Citrus Sinensis ID: 040035

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------23

MFGTVFNYICMRLLGEGPDGGENNACARARKWILDRGGAMGILGVYDWSGCNPMPPEFWKIPSFLPISPGKLNCYCRVTYMPMSYLYGKRFVGPITPLILQLREEIYTQPYTDIDWSKMRHFCAKEDIFFPHTTVQNLLWDTLYNVVEPILNRWPLNKLREKSLEIAMNHIHYEDEASRYMTIECVEKPLNMLCCWIEDPNSDYFKKHLPRIGEYLWVGEDGMKVQVR

cEEEHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccEEEccccccEEEEEccccccccccHHHHHHHHHHHcccccccHHHccccccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccccEEcccccccccEEEEccccccHHHHHHHccccccEEEccccccEEcc

ccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccEEEEEEEEEcccccccccHHEEcccccccccccEEEEEEEEEccHHHHHcccccccccHHHHHHHHHHcccccccccHHHHHHHHcHHHcccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcHcccccEEEEEccHHHHHHHHHHHHcccccHHHHHHHHHcccHEEEEccccEEEEc

MFGTVFNYICMRLlgegpdggennACARARKWILdrggamgilgvydwsgcnpmppefwkipsflpispgklncycrvtympmsylygkrfvgpitpLILQLREEiytqpytdidwskmrhfcakediffphttvQNLLWDTLYNVVEpilnrwplnklREKSLEIAMNHIhyedeasrymtiecvekplnmlccwiedpnsdyfkkhlprigeylwvgedgmkvqvr

**GTVFNYICMRLLGEGPDGGENNACARARKWILDRGGAMGILGVYDWSGCNPMPPEFWKIPSFLPISPGKLNCYCRVTYMPMSYLYGKRFVGPITPLILQLREEIYTQPYTDIDWSKMRHFCAKEDIFFPHTTVQNLLWDTLYNVVEPILNRWPLNKLREKSLEIAMNHIHYEDEASRYMTIECVEKPLNMLCCWIEDPNSDYFKKHLPRIGEYLWVGE********

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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		228	2.2.26 [Sep-21-2011]
E7DN63		761	Beta-amyrin synthase OS=S	N/A	no	0.991	0.296	0.682	1e-96
Q8W3Z1		779	Beta-amyrin synthase OS=B	N/A	no	0.991	0.290	0.670	3e-96
O82140		763	Beta-Amyrin Synthase 1 OS	N/A	no	0.991	0.296	0.677	1e-95
Q2XPU7		769	Lupeol synthase OS=Ricinu	N/A	no	0.991	0.293	0.673	2e-95
E2IUA9		765	Lupeol synthase OS=Kalanc	N/A	no	0.991	0.295	0.675	2e-95
O82146		761	Beta-Amyrin Synthase 2 OS	N/A	no	0.991	0.296	0.669	3e-95
Q9MB42		765	Beta-amyrin synthase OS=G	N/A	no	0.991	0.295	0.662	2e-94
E7DN64		763	Delta-amyrin synthase OS=	N/A	no	0.991	0.296	0.656	4e-94
E2IUA7		767	Glutinol synthase OS=Kala	N/A	no	0.991	0.294	0.666	6e-94
E2IUA6		779	Taraxerol synthase OS=Kal	N/A	no	0.991	0.290	0.658	2e-93

>sp\|E7DN63\|BAMS_SOLLC Beta-amyrin synthase OS=Solanum lycopersicum GN=TTS1 PE=1 SV=1	Back alignment and function desciption

 Score =  352 bits (903), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 161/236 (68%), Positives = 188/236 (79%), Gaps = 10/236 (4%)

Query: 1   MFGTVFNYICMRLLGEGPDGGENNACARARKWILDRGGA----------MGILGVYDWSG 50
           MF T  +YICMR+LGEGPDGG NNACARARKWILD G            + ILGV++W G
Sbjct: 175 MFCTALSYICMRILGEGPDGGVNNACARARKWILDHGSVTAIPSWGKTWLSILGVFEWIG 234

Query: 51  CNPMPPEFWKIPSFLPISPGKLNCYCRVTYMPMSYLYGKRFVGPITPLILQLREEIYTQP 110
            NPMPPEFW +PSFLP+ P K+ CYCR+ YMPMSYLYGKRFVGPITPLILQLREE+Y +P
Sbjct: 235 TNPMPPEFWILPSFLPVHPAKMWCYCRMVYMPMSYLYGKRFVGPITPLILQLREELYDRP 294

Query: 111 YTDIDWSKMRHFCAKEDIFFPHTTVQNLLWDTLYNVVEPILNRWPLNKLREKSLEIAMNH 170
           Y +I+W K+RH CAKED+++PH  VQ+L+WD+LY   EP+L RWP NKLR K+LE+ M H
Sbjct: 295 YDEINWKKVRHVCAKEDLYYPHPLVQDLMWDSLYICTEPLLTRWPFNKLRNKALEVTMKH 354

Query: 171 IHYEDEASRYMTIECVEKPLNMLCCWIEDPNSDYFKKHLPRIGEYLWVGEDGMKVQ 226
           IHYEDE SRY+TI CVEK L ML CW+EDPN DYFKKHL RI +YLWV EDGMK+Q
Sbjct: 355 IHYEDENSRYITIGCVEKVLCMLACWVEDPNGDYFKKHLARIPDYLWVAEDGMKMQ 410

Oxidosqualene cyclase converting oxidosqualene into beta-amyrin, generating five rings and eight asymmetric centers in a single transformation.
Solanum lycopersicum (taxid: 4081)
EC: 5EC: .EC: 4EC: .EC: 9EC: 9EC: .EC: 3EC: 9

>sp\|Q8W3Z1\|BAMS_BETPL Beta-amyrin synthase OS=Betula platyphylla GN=OSCBPY PE=1 SV=1	Back alignment and function description

>sp\|O82140\|BAMS1_PANGI Beta-Amyrin Synthase 1 OS=Panax ginseng GN=OSCPNY1 PE=1 SV=1	Back alignment and function description

>sp\|Q2XPU7\|LUPS_RICCO Lupeol synthase OS=Ricinus communis PE=1 SV=1	Back alignment and function description

>sp\|E2IUA9\|LUPS_KALDA Lupeol synthase OS=Kalanchoe daigremontiana PE=1 SV=1	Back alignment and function description

>sp\|O82146\|BAMS2_PANGI Beta-Amyrin Synthase 2 OS=Panax ginseng GN=OSCPNY2 PE=2 SV=1	Back alignment and function description

>sp\|Q9MB42\|BAMS_GLYGL Beta-amyrin synthase OS=Glycyrrhiza glabra GN=GgbAS1 PE=1 SV=1	Back alignment and function description

>sp\|E7DN64\|DAMS_SOLLC Delta-amyrin synthase OS=Solanum lycopersicum GN=TTS2 PE=1 SV=1	Back alignment and function description

>sp\|E2IUA7\|GLUTS_KALDA Glutinol synthase OS=Kalanchoe daigremontiana PE=1 SV=1	Back alignment and function description

>sp\|E2IUA6\|TARS_KALDA Taraxerol synthase OS=Kalanchoe daigremontiana PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		228
300431227		763	beta-amyrin synthase [Aralia elata]	0.991	0.296	0.682	2e-95
350538549		761	beta-amyrin synthase [Solanum lycopersic	0.991	0.296	0.682	6e-95
392621787		763	lupeol synthase [Eleutherococcus trifoli	0.991	0.296	0.673	9e-95
75248718		779	RecName: Full=Beta-amyrin synthase gi\|18	0.991	0.290	0.670	2e-94
83016474		762	beta-amyrin synthase [Lotus japonicus]	0.991	0.296	0.679	4e-94
28194506		750	putative beta-amyrin synthase [Lotus jap	0.991	0.301	0.675	7e-94
75220214		763	RecName: Full=Beta-Amyrin Synthase 1 gi\|	0.991	0.296	0.677	8e-94
122210891		769	RecName: Full=Lupeol synthase gi\|8246880	0.991	0.293	0.673	9e-94
224105317		707	predicted protein [Populus trichocarpa]	0.991	0.319	0.652	1e-93
116292146		761	multifunctional triterpene synthase [Kan	0.991	0.296	0.669	1e-93

>gi\|300431227\|gb\|ADK12003.1\| beta-amyrin synthase [Aralia elata]	Back alignment and taxonomy information

 Score =  353 bits (907), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 161/236 (68%), Positives = 187/236 (79%), Gaps = 10/236 (4%)

Query: 1   MFGTVFNYICMRLLGEGPDGGENNACARARKWILDRGGA----------MGILGVYDWSG 50
           MF T  +YICMR+LGEGPDGG NNAC R RKWILD G            + ILGVY+W+G
Sbjct: 177 MFCTTLSYICMRILGEGPDGGVNNACVRGRKWILDHGSVTAIPSWGKTWLSILGVYEWTG 236

Query: 51  CNPMPPEFWKIPSFLPISPGKLNCYCRVTYMPMSYLYGKRFVGPITPLILQLREEIYTQP 110
            NPMPPEFW +PSFLP+ P K+ CYCR+ YMPMSYLYGKRFVGPITPLILQLREE+Y QP
Sbjct: 237 SNPMPPEFWILPSFLPMHPAKMWCYCRMVYMPMSYLYGKRFVGPITPLILQLREELYAQP 296

Query: 111 YTDIDWSKMRHFCAKEDIFFPHTTVQNLLWDTLYNVVEPILNRWPLNKLREKSLEIAMNH 170
           Y +I+W K RH CAKEDI++PH  +Q+LLWD+LY + EP+L RWP NKLREK+L+  M H
Sbjct: 297 YNEINWRKTRHVCAKEDIYYPHPLIQDLLWDSLYVLTEPLLTRWPFNKLREKALQTTMKH 356

Query: 171 IHYEDEASRYMTIECVEKPLNMLCCWIEDPNSDYFKKHLPRIGEYLWVGEDGMKVQ 226
           IHYEDE SRY+TI CVEK L ML CW+EDPN DYFKKHL RI +Y+WV EDGMK+Q
Sbjct: 357 IHYEDENSRYITIGCVEKVLCMLACWVEDPNGDYFKKHLARIPDYIWVAEDGMKMQ 412

Source: Aralia elata

Species: Aralia elata

Genus: Aralia

Family: Araliaceae

Order: Apiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|350538549\|ref\|NP_001234604.1\| beta-amyrin synthase [Solanum lycopersicum] gi\|357580425\|sp\|E7DN63.1\|BAMS_SOLLC RecName: Full=Beta-amyrin synthase; AltName: Full=Triterpenoid synthase 1; Short=SlTTS1 gi\|315613943\|gb\|ADU52574.1\| beta-amyrin synthase [Solanum lycopersicum]	Back alignment and taxonomy information

>gi\|392621787\|gb\|AFM82492.1\| lupeol synthase [Eleutherococcus trifoliatus]	Back alignment and taxonomy information

>gi\|75248718\|sp\|Q8W3Z1.1\|BAMS_BETPL RecName: Full=Beta-amyrin synthase gi\|18147596\|dbj\|BAB83088.1\| beta-amyrin synthase [Betula platyphylla]	Back alignment and taxonomy information

>gi\|83016474\|dbj\|BAE53429.1\| beta-amyrin synthase [Lotus japonicus]	Back alignment and taxonomy information

>gi\|28194506\|gb\|AAO33579.1\|AF478454_1 putative beta-amyrin synthase [Lotus japonicus]	Back alignment and taxonomy information

>gi\|75220214\|sp\|O82140.1\|BAMS1_PANGI RecName: Full=Beta-Amyrin Synthase 1 gi\|3688600\|dbj\|BAA33461.1\| beta-Amyrin Synthase [Panax ginseng]	Back alignment and taxonomy information

>gi\|122210891\|sp\|Q2XPU7.1\|LUPS_RICCO RecName: Full=Lupeol synthase gi\|82468803\|gb\|ABB76766.1\| lupeol synthase [Ricinus communis]	Back alignment and taxonomy information

>gi\|224105317\|ref\|XP_002333832.1\| predicted protein [Populus trichocarpa] gi\|222838872\|gb\|EEE77223.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|116292146\|dbj\|BAF35580.1\| multifunctional triterpene synthase [Kandelia candel]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		228
UNIPROTKB\|Q8W3Z1		779	OSCBPY "Beta-amyrin synthase"	0.991	0.290	0.670	1.1e-92
UNIPROTKB\|E2IUA9		765	E2IUA9 "Lupeol synthase" [Kala	0.991	0.295	0.675	8.1e-92
UNIPROTKB\|Q2XPU7		769	Q2XPU7 "Lupeol synthase" [Rici	0.991	0.293	0.673	7.3e-91
UNIPROTKB\|E2IUA7		767	E2IUA7 "Glutinol synthase" [Ka	0.991	0.294	0.666	1.9e-90
UNIPROTKB\|A8CDT2		759	BAS "Beta-amyrin synthase" [Br	0.991	0.297	0.662	2.5e-90
UNIPROTKB\|E2IUA6		779	E2IUA6 "Taraxerol synthase" [K	0.991	0.290	0.658	1.4e-89
UNIPROTKB\|E2IUA8		767	E2IUA8 "Friedelin synthase" [K	0.991	0.294	0.654	7.5e-89
UNIPROTKB\|F8WQD0		761	SHS1 "Shionone synthase" [Aste	0.991	0.296	0.661	1.6e-88
TAIR\|locus:2207315		759	BAS "beta-amyrin synthase" [Ar	0.991	0.297	0.654	8.6e-88
TAIR\|locus:504956092		769	CAMS1 "AT1G78955" [Arabidopsis	0.991	0.293	0.662	1.1e-87

UNIPROTKB\|Q8W3Z1 OSCBPY "Beta-amyrin synthase" [Betula platyphylla (taxid:78630)]	Back alignment and assigned GO terms

 Score = 923 (330.0 bits), Expect = 1.1e-92, P = 1.1e-92
 Identities = 159/237 (67%), Positives = 191/237 (80%)

Query:     1 MFGTVFNYICMRLLGEGPDGGENNACARARKWILDRGGA----------MGILGVYDWSG 50
             MF T  +YICMR+LGEGPDGG++NACARARKWILD GG           + ILG+++W G
Sbjct:   175 MFCTALSYICMRILGEGPDGGQDNACARARKWILDHGGVTHMPSWGKTWLSILGIFEWIG 234

Query:    51 CNPMPPEFWKIPSFLPISPGKLNCYCRVTYMPMSYLYGKRFVGPITPLILQLREEIYTQP 110
              NPMPPEFW +PSFLP+ P K+ CYCR+ YMPMSYLYGKRFVGPITPLILQLREE+YTQP
Sbjct:   235 SNPMPPEFWILPSFLPMHPAKMWCYCRMVYMPMSYLYGKRFVGPITPLILQLREELYTQP 294

Query:   111 YTDIDWSKMRHFCAKEDIFFPHTTVQNLLWDTLYNVVEPILNRWPLNKL-REKSLEIAMN 169
             Y  ++W K+RH CAKEDI++PH  +Q+LLWD+LY   EP+L RWP NKL REK+L++ M 
Sbjct:   295 YHQVNWKKVRHLCAKEDIYYPHPLIQDLLWDSLYIFTEPLLTRWPFNKLVREKALQVTMK 354

Query:   170 HIHYEDEASRYMTIECVEKPLNMLCCWIEDPNSDYFKKHLPRIGEYLWVGEDGMKVQ 226
             HIHYEDE SRY+TI CVEK L ML CW+EDPN DYFKKH+ RI +Y+WV EDG+K+Q
Sbjct:   355 HIHYEDENSRYITIGCVEKVLCMLACWVEDPNGDYFKKHIARIPDYIWVAEDGIKMQ 411

GO:0019745 "pentacyclic triterpenoid biosynthetic process" evidence=IDA

GO:0042300 "beta-amyrin synthase activity" evidence=IDA

UNIPROTKB\|E2IUA9 E2IUA9 "Lupeol synthase" [Kalanchoe daigremontiana (taxid:23013)]	Back alignment and assigned GO terms

UNIPROTKB\|Q2XPU7 Q2XPU7 "Lupeol synthase" [Ricinus communis (taxid:3988)]	Back alignment and assigned GO terms

UNIPROTKB\|E2IUA7 E2IUA7 "Glutinol synthase" [Kalanchoe daigremontiana (taxid:23013)]	Back alignment and assigned GO terms

UNIPROTKB\|A8CDT2 BAS "Beta-amyrin synthase" [Bruguiera gymnorhiza (taxid:39984)]	Back alignment and assigned GO terms

UNIPROTKB\|E2IUA6 E2IUA6 "Taraxerol synthase" [Kalanchoe daigremontiana (taxid:23013)]	Back alignment and assigned GO terms

UNIPROTKB\|E2IUA8 E2IUA8 "Friedelin synthase" [Kalanchoe daigremontiana (taxid:23013)]	Back alignment and assigned GO terms

UNIPROTKB\|F8WQD0 SHS1 "Shionone synthase" [Aster tataricus (taxid:588669)]	Back alignment and assigned GO terms

TAIR\|locus:2207315 BAS "beta-amyrin synthase" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:504956092 CAMS1 "AT1G78955" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.4.99	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		228
PLN02993		763	PLN02993, PLN02993, lupeol synthase	1e-130
PLN03012		759	PLN03012, PLN03012, Camelliol C synthase	1e-125
cd02892		634	cd02892, SQCY_1, Squalene cyclase (SQCY) domain su	6e-89
TIGR01787		621	TIGR01787, squalene_cyclas, squalene/oxidosqualene	5e-70
TIGR03463		634	TIGR03463, osq_cycl, 2,3-oxidosqualene cyclase	2e-48
TIGR01507		635	TIGR01507, hopene_cyclase, squalene-hopene cyclase	2e-05
COG1657		517	COG1657, SqhC, Squalene cyclase [Lipid metabolism]	0.003

>gnl\|CDD\|215537 PLN02993, PLN02993, lupeol synthase	Back alignment and domain information

 Score =  384 bits (987), Expect = e-130
 Identities = 158/237 (66%), Positives = 187/237 (78%), Gaps = 11/237 (4%)

Query: 1   MFGTVFNYICMRLLGEGPDGGENNACARARKWILDRGGA----------MGILGVYDWSG 50
           MF TV NYIC+R+LGEGP+GG  NAC RAR+WILD GG           + ILG+YDWSG
Sbjct: 176 MFCTVLNYICLRMLGEGPNGGRENACKRARQWILDHGGVTYIPSWGKFWLSILGIYDWSG 235

Query: 51  CNPMPPEFWKIPSFLPISPGKLNCYCRVTYMPMSYLYGKRFVGPITPLILQLREEIYTQP 110
            NPMPPE W +PSFLPI  GK  CY R+ YMPMSYLYGKRFVGPITPLI+ LREE++ QP
Sbjct: 236 TNPMPPEIWLLPSFLPIHLGKTLCYTRMVYMPMSYLYGKRFVGPITPLIMLLREELHLQP 295

Query: 111 YTDIDWSKMRHFCAKEDIFFPHTTVQNLLWDTLYNVVEPILNRWPLNKL-REKSLEIAMN 169
           Y +I+W+K R  CAKED+++PH  VQ+L+WDTL+N VEP L RWPLNKL REK+L++AM 
Sbjct: 296 YEEINWNKARRLCAKEDMYYPHPLVQDLIWDTLHNFVEPFLTRWPLNKLVREKALQVAMK 355

Query: 170 HIHYEDEASRYMTIECVEKPLNMLCCWIEDPNSDYFKKHLPRIGEYLWVGEDGMKVQ 226
           HIHYEDE S Y+TI CVEK L ML CWIE+PN D+FKKHL RI +Y+WV EDGMK+Q
Sbjct: 356 HIHYEDENSHYITIGCVEKVLCMLACWIENPNGDHFKKHLARIPDYMWVAEDGMKMQ 412

Length = 763

>gnl\|CDD\|166653 PLN03012, PLN03012, Camelliol C synthase	Back alignment and domain information

>gnl\|CDD\|239222 cd02892, SQCY_1, Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold	Back alignment and domain information

>gnl\|CDD\|233578 TIGR01787, squalene_cyclas, squalene/oxidosqualene cyclases	Back alignment and domain information

>gnl\|CDD\|234220 TIGR03463, osq_cycl, 2,3-oxidosqualene cyclase	Back alignment and domain information

>gnl\|CDD\|233442 TIGR01507, hopene_cyclase, squalene-hopene cyclase	Back alignment and domain information

>gnl\|CDD\|224571 COG1657, SqhC, Squalene cyclase [Lipid metabolism]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		228
PLN03012		759	Camelliol C synthase	100.0
PLN02993		763	lupeol synthase	100.0
KOG0497		760	consensus Oxidosqualene-lanosterol cyclase and rel	100.0
TIGR03463		634	osq_cycl 2,3-oxidosqualene cyclase. This model ide	100.0
cd02892		634	SQCY_1 Squalene cyclase (SQCY) domain subgroup 1;	100.0
TIGR01787		621	squalene_cyclas squalene/oxidosqualene cyclases. T	100.0
TIGR01507		635	hopene_cyclase squalene-hopene cyclase. SHC is an	100.0
COG1657		517	SqhC Squalene cyclase [Lipid metabolism]	99.76
KOG0497		760	consensus Oxidosqualene-lanosterol cyclase and rel	95.46
PF13243		109	Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A	92.77
COG1657		517	SqhC Squalene cyclase [Lipid metabolism]	92.61
PLN03012		759	Camelliol C synthase	83.09
cd02897		292	A2M_2 Proteins similar to alpha2-macroglobulin (al	80.87

>PLN03012 Camelliol C synthase	Back alignment and domain information

Probab=100.00  E-value=2.8e-75  Score=572.19  Aligned_cols=228  Identities=69%  Similarity=1.353  Sum_probs=219.9

Q ss_pred             CchhhHHHHHHHHhCCCCCCCCcHHHHHHHHHHHhcCChhh----------hhcccccCCCCCCCCccccCCCCCCCCCC
Q 040035            1 MFGTVFNYICMRLLGEGPDGGENNACARARKWILDRGGAMG----------ILGVYDWSGCNPMPPEFWKIPSFLPISPG   70 (228)
Q Consensus         1 ~~~Tv~aY~ALrllG~~~d~~~~p~m~rAR~~Il~~GGa~~----------llG~y~W~~v~~lPpEl~LLP~w~P~~~~   70 (228)
                      |||||+||+||||+|+++|++++|+|+|||+|||++|||++          +||+|||+|+|+|||||||||+|+||||+
T Consensus       176 ~~~Tv~~YvaLRllG~~~d~~~~~~m~rAR~~Il~~GGa~~~p~w~K~wLA~lG~y~W~g~np~PpElwLLP~~~P~hp~  255 (759)
T PLN03012        176 MFCTTLNYICMRILGEGPDGGHDNACGRARDWILDHGGATYIPSWGKTWLSILGVFDWSGSNPMPPEFWILPSFFPIHPA  255 (759)
T ss_pred             chhHHHHHHHHHHcCCCCCCCCcHHHHHHHHHHHHcCCcccCchHHHHHHHHcCccccCCCCCCChhHHHccCcCCccHH
Confidence            79999999999999999997645899999999999999999          88999999999999999999999999999


Q ss_pred             CcchhchhhhhhhhhhhcCcccccCCchhHhHHHhhccCCCCCCCccccccccCCCCCCCCCchhHHHHHHHHHHHHHhh
Q 040035           71 KLNCYCRVTYMPMSYLYGKRFVGPITPLILQLREEIYTQPYTDIDWSKMRHFCAKEDIFFPHTTVQNLLWDTLYNVVEPI  150 (228)
Q Consensus        71 ~~~~~~R~v~~Pm~~l~~~r~~~~~~~~~~~lr~EL~~~p~~~i~w~~~r~~~~~~d~~~p~~~~~~~~~~~l~~~~~~~  150 (228)
                      +||||||+||+||+|||+|||++|++|++.+||+|||++||++|||.++|+.||++|+|+||+++++++|..|+.++|++
T Consensus       256 ~~~~~~R~vy~Pmsyly~~R~~~~~~~~i~~lr~ELy~~py~~i~w~~~r~~~a~~D~y~p~~~~~~~~~~~l~~~~~~~  335 (759)
T PLN03012        256 KMWCYCRLVYLPMSYLYGKRFVGPISPLILQLREEIYLQPYAEINWMKARHLCAKEDAYCPHPLIQDLIWDCLYIFAEPF  335 (759)
T ss_pred             HHHHHHHHHHHHHHHHhcCCccccCCchhhhhHHHhCCCCccccChhhhccccccccccCCchHHHhhhHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hccCCC-hHHHHHHHHHHHHHHHHHhcCCCccccccccchhhhhhhhccCCCCHHHHHHHhhhccceEecCCceeeeeC
Q 040035          151 LNRWPL-NKLREKSLEIAMNHIHYEDEASRYMTIECVEKPLNMLCCWIEDPNSDYFKKHLPRIGEYLWVGEDGMKVQVR  228 (228)
Q Consensus       151 ~~~~~~-~~lR~~Al~~a~~~i~~~~e~t~y~~lg~i~~~~nml~~~~~~p~sp~~~~~~~~l~~~lw~~~dG~~~q~~  228 (228)
                      +..++. ++||++|+++|++||+.|+|+|.|+|++||++++|||+||+++||||+||+|++||+||+|+++|||+||+|
T Consensus       336 l~~~~~~~~LR~~Al~~a~~~I~~ed~~t~y~~i~pv~~~l~ml~~~~~~p~~~~~k~hl~ri~d~lw~~~dGm~~q~~  414 (759)
T PLN03012        336 LACWPFNKLLREKALGLAMKHIHYEDENSRYITIGCVEKALCMLACWVEDPNGDHFKKHLLRISDYLWIAEDGMKMQSF  414 (759)
T ss_pred             hhcccccHHHHHHHHHHHHHHHHhcCCCCCEeeHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcEEEeCCceEEcCC
Confidence            765543 379999999999999999999999999999999999999999999999999999999999999999999998

>PLN02993 lupeol synthase	Back alignment and domain information

>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]	Back alignment and domain information

>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase	Back alignment and domain information

>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold	Back alignment and domain information

>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases	Back alignment and domain information

>TIGR01507 hopene_cyclase squalene-hopene cyclase	Back alignment and domain information

>COG1657 SqhC Squalene cyclase [Lipid metabolism]	Back alignment and domain information

>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]	Back alignment and domain information

>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A	Back alignment and domain information

>COG1657 SqhC Squalene cyclase [Lipid metabolism]	Back alignment and domain information

>PLN03012 Camelliol C synthase	Back alignment and domain information

>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M)	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		228
1w6j_A		732	Structure Of Human Osc In Complex With Ro 48-8071 L		1e-38
1w6k_A		732	Structure Of Human Osc In Complex With Lanosterol L		1e-38

>pdb|1W6J|A Chain A, Structure Of Human Osc In Complex With Ro 48-8071 Length = 732

Back alignment and structure

Iteration: 1

Score = 156 bits (394), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 86/240 (35%), Positives = 132/240 (55%), Gaps = 25/240 (10%) Query: 1 MFGTVFNYICMRLLGEGPDGGENNACARARKWILDRGGAMGI----------LGVYDWSG 50 +FGT NY+ +R+LG GPD + RAR + +GGA+ I L VY W G Sbjct: 151 VFGTALNYVSLRILGVGPD---DPDLVRARNILHKKGGAVAIPSWGKFWLAVLNVYSWEG 207 Query: 51 CNPMPPEFWKIPSFLPISPGKLNCYCRVTYMPMSYLYGKRFVGPITPLILQLREEIYTQP 110 N + PE W P + P P L C+CR Y+PMSY Y R PL+ LR+E+Y + Sbjct: 208 LNTLFPEMWLFPDWAPAHPSTLWCHCRQVYLPMSYCYAVRLSAAEDPLVQSLRQELYVED 267 Query: 111 YTDIDWSKMRHFCAKEDIFFPHTTVQNLLWDTLYNVVEPILNRWPLN---KLREKSLEIA 167 + IDW R+ A ++++ PH+ W L VV +LN + + LR+++++ Sbjct: 268 FASIDWLAQRNNVAPDELYTPHS------W--LLRVVYALLNLYEHHHSAHLRQRAVQKL 319 Query: 168 MNHIHYEDEASRYMTIECVEKPLNMLCCW-IEDPNSDYFKKHLPRIGEYLWVGEDGMKVQ 226 HI +D ++ ++I + K +NML W ++ P S F++H+ RI +YLW+G DGMK+Q Sbjct: 320 YEHIVADDRFTKSISIGPISKTINMLVRWYVDGPASTAFQEHVSRIPDYLWMGLDGMKMQ 379

PyMOL of 1w6j

>pdb|1W6K|A Chain A, Structure Of Human Osc In Complex With Lanosterol Length = 732

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		228
1w6k_A		732	Lanosterol synthase; cyclase, cholesterol, monotop	2e-67
2sqc_A		631	Squalene-hopene cyclase; isomerase, triterpene cyc	2e-42

>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A* Length = 732	Back alignment and structure

 Score =  219 bits (559), Expect = 2e-67
 Identities = 80/238 (33%), Positives = 129/238 (54%), Gaps = 19/238 (7%)

Query: 1   MFGTVFNYICMRLLGEGPDGGENNACARARKWILDRGGA----------MGILGVYDWSG 50
           +FGT  NY+ +R+LG GPD   +    RAR  +  +GGA          + +L VY W G
Sbjct: 151 VFGTALNYVSLRILGVGPD---DPDLVRARNILHKKGGAVAIPSWGKFWLAVLNVYSWEG 207

Query: 51  CNPMPPEFWKIPSFLPISPGKLNCYCRVTYMPMSYLYGKRFVGPITPLILQLREEIYTQP 110
            N + PE W  P + P  P  L C+CR  Y+PMSY Y  R      PL+  LR+E+Y + 
Sbjct: 208 LNTLFPEMWLFPDWAPAHPSTLWCHCRQVYLPMSYCYAVRLSAAEDPLVQSLRQELYVED 267

Query: 111 YTDIDWSKMRHFCAKEDIFFPHTTVQNLLWDTLYNVVEPILNRWPLNKLREKSLEIAMNH 170
           +  IDW   R+  A ++++ PH+ +  +++  L      +        LR+++++    H
Sbjct: 268 FASIDWLAQRNNVAPDELYTPHSWLLRVVYALLN-----LYEHHHSAHLRQRAVQKLYEH 322

Query: 171 IHYEDEASRYMTIECVEKPLNMLCCW-IEDPNSDYFKKHLPRIGEYLWVGEDGMKVQV 227
           I  +D  ++ ++I  + K +NML  W ++ P S  F++H+ RI +YLW+G DGMK+Q 
Sbjct: 323 IVADDRFTKSISIGPISKTINMLVRWYVDGPASTAFQEHVSRIPDYLWMGLDGMKMQG 380

PyMOL of 1w6k

>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* Length = 631	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		228
1w6k_A		732	Lanosterol synthase; cyclase, cholesterol, monotop	100.0
2sqc_A		631	Squalene-hopene cyclase; isomerase, triterpene cyc	100.0

>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*	Back alignment and structure

Probab=100.00  E-value=5.3e-65  Score=502.17  Aligned_cols=220  Identities=37%  Similarity=0.779  Sum_probs=211.1

Q ss_pred             CchhhHHHHHHHHhCCCCCCCCcHHHHHHHHHHHhcCChhh----------hhcccccCCCCCCCCccccCCCCCCCCCC
Q 040035            1 MFGTVFNYICMRLLGEGPDGGENNACARARKWILDRGGAMG----------ILGVYDWSGCNPMPPEFWKIPSFLPISPG   70 (228)
Q Consensus         1 ~~~Tv~aY~ALrllG~~~d~~~~p~m~rAR~~Il~~GGa~~----------llG~y~W~~v~~lPpEl~LLP~w~P~~~~   70 (228)
                      ||+||+||+|||++|+++|+   |+|+|||+||+++|||++          +||+|+|+++|+|||||||||+||||||+
T Consensus       151 ~~~T~~~Y~aLrl~G~~~~~---~~~~~ar~~i~~~GG~~~~~~~~k~~La~~g~~~W~~~~~~PpE~~llP~~~p~~~~  227 (732)
T 1w6k_A          151 VFGTALNYVSLRILGVGPDD---PDLVRARNILHKKGGAVAIPSWGKFWLAVLNVYSWEGLNTLFPEMWLFPDWAPAHPS  227 (732)
T ss_dssp             HHHHHHHHHHHHHTTCCTTS---HHHHHHHHHHHHTTCGGGCCHHHHHHHHHTTSSCGGGSCCCCGGGGGSCTTSTTCGG
T ss_pred             HHHHHHHHHHHHHcCCCCCc---HHHHHHHHHHHHcCCcccCcHHHHHHHHHcCCCCcccCCCCCHHHHHccCcCCCCHH
Confidence            68999999999999999999   999999999999999999          88999999999999999999999999999


Q ss_pred             CcchhchhhhhhhhhhhcCcccccCCchhHhHHHhhccCCCCCCCccccccccCCCCCCCCCchhHHHHHHHHHHHHHhh
Q 040035           71 KLNCYCRVTYMPMSYLYGKRFVGPITPLILQLREEIYTQPYTDIDWSKMRHFCAKEDIFFPHTTVQNLLWDTLYNVVEPI  150 (228)
Q Consensus        71 ~~~~~~R~v~~Pm~~l~~~r~~~~~~~~~~~lr~EL~~~p~~~i~w~~~r~~~~~~d~~~p~~~~~~~~~~~l~~~~~~~  150 (228)
                      +||||||+||+||+|+++|||+++.+|.+.+||+|||++||++|+|.++|+.|+++|+|+|++++++.++..| +.+|++
T Consensus       228 ~~~~~~R~~~~p~~~l~~~r~~~~~~~~~~~lr~el~~~~~~~~~~~~~r~~~~~~d~~~p~~~~~~~~~~~l-~~~e~~  306 (732)
T 1w6k_A          228 TLWCHCRQVYLPMSYCYAVRLSAAEDPLVQSLRQELYVEDFASIDWLAQRNNVAPDELYTPHSWLLRVVYALL-NLYEHH  306 (732)
T ss_dssp             GSCHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHTTSCSSCGGGCCSGGGTTCCCGGGCSSCCCHHHHHHHHHH-HHHHHT
T ss_pred             HHHHHHHHHHHhHHHHhhcCCCCCCCcchhhHHHHhcCCCccccchhhhccccccccccCCHHHHHHHHHHHH-HHhhhc
Confidence            9999999999999999999999998999999999999999999999999999999999999999998888877 677765


Q ss_pred             hccCCChHHHHHHHHHHHHHHHHHhcCCCccccccccchhhhhhhhcc-CCCCHHHHHHHhhhccceEecCCceeeeeC
Q 040035          151 LNRWPLNKLREKSLEIAMNHIHYEDEASRYMTIECVEKPLNMLCCWIE-DPNSDYFKKHLPRIGEYLWVGEDGMKVQVR  228 (228)
Q Consensus       151 ~~~~~~~~lR~~Al~~a~~~i~~~~e~t~y~~lg~i~~~~nml~~~~~-~p~sp~~~~~~~~l~~~lw~~~dG~~~q~~  228 (228)
                      +    ++++|++|++++++||++|||+|||+|++|+++++||++||.+ +||||.|++|++++++|+|+.+|||++|+|
T Consensus       307 ~----~~~lr~~a~~~~~~~i~~~~~~~~~~~i~pv~~~l~~l~~~~~~G~~~~~~~~~l~~l~~~l~~~~dG~~~q~~  381 (732)
T 1w6k_A          307 H----SAHLRQRAVQKLYEHIVADDRFTKSISIGPISKTINMLVRWYVDGPASTAFQEHVSRIPDYLWMGLDGMKMQGT  381 (732)
T ss_dssp             C----CHHHHHHHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHCTTSHHHHHHHHTSGGGEEEETTEEEECSS
T ss_pred             C----cHHHHHHHHHHHHHHHHhhccCCCCcccchhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhheeCCCCceeCCC
Confidence            3    5789999999999999999999999999999999999999974 499999999999999999999999999987

PyMOL of 1w6k

>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		228
d1w6ka2		279	a.102.4.2 (A:100-378) Lanosterol synthase {Human (	7e-94
d2sqca2		271	a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alic	6e-48
d1w6ka1		448	a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {	2e-11

>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 279	Back information, alignment and structure


class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Lanosterol synthase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  274 bits (701), Expect = 7e-94
 Identities = 80/236 (33%), Positives = 128/236 (54%), Gaps = 19/236 (8%)

Query: 1   MFGTVFNYICMRLLGEGPDGGENNACARARKWILDRGGAMGI----------LGVYDWSG 50
           +FGT  NY+ +R+LG GPD   +    RAR  +  +GGA+ I          L VY W G
Sbjct: 52  VFGTALNYVSLRILGVGPD---DPDLVRARNILHKKGGAVAIPSWGKFWLAVLNVYSWEG 108

Query: 51  CNPMPPEFWKIPSFLPISPGKLNCYCRVTYMPMSYLYGKRFVGPITPLILQLREEIYTQP 110
            N + PE W  P + P  P  L C+CR  Y+PMSY Y  R      PL+  LR+E+Y + 
Sbjct: 109 LNTLFPEMWLFPDWAPAHPSTLWCHCRQVYLPMSYCYAVRLSAAEDPLVQSLRQELYVED 168

Query: 111 YTDIDWSKMRHFCAKEDIFFPHTTVQNLLWDTLYNVVEPILNRWPLNKLREKSLEIAMNH 170
           +  IDW   R+  A ++++ PH+ +  +++  L      +        LR+++++    H
Sbjct: 169 FASIDWLAQRNNVAPDELYTPHSWLLRVVYALLN-----LYEHHHSAHLRQRAVQKLYEH 223

Query: 171 IHYEDEASRYMTIECVEKPLNMLCCW-IEDPNSDYFKKHLPRIGEYLWVGEDGMKV 225
           I  +D  ++ ++I  + K +NML  W ++ P S  F++H+ RI +YLW+G DGMK+
Sbjct: 224 IVADDRFTKSISIGPISKTINMLVRWYVDGPASTAFQEHVSRIPDYLWMGLDGMKM 279

PyMOL of d1w6ka2

>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Length = 271	Back information, alignment and structure

>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 448	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		228
d1w6ka2		279	Lanosterol synthase {Human (Homo sapiens) [TaxId:	100.0
d2sqca2		271	Squalene-hopene cyclase {Alicyclobacillus acidocal	100.0
d1w6ka1		448	Lanosterol synthase {Human (Homo sapiens) [TaxId:	96.33
d2sqca1		352	Squalene-hopene cyclase {Alicyclobacillus acidocal	94.45
d1w6ka2		279	Lanosterol synthase {Human (Homo sapiens) [TaxId:	91.03
d2sqca2		271	Squalene-hopene cyclase {Alicyclobacillus acidocal	83.93

>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Lanosterol synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.4e-75  Score=513.20  Aligned_cols=217  Identities=37%  Similarity=0.807  Sum_probs=207.6

Q ss_pred             CchhhHHHHHHHHhCCCCCCCCcHHHHHHHHHHHhcCChhh----------hhcccccCCCCCCCCccccCCCCCCCCCC
Q 040035            1 MFGTVFNYICMRLLGEGPDGGENNACARARKWILDRGGAMG----------ILGVYDWSGCNPMPPEFWKIPSFLPISPG   70 (228)
Q Consensus         1 ~~~Tv~aY~ALrllG~~~d~~~~p~m~rAR~~Il~~GGa~~----------llG~y~W~~v~~lPpEl~LLP~w~P~~~~   70 (228)
                      ||+||+||+|||++|+++|+   |+|+|||+||+++||+++          +||+|||+++|+||||+||||+|||||++
T Consensus        52 i~~T~~ay~ALrl~G~~~~~---p~m~rAr~wI~~~GG~~~~~~~~k~~La~~g~~~W~~~~~~P~E~~lLP~w~P~~~~  128 (279)
T d1w6ka2          52 VFGTALNYVSLRILGVGPDD---PDLVRARNILHKKGGAVAIPSWGKFWLAVLNVYSWEGLNTLFPEMWLFPDWAPAHPS  128 (279)
T ss_dssp             HHHHHHHHHHHHHTTCCTTS---HHHHHHHHHHHHTTCGGGCCHHHHHHHHHTTSSCGGGSCCCCGGGGGSCTTSTTCGG
T ss_pred             HHHHHHHHHHHHHhCCCCCc---HHHHHHHHHHHhCCCccccchHHHHHHHHcCccccccCCCCCHHHHhccccCccchH
Confidence            58999999999999999999   999999999999999999          88999999999999999999999999999


Q ss_pred             CcchhchhhhhhhhhhhcCcccccCCchhHhHHHhhccCCCCCCCccccccccCCCCCCCCCchhHHHHHHHHHHHHHhh
Q 040035           71 KLNCYCRVTYMPMSYLYGKRFVGPITPLILQLREEIYTQPYTDIDWSKMRHFCAKEDIFFPHTTVQNLLWDTLYNVVEPI  150 (228)
Q Consensus        71 ~~~~~~R~v~~Pm~~l~~~r~~~~~~~~~~~lr~EL~~~p~~~i~w~~~r~~~~~~d~~~p~~~~~~~~~~~l~~~~~~~  150 (228)
                      +||||||+||+||+|++++||+++++|++.++|+|||++||++|||.+.|+.|+++|.|+|++++++.+...+ +.+++ 
T Consensus       129 ~~~~~~R~v~vPls~l~~~r~~~~~~p~~~~lr~el~~~p~~~i~~~~~r~~~~~~d~~~~~~~~~~~~d~~l-~~~e~-  206 (279)
T d1w6ka2         129 TLWCHCRQVYLPMSYCYAVRLSAAEDPLVQSLRQELYVEDFASIDWLAQRNNVAPDELYTPHSWLLRVVYALL-NLYEH-  206 (279)
T ss_dssp             GSCHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHTTSCSSCGGGCCSGGGTTCCCGGGCSSCCCHHHHHHHHHH-HHHHH-
T ss_pred             HhhhhhhhhhhhhHHHhhccccCCCCcHHHHHHHHhccCCccccccccccCccCccccCCCcHHHHHHHHHHH-HHhhc-
Confidence            9999999999999999999999999999999999999999999999999999999999999999888776666 45554 


Q ss_pred             hccCCChHHHHHHHHHHHHHHHHHhcCCCccccccccchhhhhhhh-ccCCCCHHHHHHHhhhccceEecCCceee
Q 040035          151 LNRWPLNKLREKSLEIAMNHIHYEDEASRYMTIECVEKPLNMLCCW-IEDPNSDYFKKHLPRIGEYLWVGEDGMKV  225 (228)
Q Consensus       151 ~~~~~~~~lR~~Al~~a~~~i~~~~e~t~y~~lg~i~~~~nml~~~-~~~p~sp~~~~~~~~l~~~lw~~~dG~~~  225 (228)
                         +++++||++|+++|++||++|||+|||+|+|||+|+||||+|| .++|||+.||+|++||.||+|++||||+|
T Consensus       207 ---~~~~~lR~~Al~~a~~~i~~ede~t~~~glg~i~~~lnml~~~~~e~p~s~~~k~hl~ri~dy~W~~edGm~m  279 (279)
T d1w6ka2         207 ---HHSAHLRQRAVQKLYEHIVADDRFTKSISIGPISKTINMLVRWYVDGPASTAFQEHVSRIPDYLWMGLDGMKM  279 (279)
T ss_dssp             ---TCCHHHHHHHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHCTTSHHHHHHHHTSGGGEEEETTEEEE
T ss_pred             ---cCcHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHccCCCcHHHHHHHHhcccceeECcccCCC
Confidence               4789999999999999999999999999999999999999999 57799999999999999999999999998

PyMOL of d1w6ka2

>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]}	Back information, alignment and structure

>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]}	Back information, alignment and structure

>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]}	Back information, alignment and structure