Citrus Sinensis ID: 039976

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------44
Protein Sequence
MAASKNSSKSEKGVDEATEEMVRSQDWEIDKGKDFDLSSFERRQQWRPVLDEASVSQRPLKKIPSASTLGSSSSRLVFPFAFDTSQQAIQFPQQFATSQLQTPLPNFHPPIQPAQTQQQMISFSAHQQQQGFPFFAGESMLPHQQHQRQLLQYWSDALNLSPRGRLMMNRIGPDGRPLFRPQAQPLNTTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDRAEDAALAYDREAFKLRGENARLNFPELFLNKDKAAVSTDPGSNISSPPSPYESSMPNRLQTQHAQNSLNSQVMSSEPIPAPPPQPKVEIPDSESGLGSSEATASDDVLAAAEGSGSGEGVSGSQELAWGEMAEAWFNAIPAGWGPGSPVWDDFDSSNNLLMPANLPFVNQSQQEFPDSDRQRQHDNSVSAASSTSPPCPMKPFFWKDQDHPQDSS
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHHcccHHHHcccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccEEEEcccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHcccccccccccccccccccccEEEcccccccccccccccccccccHHccccccccccccccccccccccccEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEccEEEcccccEEEEEEcccccEEEEEcccccHHHHHHHHHHHHHHHHcccEEEcccccHccccccccccccccccccccHcHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
maasknssksekgvdEATEEMVRSqdweidkgkdfdlssferrqqwrpvldeasvsqrplkkipsastlgssssrlvfpfafdtsqqaiQFPQQFatsqlqtplpnfhppiqpaqtQQQMISFSAhqqqqgfpffagesmlphqQHQRQLLQYWSDalnlsprgrlmmnrigpdgrplfrpqaqplnttklyrgvrqrhwgkwvaeirlprnrtrlwlgtfDRAEDAALAYDREAFKLRGenarlnfpelflnkdkaavstdpgsnissppspyessmpnrlqtQHAQNslnsqvmssepipapppqpkveipdsesglgsseatasddvlaaaegsgsgegvsgsqeLAWGEMAEAWFNaipagwgpgspvwddfdssnnllmpanlpfvnqsqqefpdsdrqrqhdnsvsaasstsppcpmkpffwkdqdhpqdss
Flexible Loop (DISEMBL)
maasknssksekgvdeateemvrsqdweidkgkdfdlssferrqqwrpvldeasvsqrplkkipsastlgsssSRLVFPFAFDTSQQAIQFPQQFATSQLQTPLPNFHPPIQPAQTQQQMISFSAHQQQQGFPFFAGESMLPHQQHQRQLLQYWSDALNLSPRGRLMMNRIGPDgrplfrpqaqplnttklyrgvrqrhwgkwvaeirlprnrtrlwlgtFDRAEDAALAYDREAFKLRGENARLNFPELFLNKDKAAVSTDPGSNISSPPSPYESSMPNRLQTQHAQNSLNSQVMSSEPIPAPPPQPKVEIPDSESGLGSSEATASDDVLAAAEGSGSGEGVSGSQELAWGEMAEAWFNAIPAGWGPGSPVWDDFDSSNNLLMPANLPFVNQSQQEFPDSDRQRQHDNSvsaasstsppcpmkpffwkdqdhpqdss
Low Complexity Region (SEG)
MAASKNSSKSEKGVDEATEEMVRSQDWEIDKGKDFDLSSFERRQQWRPVLDEASVSQRPLKKIPsastlgssssRLVFPFAFDTSQQAIQFPQQFATSQLQTPLPNFHPPIQPAQTQQQMISFSAHQQQQGFPFFAGESMLPhqqhqrqllqYWSDALNLSPRGRLMMNRIGPDGRPLFRPQAQPLNTTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDRAEDAALAYDREAFKLRGENARLNFPELFLNKDKAAVSTDPGsnissppspyessmpNRLQTQHAQNSLNSQVMSSepipapppqpkveipDSESGLGSSEATASDDVLaaaegsgsgegvsgsqeLAWGEMAEAWFNAIPAGWGPGSPVWDDFDSSNNLLMPANLPFVNQSQQEFPDSDRQRQHDNSVSAASSTSPPCPMKPFFWKDQDHPQDSS
Disordered region (IsUnstruct)
***************************************************************************LVFPFAFDTS**AI********************************************FF************RQLLQYWSDALNLSPRGRLMM****************PLNTTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDRAEDAALAYDREAFKLRGENARLNFPELFLN***********************************************************************************************LAWGEMAEAWFNAIPAGWGPGSPVWDDFDSSNNLLM******************************************************
Disordered Region (DISOPRED)
**************************************************************************************************************************************************************************************************VRQRHWGKWVAEIRLPRNRTRLWLGTFDRAEDAALAYDREAFKLRGENARLNFPE***************************************************************************************************LAWGEMAEAWFNAIPAGWGPGSPVWDDFDSSNNLLMPA**********************************CPMKPFFWKDQDHPQ***
Disordered Region (DISEMBL)
**********************RSQDWEIDKGKDFDLSSFERRQQWRPVLDEASVSQRPLKKIPSASTLGSSSSRLVFPFAFDTSQQAIQFPQQFATSQLQTPLPNFHPPIQPAQTQQQMISFSAHQQQQGFPFFAGESM********QLLQYWSDALNLSPRGRLMMNRIGPDGRPLFRPQAQPLNTTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDRAEDAALAYDREAFKLRGENARLNFPELFLNKDKA*****************************************************************************************QELAWGEMAEAWFNAIPAGWGPGSPVWDDFDSSNNLLMPANLPFVNQS*************************PCPMKPFFWKD********
Disordered Region (DISPRO)
**********************************FDLSSFERRQQWRPVLD***********************RLVFPF*FDTSQQA**************************QTQQQMISFSAHQQQQGFPFFAGESMLPHQQHQRQLLQYWSDALNL***************************TTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDRAEDAALAYDREAFKLRGENARLNFPEL***********************************************************************************************SQELAWGEMAEAWFNAIPAGWGPGSPVWDDFDSSNNLLMPANLPFV***********************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAASKNSSKSEKGVDEATEEMVRSQDWEIDKGKDFDLSSFERRQQWRPVLDEASVSQRPLKKIPSASTLGSSSSRLVFPFAFDTSQQAIQFPQQFATSQLQTPLPNFHPPIQPAQTQQQMISFSAHQQQQGFPFFAGESMLPHQQHQRQLLQYWSDALNLSPRGRLMMNRIGPDGRPLFRPQAQPLNTTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDRAEDAALAYDREAFKLRGENARLNFPELFLNKDKAAVSTDPGSNISSPPSPYESSMPNRLQTQHAQNSLNSQVMSSEPIPAPPPQPKVEIPDSESGLGSSEATASDDVLAAAEGSGSGEGVSGSQELAWGEMAEAWFNAIPAGWGPGSPVWDDFDSSNNLLMPANLPFVNQSQQEFPDSDRQRQHDNSVSAASSTSPPCPMKPFFWKDQDHPQDSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	438	2.2.26 [Sep-21-2011]
Q9SKT1	336	Ethylene-responsive trans	yes	no	0.691	0.901	0.408	7e-48
Q9M0J3	292	Ethylene-responsive trans	no	no	0.573	0.859	0.408	5e-44
Q8H1E4	334	Ethylene-responsive trans	no	no	0.353	0.464	0.456	4e-29
Q9SKW5	314	Ethylene-responsive trans	no	no	0.191	0.267	0.7	1e-28
O65665	272	Ethylene-responsive trans	no	no	0.401	0.647	0.412	1e-27
Q9LM15	261	Ethylene-responsive trans	no	no	0.152	0.256	0.820	1e-27
Q9SIE4	261	Ethylene-responsive trans	no	no	0.230	0.386	0.561	7e-27
Q9SVQ0	388	Ethylene-responsive trans	no	no	0.162	0.182	0.732	3e-25
Q9FJQ2	277	Ethylene-responsive trans	no	no	0.143	0.227	0.761	2e-24
P93007	218	Ethylene-responsive trans	no	no	0.132	0.266	0.706	2e-18

>sp|Q9SKT1|ERF53_ARATH Ethylene-responsive transcription factor ERF053 OS=Arabidopsis thaliana GN=ERF053 PE=2 SV=1

 Score =  191 bits (486), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 158/387 (40%), Positives = 188/387 (48%), Gaps = 84/387 (21%)

Query: 1   MAASKNSSKSEK--GVDEA--TEEMVRSQDWEIDKGKDFDLSSFERRQQWRPVLDEASVS 56
           MA +KN  KS +  G  EA   +EM   ++++   GK  D  S      W  + D +S S
Sbjct: 1   MATAKNKGKSIRVLGTSEAEKKDEMELEEEFQFSSGKYKD--SGPGSDMW--LGDASSTS 56

Query: 57  QRPLKKIPSASTLGSSSSRLVFPFAFDTSQQ----AIQFPQQFATSQLQTPLPNFHPPIQ 112
            R L+K     T    +  LV  +A          ++ FP  +    +Q      HP   
Sbjct: 57  PRSLRK---TRTFDRHNPYLVSSYATPQPPTTTTCSVSFPF-YLPPAIQNQQRFLHPNDP 112

Query: 113 PAQTQQQMISFSAHQQQQGFPFFAGESMLPHQQHQRQLLQYWSDALNLSPRGRLMMNRI- 171
             Q QQQMISF   QQ Q         +   QQ Q+ LLQYW D L LSP GR+MM  + 
Sbjct: 113 SGQRQQQMISFDPQQQVQ-------PYVAQQQQQQQHLLQYWRDILKLSPSGRMMMMNML 165

Query: 172 -GPDGRPLFRPQAQPLNTTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDRAEDAALA 230
                 PL RP  QP + TKLYRGVRQRHWGKWVAEIR PRNRTRLWLGTFD AE+AA+A
Sbjct: 166 RQESDLPLTRPPVQPFSATKLYRGVRQRHWGKWVAEIRKPRNRTRLWLGTFDTAEEAAMA 225

Query: 231 YDREAFKLRGENARLNFPELFLNKDKAAVSTDPGSNISSPPSPYESSMPNRLQTQHAQNS 290
           YDREAFKLRGE ARLNFPELFLNK                                    
Sbjct: 226 YDREAFKLRGETARLNFPELFLNK------------------------------------ 249

Query: 291 LNSQVMSSEPIPAPPPQPKVEIPDSESGLGSSEATASDDVLAAAEGSGSGEGVSG-SQEL 349
                   EP P       V     E+G      T+ D      + S +   V G S+E 
Sbjct: 250 -------QEPTP-------VHQKQCETG-----TTSEDSSRRGEDDSSTALAVGGVSEET 290

Query: 350 AWGEMAEAWFNAIPAGWGPGSPVWDDF 376
            W   AEAWFNAIP  WGPGSP+WDD+
Sbjct: 291 GW---AEAWFNAIPEEWGPGSPLWDDY 314

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9M0J3|ERF54_ARATH Ethylene-responsive transcription factor ERF054 OS=Arabidopsis thaliana GN=ERF054 PE=2 SV=1

 Score =  179 bits (453), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 146/357 (40%), Positives = 172/357 (48%), Gaps = 106/357 (29%)

Query: 29  IDKGKDFDLSSFERRQQWRPVLDEASVSQRPLKKIPSAS----TLGSSSSRL---VFPFA 81
           I KGK+ D  SF          + +S S R +KK+ S S       SSSS      FPF+
Sbjct: 11  ITKGKNVD-HSFGG--------EASSTSPRSMKKMKSPSRPKPYFQSSSSPYSLEAFPFS 61

Query: 82  FDTSQQAIQFPQQFATSQLQTPLPNFHPPIQPA-QTQQQMISFSAHQQQQGFPFFAGESM 140
            D + Q  Q        QL + +P       P  Q Q+QMISFS  QQQQ   + A    
Sbjct: 62  LDPTLQNQQ-------QQLGSYVPVLEQRQDPTMQGQKQMISFSPQQQQQQQQYMA---- 110

Query: 141 LPHQQHQRQLLQYWSDALNLSPRGRLMMNRIGPDGRPLFRPQAQPLNTTKLYRGVRQRHW 200
                      QYWSD LNLSPRGR+MM         + +   QP   TKLYRGVRQR W
Sbjct: 111 -----------QYWSDTLNLSPRGRMMMM--------MSQEAVQPYIATKLYRGVRQRQW 151

Query: 201 GKWVAEIRLPRNRTRLWLGTFDRAEDAALAYDREAFKLRGENARLNFPELFLNKDKAAVS 260
           GKWVAEIR PR+R RLWLGTFD AE+AA+AYDR+AFKLRG +A LNFPE F+NK+     
Sbjct: 152 GKWVAEIRKPRSRARLWLGTFDTAEEAAMAYDRQAFKLRGHSATLNFPEHFVNKESEL-- 209

Query: 261 TDPGSNISSPPSPYESSMPNRLQTQHAQNSLNSQVMSSEPIPAPPPQPKVEIPDSESGLG 320
                                    H  NS + +    EP     PQP      SE  L 
Sbjct: 210 -------------------------HDSNSSDQK----EP---ETPQP------SEVNLE 231

Query: 321 SSEATASDDVLAAAEGSGSGEGVSGSQELAWGEMAEAWFNAIPAGWGPGSPVWDDFD 377
           S E    D         G  EG           MAEAW+NAI +GWGP SP+WDD D
Sbjct: 232 SKELPVID--------VGREEG-----------MAEAWYNAITSGWGPESPLWDDLD 269

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8H1E4|RAP24_ARATH Ethylene-responsive transcription factor RAP2-4 OS=Arabidopsis thaliana GN=RAP2-4 PE=1 SV=1

 Score =  129 bits (325), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 73/160 (45%), Positives = 93/160 (58%), Gaps = 5/160 (3%)

Query: 166 LMMNRIGPDGRPLFRPQAQPLNTTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDRAE 225
           L+M + G  G         P   TKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFD AE
Sbjct: 126 LLMKQSGVAGSCFAYGSGVPSKPTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAE 185

Query: 226 DAALAYDREAFKLRGENARLNFPELFLNKDKAAVSTDPGSNI---SSPPSPYESSMPNRL 282
           +AALAYD+ A+KLRG+ ARLNFP   L  + + +  D G      SS  +  E+   +  
Sbjct: 186 EAALAYDKAAYKLRGDFARLNFPN--LRHNGSHIGGDFGEYKPLHSSVDAKLEAICKSMA 243

Query: 283 QTQHAQNSLNSQVMSSEPIPAPPPQPKVEIPDSESGLGSS 322
           +TQ    S  S     + + +P    KV+  ++   +G S
Sbjct: 244 ETQKQDKSTKSSKKREKKVSSPDLSEKVKAEENSVSIGGS 283

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SKW5|ERF55_ARATH Ethylene-responsive transcription factor ERF055 OS=Arabidopsis thaliana GN=ERF055 PE=2 SV=1

 Score =  127 bits (320), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 63/90 (70%), Positives = 70/90 (77%), Gaps = 6/90 (6%)

Query: 166 LMMNRIGPDGRPLFRPQAQPLNTT-----KLYRGVRQRHWGKWVAEIRLPRNRTRLWLGT 220
            M+N I P  +P F  Q  P + +     KLYRGVRQRHWGKWVAEIRLPRNRTRLWLGT
Sbjct: 113 CMLNFIEPS-QPGFMTQPGPSSGSVSKPAKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGT 171

Query: 221 FDRAEDAALAYDREAFKLRGENARLNFPEL 250
           FD AE+AALAYDR AFKLRG++ARLNFP L
Sbjct: 172 FDTAEEAALAYDRAAFKLRGDSARLNFPAL 201

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|O65665|ERF60_ARATH Ethylene-responsive transcription factor ERF060 OS=Arabidopsis thaliana GN=ERF060 PE=2 SV=1

 Score =  124 bits (311), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 87/211 (41%), Positives = 114/211 (54%), Gaps = 35/211 (16%)

Query: 140 MLPHQQHQRQLLQYWSDALNLSPRGRLMMNRIGPDGRPLFRPQAQPLNTTKLYRGVRQRH 199
           + P+Q HQ Q          L+ R  ++   + P   P+    AQ     KLYRGVRQRH
Sbjct: 54  LTPYQIHQIQN--------QLNQRRNIISPNLAPKPVPMKNMTAQ-----KLYRGVRQRH 100

Query: 200 WGKWVAEIRLPRNRTRLWLGTFDRAEDAALAYDREAFKLRGENARLNFPELFLNKDKAAV 259
           WGKWVAEIRLP+NRTRLWLGTFD AE+AA+AYD  A+KLRGE ARLNFP+ F ++D    
Sbjct: 101 WGKWVAEIRLPKNRTRLWLGTFDTAEEAAMAYDLAAYKLRGEFARLNFPQ-FRHEDGYYG 159

Query: 260 STDPGSNISSPPSPYESSMPNRLQTQHAQNSLNSQVMSSEPIPAPPPQ-----PKVEIPD 314
                    S  +P  SS+  +LQ       +   +  +E I  P  +     PK E  +
Sbjct: 160 G-------GSCFNPLHSSVDAKLQ------EICQSLRKTEDIDLPCSETELFPPKTEYQE 206

Query: 315 SESG-LGSSEATASDDVLAAAEGSGSGEGVS 344
           SE G L S E + SD+  +  E S    G++
Sbjct: 207 SEYGFLRSDENSFSDE--SHVESSSPESGIT 235

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LM15|RA213_ARATH Ethylene-responsive transcription factor RAP2-13 OS=Arabidopsis thaliana GN=RAP2-13 PE=1 SV=1

 Score =  124 bits (311), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 55/67 (82%), Positives = 61/67 (91%)

Query: 189 TKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDRAEDAALAYDREAFKLRGENARLNFP 248
           TKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFD AE+AALAYD+ A+KLRG+ ARLNFP
Sbjct: 80  TKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFP 139

Query: 249 ELFLNKD 255
           +L  N +
Sbjct: 140 DLRHNDE 146

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIE4|ERF56_ARATH Ethylene-responsive transcription factor ERF056 OS=Arabidopsis thaliana GN=ERF056 PE=2 SV=1

 Score =  122 bits (305), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 64/114 (56%), Positives = 74/114 (64%), Gaps = 13/114 (11%)

Query: 140 MLPHQQHQ--RQLLQYWSDALNLSPRGRLMMNRIGPDGRPLFRPQAQPLNTTKLYRGVRQ 197
           + P+Q HQ   QL    S   NLSP  R+ M  + P              T  LYRGVRQ
Sbjct: 28  LTPYQIHQIQNQLNHRRSTISNLSP-NRIRMKNLTPSTS----------KTKNLYRGVRQ 76

Query: 198 RHWGKWVAEIRLPRNRTRLWLGTFDRAEDAALAYDREAFKLRGENARLNFPELF 251
           RHWGKWVAEIRLP+NRTRLWLGTF+ AE AALAYD+ AF+LRG+ A+LNFP L 
Sbjct: 77  RHWGKWVAEIRLPKNRTRLWLGTFETAEKAALAYDQAAFQLRGDIAKLNFPNLI 130

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SVQ0|ERF62_ARATH Ethylene-responsive transcription factor ERF062 OS=Arabidopsis thaliana GN=ERF062 PE=2 SV=1

 Score =  116 bits (291), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 52/71 (73%), Positives = 57/71 (80%)

Query: 180 RPQAQPLNTTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDRAEDAALAYDREAFKLR 239
           R   Q    TKLYRGVRQRHWGKWVAEIRLPRNRTR+WLGTF+ AE AA+AYD  A+ LR
Sbjct: 220 RKVVQTTTPTKLYRGVRQRHWGKWVAEIRLPRNRTRVWLGTFETAEQAAMAYDTAAYILR 279

Query: 240 GENARLNFPEL 250
           GE A LNFP+L
Sbjct: 280 GEFAHLNFPDL 290

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJQ2|ERF57_ARATH Ethylene-responsive transcription factor ERF057 OS=Arabidopsis thaliana GN=ERF057 PE=2 SV=1

 Score =  113 bits (283), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 48/63 (76%), Positives = 57/63 (90%)

Query: 189 TKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDRAEDAALAYDREAFKLRGENARLNFP 248
            KLYRGVRQR WGKWVAEIRLP+NRTRLWLGTF+ A++AALAYD+ A K+RG+NARLNFP
Sbjct: 108 VKLYRGVRQRQWGKWVAEIRLPKNRTRLWLGTFETAQEAALAYDQAAHKIRGDNARLNFP 167

Query: 249 ELF 251
           ++ 
Sbjct: 168 DIV 170

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|P93007|EF112_ARATH Ethylene-responsive transcription factor ERF112 OS=Arabidopsis thaliana GN=ERF112 PE=2 SV=1

 Score = 94.0 bits (232), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 41/58 (70%), Positives = 46/58 (79%)

Query: 192 YRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDRAEDAALAYDREAFKLRGENARLNFPE 249
           YRGVRQR WGKW AEIR P    R+WLGTFD AE+AALAYD+ AF+ RG  A+LNFPE
Sbjct: 70  YRGVRQRPWGKWAAEIRDPNKAARVWLGTFDTAEEAALAYDKAAFEFRGHKAKLNFPE 127

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	438
224126717	469	AP2/ERF domain-containing transcription	0.958	0.895	0.571	1e-121
224127045	464	AP2/ERF domain-containing transcription	0.952	0.898	0.573	1e-118
225446948	465	PREDICTED: ethylene-responsive transcrip	0.949	0.894	0.561	1e-103
356544924	406	PREDICTED: ethylene-responsive transcrip	0.863	0.931	0.534	1e-102
255553817	426	conserved hypothetical protein [Ricinus	0.833	0.856	0.521	2e-96
356515194	415	PREDICTED: ethylene-responsive transcrip	0.837	0.884	0.512	2e-96
386646588	450	dehydration-responsive element-binding p	0.906	0.882	0.519	1e-94
356547020	419	PREDICTED: ethylene-responsive transcrip	0.867	0.906	0.506	2e-93
449438084	397	PREDICTED: ethylene-responsive transcrip	0.863	0.952	0.447	2e-80
351727056	308	dehydration-responsive element binding p	0.671	0.954	0.530	2e-78

>gi|224126717|ref|XP_002319909.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|148372108|gb|ABQ62985.1| RAP2-like protein [Populus trichocarpa] gi|222858285|gb|EEE95832.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 275/481 (57%), Positives = 319/481 (66%), Gaps = 61/481 (12%)

Query: 1   MAASKNS-SKSEKGVDEATEEMVRSQDWEIDKGKDFDLSSFERRQQWRPVLDEASVSQRP 59
           MAA+KN+  KS+KGV + T +M+  QDW++D+GK     SFERR QW+PV  EAS+  RP
Sbjct: 1   MAAAKNNFGKSKKGVVDETRKMMMEQDWQLDRGKKEADVSFERR-QWKPVFGEASLMDRP 59

Query: 60  LKKIPS---ASTLGSSSS------------------------------------RLVFPF 80
           LKKI S      + SS+S                                    RLVFPF
Sbjct: 60  LKKICSPERQEQIQSSASLAHQLPSCFSVSSSSASTLSLYPPSSSPSPMSSSSSRLVFPF 119

Query: 81  AFDTSQQAIQFPQQFATSQLQTPLPNFHPPIQPAQTQQQMISFSAHQQQQGF---PFFAG 137
           AF+ S Q IQ PQQF T+     LP FHP  Q AQ QQQMISF    QQ G    PF+AG
Sbjct: 120 AFEGSNQPIQCPQQFRTN---PSLPIFHPLSQVAQNQQQMISF-GQNQQHGIAYPPFYAG 175

Query: 138 ES-MLPHQQHQRQLLQYWSDALNLSPRGR-LMMNRIGPDGRPLFRPQAQPLNTTKLYRGV 195
              M  H  HQ+QL QYWSDALNLSPRGR +MMN++GPDGRPLFRP  QP+NT KLYRGV
Sbjct: 176 GLPMADHHHHQQQLFQYWSDALNLSPRGRMMMMNKLGPDGRPLFRPPIQPINTRKLYRGV 235

Query: 196 RQRHWGKWVAEIRLPRNRTRLWLGTFDRAEDAALAYDREAFKLRGENARLNFPELFLNKD 255
           RQRHWGKWVAEIRLPRNRTRLWLGTFD AEDAALAYDREAFKLRGENARLNFPELFLNKD
Sbjct: 236 RQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAALAYDREAFKLRGENARLNFPELFLNKD 295

Query: 256 KAAVSTDPGSNISSPPSPYESSMPNRLQTQHAQNSLNSQ--VMSSEPIPAPPPQPKV--E 311
           KA       S   S       +    L+ + AQ  LN Q   MS   +P  PP  +   +
Sbjct: 296 KAT------STAPSSTVSSPPTSNQSLKPKQAQEGLNLQAETMSPPILPPQPPPEQPPGD 349

Query: 312 IPDSESGLGSSEATASDDVLAAAEGSGSGEGVSGSQELAWGEMAEAWFNAIPAGWGPGSP 371
            PD +SG+GSS AT SD++ A AEGS +GEG+SGSQEL WG+MAEAW+NAI AGWGPGSP
Sbjct: 350 HPDDDSGMGSSGATVSDEIQAVAEGSSAGEGISGSQELEWGDMAEAWYNAIQAGWGPGSP 409

Query: 372 VWDDFDSSNNLLMPANLPFVNQSQQEFPDSDRQRQHDNSVSAASSTSPPCPMKPFFWKDQ 431
           VWDD DS+NNLL+ ++LPFVN +QQ+F DS    Q DN  SA+SS+S   PMK +F KDQ
Sbjct: 410 VWDDLDSTNNLLLQSHLPFVNPNQQQFNDSCCVLQ-DNMGSASSSSSSFFPMKSYFLKDQ 468

Query: 432 D 432
           D
Sbjct: 469 D 469

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127045|ref|XP_002329370.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222870420|gb|EEF07551.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 273/476 (57%), Positives = 323/476 (67%), Gaps = 59/476 (12%)

Query: 2   AASKNSSKSEKGVDEATEEMVRSQDWEIDKGKDFDLSSFERRQQWRPVLDEASVSQRPLK 61
           +A  N+ KS+KGV + T+ +   QDW++D+G+     SFERR QW+PV  EAS+S RP K
Sbjct: 3   SAKNNTGKSKKGVVDETQRLAMDQDWQLDRGRKEADISFERR-QWKPVFGEASLSDRPSK 61

Query: 62  KIPSASTLGSSSS---------------------------------------RLVFPFAF 82
           KI S      + S                                       +L FPFAF
Sbjct: 62  KIRSPERQEQTQSSAYLAHQLPPSFSVSSSSASTLSLYPPSLSSSPVSSSSSKLQFPFAF 121

Query: 83  DTSQQAIQFPQQFATSQLQTPLPNFHPPIQPAQTQQQMISFSAHQQQQGF---PFFAGES 139
           + S Q +QF QQ  T+   T    F PP Q AQ QQQMISF    QQ G    PFFAGES
Sbjct: 122 EGSNQPVQFHQQVGTNPSSTI---FRPPSQVAQNQQQMISF-GQNQQYGIAYPPFFAGES 177

Query: 140 MLPH-QQHQRQLLQYWSDALNLSPRGR-LMMNRIGPDGRPLFRPQAQPLNTTKLYRGVRQ 197
            L + QQ Q+QL QYW+DALNLSPRGR +MMNR+GP+GRPLFRP  QP+NTTKLYRGVRQ
Sbjct: 178 ALANQQQQQQQLFQYWNDALNLSPRGRMMMMNRLGPNGRPLFRPPIQPINTTKLYRGVRQ 237

Query: 198 RHWGKWVAEIRLPRNRTRLWLGTFDRAEDAALAYDREAFKLRGENARLNFPELFLNKDKA 257
           RHWGKWVAEIRLPRNRTRLWLGTFD AEDAALAYDREAFKLRGENA+LNFPELFLNK+K 
Sbjct: 238 RHWGKWVAEIRLPRNRTRLWLGTFDNAEDAALAYDREAFKLRGENAKLNFPELFLNKEKE 297

Query: 258 AVSTDPGSNISSPPSPYESSMPNRLQTQHAQNSLNSQVMSSEPIPAPPPQPKVEIPDSES 317
             +    S++SSPP+P +SSMP     + AQ  +N QV  + P P PP QP+ + PD +S
Sbjct: 298 TSTAPS-SSVSSPPTPNQSSMP-----KQAQEGINLQV-ETMPPPPPPEQPQGDHPDDDS 350

Query: 318 GLGSSEATASDDVLAAAEGSGSGEGVSGSQELAWGEMAEAWFNAIPAGWGPGSPVWDDFD 377
           GLGSS AT SD+V A   GS +GEG SGSQEL WG+MAEAW+NAI AGWGPGSPVWDD D
Sbjct: 351 GLGSSGATVSDEVQAV--GSSAGEGTSGSQELMWGDMAEAWYNAIQAGWGPGSPVWDDLD 408

Query: 378 SSNNLLMPANLPFVNQSQQEFPD-SDRQRQHDNSVSAASSTSPPCPMKPFFWKDQD 432
           ++NN L+ ++LPFV  +QQ+F D SD QRQ DN  SA+SS+S   P KPFFWKDQD
Sbjct: 409 TTNNFLLQSHLPFVTPNQQQFTDSSDLQRQQDNMGSASSSSSSSFPTKPFFWKDQD 464

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446948|ref|XP_002267468.1| PREDICTED: ethylene-responsive transcription factor ERF054-like [Vitis vinifera]

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 270/481 (56%), Positives = 316/481 (65%), Gaps = 65/481 (13%)

Query: 1   MAASKNSSKSEKGVDEATEEMVRSQDWEIDKGKDFDLSSFERRQQWRPVLDEASVSQRPL 60
           M A+K+  KS+K V E  + + R    E  K  DFDLS  ERRQ W+PV  EAS+S RPL
Sbjct: 1   MDAAKDGGKSKKSVGETRDMVGR----ERSKAGDFDLS-LERRQ-WKPVFGEASMSNRPL 54

Query: 61  KKIPSA------------------------STLGSSS---------SRLVFPFAFDTSQQ 87
           KKI S                         ST+ +SS         SR+VFPFAFD SQQ
Sbjct: 55  KKIRSPERRDSSLSSSSSSLAYQPPSPSLPSTVSASSAACLNLPPSSRIVFPFAFDGSQQ 114

Query: 88  AIQFPQQFATSQLQTPLPNFHPP--IQPAQTQQQMISFS--AHQQQQGFP-FFAGESMLP 142
            ++ PQQF T+    PL  F PP   + +Q QQQMISF+   H     +P F AG+S L 
Sbjct: 115 -MEIPQQFRTA----PLAMFPPPPMQRTSQNQQQMISFAPQHHHSMASYPAFLAGDSGL- 168

Query: 143 HQQHQRQLLQYWSDALNLSPRGRLMM-NRIGPDGRPLFRPQAQPLNTTKLYRGVRQRHWG 201
            QQ Q+QLLQYWSDALNLSPRGR+MM NR+  DGR  FRPQA P++TTKLYRGVRQRHWG
Sbjct: 169 QQQQQQQLLQYWSDALNLSPRGRMMMMNRLNQDGRNFFRPQAPPISTTKLYRGVRQRHWG 228

Query: 202 KWVAEIRLPRNRTRLWLGTFDRAEDAALAYDREAFKLRGENARLNFPELFLNKDKAAVST 261
           KWVAEIRLPRNRTRLWLGTFD AEDAALAYDREAFKLRGENARLNFPELFLNKDKA  + 
Sbjct: 229 KWVAEIRLPRNRTRLWLGTFDTAEDAALAYDREAFKLRGENARLNFPELFLNKDKAGSTA 288

Query: 262 DPGSNISSPPSPYESSMPNRLQT--QHAQNSLNSQVMSSEPIPAPPPQPKVEIPDSESG- 318
              S+ SSPP+P+E+S+  R Q   Q A   LN Q      +P P P P  +  ++E G 
Sbjct: 289 P-SSSSSSPPTPHENSLWGRSQNQPQQAPEGLNLQDSEVGMLPPPAPSPGYD-SNNELGL 346

Query: 319 -LGSSEATASDDVLAAAEGSGSGEGVSGS-QELAWGEMAEAWFNAIPAGWGPGSPVWDDF 376
            LGSSEA A +D +   + S +GE VS S  E  WGEMAEAWFNAIPAGWGPGS VWDD 
Sbjct: 347 VLGSSEAAARNDEV--QKSSNAGESVSESPPESVWGEMAEAWFNAIPAGWGPGSAVWDDL 404

Query: 377 DSSNNLLMPANLPFVN----QSQQEFPDSDRQRQHDNSVSAASSTSPPCPMKPFFWKDQD 432
           D+SNNLL+ +N+ F N    Q QQ F D D  RQ DN + +ASS+S  CPM+PFFW+DQD
Sbjct: 405 DTSNNLLLQSNVHFGNAHQQQQQQAFNDPDYGRQQDN-LDSASSSSSSCPMRPFFWRDQD 463

Query: 433 H 433
            
Sbjct: 464 Q 464

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544924|ref|XP_003540897.1| PREDICTED: ethylene-responsive transcription factor ERF053-like [Glycine max]

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 241/451 (53%), Positives = 279/451 (61%), Gaps = 73/451 (16%)

Query: 4   SKNSSKSEKGVDEATEEMV----RSQDWEIDKGKDFDLSSFERRQQWRPVLDEASVSQRP 59
           + NS KS K   E T+  V      QDWE +KGK  DLSS   R+QW+PV D+ASVS RP
Sbjct: 2   ANNSGKSNKEGVEGTQLKVIGESEGQDWEKEKGKRLDLSS--GRRQWKPVFDDASVSHRP 59

Query: 60  LKKIPSAS----------------TLGSSSSRLVFPFAFDTSQQAIQFPQQFATSQLQTP 103
           LKKI S                  +L   SSR+VFPFAF+ SQ  + FP  F T    T 
Sbjct: 60  LKKIRSPEPENPNQQQQQQPSSMLSLQPPSSRIVFPFAFEGSQHPMPFPHPFGT----TN 115

Query: 104 LPNFHPPIQPAQTQQQMISFSAHQQQQGFPFFAGESMLP---HQQHQRQLLQYWSDALNL 160
           LP F PP+ P    QQMISF   Q     PF A ES +P    Q H +QLLQYWSDALNL
Sbjct: 116 LPLFRPPLHPT---QQMISFLPSQNMGYPPFLAPESTMPHEHQQHHHQQLLQYWSDALNL 172

Query: 161 SPRGR-LMMNRIGPDGRPLFRPQAQPLNTTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLG 219
           SPRGR +MMNR   +GR + RPQAQPLN TKLYRGVRQRHWGKWVAEIRLPRNRTRLWLG
Sbjct: 173 SPRGRMMMMNRT--EGRQMLRPQAQPLNATKLYRGVRQRHWGKWVAEIRLPRNRTRLWLG 230

Query: 220 TFDRAEDAALAYDREAFKLRGENARLNFPELFLNKDKAAVSTDPGSNISSPPSPYESSMP 279
           TFD AEDAA+AYDREAFKLRGENA+LNFPELFLNKDKA  ST          +P  SS  
Sbjct: 231 TFDTAEDAAMAYDREAFKLRGENAKLNFPELFLNKDKAEQSTT---------APASSSNE 281

Query: 280 NRLQTQHAQNSLNSQVMSSEPIPAPPPQPKVEIPDSESGLGSSEATASDDVLAAAEGSGS 339
               +Q+ +                 P+P   IP+  +   S +   ++    A E + +
Sbjct: 282 GSTSSQNTKQ----------------PEP---IPEGTTNTESEDMPPTETF--AVENAVT 320

Query: 340 GEGVSGSQELAWGEMAEAWFNAIPAGWGPGSPVWDDFDSSNNLLMPANLPFVNQSQQEFP 399
            EG+S  QEL WGE    WFNAIPAGWGPGSPVWDD D +NNLL+ + LPFVN +QQEF 
Sbjct: 321 EEGISQPQELVWGE----WFNAIPAGWGPGSPVWDDLDPNNNLLLHSQLPFVNPNQQEFH 376

Query: 400 D---SDRQRQHDNSVSAASSTSPPCPMKPFF 427
           D   S R +Q DN+    SS SP CPM+PFF
Sbjct: 377 DAGASSRTQQEDNNTEPGSS-SPSCPMRPFF 406

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553817|ref|XP_002517949.1| conserved hypothetical protein [Ricinus communis] gi|223542931|gb|EEF44467.1| conserved hypothetical protein [Ricinus communis]

 Score =  359 bits (921), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 234/449 (52%), Positives = 279/449 (62%), Gaps = 84/449 (18%)

Query: 2   AASKNSSKSEKGVDEATEEMVRSQDWEIDKGK-DFDLSSFERRQQWRPVLDEASVS--QR 58
           AA  N  KS++G  +       SQ+WE++KGK + +LS  ER+QQW+PV  EAS++   R
Sbjct: 4   AAKNNRGKSKQGAVDT------SQEWELEKGKRETNLSIHERQQQWKPVFGEASMAADNR 57

Query: 59  PLKKI----------------------------PSASTL-----GSSSSRLVFPFAFDTS 85
           PLKKI                             S STL      SS SRL FPFAF+  
Sbjct: 58  PLKKIRSPERQDPIHVSSSLAHRSTPFSVPSTVSSISTLPLNPPSSSGSRLSFPFAFEG- 116

Query: 86  QQAIQFPQQFATSQLQTPLPNFHPPIQPAQTQQQMISFSAHQQQQGFPFFAGESMLPHQQ 145
               Q P QF T+   T LP F  P+   Q QQQMISF A  QQ   P  +  S L +QQ
Sbjct: 117 ----QLPHQFTTN---TCLPYFRHPLH-NQQQQQMISF-AQNQQLAMPSDSSPSALTYQQ 167

Query: 146 HQRQLLQYWSDALNLSPRGRLMM-NRIGPDGRPLFRPQAQPLNTTKLYRGVRQRHWGKWV 204
            Q+   QYWSDALNLSPRGR+MM NR+G DGRPLF    QP+NTTKLYRGVRQRHWGKWV
Sbjct: 168 QQQLY-QYWSDALNLSPRGRMMMMNRLGADGRPLFSQPIQPINTTKLYRGVRQRHWGKWV 226

Query: 205 AEIRLPRNRTRLWLGTFDRAEDAALAYDREAFKLRGENARLNFPELFLNKDKAAVSTDPG 264
           AEIRLPRNRTRLWLGTFD AEDAA+AYDREAF+LRGENARLNFPELFLNK+K        
Sbjct: 227 AEIRLPRNRTRLWLGTFDTAEDAAMAYDREAFRLRGENARLNFPELFLNKEK-------- 278

Query: 265 SNISSPPSPYESSMPNRLQTQHAQNSLNSQVMSSEPIPAPPPQPKVEIPDSESGLGSSEA 324
              ++P SP     P+ LQ    Q+                 Q + + PD++SG+GSS A
Sbjct: 279 ---TNPTSPQTRENPD-LQASGTQSMPPPPPPPQ--------QSQGDNPDNDSGMGSSGA 326

Query: 325 TASDDVLAAAEGS--GSGEGVSGSQELAWGE-MAEAWFNAIPAGWGPGSPVWDDFDSSNN 381
           T SD+V    EGS  G GEGVSGSQEL WG+ M EAWFN+I AGWGPGSPVWDD D++NN
Sbjct: 327 TVSDEVQPVVEGSDTGRGEGVSGSQELVWGDMMTEAWFNSISAGWGPGSPVWDDLDTNNN 386

Query: 382 LLMPA-NLPFVNQSQQEFPDSDRQRQHDN 409
           LL+ + +LPF +      P+ ++Q QHDN
Sbjct: 387 LLLQSHDLPFGS------PNHEQQEQHDN 409

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515194|ref|XP_003526286.1| PREDICTED: ethylene-responsive transcription factor ERF054-like [Glycine max]

 Score =  358 bits (920), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 225/439 (51%), Positives = 260/439 (59%), Gaps = 72/439 (16%)

Query: 1   MAASKNSSKSEKGVDEATEEMV----RSQDWEIDKGKDFDLSSFERRQQWRPVLDEASVS 56
           MA ++  S  E GV+E     V      QDWEI+KGK  DLSS   R+QW+PV D+AS+S
Sbjct: 1   MANNREKSTKE-GVEETHHHKVIGESEGQDWEIEKGKGLDLSS--GRRQWKPVFDDASLS 57

Query: 57  QRPLKKI----------------PSASTLGSSSSRLVFPFAFDTSQQAIQFPQQFATSQL 100
            RPLKKI                 S  +L   SSR+VFPFAF+ SQ  + FP  F T+ L
Sbjct: 58  HRPLKKIRSPERENPNQQQQQPPSSMLSLQPPSSRIVFPFAFEGSQHPMPFPHPFGTTNL 117

Query: 101 QTPLPNFHPPIQPAQTQQQMISFSAHQQQQGFPFFAGESMLPHQQHQRQLLQ------YW 154
               PN HP        QQMISF + Q     PF A ES +PHQ  Q           YW
Sbjct: 118 PLFRPNLHP-------TQQMISFGSQQNMGYPPFLAPESTMPHQHQQHLQQHHQQLLHYW 170

Query: 155 SDALNLSPRGRLMMNRIGPDGRPLFRPQAQPLNTTKLYRGVRQRHWGKWVAEIRLPRNRT 214
           SDA+NLSPRGR+MM     +GR + RPQAQPLN TKLYRGVRQRHWGKWVAEIRLPRNRT
Sbjct: 171 SDAINLSPRGRMMMMMNRTEGRQMLRPQAQPLNATKLYRGVRQRHWGKWVAEIRLPRNRT 230

Query: 215 RLWLGTFDRAEDAALAYDREAFKLRGENARLNFPELFLNKDKAAVSTDPGSNISSPPSPY 274
           RLWLGTFD AEDAA+AYDREAFKLRGENA+LNFPELFLNKDKA  ST      SS     
Sbjct: 231 RLWLGTFDTAEDAAMAYDREAFKLRGENAKLNFPELFLNKDKAEQSTTVAPASSSNEGST 290

Query: 275 ESSMPNRLQTQHAQNSLNSQVMSSEPIPAPPPQPKVEIPDSESGLGSSEATASDDVLAAA 334
            +S  N  Q               EPIP        +IP +E+               A 
Sbjct: 291 STSSQNTKQ--------------PEPIPEEINTESEDIPPTET--------------IAE 322

Query: 335 EGSGSGEGVSGSQELAWGEMAEAWFNAIPAGWGPGSPVWDDFDSSNNLLMPANLPFVNQS 394
           E + +G+G+S  QEL WGE    WFNAIPAGWGPGSPVWDD D +NNLL+ + LPFVN +
Sbjct: 323 ENAETGKGISQPQELVWGE----WFNAIPAGWGPGSPVWDDLDPNNNLLLHSQLPFVNPN 378

Query: 395 QQEFPD----SDRQRQHDN 409
           QQEF D    S + +Q DN
Sbjct: 379 QQEFHDDAGASSQIQQEDN 397

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|386646588|gb|AFJ14638.1| dehydration-responsive element-binding protein (DREB6), partial [Malus x domestica]

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 236/454 (51%), Positives = 286/454 (62%), Gaps = 57/454 (12%)

Query: 21  MVRSQDWEIDKGKDFDLSSFERRQQWRPVLDEASV-SQRPLKKIPS-------------- 65
           M  S +WE +K K+ D S FER   W+P   EAS  S RPLKK+ S              
Sbjct: 12  METSGEWEANKDKELDFS-FER-PPWKPGFSEASTASNRPLKKVKSPERQDPIQASPSLD 69

Query: 66  ---------ASTLGSSSSRLVFPFAFDTSQQ-AIQFPQQFATSQLQTPLPNFHPPIQPAQ 115
                    A     SSS++VFPF+FD SQQ  +QFP QF      T LP F  PIQ   
Sbjct: 70  HHQTPSPIIAPHPSYSSSKIVFPFSFDGSQQPMMQFPHQFNP----TNLPMFPSPIQQQL 125

Query: 116 TQQQ--MISFSAHQQQ------QGFPF-FAGESMLPHQQHQRQLLQYWSDALNLSPRGRL 166
            Q    MISF + QQQ        +P  F GES +  QQHQ+ +LQ+WSDALNLSPRGR+
Sbjct: 126 QQNPQQMISFESQQQQPQQQQGMSYPLPFVGES-VSWQQHQK-MLQHWSDALNLSPRGRV 183

Query: 167 MMNRIGPDGRPLFRPQAQPLNTTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDRAED 226
           MMNR+GPDGRP+FRP A P NTTKLY GVRQRHW KWVAEIRLPRNRTRLWLGTFD AED
Sbjct: 184 MMNRLGPDGRPMFRPPAMPYNTTKLYSGVRQRHWRKWVAEIRLPRNRTRLWLGTFDTAED 243

Query: 227 AALAYDREAFKLRGENARLNFPELFLNKDKAAVSTDPGSNISSPPSP-YESSMPNRLQTQ 285
           AA+AYDREAFKLRGENARLNFPELFLNKDK+ VS     + ++   P +E S P R + Q
Sbjct: 244 AAMAYDREAFKLRGENARLNFPELFLNKDKSDVSVSSAPSSAATSPPRHEGSKPTRNRKQ 303

Query: 286 HAQNSLNSQVMSSEPIPAPPPQPKVE---IPDSESGLGSSEATASDDVLAAAEGSGSGEG 342
             +  + S   + E +P PPP P  +    PD++SGL S+EA A D+V    +G+G G  
Sbjct: 304 PQK--IKSSASNIEAMP-PPPIPHTQEENSPDNDSGLESNEAKAIDEVEVNIDGAGGGS- 359

Query: 343 VSGSQELAWGEMAEAWFNAIPAGWGPGSPVWDDFDSSNNLLMPANLPFVNQSQQEFPDSD 402
            S  +E+ WG+MAE W NAIPAGWGPGSPVWDD D  NNLL+ ++LPF N +QQ++  + 
Sbjct: 360 -SQQKEIVWGDMAEDWLNAIPAGWGPGSPVWDDLD--NNLLLQSHLPFTNPNQQDYNINI 416

Query: 403 RQRQ----HDNSVSAASSTSPPCPMKPFFWKDQD 432
             +Q      +   + SS+S   P K  FWKDQD
Sbjct: 417 NPQQAIQNSGSGSGSGSSSSSSYPTKNLFWKDQD 450

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356547020|ref|XP_003541916.1| PREDICTED: ethylene-responsive transcription factor ERF054-like [Glycine max]

 Score =  349 bits (895), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 237/468 (50%), Positives = 279/468 (59%), Gaps = 88/468 (18%)

Query: 3   ASKNSSKSEKG--VDEATEEMVRSQDWEIDKGKDFDLSSFERRQQWRPVLDEASVS-QRP 59
           A+ NS K + G    + + +   SQDWEI+KGK  D SS +RRQ W+PV D+AS+S  RP
Sbjct: 2   AAANSGKFDVGDETHKNSRKGSESQDWEIEKGKGVDCSSSQRRQ-WKPVFDDASISYNRP 60

Query: 60  LKKIPS-----------------------ASTLGSSSSRLVFPFAFDTSQQAIQFPQQFA 96
           LKKI S                        S    SSSR+VFPFAFD SQ  +QFP QF 
Sbjct: 61  LKKIRSPDRQETNQSSSSSSSTTPFEPSPLSNPPPSSSRIVFPFAFDGSQHPMQFPHQFG 120

Query: 97  TSQLQTPLPNFHPPIQPAQTQQQMISFSAHQQQQGF---PFFAGES-------MLPHQQH 146
           T+   +P P  HP  Q    Q QMISF + QQ       P  A +S           QQH
Sbjct: 121 TT-TNSPFP--HPSFQ--NQQHQMISFGSSQQHNNLAYPPIIARDSSSLVHHHHQQQQQH 175

Query: 147 QRQLLQYWSDALNLSPRGRLMMNRIGPDGRPLFRPQAQPLNTTKLYRGVRQRHWGKWVAE 206
           Q+QLLQYWS ALNLSPRG  M+ R+GPDGRPLF P  Q +NTTKLYRGVRQRHWGKWVAE
Sbjct: 176 QQQLLQYWSGALNLSPRG--MLTRLGPDGRPLFSPPTQRINTTKLYRGVRQRHWGKWVAE 233

Query: 207 IRLPRNRTRLWLGTFDRAEDAALAYDREAFKLRGENARLNFPELFLNKDKAAVSTDPGSN 266
           IRLPRNRTRLWLGTFD AEDAA+AYDREAFK RGENARLNFPELF NKDK     +  S 
Sbjct: 234 IRLPRNRTRLWLGTFDTAEDAAMAYDREAFKQRGENARLNFPELFFNKDKKEQGEEEAS- 292

Query: 267 ISSPPSPYESSMPNRLQTQHAQNSLNSQVMSSEPIPAPPPQPKVEIPDSESGLG-SSEAT 325
                SP  S++  + +                    PPP    ++   ES    S +AT
Sbjct: 293 -----SPVLSAIAKQNE--------------------PPPAHHRDVTIEESNENDSGDAT 327

Query: 326 ASDDVLAAAEGSGSGEGVSGSQELAWGEMAEAWFNAIPAGWGPGSPVWDDFDSSNNLLMP 385
            SD+V A A  + S EGV  SQEL WGEM+ AWFNAIPA WGPGSP+WDD D++NNLL  
Sbjct: 328 VSDEVHAPA-ATASSEGV--SQELVWGEMS-AWFNAIPAAWGPGSPMWDDLDATNNLLCQ 383

Query: 386 ANLPFVNQSQQEFPDS-DRQRQHDNSVSAASSTSPPCPMKPFFWKDQD 432
           +++PF N +QQ+F D+ D QRQ  N       T P      + WKDQD
Sbjct: 384 SHIPFSNPNQQQFNDADDAQRQEQN-------TGP-----GYLWKDQD 419

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438084|ref|XP_004136820.1| PREDICTED: ethylene-responsive transcription factor ERF053-like [Cucumis sativus] gi|449522996|ref|XP_004168511.1| PREDICTED: ethylene-responsive transcription factor ERF053-like [Cucumis sativus]

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 202/451 (44%), Positives = 261/451 (57%), Gaps = 73/451 (16%)

Query: 1   MAASKNSSKSEKGVDEATEEMVRSQDWEIDKGKDFDLSSFERRQQWRPVLDEASVSQRPL 60
           MA  K + K +  +D  T       D +I+KGK     S ER QQW+PVLD+A +S+RPL
Sbjct: 1   MAEDKKTGKLKMVIDANTP------DKKIEKGKHVAAVSLER-QQWKPVLDDAFLSRRPL 53

Query: 61  KKIPSAS----------TLGSSSSRLVFPFAFDTSQQA-IQFPQQFATSQLQTPLPNFHP 109
           KKI S+           +L   SS++ FPF F+ SQ + I           Q P+ +   
Sbjct: 54  KKICSSDFHNPFLHSPLSLSPPSSKIQFPFDFEASQHSSITTTTTTTQFNSQHPISSSSS 113

Query: 110 PIQP----AQTQQQMISFSAHQQQQ-GFP--FFAGESMLPHQQHQRQLLQYWSDALNLSP 162
              P       +QQMISFS++QQQ  GFP  F  G+ +      Q++L +YWSDA +LSP
Sbjct: 114 SSSPFTAFGSPEQQMISFSSNQQQGFGFPPYFLNGDPV----ASQQRLFKYWSDAFHLSP 169

Query: 163 RGR-LMMNRIGPDGRPLFRPQAQPLNTTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTF 221
           RGR +MM+R GPDG  LFRP  QP++ TKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTF
Sbjct: 170 RGRAMMMSRFGPDGGNLFRPPLQPISATKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTF 229

Query: 222 DRAEDAALAYDREAFKLRGENARLNFPELFLNKDKAAVSTDPGSNISSPPSPYESSMPNR 281
           D AEDAA+AYDREAFKLRGENARLNFP+ F  KD           I    +  E ++P  
Sbjct: 230 DTAEDAAMAYDREAFKLRGENARLNFPDRFFKKD-----------IPKTEAETEHTIP-I 277

Query: 282 LQTQHAQNSLNSQVMSSEPIPAPPPQPKVEIPDSESGLGSSEATASDDVLAAAEGSGSGE 341
            +  H +N +         +  PP + K     +ESG  +SE T                
Sbjct: 278 TEEAHPENFI---------LLPPPEEEKPNNDLTESGSCASEPT---------------- 312

Query: 342 GVSGSQELAWGEMAEAWFNAIPAGWGPGSPVWDDFDSSNNLLMPANLPFVNQSQQEFPDS 401
                 E+ WGEM EAWFNAIPAGWGPGS VWD+ D +NNL++ + +PF + ++Q+  +S
Sbjct: 313 ------EMVWGEMEEAWFNAIPAGWGPGSAVWDNLDPTNNLVLQSQIPFGSSNEQQMNES 366

Query: 402 DRQRQHDNSVSAASSTSPPCPMKPFFWKDQD 432
           +  +    +  +ASS+S   P K F WKDQD
Sbjct: 367 NDNQNKLETSESASSSSTSAPTKLFLWKDQD 397

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727056|ref|NP_001235100.1| dehydration-responsive element binding protein 5 [Glycine max] gi|148278091|gb|ABQ53928.1| dehydration-responsive element binding protein 5 [Glycine max]

 Score =  299 bits (765), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 190/358 (53%), Positives = 220/358 (61%), Gaps = 64/358 (17%)

Query: 89  IQFPQQFATSQLQTPLPNFHPPIQPAQTQQQMISFSAHQQQQGF---PFFAGES------ 139
           +QFP QF T+   +P P  HP  Q    Q QMISF + QQ       P  A +S      
Sbjct: 1   MQFPHQFGTT-TNSPFP--HPSFQ--NQQHQMISFGSSQQHNNLAYPPIIASDSSSLLHQ 55

Query: 140 ----MLPHQQHQRQLLQYWSDALNLSPRGRLMMNRIGPDGRPLFRPQAQPLNTTKLYRGV 195
                  HQQHQ+QLLQYWSDALNLSPRG  M+ R+GPDGRPLFR   QP+NTTKLYRGV
Sbjct: 56  HHHHQQQHQQHQQQLLQYWSDALNLSPRG--MLTRLGPDGRPLFRLPTQPINTTKLYRGV 113

Query: 196 RQRHWGKWVAEIRLPRNRTRLWLGTFDRAEDAALAYDREAFKLRGENARLNFPELFLNKD 255
           RQRHWGKWVAEIRLPRNRTRLWLGTFD AEDAA+AYDREAFKLRGENARLNFPELFLNKD
Sbjct: 114 RQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAAMAYDREAFKLRGENARLNFPELFLNKD 173

Query: 256 KAAVSTDPGSNISSPPSPYESSMPNRLQTQHAQNSLNSQVMSSEPIPAPPPQPKVEIPDS 315
           K           SSP                        V+S+      P     ++P  
Sbjct: 174 KKEEQQQQEQEASSP------------------------VLSAIAKQHEPSSEHRDVPIE 209

Query: 316 ESGLG-SSEATASDDVLAAAEGSGSGEGVSGSQELAWGEMAEAWFNAIPAGWGPGSPVWD 374
           ES    S +AT SDD + A   + S EGV  SQE+ WGEM+ AWFNAIPA WGPGSP+WD
Sbjct: 210 ESNENDSGDATVSDDQVHAT--TESSEGV--SQEMVWGEMS-AWFNAIPAAWGPGSPMWD 264

Query: 375 DFDSSNNLLMPANLPFVNQSQQEFPDSDRQRQHDNSVSAASSTSPPCPMKPFFWKDQD 432
           D D++NNLL  +++PF N +QQE  D++RQ Q         +T P      + WKDQD
Sbjct: 265 DLDATNNLLCQSHIPFSNPNQQELNDAERQEQ---------NTGP-----GYLWKDQD 308

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	438
TAIR|locus:2051359	336	ERF53 "ERF domain 53" [Arabido	0.557	0.726	0.460	6.9e-57
TAIR|locus:2123708	292	AT4G28140 [Arabidopsis thalian	0.349	0.523	0.491	2.3e-44
TAIR|locus:2029491	334	RAP2.4 "related to AP2 4" [Ara	0.205	0.269	0.681	8.2e-28
TAIR|locus:2034295	314	AT1G36060 [Arabidopsis thalian	0.189	0.264	0.707	2.2e-27
TAIR|locus:2015061	261	AT1G22190 [Arabidopsis thalian	0.152	0.256	0.820	1.9e-26
TAIR|locus:2135282	272	AT4G39780 [Arabidopsis thalian	0.178	0.286	0.707	8.4e-26
TAIR|locus:2119555	388	AT4G13620 [Arabidopsis thalian	0.162	0.182	0.732	3.3e-24
TAIR|locus:2060385	261	AT2G22200 [Arabidopsis thalian	0.152	0.256	0.75	5.3e-24
TAIR|locus:2171840	277	AT5G65130 [Arabidopsis thalian	0.139	0.220	0.786	6.8e-24
TAIR|locus:2014185	335	AT1G64380 [Arabidopsis thalian	0.139	0.182	0.819	1.1e-23

TAIR|locus:2051359 ERF53 "ERF domain 53" [Arabidopsis thaliana (taxid:3702)]

 Score = 487 (176.5 bits), Expect = 6.9e-57, Sum P(2) = 6.9e-57
 Identities = 121/263 (46%), Positives = 145/263 (55%)

Query:     1 MAASKNSSKSEK--GVDEAT--EEMVRSQDWEIDKGKDFDLSSFERRQQWRPVLDEASVS 56
             MA +KN  KS +  G  EA   +EM   ++++   GK  D  S      W  + D +S S
Sbjct:     1 MATAKNKGKSIRVLGTSEAEKKDEMELEEEFQFSSGKYKD--SGPGSDMW--LGDASSTS 56

Query:    57 QRPLKKIPXXXXXX-XXXXRLVFPFAFDTSQQAIQFPQQFATSQLQTPLPNFHPPIQPAQ 115
              R L+K                 P    T+  ++ FP  +    +Q      HP     Q
Sbjct:    57 PRSLRKTRTFDRHNPYLVSSYATPQPPTTTTCSVSFPF-YLPPAIQNQQRFLHPNDPSGQ 115

Query:   116 TQQQMISFSAHQQQQGFPFFAGESMLPXXXXXXXXXXYWSDALNLSPRGRLMM-NRIGPD 174
              QQQMISF   QQ Q  P+ A +              YW D L LSP GR+MM N +  +
Sbjct:   116 RQQQMISFDPQQQVQ--PYVAQQQQ-----QQQHLLQYWRDILKLSPSGRMMMMNMLRQE 168

Query:   175 GR-PLFRPQAQPLNTTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDRAEDAALAYDR 233
                PL RP  QP + TKLYRGVRQRHWGKWVAEIR PRNRTRLWLGTFD AE+AA+AYDR
Sbjct:   169 SDLPLTRPPVQPFSATKLYRGVRQRHWGKWVAEIRKPRNRTRLWLGTFDTAEEAAMAYDR 228

Query:   234 EAFKLRGENARLNFPELFLNKDK 256
             EAFKLRGE ARLNFPELFLNK +
Sbjct:   229 EAFKLRGETARLNFPELFLNKQE 251

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:2000070 "regulation of response to water deprivation" evidence=IEP

TAIR|locus:2123708 AT4G28140 [Arabidopsis thaliana (taxid:3702)]

 Score = 360 (131.8 bits), Expect = 2.3e-44, Sum P(2) = 2.3e-44
 Identities = 83/169 (49%), Positives = 101/169 (59%)

Query:    95 FATSQLQTPLPNFHPPIQPA-QTQQQMI-SFSAHQQQQGFPFFAGESML----PXXXXXX 148
             F +S     L  F   + P  Q QQQ + S+    +Q+  P   G+  +    P      
Sbjct:    46 FQSSSSPYSLEAFPFSLDPTLQNQQQQLGSYVPVLEQRQDPTMQGQKQMISFSPQQQQQQ 105

Query:   149 XX--XXYWSDALNLSPRGRLMMNRIGPDGRPLFRPQAQPLNTTKLYRGVRQRHWGKWVAE 206
                   YWSD LNLSPRGR+MM         + +   QP   TKLYRGVRQR WGKWVAE
Sbjct:   106 QQYMAQYWSDTLNLSPRGRMMMM--------MSQEAVQPYIATKLYRGVRQRQWGKWVAE 157

Query:   207 IRLPRNRTRLWLGTFDRAEDAALAYDREAFKLRGENARLNFPELFLNKD 255
             IR PR+R RLWLGTFD AE+AA+AYDR+AFKLRG +A LNFPE F+NK+
Sbjct:   158 IRKPRSRARLWLGTFDTAEEAAMAYDRQAFKLRGHSATLNFPEHFVNKE 206

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=IEP

TAIR|locus:2029491 RAP2.4 "related to AP2 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 62/91 (68%), Positives = 69/91 (75%)

Query:   160 LSPRGRLMMNRIGPDGRPLFRPQAQPLNTTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLG 219
             LSP+  L+M + G  G         P   TKLYRGVRQRHWGKWVAEIRLPRNRTRLWLG
Sbjct:   121 LSPKP-LLMKQSGVAGSCFAYGSGVPSKPTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLG 179

Query:   220 TFDRAEDAALAYDREAFKLRGENARLNFPEL 250
             TFD AE+AALAYD+ A+KLRG+ ARLNFP L
Sbjct:   180 TFDTAEEAALAYDKAAYKLRGDFARLNFPNL 210

GO:0003677 "DNA binding" evidence=IEA;IDA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA;TAS

GO:0005634 "nucleus" evidence=ISM;IC;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0071472 "cellular response to salt stress" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP;IMP

GO:0009416 "response to light stimulus" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP

GO:0009873 "ethylene mediated signaling pathway" evidence=IMP

GO:0010017 "red or far-red light signaling pathway" evidence=IGI

GO:0009611 "response to wounding" evidence=IEP

GO:0009736 "cytokinin mediated signaling pathway" evidence=IMP

GO:0045595 "regulation of cell differentiation" evidence=IMP

GO:0009409 "response to cold" evidence=IEP

GO:0043565 "sequence-specific DNA binding" evidence=IDA

TAIR|locus:2034295 AT1G36060 [Arabidopsis thaliana (taxid:3702)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 63/89 (70%), Positives = 70/89 (78%)

Query:   167 MMNRIGPDGRPLFRPQAQPLNTT-----KLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTF 221
             M+N I P  +P F  Q  P + +     KLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTF
Sbjct:   114 MLNFIEPS-QPGFMTQPGPSSGSVSKPAKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTF 172

Query:   222 DRAEDAALAYDREAFKLRGENARLNFPEL 250
             D AE+AALAYDR AFKLRG++ARLNFP L
Sbjct:   173 DTAEEAALAYDRAAFKLRGDSARLNFPAL 201

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2015061 AT1G22190 [Arabidopsis thaliana (taxid:3702)]

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 55/67 (82%), Positives = 61/67 (91%)

Query:   189 TKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDRAEDAALAYDREAFKLRGENARLNFP 248
             TKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFD AE+AALAYD+ A+KLRG+ ARLNFP
Sbjct:    80 TKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFP 139

Query:   249 ELFLNKD 255
             +L  N +
Sbjct:   140 DLRHNDE 146

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009409 "response to cold" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP

GO:0043565 "sequence-specific DNA binding" evidence=IDA

TAIR|locus:2135282 AT4G39780 [Arabidopsis thaliana (taxid:3702)]

 Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 58/82 (70%), Positives = 67/82 (81%)

Query:   177 PLFRPQAQPL-NTT--KLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDRAEDAALAYDR 233
             P   P+  P+ N T  KLYRGVRQRHWGKWVAEIRLP+NRTRLWLGTFD AE+AA+AYD 
Sbjct:    75 PNLAPKPVPMKNMTAQKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAAMAYDL 134

Query:   234 EAFKLRGENARLNFPELFLNKD 255
              A+KLRGE ARLNFP+ F ++D
Sbjct:   135 AAYKLRGEFARLNFPQ-FRHED 155

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2119555 AT4G13620 [Arabidopsis thaliana (taxid:3702)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 52/71 (73%), Positives = 57/71 (80%)

Query:   180 RPQAQPLNTTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDRAEDAALAYDREAFKLR 239
             R   Q    TKLYRGVRQRHWGKWVAEIRLPRNRTR+WLGTF+ AE AA+AYD  A+ LR
Sbjct:   220 RKVVQTTTPTKLYRGVRQRHWGKWVAEIRLPRNRTRVWLGTFETAEQAAMAYDTAAYILR 279

Query:   240 GENARLNFPEL 250
             GE A LNFP+L
Sbjct:   280 GEFAHLNFPDL 290

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2060385 AT2G22200 [Arabidopsis thaliana (taxid:3702)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 51/68 (75%), Positives = 60/68 (88%)

Query:   188 TTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDRAEDAALAYDREAFKLRGENARLNF 247
             T  LYRGVRQRHWGKWVAEIRLP+NRTRLWLGTF+ AE AALAYD+ AF+LRG+ A+LNF
Sbjct:    67 TKNLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFETAEKAALAYDQAAFQLRGDIAKLNF 126

Query:   248 PELFLNKD 255
             P L +++D
Sbjct:   127 PNL-IHED 133

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2171840 AT5G65130 [Arabidopsis thaliana (taxid:3702)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 48/61 (78%), Positives = 57/61 (93%)

Query:   190 KLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDRAEDAALAYDREAFKLRGENARLNFPE 249
             KLYRGVRQR WGKWVAEIRLP+NRTRLWLGTF+ A++AALAYD+ A K+RG+NARLNFP+
Sbjct:   109 KLYRGVRQRQWGKWVAEIRLPKNRTRLWLGTFETAQEAALAYDQAAHKIRGDNARLNFPD 168

Query:   250 L 250
             +
Sbjct:   169 I 169

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2014185 AT1G64380 [Arabidopsis thaliana (taxid:3702)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 50/61 (81%), Positives = 54/61 (88%)

Query:   190 KLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDRAEDAALAYDREAFKLRGENARLNFPE 249
             KLYRGVRQRHWGKWVAEIRLP+NR R+WLGT+D AE AA AYDR A+KLRGE ARLNFP 
Sbjct:   134 KLYRGVRQRHWGKWVAEIRLPQNRMRVWLGTYDTAEAAAYAYDRAAYKLRGEYARLNFPN 193

Query:   250 L 250
             L
Sbjct:   194 L 194

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=IEP

GO:0015824 "proline transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	438
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	4e-34
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	3e-31
pfam00847	53	pfam00847, AP2, AP2 domain	1e-13

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score =  121 bits (305), Expect = 4e-34
 Identities = 43/63 (68%), Positives = 47/63 (74%)

Query: 192 YRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDRAEDAALAYDREAFKLRGENARLNFPELF 251
           YRGVRQR WGKWVAEIR P    R+WLGTFD AE+AA AYDR AFK RG +ARLNFP   
Sbjct: 2   YRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSL 61

Query: 252 LNK 254
            + 
Sbjct: 62  YDS 64

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score =  113 bits (286), Expect = 3e-31
 Identities = 42/61 (68%), Positives = 46/61 (75%)

Query: 190 KLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDRAEDAALAYDREAFKLRGENARLNFPE 249
             YRGVRQR WGKWVAEIR P    R+WLGTFD AE+AA AYDR A KLRG +A LNFP+
Sbjct: 1   SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPD 60

Query: 250 L 250
            
Sbjct: 61  S 61

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 64.6 bits (158), Expect = 1e-13
 Identities = 26/52 (50%), Positives = 31/52 (59%), Gaps = 4/52 (7%)

Query: 192 YRGVRQRH-WGKWVAEIRLP--RNRTRLWLGTFDRAEDAALAYDREAFKLRG 240
           Y+GVR    WG+WVAEIR P  + + R  LGTF   E+AA A      KLRG
Sbjct: 3   YKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFG-TEEAARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	438
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.81
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.8
PHA00280	121	putative NHN endonuclease	99.36
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.05

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.81  E-value=7.8e-20  Score=141.94  Aligned_cols=64  Identities=67%  Similarity=1.181  Sum_probs=60.8

Q ss_pred             ceeeeEECCCCcEEEEEeecCCCeEEeeCCCCCHHHHHHHHHHHHHHhhCCCCCCCCCcccccc
Q 039976          191 LYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDRAEDAALAYDREAFKLRGENARLNFPELFLNK  254 (438)
Q Consensus       191 ~YRGVR~R~~GKW~AeIr~p~~gKRiwLGTFdTaEEAArAYDrAAiklrG~~A~lNFP~~~~~k  254 (438)
                      +||||+++++|||+|+|+++.+++++|||+|+|+||||+|||.++++++|.++.+|||...|++
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~~   64 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYDS   64 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCCC
Confidence            5999998889999999999889999999999999999999999999999999999999988853

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.80  E-value=1.1e-19  Score=139.20  Aligned_cols=61  Identities=69%  Similarity=1.173  Sum_probs=57.3

Q ss_pred             CceeeeEECCCCcEEEEEeecCCCeEEeeCCCCCHHHHHHHHHHHHHHhhCCCCCCCCCcc
Q 039976          190 KLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDRAEDAALAYDREAFKLRGENARLNFPEL  250 (438)
Q Consensus       190 S~YRGVR~R~~GKW~AeIr~p~~gKRiwLGTFdTaEEAArAYDrAAiklrG~~A~lNFP~~  250 (438)
                      |+||||+++++|||+|+|+++..++++|||+|+|+||||+|||+++++++|.++.+|||++
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            6899999888999999999855599999999999999999999999999999999999963

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>PHA00280 putative NHN endonuclease

Probab=99.36  E-value=1.7e-12  Score=114.47  Aligned_cols=59  Identities=20%  Similarity=0.278  Sum_probs=52.6

Q ss_pred             CCCCCCCceeeeEE-CCCCcEEEEEeecCCCeEEeeCCCCCHHHHHHHHHHHHHHhhCCCCCC
Q 039976          184 QPLNTTKLYRGVRQ-RHWGKWVAEIRLPRNRTRLWLGTFDRAEDAALAYDREAFKLRGENARL  245 (438)
Q Consensus       184 ~p~nnsS~YRGVR~-R~~GKW~AeIr~p~~gKRiwLGTFdTaEEAArAYDrAAiklrG~~A~l  245 (438)
                      .+++|+|+|+||++ +..|||+|+|++  +||+++||.|+|+|+|+.||+ ++.+++|++|+.
T Consensus        61 ~~~~N~SG~kGV~~~k~~~kw~A~I~~--~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~~  120 (121)
T PHA00280         61 TPKSNTSGLKGLSWSKEREMWRGTVTA--EGKQHNFRSRDLLEVVAWIYR-TRRELHGQFARF  120 (121)
T ss_pred             CCCCCCCCCCeeEEecCCCeEEEEEEE--CCEEEEcCCCCCHHHHHHHHH-HHHHHhhccccC
Confidence            45678999999975 457999999996  999999999999999999997 788999999863

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.05  E-value=3.3e-10  Score=84.77  Aligned_cols=52  Identities=37%  Similarity=0.527  Sum_probs=44.9

Q ss_pred             CceeeeEECC-CCcEEEEEeecC-C--CeEEeeCCCCCHHHHHHHHHHHHHHhhCC
Q 039976          190 KLYRGVRQRH-WGKWVAEIRLPR-N--RTRLWLGTFDRAEDAALAYDREAFKLRGE  241 (438)
Q Consensus       190 S~YRGVR~R~-~GKW~AeIr~p~-~--gKRiwLGTFdTaEEAArAYDrAAiklrG~  241 (438)
                      |+|+||++.+ .++|+|.|++.. +  +++++||.|++++||++||+.++++++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            6899997554 899999999842 2  49999999999999999999999999875

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	438
2gcc_A	70	Solution Structure Of The Gcc-Box Binding Domain, N		1e-16
1gcc_A	63	Solution Nmr Structure Of The Complex Of Gcc-Box Bi		3e-16

>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, Minimized Mean Structure Length = 70

Iteration: 1
 Score = 84.0 bits (206), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 42/60 (70%), Positives = 48/60 (80%), Gaps = 1/60 (1%)
Query: 190 KLYRGVRQRHWGKWVAEIRLP-RNRTRLWLGTFDRAEDAALAYDREAFKLRGENARLNFP 248
           K YRGVRQR WGK+ AEIR P +N  R+WLGTF+ AEDAALAYDR AF++RG  A LNFP
Sbjct: 4   KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 63

>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding Domain Of Aterf1 And Gcc-Box Dna, Minimized Average Structure Length = 63

Iteration: 1
 Score = 83.2 bits (204), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 42/60 (70%), Positives = 48/60 (80%), Gaps = 1/60 (1%)
Query: 190 KLYRGVRQRHWGKWVAEIRLP-RNRTRLWLGTFDRAEDAALAYDREAFKLRGENARLNFP 248
           K YRGVRQR WGK+ AEIR P +N  R+WLGTF+ AEDAALAYDR AF++RG  A LNFP
Sbjct: 1   KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	438
1gcc_A	63	Ethylene responsive element binding factor 1; tran	3e-33

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score =  118 bits (298), Expect = 3e-33
 Identities = 42/61 (68%), Positives = 48/61 (78%), Gaps = 1/61 (1%)

Query: 190 KLYRGVRQRHWGKWVAEIRLP-RNRTRLWLGTFDRAEDAALAYDREAFKLRGENARLNFP 248
           K YRGVRQR WGK+ AEIR P +N  R+WLGTF+ AEDAALAYDR AF++RG  A LNFP
Sbjct: 1   KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

Query: 249 E 249
            
Sbjct: 61  L 61

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	438
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.89

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.89  E-value=5.4e-24  Score=165.89  Aligned_cols=61  Identities=69%  Similarity=1.148  Sum_probs=57.5

Q ss_pred             CceeeeEECCCCcEEEEEeecC-CCeEEeeCCCCCHHHHHHHHHHHHHHhhCCCCCCCCCcc
Q 039976          190 KLYRGVRQRHWGKWVAEIRLPR-NRTRLWLGTFDRAEDAALAYDREAFKLRGENARLNFPEL  250 (438)
Q Consensus       190 S~YRGVR~R~~GKW~AeIr~p~-~gKRiwLGTFdTaEEAArAYDrAAiklrG~~A~lNFP~~  250 (438)
                      .+||||++++||||+|+|+++. +|+++|||||+|+||||+|||.|+++++|.++++|||++
T Consensus         1 ~~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~   62 (63)
T 1gcc_A            1 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CCcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence            3799999989999999999986 479999999999999999999999999999999999975

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	438
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	6e-30

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  108 bits (272), Expect = 6e-30
 Identities = 42/61 (68%), Positives = 48/61 (78%), Gaps = 1/61 (1%)

Query: 190 KLYRGVRQRHWGKWVAEIRLP-RNRTRLWLGTFDRAEDAALAYDREAFKLRGENARLNFP 248
           K YRGVRQR WGK+ AEIR P +N  R+WLGTF+ AEDAALAYDR AF++RG  A LNFP
Sbjct: 1   KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

Query: 249 E 249
            
Sbjct: 61  L 61

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	438
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.89

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.89  E-value=4.1e-24  Score=165.64  Aligned_cols=60  Identities=68%  Similarity=1.167  Sum_probs=56.5

Q ss_pred             ceeeeEECCCCcEEEEEeec-CCCeEEeeCCCCCHHHHHHHHHHHHHHhhCCCCCCCCCcc
Q 039976          191 LYRGVRQRHWGKWVAEIRLP-RNRTRLWLGTFDRAEDAALAYDREAFKLRGENARLNFPEL  250 (438)
Q Consensus       191 ~YRGVR~R~~GKW~AeIr~p-~~gKRiwLGTFdTaEEAArAYDrAAiklrG~~A~lNFP~~  250 (438)
                      +||||+++++|||+|+|+++ .+++++|||+|+|+||||+|||+||++++|.++.+|||..
T Consensus         2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~   62 (63)
T d1gcca_           2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCcc
Confidence            69999998899999999987 5679999999999999999999999999999999999974