Citrus Sinensis ID: 040096

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210--
Protein Sequence
MGRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQSGRRLWDPKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQSEKMETMRKNGKMMEEEHNYLKFVLRQQEIARQQQELAMENSVSAEIDNYQRENHHDYAYHVQPIQPNLQERI
Secondary Structure (PSIPRED)
cccccccHHHcccccccccccccccccHHHHHHHHHHcccccccEEEEcccccccccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEcccccEEEEEcccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHccccccccccEEEEEccccccHHHcc
Coil and Loop (DISEMBL)
MGRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYAssgkmhdycspstsLVDILEQYHRqsgrrlwdpkhenlSNEIERIKRENDRMQIKLRhlngedisslnpKELIALEDALENGLVSIRDKQSEKMETMRKNGKMMEEEHNYLKFVLRQQEIARQQQELAMENSVSAEIdnyqrenhhdyayhvqpiqpnlqeri
Flexible Loop (DISEMBL)
mgrgkieikrienasnrqvtyskrrngilkkakeitvlcdAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQsgrrlwdpkhenlsNEIERIKRENDRMQIKLRhlngedisslnPKELIALEDALEnglvsirdkqsekMETMRKNGKMMEEEHNYLKFVLRQQEIARQQQELAMENSVSAEIDNYQRENHHDYAyhvqpiqpnlqeri
Low Complexity Region (SEG)
MGRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQSGRRLWDPKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQSEKMETMRKNGKMMEEEHNYLKFVLRQQEIARQQQELAMENSVSAEIDNYQRENHHDYAYHVQPIQPNLQERI
Disordered region (IsUnstruct)
************************RNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHR************************************************IAL**********************************YLKFVLR*******************************YAY*************
Disordered Region (DISOPRED)
MGRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQSGRRLWDPKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQSEKMETMRKNGKMMEEEHNYLKFVLR*********************************YHVQPIQP******
Disordered Region (DISEMBL)
MGRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQSGRRLWDPKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQSEKMETMRKNGKMMEEEHNYLKFVLRQQEIARQQQELAMENSVSAEIDNYQRENHHDYAYHVQPIQPNLQERI
Disordered Region (DISPRO)
****KIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQSGRRLWDPKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQSEKMETMRKNGKMMEEEHNYLKFVLRQQEIARQQQELAMENSVSAEIDNYQRENHHDYAYHVQPIQPN*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQSGRRLWDPKxxxxxxxxxxxxxxxxxxxxxxxxxxxxDISSLNPKELIALEDALENGLVSIxxxxxxxxxxxxxxxxxxxxxHNYLKFVLRQQEIARQQQELAMENSVSAEIDNYQRENHHDYAYHVQPIQPNLQERI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	212	2.2.26 [Sep-21-2011]
Q03488	210	Floral homeotic protein F	N/A	no	0.990	1.0	0.646	4e-73
Q07474	212	Floral homeotic protein P	N/A	no	1.0	1.0	0.641	7e-73
Q03378	215	Floral homeotic protein G	N/A	no	0.985	0.972	0.623	7e-73
Q03416	209	Floral homeotic protein G	N/A	no	0.966	0.980	0.634	9e-72
P48007	208	Floral homeotic protein P	yes	no	0.952	0.971	0.599	1e-66
Q40702	209	MADS-box transcription fa	yes	no	0.976	0.990	0.552	3e-60
Q40703	215	MADS-box transcription fa	no	no	0.938	0.925	0.508	2e-58
Q9XGJ4	237	MADS-box protein GGM13 OS	N/A	no	0.990	0.886	0.417	1e-40
Q944S9	224	MADS-box transcription fa	no	no	0.957	0.906	0.395	4e-37
Q8VWM8	259	MADS-box protein ZMM17 OS	N/A	no	0.990	0.810	0.331	4e-34

>sp|Q03488|FBP1_PETHY Floral homeotic protein FBP1 OS=Petunia hybrida GN=FBP1 PE=2 SV=1

 Score =  274 bits (700), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 137/212 (64%), Positives = 170/212 (80%), Gaps = 2/212 (0%)

Query: 1   MGRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSP 60
           MGRGKIEIKRIEN+SNRQVTYSKRRNGILKKAKEI+VLCDA+VS+II+ASSGKMH++   
Sbjct: 1   MGRGKIEIKRIENSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEF--S 58

Query: 61  STSLVDILEQYHRQSGRRLWDPKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKE 120
           STSLVDIL+QYH+ +GRRL D KHENL NEI ++K++ND MQI+LRHL GEDI+SLN +E
Sbjct: 59  STSLVDILDQYHKLTGRRLLDAKHENLDNEINKVKKDNDNMQIELRHLKGEDITSLNHRE 118

Query: 121 LIALEDALENGLVSIRDKQSEKMETMRKNGKMMEEEHNYLKFVLRQQEIARQQQELAMEN 180
           L+ LEDALENGL SIR+KQ+E +  MRK  + MEEE + L   LRQ EIA   + +    
Sbjct: 119 LMILEDALENGLTSIRNKQNEVLRMMRKKTQSMEEEQDQLNCQLRQLEIATMNRNMGEIG 178

Query: 181 SVSAEIDNYQRENHHDYAYHVQPIQPNLQERI 212
            V  + +N+  +NH  +A+ VQP+QPNLQER+
Sbjct: 179 EVFQQRENHDYQNHMPFAFRVQPMQPNLQERL 210

Probable transcription factor.
Petunia hybrida (taxid: 4102)

>sp|Q07474|MADS2_PETHY Floral homeotic protein PMADS 2 OS=Petunia hybrida GN=PMADS2 PE=2 SV=1

 Score =  273 bits (698), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 136/212 (64%), Positives = 165/212 (77%)

Query: 1   MGRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSP 60
           MGRGKIEIKRIEN+SNRQVTYSKRRNGI+KKAKEITVLCDAKVSLII+ +SGKMH+YCSP
Sbjct: 1   MGRGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAKVSLIIFGNSGKMHEYCSP 60

Query: 61  STSLVDILEQYHRQSGRRLWDPKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKE 120
           ST+L D+L+ Y + SGRRLWD KHENLSNEI+RIK+END MQ+KLRHL GEDI+SLN KE
Sbjct: 61  STTLPDMLDGYQKTSGRRLWDAKHENLSNEIDRIKKENDNMQVKLRHLKGEDINSLNHKE 120

Query: 121 LIALEDALENGLVSIRDKQSEKMETMRKNGKMMEEEHNYLKFVLRQQEIARQQQELAMEN 180
           L+ LE+ L NGL SI  KQSE +  +RKN +++EEEH  L++ L Q+E+A     + M  
Sbjct: 121 LMVLEEGLTNGLSSISAKQSEILRMVRKNDQILEEEHKQLQYALHQKEMAAMGGNMRMIE 180

Query: 181 SVSAEIDNYQRENHHDYAYHVQPIQPNLQERI 212
            V  + D         +A  VQP+QPNL ER+
Sbjct: 181 EVYHQRDRDYEYQQMPFALRVQPMQPNLHERM 212

Transcription factor involved in the genetic control of flower development.

Petunia hybrida (taxid: 4102)

>sp|Q03378|GLOB_ANTMA Floral homeotic protein GLOBOSA OS=Antirrhinum majus GN=GLO PE=1 SV=1

 Score =  273 bits (697), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 136/218 (62%), Positives = 173/218 (79%), Gaps = 9/218 (4%)

Query: 1   MGRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSP 60
           MGRGKIEIKRIEN+SNRQVTYSKRRNGI+KKAKEI+VLCDA VS+II+ASSGKMH++CSP
Sbjct: 1   MGRGKIEIKRIENSSNRQVTYSKRRNGIMKKAKEISVLCDAHVSVIIFASSGKMHEFCSP 60

Query: 61  STSLVDILEQYHRQSGRRLWDPKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKE 120
           ST+LVD+L+ YH+ SG+RLWDPKHE+L NEI R+K+END MQI+LRHL GEDI++LN KE
Sbjct: 61  STTLVDMLDHYHKLSGKRLWDPKHEHLDNEINRVKKENDSMQIELRHLKGEDITTLNYKE 120

Query: 121 LIALEDALENGLVSIRDKQSEKMETMRKNGKMMEEEHNYLKFVLRQQEIARQQQELAMEN 180
           L+ LEDALENG  ++++KQ E +  MRK+ +M+EEE+  L+F LRQ  +      + ME+
Sbjct: 121 LMVLEDALENGTSALKNKQMEFVRMMRKHNEMVEEENQSLQFKLRQMHLDPMNDNV-MES 179

Query: 181 SVSAEIDNYQRENHHDY------AYHVQPIQPNLQERI 212
              A  D++  +N  DY      A+ VQP+QPNLQER 
Sbjct: 180 --QAVYDHHHHQNIADYEAQMPFAFRVQPMQPNLQERF 215

Transcription factor involved in the genetic control of flower development. Acts in conjunction with DEFICIENS (defA).

Antirrhinum majus (taxid: 4151)

>sp|Q03416|GLOB_TOBAC Floral homeotic protein GLOBOSA OS=Nicotiana tabacum GN=GLO PE=2 SV=1

 Score =  269 bits (688), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 137/216 (63%), Positives = 170/216 (78%), Gaps = 11/216 (5%)

Query: 1   MGRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSP 60
           MGRGKIEIKRIEN+SNRQVTYSKRRNGILKKAKEI+VLCDA+VS+II+ASSGKMH++ S 
Sbjct: 1   MGRGKIEIKRIENSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEFSS- 59

Query: 61  STSLVDILEQYHRQSGRRLWDPKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKE 120
            TSLVDIL+QYH+ +GRRLWD KHENL NEI ++K++ND MQI+LRHL GEDI+SLN +E
Sbjct: 60  -TSLVDILDQYHKLTGRRLWDAKHENLDNEINKVKKDNDNMQIELRHLKGEDITSLNHRE 118

Query: 121 LIALEDALENGLVSIRDKQSEKMETMRKNGKMMEEEHNYLKFVLRQQEIARQQQELAMEN 180
           L+ LEDAL+NGL SIR+KQ++ +  MRK  + MEEE + L + LRQ EIA   + +    
Sbjct: 119 LMMLEDALDNGLTSIRNKQNDLLRMMRKKTQSMEEEQDQLNWQLRQLEIASMNRNMGEIG 178

Query: 181 SVSAEIDNYQRENHHD----YAYHVQPIQPNLQERI 212
            V      +QREN +     +A+ VQP+QPNLQER 
Sbjct: 179 EVF-----HQRENEYQTQMPFAFRVQPMQPNLQERF 209

Transcription factor involved in the genetic control of flower development. Acts in conjunction with DEFICIENS (defA).

Nicotiana tabacum (taxid: 4097)

>sp|P48007|PIST_ARATH Floral homeotic protein PISTILLATA OS=Arabidopsis thaliana GN=PI PE=1 SV=1

 Score =  252 bits (644), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 127/212 (59%), Positives = 158/212 (74%), Gaps = 10/212 (4%)

Query: 1   MGRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSP 60
           MGRGKIEIKRIENA+NR VT+SKRRNG++KKAKEITVLCDAKV+LII+AS+GKM DYC P
Sbjct: 1   MGRGKIEIKRIENANNRVVTFSKRRNGLVKKAKEITVLCDAKVALIIFASNGKMIDYCCP 60

Query: 61  STSLVDILEQYHRQSGRRLWDPKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKE 120
           S  L  +L+QY + SG++LWD KHENLSNEI+RIK+END +Q++LRHL GEDI SLN K 
Sbjct: 61  SMDLGAMLDQYQKLSGKKLWDAKHENLSNEIDRIKKENDSLQLELRHLKGEDIQSLNLKN 120

Query: 121 LIALEDALENGLVSIRDKQSEKMETMRKNGKMMEEEHNYLKFVLRQQEIARQQQELAMEN 180
           L+A+E A+E+GL  +RD Q E + + R+N KMM EE   L F L+QQE+A       M  
Sbjct: 121 LMAVEHAIEHGLDKVRDHQMEILISKRRNEKMMAEEQRQLTFQLQQQEMAIASNARGM-- 178

Query: 181 SVSAEIDNYQRENHHDYAYHVQPIQPNLQERI 212
                     R++   + Y VQPIQPNLQE+I
Sbjct: 179 --------MMRDHDGQFGYRVQPIQPNLQEKI 202

Probable transcription factor involved in the genetic control of flower development. Is required for normal development of petals and stamens in the wild-type flower. Forms an heterodimer with APETALA3 that is required for autoregulation of both AP3 and PI genes. AP3/PI heterodimer interacts with APETALA1 or SEPALLATA3 to form a ternary complex that could be responsible for the regulation of the genes involved in the flower development. AP3/PI heterodimer activates the expression of NAP.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40702|MADS2_ORYSJ MADS-box transcription factor 2 OS=Oryza sativa subsp. japonica GN=MADS2 PE=2 SV=1

 Score =  231 bits (589), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 116/210 (55%), Positives = 155/210 (73%), Gaps = 3/210 (1%)

Query: 1   MGRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSP 60
           MGRGKIEIKRIEN++NRQVT+SKRR+GILKKA+EI+VLCDA+V ++I++S+GK++DYCSP
Sbjct: 1   MGRGKIEIKRIENSTNRQVTFSKRRSGILKKAREISVLCDAEVGVVIFSSAGKLYDYCSP 60

Query: 61  STSLVDILEQYHRQSGRRLWDPKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKE 120
            TSL  ILE+Y   SG+ LWD KH++LS EI+RIK+END MQI+LRHL GED++SL PKE
Sbjct: 61  KTSLSRILEKYQTNSGKILWDEKHKSLSAEIDRIKKENDNMQIELRHLKGEDLNSLQPKE 120

Query: 121 LIALEDALENGLVSIRDKQSEKMETMRKNGKMMEEEHNYLKFVLRQQEIARQQQELAMEN 180
           LI +E+AL+NG+V++ DK  +  E   +  KM+E+E+  L F L QQ+IA       +E 
Sbjct: 121 LIMIEEALDNGIVNVNDKLMDHWERHVRTDKMLEDENKLLAFKLHQQDIALSGSMRDLEL 180

Query: 181 SVSAEIDNYQRENHHDYAYHVQPIQPNLQE 210
               + D   +       + VQP  PNLQE
Sbjct: 181 GYHPDRDFAAQ---MPITFRVQPSHPNLQE 207

Probable transcription factor involved in the development of floral organs. B-class protein required for normal development of lodicules (whorl 2).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q40703|MADS4_ORYSJ MADS-box transcription factor 4 OS=Oryza sativa subsp. japonica GN=MADS4 PE=1 SV=3

 Score =  225 bits (573), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 114/224 (50%), Positives = 154/224 (68%), Gaps = 25/224 (11%)

Query: 1   MGRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSP 60
           MGRGKIEIKRIEN++NRQVT+SKRR GILKKA+EI VLCDA+V ++I++S+GK+ DYC+P
Sbjct: 1   MGRGKIEIKRIENSTNRQVTFSKRRAGILKKAREIGVLCDAEVGVVIFSSAGKLSDYCTP 60

Query: 61  STS-----LVDILEQYHRQSGRRLWDPKHENLSNEIERIKRENDRMQIKLRHLNGEDISS 115
            T+     L  ILE+Y   SG+ LWD KH++LS EI+R+K+END MQI+LRH+ GED++S
Sbjct: 61  KTTSVFPPLSRILEKYQTNSGKILWDEKHKSLSAEIDRVKKENDNMQIELRHMKGEDLNS 120

Query: 116 LNPKELIALEDALENGLVSIRDKQSEKMETMRKNGKMMEEEHNYLKFVLRQQEIARQQQE 175
           L PKELIA+E+AL NG  ++RDK  +     ++N KM+E+EH  L F + QQE+      
Sbjct: 121 LQPKELIAIEEALNNGQANLRDKMMDHWRMHKRNEKMLEDEHKMLAFRVHQQEV------ 174

Query: 176 LAMENSVSAEIDNYQRENHHD---------YAYHVQPIQPNLQE 210
                 +S  I   +   HHD         + + VQP  PNLQ+
Sbjct: 175 -----ELSGGIRELELGYHHDDRDFAASMPFTFRVQPSHPNLQQ 213

Probable transcription factor involved in the development of floral organs. B-class protein required for normal development of lodicules and stamens (whorls 2 and 3). May function as an heterodimer with MADS16.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9XGJ4|GGM13_GNEGN MADS-box protein GGM13 OS=Gnetum gnemon GN=GGM13 PE=2 SV=1

 Score =  166 bits (420), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 94/225 (41%), Positives = 147/225 (65%), Gaps = 15/225 (6%)

Query: 1   MGRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSP 60
           MGRGKIEIKRIEN +NRQVT+SKRR G+LKKA E++VLCDA++ LII++SSGK+ +Y S 
Sbjct: 1   MGRGKIEIKRIENTTNRQVTFSKRRGGLLKKAHELSVLCDAELGLIIFSSSGKLFEYSSA 60

Query: 61  STSLVDILEQYHRQSGRRLWDPKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKE 120
           S+S+  I+E+Y + SG R+ +  +++L  E+ R+K EN+++Q  +R + GED++SL   E
Sbjct: 61  SSSMKKIIERYQKVSGARITEYDNQHLYCEMTRMKNENEKLQTNIRRMMGEDLTSLTMTE 120

Query: 121 LIALEDALENGLVSIRDKQSEKM----ETMRKNGKMMEEEHNYLKFVLRQQEIARQQ-QE 175
           L  L   LE+    +R ++++ M    E +R+  +++E+++++L  +L +Q+ A +  QE
Sbjct: 121 LHHLGQQLESASSRVRSRKNQLMLQQLENLRRKERILEDQNSHLCRLLAEQQAAVEGVQE 180

Query: 176 LAMENSV-SAEIDNYQRE---------NHHDYAYHVQPIQPNLQE 210
             +E  V     DN              HH  A+ +QP QPNLQE
Sbjct: 181 PLLEFGVFCPPPDNKTAAAANAGPLHLGHHLPAFRLQPTQPNLQE 225

Probable transcription factor.

Gnetum gnemon (taxid: 3382)

>sp|Q944S9|MAD16_ORYSJ MADS-box transcription factor 16 OS=Oryza sativa subsp. japonica GN=MADS16 PE=1 SV=2

 Score =  154 bits (389), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 85/215 (39%), Positives = 129/215 (60%), Gaps = 12/215 (5%)

Query: 1   MGRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSP 60
           MGRGKIEIKRIENA+NRQVTYSKRR GI+KKA+E+TVLCDA+V++I+++S+GK H++CSP
Sbjct: 1   MGRGKIEIKRIENATNRQVTYSKRRTGIMKKARELTVLCDAQVAIIMFSSTGKYHEFCSP 60

Query: 61  STSLVDILEQYHRQSGRRLWDPKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKE 120
           ST +  I ++Y +  G  LW  ++EN+   +  +K  N  ++ ++R   GED+  L   E
Sbjct: 61  STDIKGIFDRYQQAIGTSLWIEQYENMQRTLSHLKDINRNLRTEIRQRMGEDLDGLEFDE 120

Query: 121 LIALEDALENGLVSIRDKQ----SEKMETMRKNGKMMEEEHNYLKFVLRQQEIA-RQQQE 175
           L  LE  ++  L  +R ++    + + ET +K  K     H+Y  +   QQE+  R++  
Sbjct: 121 LRGLEQNVDAALKEVRHRKYHVITTQTETYKKKVK-----HSYEAYETLQQELGLREEPA 175

Query: 176 LAMENSVSAEIDNYQRENHHD--YAYHVQPIQPNL 208
               ++     D           +A+ V P QPNL
Sbjct: 176 FGFVDNTGGGWDGGAGAGAAADMFAFRVVPSQPNL 210

Probable transcription factor involved in the development of floral organs. Required for normal development of lodicules and stamens (whorls 2 and 3). May function as an heterodimer with MADS4.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8VWM8|M17_MAIZE MADS-box protein ZMM17 OS=Zea mays GN=M17 PE=2 SV=1

 Score =  144 bits (363), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 81/244 (33%), Positives = 144/244 (59%), Gaps = 34/244 (13%)

Query: 1   MGRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSP 60
           MGRGKIEIKRIEN++NRQVT+SKRR G+LKKA E+ VLCDA+V ++I++S+GKM +YCSP
Sbjct: 1   MGRGKIEIKRIENSTNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSP 60

Query: 61  STSLVDILEQYHRQSGRRLWDPKHE-NLSNEIERIKRENDRMQIKLRHLNGEDISSLNPK 119
           + SL +++EQY   +     +  H+  +  E+ R+K E ++++  +R   G+D+SSL   
Sbjct: 61  ACSLRELIEQYQHATNSHFEEINHDQQILLEMTRMKNEMEKLETGIRRYTGDDLSSLTLD 120

Query: 120 ELIALEDALENGLVSIRDKQ----SEKMETMRKNGKMMEEEHNYLKFVLRQQE------- 168
           ++  LE  LE  +  +R ++    +++++ +R+  +++E+++ +L  ++ + +       
Sbjct: 121 DVSDLEQQLEYSVSKVRARKHQLLNQQLDNLRRKEQILEDQNTFLYRMINENQQAALTGE 180

Query: 169 --------IARQQQELAMENSVSA-------------EIDNYQRENHH-DYAYHVQPIQP 206
                   +A  Q   A  +S +A             ++ +   + H  D  + +QP QP
Sbjct: 181 VKLGEMAPLAMLQPPPAFAHSATAYYGGESSSSGTALQLMSAAPQLHADDLGFRLQPTQP 240

Query: 207 NLQE 210
           NLQ+
Sbjct: 241 NLQD 244

Probable transcription factor.

Zea mays (taxid: 4577)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	212
315418856	208	PI [Actinidia chinensis]	0.981	1.0	0.683	7e-79
323482761	209	MADS domain transcription factor [Camell	0.985	1.0	0.674	4e-77
323482763	208	MADS domain transcription factor [Camell	0.981	1.0	0.655	2e-76
4105097	211	MADS box protein 26 [Cucumis sativus]	0.966	0.971	0.675	4e-76
354683070	211	PISTILLATA [Passiflora edulis]	0.990	0.995	0.661	2e-75
317106689	211	JMS09K11.9 [Jatropha curcas]	0.966	0.971	0.651	3e-75
147868423	210	B-class MADS-box protein PI [Carica papa	0.990	1.0	0.655	8e-75
154243317	211	MADS box transcription factor [Populus d	0.966	0.971	0.633	3e-74
224063010	211	MIKC mads-box transcription factor [Popu	0.966	0.971	0.623	4e-74
12666535	215	Pistillata MADS-box protein [Malus x dom	1.0	0.986	0.651	8e-74

>gi|315418856|gb|ADU15475.1| PI [Actinidia chinensis]

 Score =  298 bits (764), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 145/212 (68%), Positives = 181/212 (85%), Gaps = 4/212 (1%)

Query: 1   MGRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSP 60
           MGRGKIEIKRIE++SNRQVTYSKRRNGILKKAKEI+VLCDAKVSL+I+ASSGKMH+YCSP
Sbjct: 1   MGRGKIEIKRIEHSSNRQVTYSKRRNGILKKAKEISVLCDAKVSLVIFASSGKMHEYCSP 60

Query: 61  STSLVDILEQYHRQSGRRLWDPKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKE 120
           ST+LVDIL++YH+QSG+RLWD KHENLSNE++RIK+END MQI+LRHL GEDI+SL+ KE
Sbjct: 61  STTLVDILDKYHKQSGKRLWDAKHENLSNELDRIKKENDSMQIELRHLKGEDITSLHHKE 120

Query: 121 LIALEDALENGLVSIRDKQSEKMETMRKNGKMMEEEHNYLKFVLRQQEIARQQQELAMEN 180
           L+ALE+ALENGL  IR+KQ E  + M+KN KM+E+E+ +L F+L QQ +  + +E  MEN
Sbjct: 121 LMALEEALENGLSGIREKQMEVFKMMKKNEKMLEDENKHLNFMLHQQGMTMESRE--MEN 178

Query: 181 SVSAEIDNYQRENHHDYAYHVQPIQPNLQERI 212
                + +YQ +    +A+HVQPIQPNLQ+RI
Sbjct: 179 GYHQRVRDYQHQM--PFAFHVQPIQPNLQDRI 208

Source: Actinidia chinensis

Species: Actinidia chinensis

Genus: Actinidia

Family: Actinidiaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|323482761|gb|ADX86812.1| MADS domain transcription factor [Camellia japonica]

 Score =  293 bits (749), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 143/212 (67%), Positives = 178/212 (83%), Gaps = 3/212 (1%)

Query: 1   MGRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSP 60
           MGRGKIEIKRIEN+SNRQVTYSKRRNGI+KKAKEITVLCDA+VSL+I+ASSGKMH+YCSP
Sbjct: 1   MGRGKIEIKRIENSSNRQVTYSKRRNGIMKKAKEITVLCDAQVSLVIFASSGKMHEYCSP 60

Query: 61  STSLVDILEQYHRQSGRRLWDPKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKE 120
           ST+LVDIL++YH+QSG RLWD KHENLSNE++RIK+END MQI+LRHL GEDI+SL+ KE
Sbjct: 61  STTLVDILDKYHKQSGERLWDAKHENLSNELDRIKKENDSMQIELRHLKGEDITSLHHKE 120

Query: 121 LIALEDALENGLVSIRDKQSEKMETMRKNGKMMEEEHNYLKFVLRQQEIARQQQELAMEN 180
           L+A+E+ALENGL S+R+KQ E ++ M KN K +EEE+ +L F+L QQE+  +     MEN
Sbjct: 121 LMAIEEALENGLGSVREKQMEYIDMMEKNKKTLEEENKHLNFMLHQQEMNMESSR-EMEN 179

Query: 181 SVSAEIDNYQRENHHDYAYHVQPIQPNLQERI 212
                + ++Q  +   +A+ VQPIQPNLQERI
Sbjct: 180 GYHQRVRDFQ--SQMPFAFRVQPIQPNLQERI 209

Source: Camellia japonica

Species: Camellia japonica

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|323482763|gb|ADX86813.1| MADS domain transcription factor [Camellia japonica]

 Score =  290 bits (743), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 139/212 (65%), Positives = 176/212 (83%), Gaps = 4/212 (1%)

Query: 1   MGRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSP 60
           MGRGKIEIKRIEN SNRQVTYSKRRNGILKKAKEITVLCDA+VSL+++ SSGKMH++CSP
Sbjct: 1   MGRGKIEIKRIENTSNRQVTYSKRRNGILKKAKEITVLCDAQVSLVVFGSSGKMHEFCSP 60

Query: 61  STSLVDILEQYHRQSGRRLWDPKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKE 120
           ST+LVDILE+YH+QSG+RLWD KHENLSNE++RIK+END +QI+LRHL GEDI+SL P++
Sbjct: 61  STTLVDILEKYHKQSGKRLWDAKHENLSNELDRIKKENDSLQIELRHLKGEDITSLQPRD 120

Query: 121 LIALEDALENGLVSIRDKQSEKMETMRKNGKMMEEEHNYLKFVLRQQEIARQQQELAMEN 180
           L+A+E+ALE GL S+R KQSE    M+KNGKM+EE++  L  +L QQE+ +  +E   EN
Sbjct: 121 LMAIENALETGLESVRYKQSEIHRMMKKNGKMLEEDNKQLNLILHQQEMEKGSREF--EN 178

Query: 181 SVSAEIDNYQRENHHDYAYHVQPIQPNLQERI 212
               ++++YQ +    + + VQPIQPNL ERI
Sbjct: 179 GYHRQVNDYQPQ--MPFTFRVQPIQPNLHERI 208

Source: Camellia japonica

Species: Camellia japonica

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4105097|gb|AAD02250.1| MADS box protein 26 [Cucumis sativus]

 Score =  289 bits (740), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 146/216 (67%), Positives = 178/216 (82%), Gaps = 11/216 (5%)

Query: 1   MGRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSP 60
           MGRGKIEIKRIEN+SNRQVTYSKRRNGI+KKAKEITVLCDA+VSL+I+ASSGKMH+YCSP
Sbjct: 1   MGRGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAQVSLVIFASSGKMHEYCSP 60

Query: 61  STSLVDILEQYHRQSGRRLWDPKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKE 120
           ST LVDIL++YH+QSG+RLWD KHENLSNE++R+K+END MQI+LRHL GEDI+SLN KE
Sbjct: 61  STPLVDILDKYHKQSGKRLWDAKHENLSNEMDRVKKENDNMQIELRHLRGEDITSLNYKE 120

Query: 121 LIALEDALENGLVSIRDKQSEKMETMRKNGKMMEEEHNYLKFVLRQQEIARQQQELAMEN 180
           L+ALE+ALENGL  +R+KQSE M+ MR N +MMEEE+  L + L Q+E+      +AM +
Sbjct: 121 LMALEEALENGLTGVREKQSEFMKMMRTNERMMEEENKRLNYELYQKEM------VAMGD 174

Query: 181 SV-SAEIDNYQR----ENHHDYAYHVQPIQPNLQER 211
           SV   +I   QR     +   +A+ VQPIQPNLQER
Sbjct: 175 SVREMDIGYNQRMRDFNSQMPFAFRVQPIQPNLQER 210

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|354683070|gb|AER30449.1| PISTILLATA [Passiflora edulis]

 Score =  287 bits (734), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 141/213 (66%), Positives = 176/213 (82%), Gaps = 3/213 (1%)

Query: 1   MGRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSP 60
           MGRGKIEIKRIEN+SNRQVTYSKRRNGI+KKAKEITVLCDAKVSL+I+ SSGKMH+YCSP
Sbjct: 1   MGRGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAKVSLVIFGSSGKMHEYCSP 60

Query: 61  STSLVDILEQYHRQSGRRLWDPKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKE 120
           ST+LVD+L++YH+QSG+RLWD KHENLSNEI+RIK+END MQI+LRHL GEDI+SL+ KE
Sbjct: 61  STTLVDLLDKYHKQSGKRLWDAKHENLSNEIDRIKKENDSMQIELRHLKGEDITSLHHKE 120

Query: 121 LIALEDALENGLVSIRDKQSEKMETMRKNGKMMEEEHNYLKFVLRQQEIARQQQELAMEN 180
           L+ALE ALENGLV +R+KQ +      KN K++E+E   L F+L+QQE+A ++    MEN
Sbjct: 121 LLALEKALENGLVGVREKQMDYYRMKEKNNKILEDEGKRLSFILQQQEMAIEEDAREMEN 180

Query: 181 SVSAE-IDNYQRENHHDYAYHVQPIQPNLQERI 212
           +   + +  Y   +   +A+ VQPIQPNLQER+
Sbjct: 181 AYHQQKLREYS--SQIPFAFRVQPIQPNLQERM 211

Source: Passiflora edulis

Species: Passiflora edulis

Genus: Passiflora

Family: Passifloraceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317106689|dbj|BAJ53191.1| JMS09K11.9 [Jatropha curcas]

 Score =  286 bits (733), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 142/218 (65%), Positives = 177/218 (81%), Gaps = 13/218 (5%)

Query: 1   MGRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSP 60
           MGRGKIEIKRIEN SNRQVTYSKRR GI+KKAKEITVLCDA+VSL+I+ASSGKMH+YCSP
Sbjct: 1   MGRGKIEIKRIENTSNRQVTYSKRRAGIMKKAKEITVLCDAQVSLVIFASSGKMHEYCSP 60

Query: 61  STSLVDILEQYHRQSGRRLWDPKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKE 120
           STSL++IL++YH+ +G+R+WD KHENLSNEI+RIK+END MQI+LRH+ GEDI+SLN KE
Sbjct: 61  STSLIEILDKYHKHAGKRIWDAKHENLSNEIDRIKKENDSMQIELRHMKGEDIASLNHKE 120

Query: 121 LIALEDALENGLVSIRDKQSEKMETMRKNGKMMEEEHNYLKFVLRQQEIARQQQELAMEN 180
           L+ +E+ALENGL SIRDKQ E ++ M+KN K++EEE+  L F+L       QQQE+A+E 
Sbjct: 121 LMHIEEALENGLASIRDKQMEYLKMMKKNEKILEEENKRLSFIL-------QQQEMAIEE 173

Query: 181 SVSAEIDNYQRENHHDY------AYHVQPIQPNLQERI 212
           +V    + Y +    DY      A+ VQPIQPNLQER+
Sbjct: 174 NVRELENPYHQHRVRDYSSQMPFAFRVQPIQPNLQERM 211

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147868423|gb|ABQ51323.1| B-class MADS-box protein PI [Carica papaya]

 Score =  285 bits (729), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 139/212 (65%), Positives = 171/212 (80%), Gaps = 2/212 (0%)

Query: 1   MGRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSP 60
           MGRGKIEIKRIEN SNRQVTYSKRRNGI+KKAKEITVLCDA+VSLII+ASSGKMH+YCSP
Sbjct: 1   MGRGKIEIKRIENLSNRQVTYSKRRNGIIKKAKEITVLCDARVSLIIFASSGKMHEYCSP 60

Query: 61  STSLVDILEQYHRQSGRRLWDPKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKE 120
           STSL ++L++YH+    RLWD KHENL+NEIER+K+END MQI+LRHL GEDI+SLN ++
Sbjct: 61  STSLTNMLDEYHKAGKPRLWDAKHENLNNEIERVKKENDNMQIELRHLRGEDITSLNHRD 120

Query: 121 LIALEDALENGLVSIRDKQSEKMETMRKNGKMMEEEHNYLKFVLRQQEIARQQQELAMEN 180
           L+ALE+ LE GL S+R+KQ E ++ MR+N K++EEE+  L F L+QQEIA +     MEN
Sbjct: 121 LMALEETLETGLASVRNKQMEVLKMMRRNEKILEEENRRLSFALQQQEIAIENSAREMEN 180

Query: 181 SVSAEIDNYQRENHHDYAYHVQPIQPNLQERI 212
                +  Y    H  +A+ VQPIQPNLQ+RI
Sbjct: 181 GYQQRMREYN--AHMPFAFRVQPIQPNLQDRI 210

Source: Carica papaya

Species: Carica papaya

Genus: Carica

Family: Caricaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|154243317|gb|ABS71831.1| MADS box transcription factor [Populus deltoides]

 Score =  283 bits (725), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 138/218 (63%), Positives = 176/218 (80%), Gaps = 13/218 (5%)

Query: 1   MGRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSP 60
           MGRGKIEIKRIENASNRQVTYSKR+NGI+KKAKEITVLCDA+VSL+I+ASSG+MH+YCSP
Sbjct: 1   MGRGKIEIKRIENASNRQVTYSKRKNGIIKKAKEITVLCDAQVSLVIFASSGRMHEYCSP 60

Query: 61  STSLVDILEQYHRQSGRRLWDPKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKE 120
           ST++VD+L++YH+QSG+RLWD KHENLS EI+RIK+END MQI+LRHL GEDISSL+  E
Sbjct: 61  STTVVDLLDKYHKQSGKRLWDAKHENLSKEIDRIKKENDSMQIELRHLKGEDISSLHHTE 120

Query: 121 LIALEDALENGLVSIRDKQSEKMETMRKNGKMMEEEHNYLKFVLRQQEIARQQQELAMEN 180
           L+A+E+AL+ GL ++R KQ E    + +N KM++EE   L+FVL+QQE+A  +  + MEN
Sbjct: 121 LMAIEEALDAGLAAVRKKQMEYHSMLEQNEKMLDEEFKRLQFVLQQQEMAMGENAMEMEN 180

Query: 181 SVSAEIDNYQRENHHDY------AYHVQPIQPNLQERI 212
           +       Y ++   DY      A+ VQPIQPNLQER+
Sbjct: 181 A-------YHQQRMRDYNFQVPFAFRVQPIQPNLQERM 211

Source: Populus deltoides

Species: Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224063010|ref|XP_002300964.1| MIKC mads-box transcription factor [Populus trichocarpa] gi|222842690|gb|EEE80237.1| MIKC mads-box transcription factor [Populus trichocarpa]

 Score =  283 bits (723), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 136/218 (62%), Positives = 179/218 (82%), Gaps = 13/218 (5%)

Query: 1   MGRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSP 60
           MGRGKIEIKRIEN+SNRQVTYSKRR+GI+KKAKEITVLCDA+VSL+I+ASSG+MH+YCSP
Sbjct: 1   MGRGKIEIKRIENSSNRQVTYSKRRSGIIKKAKEITVLCDAQVSLVIFASSGRMHEYCSP 60

Query: 61  STSLVDILEQYHRQSGRRLWDPKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKE 120
           ST++VD+L++YH+QSG+RLWD KHENLSNEI+RIK+EN+ MQI+LRHL G+DISSL  KE
Sbjct: 61  STTVVDLLDKYHKQSGKRLWDAKHENLSNEIDRIKKENESMQIELRHLKGQDISSLPHKE 120

Query: 121 LIALEDALENGLVSIRDKQSEKMETMRKNGKMMEEEHNYLKFVLRQQEIARQQQELAMEN 180
           L+A+E+AL+ GL ++R KQ E    + +N K+++EE  +L+FVL+QQE+A ++  + MEN
Sbjct: 121 LMAIEEALDTGLAAVRKKQMEFHSMLEQNEKILDEEFKHLQFVLQQQEMAMEENAMEMEN 180

Query: 181 SVSAEIDNYQRENHHDY------AYHVQPIQPNLQERI 212
           +       Y ++   DY      A+ VQPIQPNLQER+
Sbjct: 181 A-------YHQQRVRDYNSQVPLAFRVQPIQPNLQERM 211

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12666535|emb|CAC28022.1| Pistillata MADS-box protein [Malus x domestica]

 Score =  282 bits (721), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 140/215 (65%), Positives = 176/215 (81%), Gaps = 3/215 (1%)

Query: 1   MGRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSP 60
           MGRGK+EIKRIEN+SNRQVTYSKRRNGI+KKAKEITVLCDAKVSLIIY+SSGKM +YCSP
Sbjct: 1   MGRGKVEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAKVSLIIYSSSGKMVEYCSP 60

Query: 61  STSLVDILEQYHRQSGRRLWDPKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKE 120
           ST+L +IL++YH QSG++LWD KHENLSNE++R+K++ND MQ++LRHL GEDI+SLN  E
Sbjct: 61  STTLTEILDKYHGQSGKKLWDAKHENLSNEVDRVKKDNDSMQVELRHLKGEDITSLNHVE 120

Query: 121 LIALEDALENGLVSIRDKQSEKMETMRKNGKMMEEEHNYLKFVL-RQQEIARQQQELAME 179
           L+ALE+ALENGL SIRDKQS+ ++ MR NGK +E+E+  L + L +QQE+  ++    ME
Sbjct: 121 LMALEEALENGLTSIRDKQSKFVDMMRDNGKALEDENKRLTYELQKQQEMKIEENVRNME 180

Query: 180 NSV-SAEIDNYQRENHH-DYAYHVQPIQPNLQERI 212
           N     ++ NY        +A+ VQPIQPNLQERI
Sbjct: 181 NGYHQRQLGNYNNNQQQIPFAFRVQPIQPNLQERI 215

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	212
UNIPROTKB|Q03378	215	GLO "Floral homeotic protein G	0.981	0.967	0.626	9.2e-68
UNIPROTKB|Q9ZS26	197	gglo1 "MADS-box protein, GGLO1	0.929	1.0	0.613	3.7e-64
TAIR|locus:2149264	208	PI "PISTILLATA" [Arabidopsis t	0.952	0.971	0.599	4.3e-61
UNIPROTKB|Q9ATE5	268	FBP24 "MADS-box protein FBP24"	0.891	0.705	0.396	5e-35
UNIPROTKB|Q9ZS28	226	gdef1 "MADs-box protein, GDEF1	0.948	0.889	0.385	2.5e-33
TAIR|locus:2166766	252	TT16 "TRANSPARENT TESTA16" [Ar	0.844	0.710	0.367	4.1e-33
UNIPROTKB|P23706	227	DEFA "Floral homeotic protein	0.792	0.740	0.390	7.7e-32
UNIPROTKB|Q10CQ1	246	MADS14 "MADS-box transcription	0.806	0.695	0.445	1.6e-31
TAIR|locus:2033273	256	AP1 "AT1G69120" [Arabidopsis t	0.952	0.789	0.377	5.4e-31
UNIPROTKB|Q9ATF1	245	FBP9 "MADS-box transcription f	0.834	0.722	0.423	1.1e-30

UNIPROTKB|Q03378 GLO "Floral homeotic protein GLOBOSA" [Antirrhinum majus (taxid:4151)]

 Score = 688 (247.2 bits), Expect = 9.2e-68, P = 9.2e-68
 Identities = 136/217 (62%), Positives = 173/217 (79%)

Query:     1 MGRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSP 60
             MGRGKIEIKRIEN+SNRQVTYSKRRNGI+KKAKEI+VLCDA VS+II+ASSGKMH++CSP
Sbjct:     1 MGRGKIEIKRIENSSNRQVTYSKRRNGIMKKAKEISVLCDAHVSVIIFASSGKMHEFCSP 60

Query:    61 STSLVDILEQYHRQSGRRLWDPKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKE 120
             ST+LVD+L+ YH+ SG+RLWDPKHE+L NEI R+K+END MQI+LRHL GEDI++LN KE
Sbjct:    61 STTLVDMLDHYHKLSGKRLWDPKHEHLDNEINRVKKENDSMQIELRHLKGEDITTLNYKE 120

Query:   121 LIALEDALENGLVSIRDKQSEKMETMRKNGKMMEEEHNYLKFVLRQQEIARQQQELAMEN 180
             L+ LEDALENG  ++++KQ E +  MRK+ +M+EEE+  L+F LRQ  +      + ME+
Sbjct:   121 LMVLEDALENGTSALKNKQMEFVRMMRKHNEMVEEENQSLQFKLRQMHLDPMNDNV-MES 179

Query:   181 SVSAEIDNYQRENHHDY------AYHVQPIQPNLQER 211
                A  D++  +N  DY      A+ VQP+QPNLQER
Sbjct:   180 Q--AVYDHHHHQNIADYEAQMPFAFRVQPMQPNLQER 214

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q9ZS26 gglo1 "MADS-box protein, GGLO1" [Gerbera hybrid cultivar (taxid:18101)]

 Score = 654 (235.3 bits), Expect = 3.7e-64, P = 3.7e-64
 Identities = 130/212 (61%), Positives = 168/212 (79%)

Query:     1 MGRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSP 60
             MGRGKIEIKRIEN SNRQVTYSKR+NGI+KKAKEITVLCDA VSL+IY SSGKM++YCSP
Sbjct:     1 MGRGKIEIKRIENTSNRQVTYSKRKNGIIKKAKEITVLCDANVSLVIYGSSGKMYEYCSP 60

Query:    61 STSLVDILEQYHRQSGRRLWDPKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKE 120
              T+L+D+L++Y R SG +LWD KHENL NEI+RIK+EN+ MQI+LRHL GEDI+SLN +E
Sbjct:    61 KTNLIDMLDRYQRLSGNKLWDAKHENLQNEIDRIKKENESMQIELRHLKGEDITSLNYEE 120

Query:   121 LIALEDALENGLVSIRDKQSEKMETMRKNGKMMEEEHNYLKFVLRQQEIARQQQELAMEN 180
             LIA EDALENGL +IR+K+ E  + MRK+ +++EEE+ +L ++++Q E+A      AM  
Sbjct:   121 LIAYEDALENGLTNIREKKDEIPKIMRKHEQVLEEENKHLMYLVQQSEMA------AM-- 172

Query:   181 SVSAEIDNYQRENHHDYAYHVQPIQPNLQERI 212
                    +YQ   H  +++ VQP+QPNL ER+
Sbjct:   173 ------GDYQAA-HEPFSFRVQPMQPNLHERM 197

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2149264 PI "PISTILLATA" [Arabidopsis thaliana (taxid:3702)]

 Score = 625 (225.1 bits), Expect = 4.3e-61, P = 4.3e-61
 Identities = 127/212 (59%), Positives = 161/212 (75%)

Query:     1 MGRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSP 60
             MGRGKIEIKRIENA+NR VT+SKRRNG++KKAKEITVLCDAKV+LII+AS+GKM DYC P
Sbjct:     1 MGRGKIEIKRIENANNRVVTFSKRRNGLVKKAKEITVLCDAKVALIIFASNGKMIDYCCP 60

Query:    61 STSLVDILEQYHRQSGRRLWDPKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKE 120
             S  L  +L+QY + SG++LWD KHENLSNEI+RIK+END +Q++LRHL GEDI SLN K 
Sbjct:    61 SMDLGAMLDQYQKLSGKKLWDAKHENLSNEIDRIKKENDSLQLELRHLKGEDIQSLNLKN 120

Query:   121 LIALEDALENGLVSIRDKQSEKMETMRKNGKMMEEEHNYLKFVLRQQEIARQQQELAMEN 180
             L+A+E A+E+GL  +RD Q E + + R+N KMM EE   L F L       QQQE+A+ +
Sbjct:   121 LMAVEHAIEHGLDKVRDHQMEILISKRRNEKMMAEEQRQLTFQL-------QQQEMAIAS 173

Query:   181 SVSAEIDNYQRENHHDYAYHVQPIQPNLQERI 212
             +    +    R++   + Y VQPIQPNLQE+I
Sbjct:   174 NARGMM---MRDHDGQFGYRVQPIQPNLQEKI 202

GO:0003677 "DNA binding" evidence=IEA;ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0048481 "ovule development" evidence=RCA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|Q9ATE5 FBP24 "MADS-box protein FBP24" [Petunia x hybrida (taxid:4102)]

 Score = 353 (129.3 bits), Expect = 5.0e-35, Sum P(2) = 5.0e-35
 Identities = 84/212 (39%), Positives = 133/212 (62%)

Query:     1 MGRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSP 60
             MGRGKIE+KRIEN ++RQVT+SKRR G+LKK  E++VLCDA++ LII++S GK+ +YCS 
Sbjct:     4 MGRGKIEVKRIENKTSRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSKGKLFEYCSQ 63

Query:    61 STSLVDILEQYHRQSGRRLWDPKHEN---LSNEIERIKRENDRMQIKLRHLNGEDISSLN 117
               S+  I+ +Y + +G  L  P  +N   L +E+ +++R+   +Q+ L+   G+D+S   
Sbjct:    64 PHSMSQIISRYLQTTGASL--PVEDNRVQLYDEVAKMRRDTLNLQLSLQRYKGDDLSLAQ 121

Query:   118 PKELIALEDALENGLVSIRDKQSE----KMETMRKNGKMMEEE-HNYLKFVLRQQEIARQ 172
              +EL  LE  LE+ L  IR ++ E    +ME ++K  KM+E+E H+  ++++  Q     
Sbjct:   122 YEELNELEKQLEHALNKIRARKLELMQQQMENLKKTEKMLEKENHDMYQWLMNNQ---MY 178

Query:   173 QQELAMENSVSAEIDNYQRENHHDYAYHVQPI 204
             +QE       SA +D+   E+HH +  H Q I
Sbjct:   179 KQE-------SAAMDH---EDHHHHHEHQQAI 200

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q9ZS28 gdef1 "MADs-box protein, GDEF1" [Gerbera hybrid cultivar (taxid:18101)]

 Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
 Identities = 81/210 (38%), Positives = 130/210 (61%)

Query:     1 MGRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSP 60
             MGRGKIEIK+IEN +NRQVTYSKRRNGI KKA E+TVLCDAKVSLI+++++GK H+Y SP
Sbjct:     1 MGRGKIEIKKIENNTNRQVTYSKRRNGIFKKAHELTVLCDAKVSLIMFSNTGKFHEYISP 60

Query:    61 STSLVDILEQYHRQSGRRLWDPKHENLSNEIERIKRENDRMQIKLRH-LNGEDISSLNPK 119
             ST+   + +QY    G  LW   +E +   ++++K  N++++ ++R  + GED   L+  
Sbjct:    61 STTTKKMYDQYQSTVGFDLWSSHYERMKETMKKLKDTNNKLRREIRQRVLGEDFDGLDMN 120

Query:   120 ELIALEDALENGLVSIRDKQ----SEKMETMRKNGKMMEEEHNYLKFVLRQQEIARQQQE 175
             +L +LE  +++ L  +R+++      + +T RK  + +E+ +  L+  L  + I +  ++
Sbjct:   121 DLTSLEQHMQDSLTLVRERKYHVIKTQTDTCRKRVRNLEQRNGNLR--LDYETIHQLDKK 178

Query:   176 LAM-ENSVSAE-IDNYQRENHHDYAYHVQP 203
                 EN    E +  Y     + YA+ V P
Sbjct:   179 YDTGENEGDYESVVAYSNGVSNLYAFCVHP 208

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2166766 TT16 "TRANSPARENT TESTA16" [Arabidopsis thaliana (taxid:3702)]

 Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
 Identities = 68/185 (36%), Positives = 124/185 (67%)

Query:     1 MGRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSP 60
             MGRGKIEIK+IEN + RQVT+SKRR G++KK +E+++LCDA + LI+++++GK+ ++CS 
Sbjct:     1 MGRGKIEIKKIENQTARQVTFSKRRTGLIKKTRELSILCDAHIGLIVFSATGKLSEFCSE 60

Query:    61 STSLVDILEQYHRQSGRRLWD--PKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNP 118
                +  ++++Y   +G RL D     E L +E+E ++RE   ++++LR  +G D++S+ P
Sbjct:    61 QNRMPQLIDRYLHTNGLRLPDHHDDQEQLHHEMELLRRETCNLELRLRPFHGHDLASIPP 120

Query:   119 KELIALEDALENGLVSIRDKQSEKM----ETMRKNGKMMEEEHNYLKFVLRQQEIARQQQ 174
              EL  LE  LE+ ++ +R++++E M    E + +  +M+EE++N +   L +   A + Q
Sbjct:   121 NELDGLERQLEHSVLKVRERKNELMQQQLENLSRKRRMLEEDNNNMYRWLHEHRAAMEFQ 180

Query:   175 ELAME 179
             +  ++
Sbjct:   181 QAGID 185

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IMP

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0008360 "regulation of cell shape" evidence=IMP

GO:2000029 "regulation of proanthocyanidin biosynthetic process" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0048316 "seed development" evidence=IGI;IMP

GO:0048481 "ovule development" evidence=IGI;RCA;IMP

GO:0080155 "regulation of double fertilization forming a zygote and endosperm" evidence=IGI

GO:0010048 "vernalization response" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

UNIPROTKB|P23706 DEFA "Floral homeotic protein DEFICIENS" [Antirrhinum majus (taxid:4151)]

 Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
 Identities = 68/174 (39%), Positives = 116/174 (66%)

Query:     1 MGRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSP 60
             M RGKI+IKRIEN +NRQVTYSKRRNG+ KKA E++VLCDAKVS+I+ +S+ K+H+Y SP
Sbjct:     1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELSVLCDAKVSIIMISSTQKLHEYISP 60

Query:    61 STSLVDILEQYHRQSGRRLWDPKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKE 120
             +T+   + +QY +  G  LW   +E +   ++++   N  ++ ++R   GE ++ L  ++
Sbjct:    61 TTATKQLFDQYQKAVGVDLWSSHYEKMQEHLKKLNEVNRNLRREIRQRMGESLNDLGYEQ 120

Query:   121 LIALEDALENGLVSIRDKQ----SEKMETMRKNGKMMEEEHN--YLKFVLRQQE 168
             ++ L + ++N L  IR+++    S +++T +K  + +EE H    L+F  R+++
Sbjct:   121 IVNLIEDMDNSLKLIRERKYKVISNQIDTSKKKVRNVEEIHRNLVLEFDARRED 174

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q10CQ1 MADS14 "MADS-box transcription factor 14" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
 Identities = 82/184 (44%), Positives = 122/184 (66%)

Query:     1 MGRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSP 60
             MGRGK+++KRIEN  NRQVT+SKRR+G+LKKA EI+VLCDA+V+LII+++ GK+++Y + 
Sbjct:     1 MGRGKVQLKRIENKINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYEYATD 60

Query:    61 STSLVDILEQYHRQS--GRRLWDPKHENLSN---EIERIKRENDRMQIKLRHLNGEDISS 115
             S  +  ILE+Y R S   + L   + +   N   E  ++K + + +Q   +HL GED+ S
Sbjct:    61 SC-MDKILERYERYSYAEKVLISAESDTQGNWCHEYRKLKAKVETIQKCQKHLMGEDLES 119

Query:   116 LNPKELIALEDALENGLVSIRDKQSEKM-----ETMRKNGKMMEEEHNYL-KFVLRQQEI 169
             LN KEL  LE  LEN L  IR ++S+ M     E  RK  K ++EE+  L K ++ +Q++
Sbjct:   120 LNLKELQQLEQQLENSLKHIRSRKSQLMLESINELQRKE-KSLQEENKVLQKELVEKQKV 178

Query:   170 ARQQ 173
              +QQ
Sbjct:   179 QKQQ 182

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2033273 AP1 "AT1G69120" [Arabidopsis thaliana (taxid:3702)]

 Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 82/217 (37%), Positives = 133/217 (61%)

Query:     1 MGRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSP 60
             MGRG++++KRIEN  NRQVT+SKRR G+LKKA EI+VLCDA+V+L++++  GK+ +Y S 
Sbjct:     1 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALVVFSHKGKLFEY-ST 59

Query:    61 STSLVDILEQYHRQS--GRRLWDPKHE---NLSNEIERIKRENDRMQIKLRHLNGEDISS 115
              + +  ILE+Y R S   R+L  P+ +   N S E  R+K + + ++   RH  GED+ +
Sbjct:    60 DSCMEKILERYERYSYAERQLIAPESDVNTNWSMEYNRLKAKIELLERNQRHYLGEDLQA 119

Query:   116 LNPKELIALEDALENGLVSIRDKQS----EKMETMRKNGKMMEEEHNYLKFVLRQQE-IA 170
             ++PKEL  LE  L+  L  IR +++    E +  ++K  K ++E+++ L   ++++E I 
Sbjct:   120 MSPKELQNLEQQLDTALKHIRTRKNQLMYESINELQKKEKAIQEQNSMLSKQIKEREKIL 179

Query:   171 RQQQEL-AMEN---SVSAEIDNYQRENHHDYAYHVQP 203
             R QQE    +N   ++   +   Q +  H Y    QP
Sbjct:   180 RAQQEQWDQQNQGHNMPPPLPPQQHQIQHPYMLSHQP 216

GO:0003677 "DNA binding" evidence=ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009933 "meristem structural organization" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IGI;IDA

GO:0009908 "flower development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0010076 "maintenance of floral meristem identity" evidence=IGI

GO:0010582 "floral meristem determinacy" evidence=IGI

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009556 "microsporogenesis" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0009886 "post-embryonic morphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010093 "specification of floral organ identity" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048441 "petal development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

UNIPROTKB|Q9ATF1 FBP9 "MADS-box transcription factor FBP9" [Petunia x hybrida (taxid:4102)]

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 80/189 (42%), Positives = 123/189 (65%)

Query:     1 MGRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSP 60
             MGRG++E+KRIEN  NRQVT++KRRNG+LKKA E++VLCDA+V+LII++S GK++++CS 
Sbjct:     1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCST 60

Query:    61 STSLVDILEQYHRQSGRRLWDPKH-----ENLSNEIERIKRENDRMQIKLRHLNGEDISS 115
             S S++  LE+Y + S   L DP       +N  +E  R+K   + +Q   R+L GED+ S
Sbjct:    61 S-SMMKTLEKYQQCSYASL-DPMQSANDTQNNYHEYLRLKARVELLQRSQRNLLGEDLGS 118

Query:   116 LNPKELIALEDALENGLVSIRDKQSEKM----ETMRKNGKMMEEEHNYLKFVLRQQEIAR 171
             LN KEL  LE  L++ L  IR K+++ M      +++  +M+ E +  L+  L ++  AR
Sbjct:   119 LNSKELEQLEHQLDSSLKQIRSKKTQHMLDQLADLQQKEQMLAEANKQLRRKL-EESAAR 177

Query:   172 QQQELAMEN 180
                 L+ +N
Sbjct:   178 IPLRLSWDN 186

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q03488	FBP1_PETHY	No assigned EC number	0.6462	0.9905	1.0	N/A	no
Q03378	GLOB_ANTMA	No assigned EC number	0.6238	0.9858	0.9720	N/A	no
Q40702	MADS2_ORYSJ	No assigned EC number	0.5523	0.9764	0.9904	yes	no
Q03416	GLOB_TOBAC	No assigned EC number	0.6342	0.9669	0.9808	N/A	no
Q07474	MADS2_PETHY	No assigned EC number	0.6415	1.0	1.0	N/A	no
P48007	PIST_ARATH	No assigned EC number	0.5990	0.9528	0.9711	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	212
cd00265	77	cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer fa	3e-39
smart00432	59	smart00432, MADS, MADS domain	9e-33
cd00120	59	cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and	2e-29
pfam01486	100	pfam01486, K-box, K-box region	3e-24
cd00266	83	cd00266, MADS_SRF_like, SRF-like/Type I subfamily	4e-23
pfam00319	51	pfam00319, SRF-TF, SRF-type transcription factor (	2e-22
COG5068	412	COG5068, ARG80, Regulator of arginine metabolism a	9e-08

>gnl|CDD|238165 cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score =  129 bits (326), Expect = 3e-39
 Identities = 51/79 (64%), Positives = 68/79 (86%), Gaps = 2/79 (2%)

Query: 2  GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPS 61
          GRGKIEIKRIEN++NRQVT+SKRRNG+LKKA E++VLCDA+V+LII++SSGK++++ SPS
Sbjct: 1  GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPS 60

Query: 62 TSLVDILEQYHRQSGRRLW 80
               I+E+Y + SG  LW
Sbjct: 61 ME--KIIERYQKTSGSSLW 77

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 77

>gnl|CDD|197721 smart00432, MADS, MADS domain

 Score =  112 bits (282), Expect = 9e-33
 Identities = 38/59 (64%), Positives = 53/59 (89%)

Query: 2  GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSP 60
          GR KIEIKRIEN +NRQVT+SKRRNG+ KKA E++VLCDA+V+LI+++ +GK++++ SP
Sbjct: 1  GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP 59

Length = 59

>gnl|CDD|238067 cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

 Score =  103 bits (260), Expect = 2e-29
 Identities = 37/59 (62%), Positives = 53/59 (89%)

Query: 2  GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSP 60
          GRGKIEIKRIEN ++RQVT+SKRRNG+ KKA E++VLCDA+V++I+++ SGK++++ S 
Sbjct: 1  GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS 59

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 59

>gnl|CDD|216525 pfam01486, K-box, K-box region

 Score = 91.4 bits (228), Expect = 3e-24
 Identities = 39/95 (41%), Positives = 62/95 (65%), Gaps = 4/95 (4%)

Query: 71  YHRQSGRRLWDPKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALEN 130
           Y + SG  LW+ K+ENL  E  ++K++N+ +Q + RHL GED+ SL+ KEL  LE  LEN
Sbjct: 1   YQKLSGNDLWESKYENLQQEAAKLKKQNENLQREQRHLLGEDLGSLSLKELQQLEQQLEN 60

Query: 131 GLVSIRDKQSEKM----ETMRKNGKMMEEEHNYLK 161
           GL  IR +++E +    E ++K  + ++EE+  L+
Sbjct: 61  GLKHIRSRKNELLLNQIEELQKKERELQEENRNLR 95

The K-box region is commonly found associated with SRF-type transcription factors see pfam00319. The K-box is a possible coiled-coil structure. Possible role in multimer formation. Length = 100

>gnl|CDD|238166 cd00266, MADS_SRF_like, SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score = 88.1 bits (219), Expect = 4e-23
 Identities = 36/98 (36%), Positives = 54/98 (55%), Gaps = 15/98 (15%)

Query: 2  GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPS 61
          GR KI+IKRIEN   R VT+SKRR G+ KKA E++ LC A+V++I+Y+ SGK++ +   S
Sbjct: 1  GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSS 60

Query: 62 TSLVDILEQYHRQSGRRLWDPKHENLSNEIERIKREND 99
                  +                + + +ER K+  D
Sbjct: 61 EV------EGV---------ISRFEVLSALERKKKAVD 83

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 83

>gnl|CDD|109379 pfam00319, SRF-TF, SRF-type transcription factor (DNA-binding and dimerisation domain)

 Score = 85.1 bits (211), Expect = 2e-22
 Identities = 35/51 (68%), Positives = 47/51 (92%)

Query: 9  KRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCS 59
          KRIEN SNRQVT+SKRRNGI KKA E++VLCDA+V++II++S+GK+++Y S
Sbjct: 1  KRIENKSNRQVTFSKRRNGIFKKAHELSVLCDAEVAVIIFSSTGKLYEYSS 51

Length = 51

>gnl|CDD|227400 COG5068, ARG80, Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

 Score = 51.2 bits (122), Expect = 9e-08
 Identities = 24/61 (39%), Positives = 39/61 (63%)

Query: 1   MGRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSP 60
           +   KI I  I N + R VT+SKR++GI KKA E++VL   +V L++ + +G +H + +P
Sbjct: 81  VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTP 140

Query: 61  S 61
            
Sbjct: 141 K 141

Length = 412

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	212
KOG0014	195	consensus MADS box transcription factor [Transcrip	100.0
cd00265	77	MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-li	100.0
cd00266	83	MADS_SRF_like SRF-like/Type I subfamily of MADS (M	99.97
smart00432	59	MADS MADS domain.	99.97
cd00120	59	MADS MADS: MCM1, Agamous, Deficiens, and SRF (seru	99.96
PF00319	51	SRF-TF: SRF-type transcription factor (DNA-binding	99.94
PF01486	100	K-box: K-box region; InterPro: IPR002487 MADS gene	99.81
KOG0015	338	consensus Regulator of arginine metabolism and rel	99.79
COG5068	412	ARG80 Regulator of arginine metabolism and related	99.52
PF10584	23	Proteasome_A_N: Proteasome subunit A N-terminal si	88.08
PF06698	59	DUF1192: Protein of unknown function (DUF1192); In	86.95
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	82.14
smart00338	65	BRLZ basic region leucin zipper.	81.2
PRK13169	110	DNA replication intiation control protein YabA; Re	81.06
PF00170	64	bZIP_1: bZIP transcription factor cAMP response el	80.84

>KOG0014 consensus MADS box transcription factor [Transcription]

Probab=100.00  E-value=9e-39  Score=262.06  Aligned_cols=143  Identities=39%  Similarity=0.644  Sum_probs=117.8

Q ss_pred             CCcccceeEEeCCCccchhhhhhhhchHHHhHHhhhhhcCcceeeEeecCCCCcccccCCCcchhHHHHhhhhhcCCccc
Q 040096            1 MGRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQSGRRLW   80 (212)
Q Consensus         1 MgR~Ki~ik~Ien~~~RqvtfsKRr~GL~KKA~ELsvLCda~valivfS~~gk~~~~~s~~~~~~~ileRY~~~~~~~~~   80 (212)
                      |||+||+|++|+|.++|||||+|||+||||||+||||||||+||||||||+|++|+|||++.+|.+|++||...+.....
T Consensus         1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   80 (195)
T KOG0014|consen    1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLNLTEPSRK   80 (195)
T ss_pred             CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHhhhhhhhc
Confidence            99999999999999999999999999999999999999999999999999999999999877799999999886543211


Q ss_pred             CC---Cc----------------------cchhHHHHHHHhHhHhhhh---hhcccCCCCCCCCCH-HHHHHHHHHHHHh
Q 040096           81 DP---KH----------------------ENLSNEIERIKRENDRMQI---KLRHLNGEDISSLNP-KELIALEDALENG  131 (212)
Q Consensus        81 ~~---~~----------------------e~l~~el~kLkke~~~Lq~---~lR~l~GedL~~Ls~-~eL~~LE~~Le~~  131 (212)
                      ..   ..                      .........++...+.+..   ..+++.|+++.+++. .+|..++.+++.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~~~~l~~~  160 (195)
T KOG0014|consen   81 KKRVNLESFLRNKKLTELVEEEEKEELKLQLKKSLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSLESQLESS  160 (195)
T ss_pred             ccccchhhHhhhhhhhcccchhhhhhccchhhhhhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHHhcchhhHHHHh
Confidence            10   00                      0112233344444555543   377899999999999 9999999999999


Q ss_pred             HHHHHHHHHHHH
Q 040096          132 LVSIRDKQSEKM  143 (212)
Q Consensus       132 L~~VR~rK~~ll  143 (212)
                      +..+|..+...+
T Consensus       161 ~~~~~~~~~~~~  172 (195)
T KOG0014|consen  161 LHNSRSSKSKPL  172 (195)
T ss_pred             hcCCCCCCCcCC
Confidence            999999887665

>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=100.00  E-value=2.3e-35  Score=208.59  Aligned_cols=77  Identities=66%  Similarity=1.134  Sum_probs=74.7

Q ss_pred             CcccceeEEeCCCccchhhhhhhhchHHHhHHhhhhhcCcceeeEeecCCCCcccccCCCcchhHHHHhhhhhcCCccc
Q 040096            2 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQSGRRLW   80 (212)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvtfsKRr~GL~KKA~ELsvLCda~valivfS~~gk~~~~~s~~~~~~~ileRY~~~~~~~~~   80 (212)
                      ||+||+|++|||..+|+|||+||+.||||||.||||||||+||+|||||+|++|+|+||+  +++||+||++.++.++|
T Consensus         1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s~s--~~~vl~ry~~~~~~~~~   77 (77)
T cd00265           1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPS--MEKIIERYQKTSGSSLW   77 (77)
T ss_pred             CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecCCC--HHHHHHHHHhccccccC
Confidence            899999999999999999999999999999999999999999999999999999999987  89999999999988776

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=99.97  E-value=8.2e-32  Score=193.10  Aligned_cols=74  Identities=45%  Similarity=0.776  Sum_probs=71.1

Q ss_pred             CcccceeEEeCCCccchhhhhhhhchHHHhHHhhhhhcCcceeeEeecCCCCcccccCCCcchhHHHHhhhhhcC
Q 040096            2 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQSG   76 (212)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvtfsKRr~GL~KKA~ELsvLCda~valivfS~~gk~~~~~s~~~~~~~ileRY~~~~~   76 (212)
                      ||+||+|++|+|..+|+|||+|||.||||||+||||||||+||+|||||+|+.++||+++. +..++++|...+.
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~-~~~~l~~~~~~~~   74 (83)
T cd00266           1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSE-VEGVISRFEVLSA   74 (83)
T ss_pred             CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHH-HHHHHHHHhhcCH
Confidence            8999999999999999999999999999999999999999999999999999999999865 9999999988764

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>smart00432 MADS MADS domain

Probab=99.97  E-value=2.7e-31  Score=177.97  Aligned_cols=59  Identities=64%  Similarity=1.097  Sum_probs=58.2

Q ss_pred             CcccceeEEeCCCccchhhhhhhhchHHHhHHhhhhhcCcceeeEeecCCCCcccccCC
Q 040096            2 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSP   60 (212)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvtfsKRr~GL~KKA~ELsvLCda~valivfS~~gk~~~~~s~   60 (212)
                      ||+||+|++|+|+.+|++||+||+.||+|||+||||||||+||+|||||+|+++.||||
T Consensus         1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~p   59 (59)
T smart00432        1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP   59 (59)
T ss_pred             CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccCC
Confidence            89999999999999999999999999999999999999999999999999999999986

>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

Probab=99.96  E-value=2e-30  Score=173.81  Aligned_cols=59  Identities=63%  Similarity=1.063  Sum_probs=58.0

Q ss_pred             CcccceeEEeCCCccchhhhhhhhchHHHhHHhhhhhcCcceeeEeecCCCCcccccCC
Q 040096            2 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSP   60 (212)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvtfsKRr~GL~KKA~ELsvLCda~valivfS~~gk~~~~~s~   60 (212)
                      ||+||+|++|+|...|++||+||+.||+|||+||||||||+||+|||||+|+++.||+|
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~~   59 (59)
T cd00120           1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS   59 (59)
T ss_pred             CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccCC
Confidence            89999999999999999999999999999999999999999999999999999999985

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation

Probab=99.94  E-value=3.4e-28  Score=158.02  Aligned_cols=51  Identities=49%  Similarity=0.875  Sum_probs=47.0

Q ss_pred             EEeCCCccchhhhhhhhchHHHhHHhhhhhcCcceeeEeecCCCCcccccC
Q 040096            9 KRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCS   59 (212)
Q Consensus         9 k~Ien~~~RqvtfsKRr~GL~KKA~ELsvLCda~valivfS~~gk~~~~~s   59 (212)
                      |+|+|.+.|++||+|||.||+|||.|||+||||+||+|||||+|++|.|+|
T Consensus         1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s   51 (51)
T PF00319_consen    1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS   51 (51)
T ss_dssp             S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred             CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence            689999999999999999999999999999999999999999999999986

SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....

>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development

Probab=99.81  E-value=5.9e-20  Score=136.10  Aligned_cols=95  Identities=42%  Similarity=0.751  Sum_probs=91.5

Q ss_pred             hhhhcCCcccCCCccchhHHHHHHHhHhHhhhhhhcccCCCCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHH----HHH
Q 040096           71 YHRQSGRRLWDPKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQSEKM----ETM  146 (212)
Q Consensus        71 Y~~~~~~~~~~~~~e~l~~el~kLkke~~~Lq~~lR~l~GedL~~Ls~~eL~~LE~~Le~~L~~VR~rK~~ll----~~l  146 (212)
                      |++.++.+.|+..++.++.++.+|+.+++.|+..+|+++|+||++||++||..||++|+.+|.+||+||+++|    +.|
T Consensus         1 Y~~~~~~~~~~~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l   80 (100)
T PF01486_consen    1 YQKQSGTDLWDSQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEEL   80 (100)
T ss_pred             CCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            7888999999999999999999999999999999999999999999999999999999999999999999998    799


Q ss_pred             HHhhHHHHHHHHHHHHHHH
Q 040096          147 RKNGKMMEEEHNYLKFVLR  165 (212)
Q Consensus       147 ~kk~~~l~een~~L~~~~~  165 (212)
                      ++|+..|.++|..|+.++.
T Consensus        81 ~~ke~~l~~en~~L~~~~~   99 (100)
T PF01486_consen   81 KKKERELEEENNQLRQKIE   99 (100)
T ss_pred             HHHHHHHHHHHHHHHHHhc
Confidence            9999999999999998764

The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.79  E-value=1.7e-20  Score=159.50  Aligned_cols=66  Identities=38%  Similarity=0.648  Sum_probs=62.3

Q ss_pred             CcccceeEEeCCCccchhhhhhhhchHHHhHHhhhhhcCcceeeEeecCCCCcccccCCCcchhHHHH
Q 040096            2 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILE   69 (212)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvtfsKRr~GL~KKA~ELsvLCda~valivfS~~gk~~~~~s~~~~~~~ile   69 (212)
                      ||.||+|++|||+..|.|||||||.||||||+|||||+|++|-|+|.|.+|-+|.|++|-  ++-||.
T Consensus        63 gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaTpK--Lep~i~  128 (338)
T KOG0015|consen   63 GRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATPK--LEPMIT  128 (338)
T ss_pred             ceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEecccc--cccccc
Confidence            799999999999999999999999999999999999999999999999999999999976  666654

>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.52  E-value=5.1e-15  Score=131.29  Aligned_cols=67  Identities=37%  Similarity=0.616  Sum_probs=63.1

Q ss_pred             CCcccceeEEeCCCccchhhhhhhhchHHHhHHhhhhhcCcceeeEeecCCCCcccccCCCcchhHHHH
Q 040096            1 MGRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILE   69 (212)
Q Consensus         1 MgR~Ki~ik~Ien~~~RqvtfsKRr~GL~KKA~ELsvLCda~valivfS~~gk~~~~~s~~~~~~~ile   69 (212)
                      |||+||.|..|+|+.+|.|||+||+.||+|||.||+||.|.+|.|+|.|.+|+++.|++|.  .+.|+.
T Consensus        81 ~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~tp~--~e~v~~  147 (412)
T COG5068          81 VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTPK--LESVVK  147 (412)
T ss_pred             cccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecCCc--cccccc
Confidence            7899999999999999999999999999999999999999999999999999999999986  555554

>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3

Probab=88.08  E-value=0.11  Score=27.97  Aligned_cols=14  Identities=14%  Similarity=0.520  Sum_probs=11.3

Q ss_pred             eeeEeecCCCCccc
Q 040096           43 VSLIIYASSGKMHD   56 (212)
Q Consensus        43 valivfS~~gk~~~   56 (212)
                      -.+.+|||.|+++.
T Consensus         3 ~~~t~FSp~Grl~Q   16 (23)
T PF10584_consen    3 RSITTFSPDGRLFQ   16 (23)
T ss_dssp             SSTTSBBTTSSBHH
T ss_pred             CCceeECCCCeEEe
Confidence            45678999999974

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....

>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length

Probab=86.95  E-value=1.2  Score=29.76  Aligned_cols=32  Identities=31%  Similarity=0.342  Sum_probs=27.5

Q ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhHHHHHHH
Q 040096          107 HLNGEDISSLNPKELIALEDALENGLVSIRDK  138 (212)
Q Consensus       107 ~l~GedL~~Ls~~eL~~LE~~Le~~L~~VR~r  138 (212)
                      +..|+||+.||++||..--..|+.-+.+++.-
T Consensus        12 ~~ig~dLs~lSv~EL~~RIa~L~aEI~R~~~~   43 (59)
T PF06698_consen   12 HEIGEDLSLLSVEELEERIALLEAEIARLEAA   43 (59)
T ss_pred             cccCCCchhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            67899999999999999888888888777754

The function of this family is unknown.

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=82.14  E-value=14  Score=25.52  Aligned_cols=47  Identities=23%  Similarity=0.307  Sum_probs=31.5

Q ss_pred             CCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 040096          116 LNPKELIALEDALENGLVSIRDKQSEKMETMRKNGKMMEEEHNYLKFV  163 (212)
Q Consensus       116 Ls~~eL~~LE~~Le~~L~~VR~rK~~ll~~l~kk~~~l~een~~L~~~  163 (212)
                      ++++-+..||..+..++..|..=++++ +.|+.+...|.++|..|...
T Consensus         1 M~~E~l~~LE~ki~~aveti~~Lq~e~-eeLke~n~~L~~e~~~L~~e   47 (72)
T PF06005_consen    1 MSLELLEQLEEKIQQAVETIALLQMEN-EELKEKNNELKEENEELKEE   47 (72)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHH
Confidence            478889999999999999998776654 44555544444555555443

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>smart00338 BRLZ basic region leucin zipper

Probab=81.20  E-value=10  Score=25.17  Aligned_cols=39  Identities=15%  Similarity=0.296  Sum_probs=33.8

Q ss_pred             HhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 040096          130 NGLVSIRDKQSEKMETMRKNGKMMEEEHNYLKFVLRQQE  168 (212)
Q Consensus       130 ~~L~~VR~rK~~ll~~l~kk~~~l~een~~L~~~~~~~~  168 (212)
                      .+-...|.||...+..|..++..|..+|..|...+....
T Consensus        15 ~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~   53 (65)
T smart00338       15 EAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLR   53 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456678999999999999999999999999999886644

>PRK13169 DNA replication intiation control protein YabA; Reviewed

Probab=81.06  E-value=12  Score=28.02  Aligned_cols=49  Identities=18%  Similarity=0.144  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 040096          118 PKELIALEDALENGLVSIRDKQSEKMETMRKNGKMMEEEHNYLKFVLRQQ  167 (212)
Q Consensus       118 ~~eL~~LE~~Le~~L~~VR~rK~~ll~~l~kk~~~l~een~~L~~~~~~~  167 (212)
                      ++.+.+||+++...+..+.+=|.++.+.+.. ...|.-||..|+..+.+.
T Consensus         7 fd~l~~le~~l~~l~~el~~LK~~~~el~EE-N~~L~iEN~~Lr~~l~~~   55 (110)
T PRK13169          7 FDALDDLEQNLGVLLKELGALKKQLAELLEE-NTALRLENDKLRERLEEL   55 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHh
Confidence            4678899999999999999888877655554 344788889998888753

>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization

Probab=80.84  E-value=12  Score=24.81  Aligned_cols=39  Identities=21%  Similarity=0.268  Sum_probs=33.2

Q ss_pred             HhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 040096          130 NGLVSIRDKQSEKMETMRKNGKMMEEEHNYLKFVLRQQE  168 (212)
Q Consensus       130 ~~L~~VR~rK~~ll~~l~kk~~~l~een~~L~~~~~~~~  168 (212)
                      .+-...|.||...+..|..++..|..+|..|...+....
T Consensus        15 ~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~   53 (64)
T PF00170_consen   15 EAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLK   53 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356778999999999999999999999999998776543

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	212
1tqe_P	93	Mechanism Of Recruitment Of Class Ii Histone Deacet		2e-13
3kov_A	90	Structure Of Mef2a Bound To Dna Reveals A Completel		3e-13
1egw_A	77	Crystal Structure Of Mef2a Core Bound To Dna Length		3e-13
3mu6_A	71	Inhibiting The Binding Of Class Iia Histone Deacety		4e-13
1c7u_A	85	Complex Of The Dna Binding Core Domain Of The Trans		1e-12
1n6j_A	93	Structural Basis Of Sequence-Specific Recruitment O		1e-12
1mnm_A	100	Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLE		4e-10
1k6o_B	103	Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dn		3e-06
1srs_A	92	Serum Response Factor (Srf) Core Complexed With Spe		4e-06

>pdb|1TQE|P Chain P, Mechanism Of Recruitment Of Class Ii Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/98 (41%), Positives = 65/98 (66%), Gaps = 10/98 (10%)
Query: 1  MGRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSP 60
          MGR KI+I RI +  NRQVT++KR+ G++KKA E++VLCD +++LII+ S+ ++  Y   
Sbjct: 1  MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQY--A 58
Query: 61 STSLVDILEQYHRQSGRRLWDPKHENLSNE--IERIKR 96
          ST +  +L +Y   S     +P HE+ +N   +E +KR
Sbjct: 59 STDMDRVLLKYTEYS-----EP-HESRTNTDILETLKR 90

>pdb|3KOV|A Chain A, Structure Of Mef2a Bound To Dna Reveals A Completely Folded Mads-BoxMEF2 DOMAIN THAT RECOGNIZES DNA AND RECRUITS Transcription Co-Factors Length = 90

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 34/70 (48%), Positives = 51/70 (72%), Gaps = 2/70 (2%)
Query: 2  GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPS 61
          GR KI+I RI +  NRQVT++KR+ G++KKA E++VLCD +++LII+ SS K+  Y   S
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY--AS 58
Query: 62 TSLVDILEQY 71
          T +  +L +Y
Sbjct: 59 TDMDKVLLKY 68

>pdb|1EGW|A Chain A, Crystal Structure Of Mef2a Core Bound To Dna Length = 77

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 34/70 (48%), Positives = 51/70 (72%), Gaps = 2/70 (2%)
Query: 2  GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPS 61
          GR KI+I RI +  NRQVT++KR+ G++KKA E++VLCD +++LII+ SS K+  Y   S
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY--AS 58
Query: 62 TSLVDILEQY 71
          T +  +L +Y
Sbjct: 59 TDMDKVLLKY 68

>pdb|3MU6|A Chain A, Inhibiting The Binding Of Class Iia Histone Deacetylases To Myocyte Enhancer Factor-2 By Small Molecules Length = 71

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 34/70 (48%), Positives = 51/70 (72%), Gaps = 2/70 (2%)
Query: 2  GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPS 61
          GR KI+I RI +  NRQVT++KR+ G++KKA E++VLCD +++LII+ SS K+  Y   S
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY--AS 58
Query: 62 TSLVDILEQY 71
          T +  +L +Y
Sbjct: 59 TDMDKVLLKY 68

>pdb|1C7U|A Chain A, Complex Of The Dna Binding Core Domain Of The Transcription Factor Mef2a With A 20mer Oligonucleotide Length = 85

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/70 (48%), Positives = 51/70 (72%), Gaps = 2/70 (2%)
Query: 2  GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPS 61
          GR KI+I RI +  NRQVT++KR+ G++KKA E++VL DA+++LII+ SS K+  Y   S
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLADAEIALIIFNSSNKLFQYA--S 58
Query: 62 TSLVDILEQY 71
          T +  +L +Y
Sbjct: 59 TDMDKVLLKY 68

>pdb|1N6J|A Chain A, Structural Basis Of Sequence-Specific Recruitment Of Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/97 (41%), Positives = 64/97 (65%), Gaps = 10/97 (10%)
Query: 2  GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPS 61
          GR KI+I RI +  NRQVT++KR+ G++KKA E++VLCD +++LII+ S+ ++  Y   S
Sbjct: 1  GRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQY--AS 58
Query: 62 TSLVDILEQYHRQSGRRLWDPKHENLSNE--IERIKR 96
          T +  +L +Y   S     +P HE+ +N   +E +KR
Sbjct: 59 TDMDRVLLKYTEYS-----EP-HESRTNTDILETLKR 89

>pdb|1MNM|A Chain A, Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLEX Crystal Structure Length = 100

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 43/58 (74%)
Query: 3  RGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSP 60
          R KIEIK IEN + R VT+SKR++GI+KKA E++VL   +V L++ + +G ++ + +P
Sbjct: 18 RRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTP 75

>pdb|1K6O|B Chain B, Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dna Complex Length = 103

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 39/58 (67%)
Query: 2  GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCS 59
          GR KI+++ I+N   R  T+SKR+ GI+KKA E++ L   +V L++ + +G ++ + +
Sbjct: 10 GRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT 67

>pdb|1SRS|A Chain A, Serum Response Factor (Srf) Core Complexed With Specific Sre Dna Length = 92

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 39/58 (67%)
Query: 2  GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCS 59
          GR KI+++ I+N   R  T+SKR+ GI+KKA E++ L   +V L++ + +G ++ + +
Sbjct: 11 GRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT 68

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	212
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	6e-36
1egw_A	77	MADS box transcription enhancer factor 2, polypept	2e-34
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	2e-34
1hbx_A	92	SRF, serum response factor; gene regulation, trans	1e-33
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	3e-32
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1 Length = 100

 Score =  121 bits (304), Expect = 6e-36
 Identities = 31/90 (34%), Positives = 51/90 (56%), Gaps = 5/90 (5%)

Query: 1   MGRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSP 60
             R KIEIK IEN + R VT+SKR++GI+KKA E++VL   +V L++ + +G ++ + +P
Sbjct: 16  KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTP 75

Query: 61  STSLVDILEQYHRQSGRRLWDPKHENLSNE 90
                 I+ Q   ++   L         +E
Sbjct: 76  --KFEPIVTQQEGRN---LIQACLNAPDDE 100

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A* Length = 77

 Score =  116 bits (293), Expect = 2e-34
 Identities = 33/75 (44%), Positives = 50/75 (66%), Gaps = 2/75 (2%)

Query: 2  GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPS 61
          GR KI+I RI +  NRQVT++KR+ G++KKA E++VLCD +++LII+ SS K+  Y S  
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60

Query: 62 TSLVDILEQYHRQSG 76
               +L +Y   + 
Sbjct: 61 MD--KVLLKYTEYNE 73

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A Length = 90

 Score =  116 bits (293), Expect = 2e-34
 Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 2/88 (2%)

Query: 2  GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPS 61
          GR KI+I RI +  NRQVT++KR+ G++KKA E++VLCD +++LII+ SS K+  Y S  
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60

Query: 62 TSLVDILEQYHRQSGRRLWDPKHENLSN 89
               +L +Y   +         + +  
Sbjct: 61 MD--KVLLKYTEYNEPHESRTNSDIVEA 86

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A* Length = 92

 Score =  114 bits (288), Expect = 1e-33
 Identities = 22/78 (28%), Positives = 45/78 (57%), Gaps = 2/78 (2%)

Query: 1  MGRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSP 60
           GR KI+++ I+N   R  T+SKR+ GI+KKA E++ L   +V L++ + +G ++ + + 
Sbjct: 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR 69

Query: 61 STSLVDILEQYHRQSGRR 78
             L  ++     ++  +
Sbjct: 70 --KLQPMITSETGKALIQ 85

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1 Length = 103

 Score =  111 bits (280), Expect = 3e-32
 Identities = 22/75 (29%), Positives = 44/75 (58%), Gaps = 2/75 (2%)

Query: 1  MGRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSP 60
           GR KI+++ I+N   R  T+SKR+ GI+KKA E++ L   +V L++ + +G ++ + + 
Sbjct: 9  RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR 68

Query: 61 STSLVDILEQYHRQS 75
             L  ++     ++
Sbjct: 69 --KLQPMITSETGKA 81

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.1 bits (116), Expect = 3e-07
 Identities = 43/235 (18%), Positives = 81/235 (34%), Gaps = 70/235 (29%)

Query: 16  NRQVTYSKRRNGI--LKKAKEI----------TVL----C-DAKVSL-----IIYASSGK 53
           +R   Y K R  +  L+ AK +          T +    C   KV       I + +   
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191

Query: 54  MHDYCSPSTSLVDILEQYHRQSGRRLWDPKHENLSNEIERIKRENDRMQIKLRHLNGEDI 113
               C+   +++++L++   Q      DP   + S+    IK     +Q +LR L     
Sbjct: 192 ----CNSPETVLEMLQKLLYQI-----DPNWTSRSDHSSNIKLRIHSIQAELRRLL---K 239

Query: 114 SSLNPKELIALED--------ALENG---LVSIRDKQ--------SEKMETMRKNGKMME 154
           S      L+ L +        A       L++ R KQ        +    ++  +   + 
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299

Query: 155 EEHN---YLKFV-LRQQEIARQQQE---LAMENSVSAE--------IDNYQRENH 194
            +      LK++  R Q++ R+        +  S+ AE         DN++  N 
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRL--SIIAESIRDGLATWDNWKHVNC 352

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.1 bits (90), Expect = 8e-04
 Identities = 21/155 (13%), Positives = 50/155 (32%), Gaps = 36/155 (23%)

Query: 85  ENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDAL----ENGLVSIR---- 136
           E++ + +            KL  +    ++ L P E   + D L     +  +       
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL 394

Query: 137 ----DKQSEKMETMRK--NGKMMEEEHNYLKFVL--RQQEIARQQQEL-AMENSVSAEID 187
                 +S+ M  + K     ++E++       +     E+  + +   A+  S+   +D
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI---VD 451

Query: 188 NYQRENHHD-----------Y-----AYHVQPIQP 206
           +Y      D           Y      +H++ I+ 
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH 486

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	212
1egw_A	77	MADS box transcription enhancer factor 2, polypept	100.0
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	100.0
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	100.0
1hbx_A	92	SRF, serum response factor; gene regulation, trans	100.0
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	100.0
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	85.6
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	83.68
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	82.91
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	82.63
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	81.97
3nmd_A	72	CGMP dependent protein kinase; leucine zipper, coi	81.27

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*

Probab=100.00  E-value=4.9e-40  Score=230.37  Aligned_cols=73  Identities=45%  Similarity=0.782  Sum_probs=69.3

Q ss_pred             CcccceeEEeCCCccchhhhhhhhchHHHhHHhhhhhcCcceeeEeecCCCCcccccCCCcchhHHHHhhhhhcC
Q 040096            2 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQSG   76 (212)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvtfsKRr~GL~KKA~ELsvLCda~valivfS~~gk~~~~~s~~~~~~~ileRY~~~~~   76 (212)
                      ||+||+|++|||.++|||||+|||+||||||+|||||||||||||||||+||+|+|+|++  |++||+||+..++
T Consensus         1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~~--~~~il~ry~~~~~   73 (77)
T 1egw_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD--MDKVLLKYTEYNE   73 (77)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSC--HHHHHHHHHHC--
T ss_pred             CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCCC--HHHHHHHHHhccC
Confidence            899999999999999999999999999999999999999999999999999999999865  9999999998754

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A

Probab=100.00  E-value=2.3e-39  Score=232.40  Aligned_cols=73  Identities=45%  Similarity=0.782  Sum_probs=70.6

Q ss_pred             CcccceeEEeCCCccchhhhhhhhchHHHhHHhhhhhcCcceeeEeecCCCCcccccCCCcchhHHHHhhhhhcC
Q 040096            2 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQSG   76 (212)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvtfsKRr~GL~KKA~ELsvLCda~valivfS~~gk~~~~~s~~~~~~~ileRY~~~~~   76 (212)
                      ||+||+|++|||.++|||||||||+||||||+||||||||+||||||||+||+|+|+||+  |+.||+||+..+.
T Consensus         1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~~--~~~il~rY~~~~~   73 (90)
T 3p57_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD--MDKVLLKYTEYNE   73 (90)
T ss_dssp             CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESSC--HHHHHHHHHHCCS
T ss_pred             CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCCC--HHHHHHHHHhcCc
Confidence            899999999999999999999999999999999999999999999999999999999965  9999999999765

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1

Probab=100.00  E-value=7.7e-38  Score=228.21  Aligned_cols=71  Identities=41%  Similarity=0.623  Sum_probs=68.7

Q ss_pred             CCcccceeEEeCCCccchhhhhhhhchHHHhHHhhhhhcCcceeeEeecCCCCcccccCCCcchhHHHHhhhh
Q 040096            1 MGRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHR   73 (212)
Q Consensus         1 MgR~Ki~ik~Ien~~~RqvtfsKRr~GL~KKA~ELsvLCda~valivfS~~gk~~~~~s~~~~~~~ileRY~~   73 (212)
                      |||+||+|++|||.++|||||+|||+||||||+||||||||+||||||||+||+|+|+||+  +..||++|..
T Consensus        16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sps--~~~il~r~~G   86 (100)
T 1mnm_A           16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPK--FEPIVTQQEG   86 (100)
T ss_dssp             CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTT--TTHHHHSHHH
T ss_pred             CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCCC--HHHHHHHhhC
Confidence            8999999999999999999999999999999999999999999999999999999999986  9999998854

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*

Probab=100.00  E-value=1.4e-37  Score=224.07  Aligned_cols=70  Identities=31%  Similarity=0.525  Sum_probs=67.8

Q ss_pred             CCcccceeEEeCCCccchhhhhhhhchHHHhHHhhhhhcCcceeeEeecCCCCcccccCCCcchhHHHHhhh
Q 040096            1 MGRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYH   72 (212)
Q Consensus         1 MgR~Ki~ik~Ien~~~RqvtfsKRr~GL~KKA~ELsvLCda~valivfS~~gk~~~~~s~~~~~~~ileRY~   72 (212)
                      |||+||+|++|||.++|||||+|||+||||||+||||||||+||||||||+|++|+|+||+  |..||++|.
T Consensus        10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~~--~~~~i~~~~   79 (92)
T 1hbx_A           10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRK--LQPMITSET   79 (92)
T ss_dssp             CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECGG--GGGGTSSHH
T ss_pred             CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCCC--HHHHHhhhc
Confidence            9999999999999999999999999999999999999999999999999999999999976  999999764

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1

Probab=100.00  E-value=5.7e-37  Score=224.97  Aligned_cols=69  Identities=32%  Similarity=0.534  Sum_probs=67.1

Q ss_pred             CCcccceeEEeCCCccchhhhhhhhchHHHhHHhhhhhcCcceeeEeecCCCCcccccCCCcchhHHHHhh
Q 040096            1 MGRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQY   71 (212)
Q Consensus         1 MgR~Ki~ik~Ien~~~RqvtfsKRr~GL~KKA~ELsvLCda~valivfS~~gk~~~~~s~~~~~~~ileRY   71 (212)
                      |||+||+|++|||.++|+|||+|||+||||||+||||||||+||||||||+|++|+|+||+  |..||+++
T Consensus         9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~~--~~~vi~~~   77 (103)
T 1k6o_B            9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRK--LQPMITSE   77 (103)
T ss_dssp             CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECGG--GGGGTSSH
T ss_pred             CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCcc--HHHHHHhh
Confidence            9999999999999999999999999999999999999999999999999999999999976  99999974

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1

Probab=85.60  E-value=3.2  Score=26.16  Aligned_cols=37  Identities=16%  Similarity=0.209  Sum_probs=31.1

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 040096          131 GLVSIRDKQSEKMETMRKNGKMMEEEHNYLKFVLRQQ  167 (212)
Q Consensus       131 ~L~~VR~rK~~ll~~l~kk~~~l~een~~L~~~~~~~  167 (212)
                      +-..-|.||...++.|..++..|+.+|..|...+...
T Consensus        12 sA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L   48 (55)
T 1dh3_A           12 AARESRRKKKEYVKSLENRVAVLENQNKTLIEELKAL   48 (55)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445688888889999999999999999999887653

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D

Probab=83.68  E-value=5.1  Score=25.80  Aligned_cols=38  Identities=16%  Similarity=0.269  Sum_probs=32.7

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 040096          131 GLVSIRDKQSEKMETMRKNGKMMEEEHNYLKFVLRQQE  168 (212)
Q Consensus       131 ~L~~VR~rK~~ll~~l~kk~~~l~een~~L~~~~~~~~  168 (212)
                      +-.+.|.||.+.+..|..++..|+.+|..|...+....
T Consensus        13 AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~   50 (63)
T 2wt7_A           13 AAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLL   50 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667899999999999999999999999999886643

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D

Probab=82.91  E-value=3.9  Score=26.51  Aligned_cols=38  Identities=8%  Similarity=0.119  Sum_probs=32.7

Q ss_pred             HhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 040096          130 NGLVSIRDKQSEKMETMRKNGKMMEEEHNYLKFVLRQQ  167 (212)
Q Consensus       130 ~~L~~VR~rK~~ll~~l~kk~~~l~een~~L~~~~~~~  167 (212)
                      .+-.+.|.||.+-+..|..++..|..+|..|...+...
T Consensus        19 eAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~L   56 (63)
T 2dgc_A           19 EAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARL   56 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677889999999999999999999999999877653

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=82.63  E-value=6.1  Score=25.18  Aligned_cols=38  Identities=11%  Similarity=0.107  Sum_probs=32.6

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 040096          131 GLVSIRDKQSEKMETMRKNGKMMEEEHNYLKFVLRQQE  168 (212)
Q Consensus       131 ~L~~VR~rK~~ll~~l~kk~~~l~een~~L~~~~~~~~  168 (212)
                      +-.+.|.||.+.+..|..++..|+.+|..|...+....
T Consensus        12 AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~   49 (61)
T 1t2k_D           12 AASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLR   49 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44567899999999999999999999999999886644

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A

Probab=81.97  E-value=6.6  Score=25.12  Aligned_cols=39  Identities=10%  Similarity=0.147  Sum_probs=33.3

Q ss_pred             HhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 040096          130 NGLVSIRDKQSEKMETMRKNGKMMEEEHNYLKFVLRQQE  168 (212)
Q Consensus       130 ~~L~~VR~rK~~ll~~l~kk~~~l~een~~L~~~~~~~~  168 (212)
                      .+-.+-|.||.+.+..|..++..|..+|..|...+....
T Consensus        11 ~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~   49 (62)
T 1jnm_A           11 IAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLR   49 (62)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345677899999999999999999999999999886643

>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}

Probab=81.27  E-value=9.8  Score=25.40  Aligned_cols=52  Identities=17%  Similarity=0.224  Sum_probs=38.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 040096          112 DISSLNPKELIALEDALENGLVSIRDKQSEKMETMRKNGKMMEEEHNYLKFVLRQ  166 (212)
Q Consensus       112 dL~~Ls~~eL~~LE~~Le~~L~~VR~rK~~ll~~l~kk~~~l~een~~L~~~~~~  166 (212)
                      .+++++.  +.+|+..|......||.+ ..+|+.+.+.....+++...|+..+..
T Consensus        14 ~~~~mgt--i~eLq~~L~~K~eELr~k-d~~I~eLEk~L~ekd~eI~~LqseLDK   65 (72)
T 3nmd_A           14 SIEGRGS--LRDLQYALQEKIEELRQR-DALIDELELELDQKDELIQMLQNELDK   65 (72)
T ss_dssp             -----CH--HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcccCCc--HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444  888899999999999877 566888888888888888888877654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	212
d1egwa_	71	d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {	2e-31
d1srsa_	84	d.88.1.1 (A:) Serum response factor (SRF) core {Hu	1e-30
d1mnma_	85	d.88.1.1 (A:) MCM1 transcriptional regulator {Bake	3e-30

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (269), Expect = 2e-31
 Identities = 33/72 (45%), Positives = 49/72 (68%), Gaps = 2/72 (2%)

Query: 2  GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPS 61
          GR KI+I RI +  NRQVT++KR+ G++KKA E++VLCD +++LII+ SS K+  Y S  
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60

Query: 62 TSLVDILEQYHR 73
               +L +Y  
Sbjct: 61 MD--KVLLKYTE 70

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (265), Expect = 1e-30
 Identities = 21/75 (28%), Positives = 43/75 (57%), Gaps = 2/75 (2%)

Query: 1  MGRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSP 60
           GR KI+++ I+N   R  T+SKR+ GI+KKA E++ L   +V L++ + +G ++ + + 
Sbjct: 2  RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR 61

Query: 61 STSLVDILEQYHRQS 75
                ++     ++
Sbjct: 62 KLQ--PMITSETGKA 74

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  104 bits (262), Expect = 3e-30
 Identities = 29/74 (39%), Positives = 48/74 (64%), Gaps = 2/74 (2%)

Query: 2  GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPS 61
           R KIEIK IEN + R VT+SKR++GI+KKA E++VL   +V L++ + +G ++ + +P 
Sbjct: 3  ERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPK 62

Query: 62 TSLVDILEQYHRQS 75
               I+ Q   ++
Sbjct: 63 FE--PIVTQQEGRN 74

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	212
d1egwa_	71	Myocyte enhancer factor Mef2a core {Human (Homo sa	100.0
d1srsa_	84	Serum response factor (SRF) core {Human (Homo sapi	100.0
d1mnma_	85	MCM1 transcriptional regulator {Baker's yeast (Sac	100.0

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.8e-39  Score=219.29  Aligned_cols=70  Identities=47%  Similarity=0.824  Sum_probs=68.5

Q ss_pred             CcccceeEEeCCCccchhhhhhhhchHHHhHHhhhhhcCcceeeEeecCCCCcccccCCCcchhHHHHhhhh
Q 040096            2 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHR   73 (212)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvtfsKRr~GL~KKA~ELsvLCda~valivfS~~gk~~~~~s~~~~~~~ileRY~~   73 (212)
                      ||+||+|++|||+.+|+|||||||+||||||.||||||||+||||||||+|++|+|+||+  +++|++||+.
T Consensus         1 GR~Ki~ik~Ie~~~~R~vTFsKRk~GL~KKa~ELs~LC~~~valiv~s~~gk~~~f~s~~--~~~vl~ry~~   70 (71)
T d1egwa_           1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD--MDKVLLKYTE   70 (71)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSC--HHHHHHHHHH
T ss_pred             CCccceEEeccCCchheeehhHhhhhHHHHHHHHhhccCCcEEEEEEcCCCCEEEeeCCC--HHHHHHHHhc
Confidence            899999999999999999999999999999999999999999999999999999999976  9999999975

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.8e-37  Score=215.45  Aligned_cols=72  Identities=31%  Similarity=0.512  Sum_probs=69.3

Q ss_pred             CCcccceeEEeCCCccchhhhhhhhchHHHhHHhhhhhcCcceeeEeecCCCCcccccCCCcchhHHHHhhhhh
Q 040096            1 MGRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQ   74 (212)
Q Consensus         1 MgR~Ki~ik~Ien~~~RqvtfsKRr~GL~KKA~ELsvLCda~valivfS~~gk~~~~~s~~~~~~~ileRY~~~   74 (212)
                      +||+||+|++|||+.+|+|||+|||.||||||+||||||||+||||||||+|++|+|+||+  ++.|+++|+..
T Consensus         2 ~GR~Ki~i~~Ie~~~~R~vTFsKRr~GL~KKa~ELs~Lc~~~v~liv~s~~gk~~~f~s~~--~~~vi~~~~~~   73 (84)
T d1srsa_           2 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRK--LQPMITSETGK   73 (84)
T ss_dssp             CCCCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTCCEEEEECGG--GHHHHSSHHHH
T ss_pred             CCCceeeEEeecCcchhhhhhHHhhhhHHHHHHHHhcccCCcEEEEEEcCCCCEEEeeCCC--HHHHHHHHHHH
Confidence            6999999999999999999999999999999999999999999999999999999999976  99999999753

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.7e-37  Score=215.10  Aligned_cols=72  Identities=40%  Similarity=0.632  Sum_probs=69.5

Q ss_pred             CcccceeEEeCCCccchhhhhhhhchHHHhHHhhhhhcCcceeeEeecCCCCcccccCCCcchhHHHHhhhhhc
Q 040096            2 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQS   75 (212)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvtfsKRr~GL~KKA~ELsvLCda~valivfS~~gk~~~~~s~~~~~~~ileRY~~~~   75 (212)
                      ||+||+|++|+|+.+|+|||||||+||||||+||||||||+||||||||+|++|+|+||+  |+.||+||...+
T Consensus         3 ~R~Ki~i~~I~~~~~R~vTFsKRr~GL~KKa~ELsvLc~a~vaviv~s~~gk~~~f~sp~--v~~vl~r~~~~~   74 (85)
T d1mnma_           3 ERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPK--FEPIVTQQEGRN   74 (85)
T ss_dssp             CCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTT--TTHHHHSHHHHH
T ss_pred             CccceEEEEecCCchhhhhhHHHHhhHHHHHHHHhccCCCcEEEEEEcCCCCEEeccCCC--HHHHHHHHhccc
Confidence            899999999999999999999999999999999999999999999999999999999987  999999998643