterase/pectinesterase inhibitor 86.58
PLN02197 588 pectinesterase 86.49
PLN02155 394 polygalacturonase 86.3
PLN02933 530 Probable pectinesterase/pectinesterase inhibitor 85.91
PLN02313 587 Pectinesterase/pectinesterase inhibitor 85.87
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 85.67
PLN03043 538 Probable pectinesterase/pectinesterase inhibitor; 84.91
PRK10531 422 acyl-CoA thioesterase; Provisional 83.99
>PLN02665 pectinesterase family protein Back     alignment and domain information 
Probab=100.00  E-value=3.2e-64  Score=465.53  Aligned_cols=229  Identities=43%  Similarity=0.671  Sum_probs=201.4

Q ss_pred             CCccchHHHHHHHHHhhc--cccccCCcccccCccccchhhhhcccceecccCCCCCcccchhhhhhccCCcEEEEcCCC
Q 039887            1 MASKSYFQFILFLLSLSN--FSLKCCSLRNVDKETDFNKWALWQAESVSQQVPGAGGRVLDDKLWKAETNKVRITVCQNG   78 (241)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ivV~~dG   78 (241)
                      |+....++|++++|+++.  .+..++..+.+.....++.|+.....++     ..++..+++.+.++++.+.+++|++||
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~V~~dG   76 (366)
T PLN02665          2 MTSIAIIACAIAALVVLVSPTVSSDDTTPIPADKSQLNQWFQANVKPY-----AQRKGTLDPALEAAEAAPRIIKVRKDG   76 (366)
T ss_pred             ceehhHHHHHHHHHHHHHhhhcccccccccccchhHHHHHHHHHhhhh-----hccccccCcchhccccCceEEEEcCCC
Confidence            667788888887777443  3333367788888889999998766554     335567888887777677999999999


Q ss_pred             CCCCchHHHHHHhCCCCCCceEEEEEcCceEeeeEEecCCCCcEEEecCCCCCcEEEeccCCCCCCCCCCCCCccCcEEE
Q 039887           79 TGDFKTIREAINSIPPYNTRRVILEIKPGVYREKVSIPKPLPFVTFLGNSSDPPTITGNDTASATGSDGKPLKTFQSATV  158 (241)
Q Consensus        79 sg~f~TIq~Ai~aap~~~~~r~vI~I~~G~Y~E~V~I~k~k~~ItL~G~g~~~tiIt~~~~~~~~~~~G~~~~t~~sat~  158 (241)
                      +|+|+|||+||+++|+++++|++|+|+||+|+|+|+|++.||+|||+|++.++|+|+|++++..       +||+.||||
T Consensus        77 ~Gdf~TIq~AIdaiP~~~~~r~vI~Ik~GvY~EkV~Ip~~kp~Itl~G~~~~~tiIt~~~~a~~-------~gT~~SaTv  149 (366)
T PLN02665         77 SGDFKTITDAIKSIPAGNTQRVIIDIGPGEYNEKITIDRSKPFVTLYGSPGAMPTLTFDGTAAK-------YGTVYSATL  149 (366)
T ss_pred             CCCccCHHHHHhhCcccCCceEEEEEeCcEEEEEEEecCCCCEEEEEecCCCCCEEEECCccCC-------CCCcceEEE
Confidence            9999999999999999999999999999999999999999999999999999999999987532       679999999


Q ss_pred             EEecCceEEEceEEeecCCCCCC-CcccceeeeeeeCCcEEEEeeEEEeeceeEeeCCCcEEEeccEEEccceeEecCcc
Q 039887          159 AVDANYFVAINMKFENTAPHVVG-SMGEQAVALRISGTKAAFYNCSFYGAQDTLYDHKGLHYFNNCFIQGSVDFIFGYGR  237 (241)
Q Consensus       159 ~V~a~~f~~~nitf~Nta~~~~~-~~~~QAvAlrv~gd~~~f~nC~f~g~QDTL~~~~gr~~~~~C~I~G~vDfIfG~g~  237 (241)
                      .|++++|+++||||+|+++.+.+ ..++||||||+.|||++||||+|+|||||||++.|||||+||+|+|+||||||+|+
T Consensus       150 ~v~a~~F~a~nitf~Nta~~~~~~~~g~QAVAl~v~gDka~f~~C~f~G~QDTL~~~~gr~yf~~CyIeG~VDFIFG~g~  229 (366)
T PLN02665        150 IVESDYFMAANIIIKNSAPRPDGKRKGAQAVAMRISGDKAAFYNCRFIGFQDTLCDDKGRHFFKDCYIEGTVDFIFGSGK  229 (366)
T ss_pred             EEECCCeEEEeeEEEeCCCCcCCCCCCcceEEEEEcCCcEEEEcceeccccceeEeCCCCEEEEeeEEeeccceeccccc
Confidence            99999999999999999985443 24579999999999999999999999999999999999999999999999999999


Q ss_pred             eEeC
Q 039887          238 SLYE  241 (241)
Q Consensus       238 a~f~  241 (241)
                      ++||
T Consensus       230 a~fe  233 (366)
T PLN02665        230 SLYL  233 (366)
T ss_pred             eeeE
Confidence            9997

>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query241
1gq8_A 319 Pectin Methylesterase From Carrot Length = 319 3e-29
1xg2_A 317 Crystal Structure Of The Complex Between Pectin Met 1e-19
2ntb_A 342 Crystal Structure Of Pectin Methylesterase In Compl 9e-15
1qjv_A 342 Pectin Methylesterase Pema From Erwinia Chrysanthem 1e-14
2nsp_A 342 Crystal Structure Of Pectin Methylesterase D178a Mu 9e-14
3uw0_A 364 Pectin Methylesterase From Yersinia Enterocolitica 2e-13
>pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot Length = 319 Back     alignment and structure 
Iteration: 1

 Score =  125 bits (313), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 70/163 (42%), Positives = 93/163 (57%), Gaps = 10/163 (6%)
Query: 72  ITVCQNGTGDFKTIREAINSIPPYNTRRVILEIKPGVYREKVSIPKPLPFVTFLGNSSDP 131
           + V  +G+GD+KT+ EA+ + P  +  R ++ IK GVYRE V +PK    + FLG+    
Sbjct: 9   VVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTS 68
Query: 132 PTITGNDTASATGSDGKPLKTFQSATVAVDANYFVAINMKFENTAPHVVGSMGEQAVALR 191
             IT    AS    DG    TF SATVA     F+A ++ F+NTA    G+   QAVALR
Sbjct: 69  TIIT----ASKNVQDGS--TTFNSATVAAVGAGFLARDITFQNTA----GAAKHQAVALR 118
Query: 192 ISGTKAAFYNCSFYGAQDTLYDHKGLHYFNNCFIQGSVDFIFG 234
           +    +AFY C     QD+LY H    +F NCFI G+VDFIFG
Sbjct: 119 VGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFG 161
>pdb|1XG2|A Chain A, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein Length = 317 Back     alignment and structure
>pdb|2NTB|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With Hexasaccharide V Length = 342 Back     alignment and structure
>pdb|1QJV|A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi Length = 342 Back     alignment and structure
>pdb|2NSP|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In Complex With Hexasaccharide I Length = 342 Back     alignment and structure
>pdb|3UW0|A Chain A, Pectin Methylesterase From Yersinia Enterocolitica Length = 364 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query241
1gq8_A 319 Pectinesterase; hydrolase, carboxylic ester hydrol 3e-77
1xg2_A 317 Pectinesterase 1; protein-protein complex, beta he 4e-77
3uw0_A 364 Pectinesterase; right-handed beta-helix, carbohydr 6e-76
2nsp_A 342 Pectinesterase A; michaelis complex, hydrolase; HE 7e-75
3grh_A 422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 1e-64
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Length = 319 Back     alignment and structure
 Score =  234 bits (600), Expect = 3e-77
 Identities = 66/170 (38%), Positives = 93/170 (54%), Gaps = 10/170 (5%)

Query: 72  ITVCQNGTGDFKTIREAINSIPPYNTRRVILEIKPGVYREKVSIPKPLPFVTFLGNSSDP 131
           + V  +G+GD+KT+ EA+ + P  +  R ++ IK GVYRE V +PK    + FLG+    
Sbjct: 9   VVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTS 68

Query: 132 PTITGNDTASATGSDGKPLKTFQSATVAVDANYFVAINMKFENTAPHVVGSMGEQAVALR 191
             IT +       +      TF SATVA     F+A ++ F+NTA    G+   QAVALR
Sbjct: 69  TIITASKNVQDGST------TFNSATVAAVGAGFLARDITFQNTA----GAAKHQAVALR 118

Query: 192 ISGTKAAFYNCSFYGAQDTLYDHKGLHYFNNCFIQGSVDFIFGYGRSLYE 241
           +    +AFY C     QD+LY H    +F NCFI G+VDFIFG    + +
Sbjct: 119 VGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQ 168
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Length = 317 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Length = 364 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Length = 342 Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Length = 422 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query241
3grh_A 422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 100.0
3uw0_A 364 Pectinesterase; right-handed beta-helix, carbohydr 100.0
1xg2_A 317 Pectinesterase 1; protein-protein complex, beta he 100.0
1gq8_A 319 Pectinesterase; hydrolase, carboxylic ester hydrol 100.0
2nsp_A 342 Pectinesterase A; michaelis complex, hydrolase; HE 100.0
1ru4_A 400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 99.67
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 99.57
2inu_A 410 Insulin fructotransferase; right-handed parallel b 98.9
2pyg_A 377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 97.84
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 97.43
1qcx_A 359 Pectin lyase B; beta-helix protein, plant cell WAL 97.32
1idk_A 359 Pectin lyase A; signal, glycoprotein, multigene fa 97.06
1pxz_A 346 Major pollen allergen JUN A 1; parallel beta-helix 97.01
1air_A 353 Pectate lyase C, PELC; pectate cleavage, pectinoly 96.48
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 96.43
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 96.39
1bhe_A 376 PEHA, polygalacturonase; family 28 glycosyl hydrol 96.39
1rmg_A 422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 96.07
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 95.75
3zsc_A 340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 95.73
1pcl_A 355 Pectate lyase E; lyase (acting on polysaccharides) 95.65
1nhc_A 336 Polygalacturonase I; beta-helix, hydrolase; HET: M 95.49
1hg8_A 349 Endopolygalacturonase; hydrolase, pectin degradati 95.46
2uvf_A 608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 95.43
2iq7_A 339 Endopolygalacturonase; parallel beta helix, hydrol 95.35
2qy1_A 330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 95.25
3vmv_A 326 Pectate lyase; polysaccharide lyase family 1, beta 95.12
1ia5_A 339 Polygalacturonase; glycosylhydrolase, hydrolase; H 94.33
1pe9_A 361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 94.28
1gq8_A 319 Pectinesterase; hydrolase, carboxylic ester hydrol 93.55
2o04_A 399 Pectate lyase, PL; hexasaccharide compound II, cal 93.53
1vbl_A 416 Pectate lyase 47; PL 47, thermostable, bacillus su 93.43
1xg2_A 317 Pectinesterase 1; protein-protein complex, beta he 93.2
1czf_A 362 Polygalacturonase II; beta helix, hydrolase; HET: 93.15
2nsp_A 342 Pectinesterase A; michaelis complex, hydrolase; HE 93.03
3jur_A 448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 92.02
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 90.7
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 90.19
3uw0_A 364 Pectinesterase; right-handed beta-helix, carbohydr 87.23
3grh_A 422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 81.7
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
Probab=100.00  E-value=1.5e-53  Score=398.74  Aligned_cols=185  Identities=22%  Similarity=0.325  Sum_probs=156.9

Q ss_pred             cccchhhhhhccCCcEEEEcCCCCC--CCchHHHHHHhCC-CCCCceEEEEEcCceEeeeEEecCCCCcEEEecCCCCCc
Q 039887           56 RVLDDKLWKAETNKVRITVCQNGTG--DFKTIREAINSIP-PYNTRRVILEIKPGVYREKVSIPKPLPFVTFLGNSSDPP  132 (241)
Q Consensus        56 ~~~~~~l~~~~~~~~~ivV~~dGsg--~f~TIq~Ai~aap-~~~~~r~vI~I~~G~Y~E~V~I~k~k~~ItL~G~g~~~t  132 (241)
                      ..++|..-.+ ..+++++|++||+|  +|+|||+||+++| .++..|++|+|+||+|+|+|+|++.|++|||+|+|.+++
T Consensus        62 ~~w~P~~~~~-~~~~~ivVa~dGsG~~~f~TIqeAVdaap~~~~~~r~vI~Ik~GvY~E~V~Ip~~K~~ItL~G~G~~~t  140 (422)
T 3grh_A           62 AAWNPSPITL-PAQPDFVVGPAGTQGVTHTTIQAAVDAAIIKRTNKRQYIAVMPGEYQGTVYVPAAPGGITLYGTGEKPI  140 (422)
T ss_dssp             CCCCCCCCCC-CSSCSEEECSTTCTTCCBSSHHHHHHHHHTTCCSSCEEEEECSEEEESCEEECCCSSCEEEEECSSSGG
T ss_pred             CCcCCCccCC-CCCccEEEeCCCCCCcCcCCHHHHHHhchhcCCCccEEEEEeCCeEeeeEEecCCCCcEEEEeccCCCc
Confidence            3566654322 45689999999998  9999999999996 567889999999999999999999999999999999988


Q ss_pred             EEEeccCC--C--------------C--C------------CCCCCCCCccCcEEEEEecCceEEEceEEeecCCCCCCC
Q 039887          133 TITGNDTA--S--------------A--T------------GSDGKPLKTFQSATVAVDANYFVAINMKFENTAPHVVGS  182 (241)
Q Consensus       133 iIt~~~~~--~--------------~--~------------~~~G~~~~t~~sat~~V~a~~f~~~nitf~Nta~~~~~~  182 (241)
                      +|+...+.  .              .  .            ...+..++|++||||.|.+++|+++||||+|+++...+.
T Consensus       141 ~Iti~~~~~~~~~~~d~~~~~n~~G~~~~G~~aw~tf~~~~~~~sat~gT~~SAT~~V~g~~F~a~niTf~Ntag~~~~~  220 (422)
T 3grh_A          141 DVKIGLSLDGGMSPADWRHDVNPRGKYMPGKPAWYMYDSCQSKRSDSIGVLCSAVFWSQNNGLQLQNLTIENTLGDSVDA  220 (422)
T ss_dssp             GEEEEECCCTTSCHHHHHHHHCGGGSSCTTSTTHHHHHHHHTCCSSSCCGGGCCSEEECCTTCEEEEEEEEETTGGGSCS
T ss_pred             eEEEeecccccccccccccccccccccccCccccccccccccccccceeccceEEEEEECCCEEEEeeEEEeCCCCCCCC
Confidence            77653210  0              0  0            012235789999999999999999999999999964323


Q ss_pred             cccceeeeeeeCCcEEEEeeEEEeeceeEee------------CCCcEEEeccEEEccceeEecCcceEeC
Q 039887          183 MGEQAVALRISGTKAAFYNCSFYGAQDTLYD------------HKGLHYFNNCFIQGSVDFIFGYGRSLYE  241 (241)
Q Consensus       183 ~~~QAvAlrv~gd~~~f~nC~f~g~QDTL~~------------~~gr~~~~~C~I~G~vDfIfG~g~a~f~  241 (241)
                      .++||||||+.+|+++||||+|+|||||||+            +.|||||++|+|+|+||||||+|+||||
T Consensus       221 ~~~QAVAL~v~gDr~~fy~C~f~G~QDTLy~~~~~~~~~~~~d~~gRqyy~~CyIeGtVDFIFG~a~AvFe  291 (422)
T 3grh_A          221 GNHPAVALRTDGDQVQINNVNILGRQNTFFVTNSGVQNRLETNRQPRTLVTNSYIEGDVDIVSGRGAVVFD  291 (422)
T ss_dssp             SCCCCCSEEECCSSEEEEEEEEECSTTCEEECCCCTTCSCCSSCCCEEEEESCEEEESEEEEEESSEEEEE
T ss_pred             CCCceEEEEecCCcEEEEeeEEEeecceeeeccccccccccccccccEEEEecEEeccccEEccCceEEEE
Confidence            4689999999999999999999999999997            5799999999999999999999999996
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 241
d1gq8a_ 319 b.80.1.5 (A:) Pectin methylesterase PemA {Carrot ( 9e-67
d1qjva_ 342 b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia 3e-56
d1ru4a_ 400 b.80.1.9 (A:) Pectate transeliminase {Erwinia chry 1e-04
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Length = 319 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

 Score =  207 bits (527), Expect = 9e-67
 Identities = 67/178 (37%), Positives = 96/178 (53%), Gaps = 10/178 (5%)

Query: 64  KAETNKVRITVCQNGTGDFKTIREAINSIPPYNTRRVILEIKPGVYREKVSIPKPLPFVT 123
           ++ T    + V  +G+GD+KT+ EA+ + P  +  R ++ IK GVYRE V +PK    + 
Sbjct: 1   ESSTVGPNVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIM 60

Query: 124 FLGNSSDPPTITGNDTASATGSDGKPLKTFQSATVAVDANYFVAINMKFENTAPHVVGSM 183
           FLG+      IT +       +      TF SATVA     F+A ++ F+NTA    G+ 
Sbjct: 61  FLGDGRTSTIITASKNVQDGST------TFNSATVAAVGAGFLARDITFQNTA----GAA 110

Query: 184 GEQAVALRISGTKAAFYNCSFYGAQDTLYDHKGLHYFNNCFIQGSVDFIFGYGRSLYE 241
             QAVALR+    +AFY C     QD+LY H    +F NCFI G+VDFIFG    + +
Sbjct: 111 KHQAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQ 168
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Length = 342 Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Length = 400 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query241
d1gq8a_ 319 Pectin methylesterase PemA {Carrot (Daucus carota) 100.0
d1qjva_ 342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 100.0
d1ru4a_ 400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 99.27
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 99.06
d1bhea_ 376 Polygalacturonase {Erwinia carotovora, subsp. caro 97.9
d1idka_ 359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 96.44
d1pxza_ 346 Major pollen allergen Jun a 1 {Ozark white cedar ( 95.69
d1qcxa_ 359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 95.63
d1rmga_ 422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 95.57
d1pe9a_ 361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 94.89
d1bn8a_ 399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 94.8
d1pcla_ 355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 94.35
d1hg8a_ 349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 94.08
d1nhca_ 336 Polygalacturonase {Fungus (Aspergillus niger), end 92.03
d1gq8a_ 319 Pectin methylesterase PemA {Carrot (Daucus carota) 91.06
d1o88a_ 353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 89.61
d1qjva_ 342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 86.94
d1ogmx2 373 Dextranase, catalytic domain {Penicillium miniolut 86.71
d1czfa_ 335 Polygalacturonase {Fungus (Aspergillus niger), end 82.31
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

Probab=100.00  E-value=2.5e-57  Score=411.04  Aligned_cols=164  Identities=40%  Similarity=0.690  Sum_probs=155.8

Q ss_pred             CCcEEEEcCCCCCCCchHHHHHHhCCCCCCceEEEEEcCceEeeeEEecCCCCcEEEecCCCCCcEEEeccCCCCCCCCC
Q 039887           68 NKVRITVCQNGTGDFKTIREAINSIPPYNTRRVILEIKPGVYREKVSIPKPLPFVTFLGNSSDPPTITGNDTASATGSDG  147 (241)
Q Consensus        68 ~~~~ivV~~dGsg~f~TIq~Ai~aap~~~~~r~vI~I~~G~Y~E~V~I~k~k~~ItL~G~g~~~tiIt~~~~~~~~~~~G  147 (241)
                      .+++++|++||+|||+|||+||+++|++++.|++|+|+||+|+|+|+|++.||||||+|+|++.|+|+++.++.+    |
T Consensus         5 ~~p~i~V~~dGsGdf~TIq~AIda~p~~~~~~~~I~I~~G~Y~E~V~I~~~k~~itl~G~g~~~tiIt~~~~~~~----~   80 (319)
T d1gq8a_           5 VGPNVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTIITASKNVQD----G   80 (319)
T ss_dssp             SCCSEEECTTSCSSBSSHHHHHHHSCSSCSSCEEEEECSEEEECCEEECTTCCSEEEEESCTTTEEEEECCCTTT----T
T ss_pred             CCCCEEECCCCCCCccCHHHHHhhCccCCCCcEEEEEcCceEEEEEEECCCCCeEEEEEcCCCCcEEEecccccC----C
Confidence            467899999999999999999999999999999999999999999999999999999999999999999887653    3


Q ss_pred             CCCCccCcEEEEEecCceEEEceEEeecCCCCCCCcccceeeeeeeCCcEEEEeeEEEeeceeEeeCCCcEEEeccEEEc
Q 039887          148 KPLKTFQSATVAVDANYFVAINMKFENTAPHVVGSMGEQAVALRISGTKAAFYNCSFYGAQDTLYDHKGLHYFNNCFIQG  227 (241)
Q Consensus       148 ~~~~t~~sat~~V~a~~f~~~nitf~Nta~~~~~~~~~QAvAlrv~gd~~~f~nC~f~g~QDTL~~~~gr~~~~~C~I~G  227 (241)
                        .+|+.++||.|.+++|+++||+|+|+++..    ++||||||+.+|+++||||+|+|+|||||++.|||||++|+|+|
T Consensus        81 --~~t~~sat~~v~~~~f~a~nitf~Nt~g~~----~~QAvAl~v~gd~~~fy~c~f~G~QDTL~~~~gr~yf~~c~IeG  154 (319)
T d1gq8a_          81 --STTFNSATVAAVGAGFLARDITFQNTAGAA----KHQAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAG  154 (319)
T ss_dssp             --CCTGGGCSEEECSTTCEEEEEEEEECCCGG----GCCCCSEEECCTTEEEEEEEEECSTTCEEECSSEEEEESCEEEE
T ss_pred             --CccccccceeeecCCeEEEeeEEEeCCCCC----CCcEEEEEecCcceEEEcceecccCCeeEECCCCEEEEeeEEEe
Confidence              678999999999999999999999999864    48999999999999999999999999999999999999999999


Q ss_pred             cceeEecCcceEeC
Q 039887          228 SVDFIFGYGRSLYE  241 (241)
Q Consensus       228 ~vDfIfG~g~a~f~  241 (241)
                      +||||||+|++|||
T Consensus       155 ~vDFIfG~~~a~f~  168 (319)
T d1gq8a_         155 TVDFIFGNAAVVLQ  168 (319)
T ss_dssp             SSSCEEESCEEEEE
T ss_pred             eccEEecCceeEee
Confidence            99999999999996
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure