Citrus Sinensis ID: 040060

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-
ADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEPIPEAPTEVIGA
ccccccccEEEEEccccccccEEEEEEEccccccccccccccccEEEEEccccccHHHHHHcEEEEEEccccccEEEEEEEcEEEccHHHHccccccEEEEEEEEEEEEccccEEEEEEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEEcccccccccccEEEEccccccccccccccccccccccccccccc
ccccccccHHEcccccHccEEEcccEEEEcccccEEcccccccEEEEEEHHHccccHHHHHEEEEEEEEHcccccEEcccccccccHHHHHHHHHHHHHHHHHEEEEEccccEEEEEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcHHHHHHHHHHHHccccccccEEEEEEEEEccccccHHHHHHHHcccccccccEEcccccccccccccHEccc
adpfakkdwydikapscfrvrnvgkTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRaedvqgknvltnfwgmsftTDKLRSLVRKWHTLIEAYVDvkttdnftLRLFCIGFtkrlpnqvkrTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEkatssiyplqnvFIRKVKilkapkfdlgklmevhgdysedvgvkvdrpadepipeapteviga
adpfakkdwydikapscfrvrnvgktlvtrtqgtkiaseglkhrvFEVSLGDLLNEEEHAYRKIrlraedvqgknvltnfwgmsftTDKLRSLVRKWHTLIEAyvdvkttdnfTLRLFCIGFtkrlpnqvkrtcyaqtsqirQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREiekatssiyplqnvfIRKVKILKAPKFDLGKLMEVHGDYSEdvgvkvdrpadepipeapteviga
ADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEPIPEAPTEVIGA
******KDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDV**********************
ADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDL************************************
ADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEPIPE********
ADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY**************************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEPIPEAPTEVIGA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query241 2.2.26 [Sep-21-2011]
A5B4K1261 40S ribosomal protein S3a yes no 1.0 0.923 0.842 1e-119
Q8GTE3261 40S ribosomal protein S3a N/A no 1.0 0.923 0.829 1e-118
P33444261 40S ribosomal protein S3a N/A no 0.995 0.919 0.834 1e-118
Q42262262 40S ribosomal protein S3a yes no 0.995 0.916 0.825 1e-116
Q285L8261 40S ribosomal protein S3a N/A no 1.0 0.923 0.817 1e-116
P49198260 40S ribosomal protein S3a N/A no 0.933 0.865 0.866 1e-114
Q9CAV0262 40S ribosomal protein S3a no no 0.995 0.916 0.825 1e-114
P49397262 40S ribosomal protein S3a yes no 0.946 0.870 0.851 1e-114
Q9MBB3261 40S ribosomal protein S3a N/A no 0.995 0.919 0.812 1e-113
P49396262 40S ribosomal protein S3a N/A no 0.991 0.912 0.818 1e-112
>sp|A5B4K1|RS3A1_VITVI 40S ribosomal protein S3a-1 OS=Vitis vinifera GN=GSVIVT00020038001 PE=3 SV=1 Back     alignment and function desciption
 Score =  426 bits (1096), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 203/241 (84%), Positives = 218/241 (90%)

Query: 1   ADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHA 60
           ADPFAKKDWYDIKAPS F VRNVGKTLV+RTQGTKIASEGLKHRVFE+SL DL  +E+ A
Sbjct: 21  ADPFAKKDWYDIKAPSVFEVRNVGKTLVSRTQGTKIASEGLKHRVFEISLADLQADEDQA 80

Query: 61  YRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCI 120
           YRKIRLRAEDVQG+NVLTNFWGM FTTDKLRSLVRKW TLIEA+VDVKTTDN+TLRLFCI
Sbjct: 81  YRKIRLRAEDVQGRNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRLFCI 140

Query: 121 GFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKA 180
            FTK+  NQ K+TCYAQ+SQIRQIRRKMREIM   A SCDLK LV+KFI E IGREIEKA
Sbjct: 141 AFTKKRVNQNKKTCYAQSSQIRQIRRKMREIMTNMATSCDLKELVKKFIPESIGREIEKA 200

Query: 181 TSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEPIPEAPTEVIG 240
           TSSIYPLQNV+IRKVKILKAPKFDLGKLMEVHGDYSEDVG K++RPADEP+ E  TEVIG
Sbjct: 201 TSSIYPLQNVYIRKVKILKAPKFDLGKLMEVHGDYSEDVGTKLERPADEPVAEGVTEVIG 260

Query: 241 A 241
           A
Sbjct: 261 A 261

Vitis vinifera (taxid: 29760)
>sp|Q8GTE3|RS3A_CICAR 40S ribosomal protein S3a OS=Cicer arietinum PE=2 SV=1 Back     alignment and function description
>sp|P33444|RS3A_CATRO 40S ribosomal protein S3a OS=Catharanthus roseus GN=RPS3A PE=2 SV=4 Back     alignment and function description
>sp|Q42262|RS3A2_ARATH 40S ribosomal protein S3a-2 OS=Arabidopsis thaliana GN=RPS3AB PE=2 SV=3 Back     alignment and function description
>sp|Q285L8|RS3A_TOBAC 40S ribosomal protein S3a OS=Nicotiana tabacum GN=cyc07 PE=2 SV=1 Back     alignment and function description
>sp|P49198|RS3A_HELAN 40S ribosomal protein S3a OS=Helianthus annuus GN=RPS3A PE=2 SV=2 Back     alignment and function description
>sp|Q9CAV0|RS3A1_ARATH 40S ribosomal protein S3a-1 OS=Arabidopsis thaliana GN=RPS3AA PE=1 SV=3 Back     alignment and function description
>sp|P49397|RS3A_ORYSJ 40S ribosomal protein S3a OS=Oryza sativa subsp. japonica GN=RPS3A PE=2 SV=2 Back     alignment and function description
>sp|Q9MBB3|RS3A_DAUCA 40S ribosomal protein S3a OS=Daucus carota GN=cyc07 PE=2 SV=1 Back     alignment and function description
>sp|P49396|RS3A_BRARA 40S ribosomal protein S3a OS=Brassica rapa GN=RPS3A PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query241
449432676261 PREDICTED: 40S ribosomal protein S3a-lik 0.995 0.919 0.879 1e-122
255552081260 40S ribosomal protein S3a, putative [Ric 0.995 0.923 0.858 1e-121
449455292260 PREDICTED: 40S ribosomal protein S3a-lik 0.991 0.919 0.879 1e-121
359806025261 uncharacterized protein LOC100813273 [Gl 1.0 0.923 0.854 1e-121
359806537261 uncharacterized protein LOC100805519 [Gl 1.0 0.923 0.858 1e-121
118482920260 unknown [Populus trichocarpa] gi|1184839 0.983 0.911 0.869 1e-120
356535985261 PREDICTED: 40S ribosomal protein S3a-lik 1.0 0.923 0.850 1e-120
224107967261 predicted protein [Populus trichocarpa] 0.983 0.908 0.869 1e-120
406870061261 40S ribosomal protein S3a-like protein [ 0.995 0.919 0.866 1e-120
358248303261 uncharacterized protein LOC100808747 [Gl 1.0 0.923 0.850 1e-120
>gi|449432676|ref|XP_004134125.1| PREDICTED: 40S ribosomal protein S3a-like [Cucumis sativus] gi|449518719|ref|XP_004166384.1| PREDICTED: 40S ribosomal protein S3a-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 211/240 (87%), Positives = 224/240 (93%)

Query: 2   DPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAY 61
           DPFAKKDWYDIKAPS F V+NVGKTLVTRTQGTKIASEGLKHRVFE+SL DL  +EEHAY
Sbjct: 22  DPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQGTKIASEGLKHRVFEISLADLQEDEEHAY 81

Query: 62  RKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIG 121
           RKIRLRAEDVQG+NVLTNFWGM+FTTDKLRSLVRKWHTLIEA+VDVKTTDN+TLR+FCIG
Sbjct: 82  RKIRLRAEDVQGRNVLTNFWGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIG 141

Query: 122 FTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKAT 181
           FTKR PNQVKRTCYAQ+SQIRQIRRKMREIMV QA+SCDLK LV KFI E IG+EIEKAT
Sbjct: 142 FTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQASSCDLKELVRKFIPESIGKEIEKAT 201

Query: 182 SSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEPIPEAPTEVIGA 241
           SSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKV+RPADE   E  TEV+GA
Sbjct: 202 SSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVERPADETAVEGATEVVGA 261

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255552081|ref|XP_002517085.1| 40S ribosomal protein S3a, putative [Ricinus communis] gi|223543720|gb|EEF45248.1| 40S ribosomal protein S3a, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449455292|ref|XP_004145387.1| PREDICTED: 40S ribosomal protein S3a-like [Cucumis sativus] gi|449472057|ref|XP_004153483.1| PREDICTED: 40S ribosomal protein S3a-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|359806025|ref|NP_001241430.1| uncharacterized protein LOC100813273 [Glycine max] gi|255642505|gb|ACU21516.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|359806537|ref|NP_001241005.1| uncharacterized protein LOC100805519 [Glycine max] gi|255646854|gb|ACU23898.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|118482920|gb|ABK93373.1| unknown [Populus trichocarpa] gi|118483951|gb|ABK93864.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356535985|ref|XP_003536521.1| PREDICTED: 40S ribosomal protein S3a-like [Glycine max] Back     alignment and taxonomy information
>gi|224107967|ref|XP_002314671.1| predicted protein [Populus trichocarpa] gi|222863711|gb|EEF00842.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|406870061|gb|AFS65104.1| 40S ribosomal protein S3a-like protein [Elaeis guineensis] Back     alignment and taxonomy information
>gi|358248303|ref|NP_001239858.1| uncharacterized protein LOC100808747 [Glycine max] gi|255646807|gb|ACU23875.1| unknown [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query241
TAIR|locus:2139574262 AT4G34670 [Arabidopsis thalian 0.995 0.916 0.825 4.1e-104
TAIR|locus:2114840262 AT3G04840 [Arabidopsis thalian 0.995 0.916 0.825 1.4e-103
UNIPROTKB|Q56JV9264 RPS3A "40S ribosomal protein S 0.941 0.859 0.626 5.7e-75
UNIPROTKB|F2Z4Q5264 RPS3A "Uncharacterized protein 0.941 0.859 0.626 5.7e-75
UNIPROTKB|P61247264 RPS3A "40S ribosomal protein S 0.941 0.859 0.626 5.7e-75
UNIPROTKB|F2Z5C7264 RPS3A "Uncharacterized protein 0.941 0.859 0.626 5.7e-75
UNIPROTKB|P61246260 RPS3A "40S ribosomal protein S 0.941 0.873 0.626 5.7e-75
UNIPROTKB|A4R1I7256 RPS1 "40S ribosomal protein S1 0.962 0.906 0.635 9.3e-75
MGI|MGI:1202063264 Rps3a1 "ribosomal protein S3A1 0.941 0.859 0.621 1.2e-74
RGD|62078264 Rps3a "ribosomal protein S3a" 0.941 0.859 0.621 1.2e-74
TAIR|locus:2139574 AT4G34670 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1031 (368.0 bits), Expect = 4.1e-104, P = 4.1e-104
 Identities = 199/241 (82%), Positives = 216/241 (89%)

Query:     2 DPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAY 61
             DPF+KKDWYD+KAP  F  RNVGKTLV+RTQGTKIASEGLKHRVFEVSL DL N+E++AY
Sbjct:    22 DPFSKKDWYDVKAPGSFTNRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDNAY 81

Query:    62 RKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIG 121
             RKIRLRAEDVQG+NVLT FWGM FTTDKLRSLV+KW TLIEA+VDVKTTD +TLR+FCI 
Sbjct:    82 RKIRLRAEDVQGRNVLTQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDGYTLRMFCIA 141

Query:   122 FTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKAT 181
             FTKR  NQVKRTCYAQ+SQIRQIRRKM EIMV +A+SCDLK LV KFI E IGREIEKAT
Sbjct:   142 FTKRRANQVKRTCYAQSSQIRQIRRKMSEIMVKEASSCDLKELVAKFIPEAIGREIEKAT 201

Query:   182 SSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKVDRPADEPIPEAPTEVIG 240
               IYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY+ EDVGVKVDRPADE + E PTE+IG
Sbjct:   202 QGIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYTAEDVGVKVDRPADETMVEEPTEIIG 261

Query:   241 A 241
             A
Sbjct:   262 A 262
GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS
GO:0005622 "intracellular" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0005840 "ribosome" evidence=IEA
GO:0006412 "translation" evidence=IEA;ISS
GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA
GO:0005730 "nucleolus" evidence=IDA
GO:0022626 "cytosolic ribosome" evidence=IDA
GO:0005618 "cell wall" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=RCA
GO:0001510 "RNA methylation" evidence=RCA
TAIR|locus:2114840 AT3G04840 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q56JV9 RPS3A "40S ribosomal protein S3a" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z4Q5 RPS3A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P61247 RPS3A "40S ribosomal protein S3a" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z5C7 RPS3A "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|P61246 RPS3A "40S ribosomal protein S3a" [Felis catus (taxid:9685)] Back     alignment and assigned GO terms
UNIPROTKB|A4R1I7 RPS1 "40S ribosomal protein S1" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
MGI|MGI:1202063 Rps3a1 "ribosomal protein S3A1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|62078 Rps3a "ribosomal protein S3a" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q0UFP1RS3A_PHANONo assigned EC number0.64500.95430.9019N/Ano
Q9CAV0RS3A1_ARATHNo assigned EC number0.82570.99580.9160nono
Q6DV02RS3A_GECJANo assigned EC number0.62330.92530.8446N/Ano
A6RZS5RS3A_BOTFBNo assigned EC number0.62660.96260.9062N/Ano
Q6C2R9RS3A_YARLINo assigned EC number0.62230.96680.9137yesno
A5B4K1RS3A1_VITVINo assigned EC number0.84231.00.9233yesno
A1CZL7RS3A_NEOFINo assigned EC number0.64520.96680.9101N/Ano
Q2GW51RS3A_CHAGBNo assigned EC number0.64100.96680.9101N/Ano
Q42262RS3A2_ARATHNo assigned EC number0.82570.99580.9160yesno
B2VUE4RS3A_PYRTRNo assigned EC number0.66520.96260.9098N/Ano
B0Y356RS3A_ASPFCNo assigned EC number0.64520.96680.9101N/Ano
Q764D2RS3A_LENEDNo assigned EC number0.67680.95020.8945N/Ano
P97351RS3A_MOUSENo assigned EC number0.60330.96260.8787yesno
Q9MBB3RS3A_DAUCANo assigned EC number0.81250.99580.9195N/Ano
C7YTD6RS3A_NECH7No assigned EC number0.63510.96260.9062N/Ano
Q5AS60RS3A_EMENINo assigned EC number0.62390.96680.9101yesno
Q0CA00RS3A_ASPTNNo assigned EC number0.63670.96680.9101N/Ano
Q871N9RS3A_NEUCRNo assigned EC number0.64100.96680.9101N/Ano
B6HFE0RS3A_PENCWNo assigned EC number0.61530.96680.9101yesno
B0CY45RS3A_LACBSNo assigned EC number0.64620.95020.8945N/Ano
Q4KTD9RS3A_SUBDONo assigned EC number0.65290.90450.8650N/Ano
A2R9S1RS3A_ASPNCNo assigned EC number0.63670.96680.9101yesno
B5DGL6RS3A_SALSANo assigned EC number0.59670.95850.8684N/Ano
P49397RS3A_ORYSJNo assigned EC number0.85150.94600.8702yesno
P49396RS3A_BRARANo assigned EC number0.81810.99170.9122N/Ano
B8NSD4RS3A_ASPFNNo assigned EC number0.64100.96680.9101N/Ano
Q4WTM9RS3A_ASPFUNo assigned EC number0.64520.96680.9101yesno
Q8GTE3RS3A_CICARNo assigned EC number0.82981.00.9233N/Ano
Q56JV9RS3A_BOVINNo assigned EC number0.60740.96260.8787yesno
B8PIG4RS3A_POSPMNo assigned EC number0.67240.95020.8945N/Ano
A7E4H3RS3A_SCLS1No assigned EC number0.62660.96260.9062N/Ano
Q4R4Z6RS3A_MACFANo assigned EC number0.60330.96260.8787N/Ano
P33444RS3A_CATRONo assigned EC number0.83470.99580.9195N/Ano
P61247RS3A_HUMANNo assigned EC number0.60740.96260.8787yesno
Q2UTI8RS3A_ASPORNo assigned EC number0.64100.96680.9101yesno
O43999RS3A_EIMTENo assigned EC number0.59910.96260.8787N/Ano
P61246RS3A_FELCANo assigned EC number0.60740.96260.8923N/Ano
P49198RS3A_HELANNo assigned EC number0.86660.93360.8653N/Ano
Q4PM31RS3A_IXOSCNo assigned EC number0.61760.92940.8296N/Ano
B6QGS2RS3A_PENMQNo assigned EC number0.62820.96680.9101N/Ano
A8HS48RS3A_CHLRENo assigned EC number0.75110.93360.8687N/Ano
A4R1I7RS3A_MAGO7No assigned EC number0.63510.96260.9062N/Ano
A4SAD2RS3A_OSTLUNo assigned EC number0.73000.93360.8653yesno
B8MBY6RS3A_TALSNNo assigned EC number0.62820.96680.9101N/Ano
A7Q5X9RS3A2_VITVINo assigned EC number0.87140.87130.8974nono
A8NX92RS3A_COPC7No assigned EC number0.65060.95020.8945N/Ano
Q9XEG7RS3A_TORRUNo assigned EC number0.70400.90870.8830N/Ano
A1C4N6RS3A_ASPCLNo assigned EC number0.64100.96680.9101N/Ano
Q285L8RS3A_TOBACNo assigned EC number0.81741.00.9233N/Ano
P49242RS3A_RATNo assigned EC number0.60330.96260.8787yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query241
pfam01015195 pfam01015, Ribosomal_S3Ae, Ribosomal S3Ae family 3e-92
COG1890214 COG1890, RPS1A, Ribosomal protein S3AE [Translatio 2e-71
PRK04057203 PRK04057, PRK04057, 30S ribosomal protein S3Ae; Va 4e-39
>gnl|CDD|216245 pfam01015, Ribosomal_S3Ae, Ribosomal S3Ae family Back     alignment and domain information 
 Score =  269 bits (690), Expect = 3e-92
 Identities = 100/201 (49%), Positives = 125/201 (62%), Gaps = 16/201 (7%)

Query: 2   DPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAY 61
           DP+ +K+WYD+KAP+ F  R +GKT            E LK RV EVSL DL  +   + 
Sbjct: 11  DPWKRKEWYDVKAPAMFGSREIGKTPAND-------PEKLKGRVVEVSLADLTGDYSKSN 63

Query: 62  RKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIG 121
           RK++ + EDVQG N LTNF G   T D LRSLVR+W + IEA VDVKT D + LR+F I 
Sbjct: 64  RKLKFKIEDVQGDNALTNFHGHELTRDYLRSLVRRWTSKIEAIVDVKTKDGYLLRVFVIA 123

Query: 122 FTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKAT 181
           FTK+          AQTSQ R IR+KM EI+  +A+  D K  V+K I   I ++IEKA 
Sbjct: 124 FTKK---------RAQTSQKRAIRKKMTEIITKEASELDFKEFVQKLIPGSIAKDIEKAA 174

Query: 182 SSIYPLQNVFIRKVKILKAPK 202
             IYPL+ V IRKVK+LK PK
Sbjct: 175 KKIYPLRRVEIRKVKVLKRPK 195

Length = 195
>gnl|CDD|224802 COG1890, RPS1A, Ribosomal protein S3AE [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|235216 PRK04057, PRK04057, 30S ribosomal protein S3Ae; Validated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 241
PF01015194 Ribosomal_S3Ae: Ribosomal S3Ae family; InterPro: I 100.0
PRK04057203 30S ribosomal protein S3Ae; Validated 100.0
KOG1628249 consensus 40S ribosomal protein S3A [Translation, 100.0
COG1890214 RPS1A Ribosomal protein S3AE [Translation, ribosom 100.0
cd03407262 Band_7_4 A subgroup of the band 7 domain of flotil 87.07
cd03400124 Band_7_1 A subgroup of the band 7 domain of flotil 80.91
>PF01015 Ribosomal_S3Ae: Ribosomal S3Ae family; InterPro: IPR001593 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information 
Probab=100.00  E-value=4.9e-79  Score=529.48  Aligned_cols=186  Identities=61%  Similarity=0.956  Sum_probs=165.1

Q ss_pred             CCCCCCcceEEEeCCCCCCcceeeeeeeecccccccCccCCCCcEEEEeccccCCchhhceeEEEEEEeeecCCeeeEee
Q 040060            1 ADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNF   80 (241)
Q Consensus         1 ~D~~~~KeWY~V~AP~~F~~~~iG~T~v~kt~g~~~a~~~l~GRv~EvsL~DL~~d~~~~~~K~kfki~~V~G~~a~T~F   80 (241)
                      +|+|++|+||+|+||++|+.+++|+||+++       ||.|+||+||+||+||+||++++|+||+|+|++|+|++|+|+|
T Consensus         9 ~d~~~~K~WY~V~AP~~F~~~~iG~T~~~~-------~~~l~gRv~Evsl~DL~~d~~~~~~K~~f~i~~V~g~~a~T~F   81 (194)
T PF01015_consen    9 VDPWKKKEWYDVKAPSMFGNRNIGKTPANK-------PEKLKGRVFEVSLADLTNDFSKAYRKFKFKIEDVQGNNALTNF   81 (194)
T ss_dssp             S-TTTTEEEEEEE--TTSSSSEECEEEEE--------CCCCCC-EEEEECHCCCSTTTTSS-EEEEEEEEEETTEEEEEE
T ss_pred             cCCCccceeEEEECCHHhCcceeeEEEcCC-------cccccCeEEEEEHHHhcCchhhhcEEEEEEEEeecCCEEEEEE
Confidence            699999999999999999999999999996       9999999999999999999999999999999999999999999


Q ss_pred             ecccccchhhhhhhccceeeEEEEEEEEeCCCcEEEEEEEEEeeccCCcCcccchhhhhhhHHHHHHHHHHHHHHHhhCC
Q 040060           81 WGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCD  160 (241)
Q Consensus        81 ~GmelTrDklrSlVrk~~s~Ie~~vdvkT~DGy~lRvf~i~fT~kr~~q~kkt~Ya~sSq~~~IRk~m~eii~~~~~~~~  160 (241)
                      ||||||+||||||||||||+||+++||+|+|||+|||||+|||+++         |++||+++||++|.++|++++++++
T Consensus        82 ~G~elt~D~lrSlvrk~~s~Ie~~~dvkT~DGy~lRvf~i~fT~~r---------a~~sq~~~IRk~m~~ii~~~~~~~~  152 (194)
T PF01015_consen   82 HGMELTRDKLRSLVRKWQSRIEAIVDVKTKDGYLLRVFCIAFTKKR---------AKSSQIKAIRKKMVEIITEEASELD  152 (194)
T ss_dssp             EEEE--HHHHHHC--TTC-EEEEEEEEEETTTEEEEEEEEEEE-------------TCHHHHHHHHHHHHHHHHHCCTSH
T ss_pred             cceecchhhhhcceeecceEEEEEEEEEcCCCcEEEEEEEEEEeec---------ccchHHHHHHHHHHHHHHHHhccCc
Confidence            9999999999999999999999999999999999999999999999         9999999999999999999999999


Q ss_pred             HHHHHHHHhhhhHHHHHHHhcccccccccEEEEEEEeecCCc
Q 040060          161 LKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPK  202 (241)
Q Consensus       161 l~e~v~~li~~~i~~eI~k~~k~IyPlr~v~IrKvKvlk~p~  202 (241)
                      |+|||++|++|+|++||+++|++|||||+|+|||||||+.|+
T Consensus       153 ~~e~V~~li~~~i~~eI~k~~k~IyPl~~v~IrKvKvlk~Pk  194 (194)
T PF01015_consen  153 LKELVKKLIPGSIGKEIEKACKKIYPLRNVEIRKVKVLKKPK  194 (194)
T ss_dssp             HHHHHHHHCTTHHHHHHHHHHCTT--EEEEEEEEEEEEE---
T ss_pred             HHHHHHHHccchHHHHHHHHhccccccceEEEEEEEEeccCC
Confidence            999999999999999999999999999999999999999996

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaebacterial ribosomal proteins can be grouped on the basis of sequence similarities. One of these families consists of proteins that have from 220 to 250 amino acids and represents Rps1 (eukaryotic) and Rps3Ae (archaeal and eukaryotic).; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2XZN_4 2XZM_4 3U5C_B 3U5G_B.
>PRK04057 30S ribosomal protein S3Ae; Validated Back     alignment and domain information
>KOG1628 consensus 40S ribosomal protein S3A [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG1890 RPS1A Ribosomal protein S3AE [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>cd03400 Band_7_1 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query241
3u5c_B255 The Structure Of The Eukaryotic Ribosome At 3.0 A R 4e-74
2xzm_4265 Crystal Structure Of The Eukaryotic 40s Ribosomal S 2e-51
3zey_0256 High-resolution Cryo-electron Microscopy Structure 1e-46
3j20_A198 Promiscuous Behavior Of Proteins In Archaeal Riboso 3e-21
>pdb|3U5C|B Chain B, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 40s Subunit, Ribosome A Length = 255 Back     alignment and structure 
Iteration: 1

 Score =  274 bits (700), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 133/229 (58%), Positives = 167/229 (72%), Gaps = 1/229 (0%)
Query: 2   DPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAY 61
           DPF +K+W+DIKAPS F  RNVGKTLV ++ G K AS+ LK RV EV L DL   E+H++
Sbjct: 22  DPFTRKEWFDIKAPSTFENRNVGKTLVNKSTGLKSASDALKGRVVEVCLADLQGSEDHSF 81
Query: 62  RKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIG 121
           RKI+LR ++VQGKN+LTNF GM FTTDKLRS+VRKW TLIEA V VKT+D++ LR+F I 
Sbjct: 82  RKIKLRVDEVQGKNLLTNFHGMDFTTDKLRSMVRKWQTLIEANVTVKTSDDYVLRIFAIA 141
Query: 122 FTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKAT 181
           FT++  NQVKR  YAQ+S IR IR+ + EI+  +     L  L  K I EVI +EIE AT
Sbjct: 142 FTRKQANQVKRHSYAQSSHIRAIRKVISEILTKEVQGSTLAQLTSKLIPEVINKEIENAT 201
Query: 182 SSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKVDRPADE 229
             I+PLQN+ +RKVK+LK PKFD+G LM +HG+ S E+ G KV    DE
Sbjct: 202 KDIFPLQNIHVRKVKLLKQPKFDVGALMALHGEGSGEEKGKKVTGFKDE 250
>pdb|2XZM|4 Chain 4, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 265 Back     alignment and structure
>pdb|3ZEY|0 Chain 0, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 256 Back     alignment and structure
>pdb|3J20|A Chain A, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (30s Ribosomal Subunit) Length = 198 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query241
3u5c_B255 RP10A, 40S ribosomal protein S1-A; translation, ri 3e-99
2xzm_4265 40S ribosomal protein S3A; ribosome, translation; 2e-93
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>3u5c_B RP10A, 40S ribosomal protein S1-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_B Length = 255 Back     alignment and structure
 Score =  288 bits (738), Expect = 3e-99
 Identities = 133/229 (58%), Positives = 167/229 (72%), Gaps = 1/229 (0%)

Query: 2   DPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAY 61
           DPF +K+W+DIKAPS F  RNVGKTLV ++ G K AS+ LK RV EV L DL   E+H++
Sbjct: 22  DPFTRKEWFDIKAPSTFENRNVGKTLVNKSTGLKSASDALKGRVVEVCLADLQGSEDHSF 81

Query: 62  RKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIG 121
           RKI+LR ++VQGKN+LTNF GM FTTDKLRS+VRKW TLIEA V VKT+D++ LR+F I 
Sbjct: 82  RKIKLRVDEVQGKNLLTNFHGMDFTTDKLRSMVRKWQTLIEANVTVKTSDDYVLRIFAIA 141

Query: 122 FTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKAT 181
           FT++  NQVKR  YAQ+S IR IR+ + EI+  +     L  L  K I EVI +EIE AT
Sbjct: 142 FTRKQANQVKRHSYAQSSHIRAIRKVISEILTKEVQGSTLAQLTSKLIPEVINKEIENAT 201

Query: 182 SSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKVDRPADE 229
             I+PLQN+ +RKVK+LK PKFD+G LM +HG+ S E+ G KV    DE
Sbjct: 202 KDIFPLQNIHVRKVKLLKQPKFDVGALMALHGEGSGEEKGKKVTGFKDE 250
>2xzm_4 40S ribosomal protein S3A; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_4 Length = 265 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query241
3u5c_B255 RP10A, 40S ribosomal protein S1-A; translation, ri 100.0
2xzm_4265 40S ribosomal protein S3A; ribosome, translation; 100.0
3j20_A198 30S ribosomal protein S3AE; archaea, archaeal, KIN 100.0
3bk6_A188 PH stomatin; archaea, trimer, coiled- coil, flotil 86.82
2rpb_A113 Hypothetical membrane protein; SPFH domain; NMR {P 80.73
>3u5c_B RP10A, 40S ribosomal protein S1-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_B Back     alignment and structure
Probab=100.00  E-value=1e-98  Score=672.64  Aligned_cols=229  Identities=57%  Similarity=0.917  Sum_probs=212.3

Q ss_pred             CCCCCCcceEEEeCCCCCCcceeeeeeeecccccccCccCCCCcEEEEeccccCCchhhceeEEEEEEeeecCCeeeEee
Q 040060            1 ADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNF   80 (241)
Q Consensus         1 ~D~~~~KeWY~V~AP~~F~~~~iG~T~v~kt~g~~~a~~~l~GRv~EvsL~DL~~d~~~~~~K~kfki~~V~G~~a~T~F   80 (241)
                      +|||++|+||+|+||++|+.++||+|||++|||++||||+|+|||||+|||||+||++++|+||+|+|++|+|++|+|+|
T Consensus        21 ~D~f~~K~WY~VkAP~~F~~r~iGkT~v~~t~gtkia~d~L~GRv~EvsLaDL~~D~~~~~rK~kl~i~~V~G~~~lT~F  100 (255)
T 3u5c_B           21 VDPFTRKEWFDIKAPSTFENRNVGKTLVNKSTGLKSASDALKGRVVEVCLADLQGSEDHSFRKIKLRVDEVQGKNLLTNF  100 (255)
T ss_dssp             CCTTTTCCEEEEECCSSSSCSEEEEEECCCCCSSSCHHHHSCCCEEEEESHHHHSCSTTSSCEEEEECCCEETTEECCEE
T ss_pred             cCCcccceeEEEeCccccCCcceeEEEcccccCcccCchhccCcEEEEEhhhccCChhhhceEEEEEEEeecCCEEEEEE
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecccccchhhhhhhccceeeEEEEEEEEeCCCcEEEEEEEEEeeccCCcCcccchhhhhhhHHHHHHHHHHHHHHHhhCC
Q 040060           81 WGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCD  160 (241)
Q Consensus        81 ~GmelTrDklrSlVrk~~s~Ie~~vdvkT~DGy~lRvf~i~fT~kr~~q~kkt~Ya~sSq~~~IRk~m~eii~~~~~~~~  160 (241)
                      ||||||+||||||||||||+|||++||+|+|||+|||||||||++|+||.+|||||++||+++||++|+++|++++++++
T Consensus       101 ~GmdlT~DklrSlVrKw~s~Iea~vdVkT~DGy~lRvf~i~fT~kr~~q~~kt~YA~~sQi~~IRkkm~eii~~~~~~~d  180 (255)
T 3u5c_B          101 HGMDFTTDKLRSMVRKWQTLIEANVTVKTSDDYVLRIFAIAFTRKQANQVKRHSYAQSSHIRAIRKVISEILTKEVQGST  180 (255)
T ss_dssp             EEECCCHHHHHHHCCTTSCEEECCEEEECSSSCEEEECCEEECCCCTTCCSSCCCCCSHHHHHHHHHHHHHHHHHSSSSH
T ss_pred             cceeechhhhhhhccccceEEEEEEEEEecCCCEEEEEEEEEEcccccccccceechHhHHHHHHHHHHHHHHHHhhhCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhHHHHHHHhcccccccccEEEEEEEeecCCccchhhhhhhhcCc-ccCCcceecCCCCCCCC
Q 040060          161 LKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY-SEDVGVKVDRPADEPIP  232 (241)
Q Consensus       161 l~e~v~~li~~~i~~eI~k~~k~IyPlr~v~IrKvKvlk~p~~~~~kl~e~~~~~-~~~~g~~~~~~~~~~~~  232 (241)
                      |+|||++||+|+|+++|+++|++|||||+|+|||||||+.|+||+++|||+||++ ++++|.+|+   +||||
T Consensus       181 l~e~V~kli~~~i~~eI~k~~k~IyPL~~V~IrKvKvLk~Pk~d~~kl~e~hg~~~~~~~g~~v~---~~~~~  250 (255)
T 3u5c_B          181 LAQLTSKLIPEVINKEIENATKDIFPLQNIHVRKVKLLKQPKFDVGALMALHGEGSGEEKGKKVT---GFKDE  250 (255)
T ss_dssp             HHHHHHHHTTTHHHHHHHHHHHTTCCCEEEECCCEEEEECCCCCHHHHGGGCC--------------------
T ss_pred             HHHHHHHHcCchHHHHHHHHhccccccceEEEEEEEEeecCcccHhHHHhhhcCCCCCcCccccc---ccCCc
Confidence            9999999999999999999999999999999999999999999999999999998 577899998   78775
>2xzm_4 40S ribosomal protein S3A; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_4 Back     alignment and structure
>3j20_A 30S ribosomal protein S3AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii} Back     alignment and structure
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query241
d1wina_143 Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]} 82.16
>d1wina_ d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Band 7/SPFH domain
family: Band 7/SPFH domain
domain: Flotillin-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.16  E-value=4.7  Score=29.67  Aligned_cols=88  Identities=10%  Similarity=0.127  Sum_probs=56.4

Q ss_pred             EEEEeCCCcEEEEEEEEEeeccCCcCcccchhh--------hhhhHHHHHHHHHHHHHHHhhCCHHHHHHH--HhhhhHH
Q 040060          105 VDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQ--------TSQIRQIRRKMREIMVAQAASCDLKSLVEK--FIAEVIG  174 (241)
Q Consensus       105 vdvkT~DGy~lRvf~i~fT~kr~~q~kkt~Ya~--------sSq~~~IRk~m~eii~~~~~~~~l~e~v~~--li~~~i~  174 (241)
                      -+|.|+||-.|.|-+++.-+-.. ..+-..||-        ..=...|+..+...|.+.+.+.+++++...  -+.+.+.
T Consensus        22 q~v~TkD~v~v~V~a~v~~rV~~-~~~~~~~a~~~~l~~~~~~~~~~i~~~~~~~lR~vig~~~l~el~~~R~~i~~~v~  100 (143)
T d1wina_          22 EDVETAEGVALTVTGVAQVKIMT-EKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGTLTVEQIYQDRDQFAKLVR  100 (143)
T ss_dssp             EEEECSSSCEEEECCEEEEEECC-CSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHH
T ss_pred             ceEECCCCCEEEEEEEEEEEEcC-cHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHhCHHHHHHHHH
Confidence            35889999999997765554322 222222331        112245677777789999999999999853  5666666


Q ss_pred             HHHHHhcccccccccEEEEEEEe
Q 040060          175 REIEKATSSIYPLQNVFIRKVKI  197 (241)
Q Consensus       175 ~eI~k~~k~IyPlr~v~IrKvKv  197 (241)
                      ++|.....+.    -++|.-+.+
T Consensus       101 ~~i~~~l~~~----Gi~v~~v~I  119 (143)
T d1wina_         101 EVAAPDVGRM----GIEILSFTI  119 (143)
T ss_dssp             HHHHHHHTTT----TEEEEEEEC
T ss_pred             HHHHHHHHHh----CeEEEEEEE
Confidence            6666666653    345555554