Citrus Sinensis ID: 040123

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80----
Protein Sequence
MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSSNRTL
Secondary Structure (PSIPRED)
cccccccHHHccccccccccHHHHHHHHHHHHHHHHHHHccccccEEEEccccccEEccccccccccccHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHccccEEEEccccHccEEEccccccHHcHccHHHEccccccEEcc
Coil and Loop (DISEMBL)
mergslfcvlrdddeaiELNWTKRVSIVKSVAHALSYlhhdctlsvvhrdissnnilldlnleasvadfgtarllhvdssnrtl
Flexible Loop (DISEMBL)
mergslfcvlrdddeaieLNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADfgtarllhvdssnrtl
Low Complexity Region (SEG)
MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRdissnnilldlnlEASVADFGTARLLHVDSSNRTL
Disordered region (IsUnstruct)
*****LFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH********
Disordered Region (DISOPRED)
*ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVD******
Disordered Region (DISEMBL)
MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSSNRTL
Disordered Region (DISPRO)
***GSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDS*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSSNRTL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	84	2.2.26 [Sep-21-2011]
Q8VZG8	1045	Probable LRR receptor-lik	yes	no	0.964	0.077	0.641	8e-24
Q9LP24	1120	Probable leucine-rich rep	no	no	0.964	0.072	0.617	1e-22
C0LGF4	591	LRR receptor-like serine/	no	no	0.833	0.118	0.533	8e-16
Q6XAT2	967	LRR receptor-like serine/	no	no	0.869	0.075	0.493	1e-15
C0LGW6	966	LRR receptor-like serine/	no	no	0.869	0.075	0.493	3e-15
C0LGL9	589	LRR receptor-like serine/	no	no	0.833	0.118	0.52	6e-15
O22476	1196	Protein BRASSINOSTEROID I	no	no	0.892	0.062	0.5	6e-15
Q9M0G7	1013	Leucine-rich repeat recep	no	no	0.678	0.056	0.596	8e-15
Q9FHG4	681	Probable L-type lectin-do	no	no	0.952	0.117	0.475	8e-15
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.928	0.070	0.475	2e-14

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score =  108 bits (271), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 52/81 (64%), Positives = 66/81 (81%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           MERGSL  VL +DDEA +L+W KR+++VK VAHALSY+HHD + ++VHRDISS NILL  
Sbjct: 856 MERGSLRKVLENDDEAKKLDWGKRINVVKGVAHALSYMHHDRSPAIVHRDISSGNILLGE 915

Query: 61  NLEASVADFGTARLLHVDSSN 81
           + EA ++DFGTA+LL  DSSN
Sbjct: 916 DYEAKISDFGTAKLLKPDSSN 936

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score =  105 bits (261), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 50/81 (61%), Positives = 63/81 (77%)

Query: 1    MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
            ME+GSL  +L +D+EA  L WTKR+++VK VAHALSY+HHD    +VHRDISS NILLD 
Sbjct: 932  MEKGSLNKLLANDEEAKRLTWTKRINVVKGVAHALSYMHHDRITPIVHRDISSGNILLDN 991

Query: 61   NLEASVADFGTARLLHVDSSN 81
            +  A ++DFGTA+LL  DSSN
Sbjct: 992  DYTAKISDFGTAKLLKTDSSN 1012

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGF4|FEI1_ARATH LRR receptor-like serine/threonine-protein kinase FEI 1 OS=Arabidopsis thaliana GN=FEI1 PE=1 SV=1

 Score = 82.4 bits (202), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 40/75 (53%), Positives = 53/75 (70%), Gaps = 5/75 (6%)

Query: 14  DEAI-----ELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVAD 68
           DEA+     +L+W  RV+I+   A  LSYLHHDC+  ++HRDI S+NILLD NLEA V+D
Sbjct: 388 DEALHERGEQLDWDSRVNIIIGAAKGLSYLHHDCSPRIIHRDIKSSNILLDGNLEARVSD 447

Query: 69  FGTARLLHVDSSNRT 83
           FG A+LL  + S+ T
Sbjct: 448 FGLAKLLEDEESHIT 462

Involved in the signaling pathway that regulates cell wall function, including cellulose biosynthesis, likely via an 1-aminocyclopropane-1-carboxylic acid (ACC)-mediated signal (a precursor of ethylene).

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q6XAT2|ERL2_ARATH LRR receptor-like serine/threonine-protein kinase ERL2 OS=Arabidopsis thaliana GN=ERL2 PE=2 SV=1

 Score = 82.0 bits (201), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/73 (49%), Positives = 50/73 (68%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           ME GSL+ +L    + ++L+W  R+ I    A  L+YLHHDCT  ++HRDI S+NILLD 
Sbjct: 727 MENGSLWDLLHGPGKKVKLDWETRLKIAVGAAQGLAYLHHDCTPRIIHRDIKSSNILLDG 786

Query: 61  NLEASVADFGTAR 73
           N EA ++DFG A+
Sbjct: 787 NFEARLSDFGIAK 799

Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ERL1 and ER.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGW6|ERL1_ARATH LRR receptor-like serine/threonine-protein kinase ERL1 OS=Arabidopsis thaliana GN=ERL1 PE=2 SV=1

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/73 (49%), Positives = 50/73 (68%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           ME GSL+ +L    + ++L+W  R+ I    A  L+YLHHDCT  ++HRDI S+NILLD 
Sbjct: 724 MENGSLWDLLHGSLKKVKLDWETRLKIAVGAAQGLAYLHHDCTPRIIHRDIKSSNILLDE 783

Query: 61  NLEASVADFGTAR 73
           N EA ++DFG A+
Sbjct: 784 NFEAHLSDFGIAK 796

Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ER and ERL2.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGL9|FEI2_ARATH LRR receptor-like serine/threonine-protein kinase FEI 2 OS=Arabidopsis thaliana GN=FEI2 PE=1 SV=1

 Score = 79.3 bits (194), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 39/75 (52%), Positives = 53/75 (70%), Gaps = 5/75 (6%)

Query: 14  DEAI-----ELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVAD 68
           DEA+     +L+W  RV+I+   A  L+YLHHDC+  ++HRDI S+NILLD NLEA V+D
Sbjct: 386 DEALHKRGEQLDWDSRVNIIIGAAKGLAYLHHDCSPRIIHRDIKSSNILLDGNLEARVSD 445

Query: 69  FGTARLLHVDSSNRT 83
           FG A+LL  + S+ T
Sbjct: 446 FGLAKLLEDEESHIT 460

Involved in the signaling pathway that regulates cell wall function, including cellulose biosynthesis, likely via an 1-aminocyclopropane-1-carboxylic acid (ACC)-mediated signal (a precursor of ethylene).

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O22476|BRI1_ARATH Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidopsis thaliana GN=BRI1 PE=1 SV=1

 Score = 79.3 bits (194), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 38/76 (50%), Positives = 54/76 (71%), Gaps = 1/76 (1%)

Query: 1    MERGSLFCVLRDDDEA-IELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLD 59
            M+ GSL  VL D  +A ++LNW+ R  I    A  L++LHH+C+  ++HRD+ S+N+LLD
Sbjct: 959  MKYGSLEDVLHDPKKAGVKLNWSTRRKIAIGSARGLAFLHHNCSPHIIHRDMKSSNVLLD 1018

Query: 60   LNLEASVADFGTARLL 75
             NLEA V+DFG ARL+
Sbjct: 1019 ENLEARVSDFGMARLM 1034

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. Binds brassinolide, and less effectively castasterone, but not 2,3,22,23-O-tetramethylbrassinolide or ecdysone. May be involved in a feedback regulation of brassinosteroid biosynthesis. Phosphorylates BRI1-associated receptor kinase 1 (BAK1), Transthyretin-Like protein (TTL) and SERK1 on 'Ser-299' and 'Thr-462' in vitro. May have a guanylyl cyclase activity.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9M0G7|PXL2_ARATH Leucine-rich repeat receptor-like protein kinase PXL2 OS=Arabidopsis thaliana GN=PXL2 PE=2 SV=1

 Score = 79.0 bits (193), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 43/57 (75%)

Query: 19  LNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL 75
           ++W  R +I   VAH L+YLHHDC   V+HRDI SNNILLD NL+A +ADFG AR++
Sbjct: 800 VDWVSRYNIALGVAHGLAYLHHDCHPPVIHRDIKSNNILLDANLDARIADFGLARMM 856

Involved in the regulation of procambium maintenance and polarity during vascular-tissue development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FHG4|LRKS7_ARATH Probable L-type lectin-domain containing receptor kinase S.7 OS=Arabidopsis thaliana GN=LECRKS7 PE=2 SV=1

 Score = 79.0 bits (193), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 39/82 (47%), Positives = 54/82 (65%), Gaps = 2/82 (2%)

Query: 1   MERGSLFCVLRDDDE--AIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILL 58
           M  GSL  +L  + +  A+ L+W+ R++I   +A ALSYLHH+C   VVHRDI ++NI+L
Sbjct: 442 MPNGSLDKILYQESQTGAVALDWSHRLNIAIGLASALSYLHHECEQQVVHRDIKTSNIML 501

Query: 59  DLNLEASVADFGTARLLHVDSS 80
           D+N  A + DFG ARL   D S
Sbjct: 502 DINFNARLGDFGLARLTEHDKS 523

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/80 (47%), Positives = 49/80 (61%), Gaps = 2/80 (2%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           M +GSL  +L D   +  L+W+KR  I    A  L+YLHHDC   + HRDI SNNILLD 
Sbjct: 885 MPKGSLGEILHD--PSCNLDWSKRFKIALGAAQGLAYLHHDCKPRIFHRDIKSNNILLDD 942

Query: 61  NLEASVADFGTARLLHVDSS 80
             EA V DFG A+++ +  S
Sbjct: 943 KFEAHVGDFGLAKVIDMPHS 962

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	84
296082878	1699	unnamed protein product [Vitis vinifera]	1.0	0.049	0.726	2e-29
359488981	757	PREDICTED: probable LRR receptor-like se	1.0	0.110	0.726	2e-29
359488983	758	PREDICTED: probable LRR receptor-like se	1.0	0.110	0.726	3e-29
225452751	878	PREDICTED: probable leucine-rich repeat	1.0	0.095	0.690	4e-28
255563466	427	conserved hypothetical protein [Ricinus	1.0	0.196	0.678	1e-27
147834735	513	hypothetical protein VITISV_033633 [Viti	1.0	0.163	0.702	3e-27
147834736	622	hypothetical protein VITISV_033634 [Viti	1.0	0.135	0.678	5e-27
225452698	727	PREDICTED: probable LRR receptor-like se	1.0	0.115	0.678	2e-26
296085303	789	unnamed protein product [Vitis vinifera]	1.0	0.106	0.666	2e-26
359484066	843	PREDICTED: probable LRR receptor-like se	1.0	0.099	0.666	3e-26

>gi|296082878|emb|CBI22179.3| unnamed protein product [Vitis vinifera]

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 61/84 (72%), Positives = 75/84 (89%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           ME+GSL+C+LRD+ EA+EL+W KRV++VKS+A+ALSY+HHDC L ++HRDISSNNILLD 
Sbjct: 845 MEKGSLYCMLRDEVEAVELDWIKRVNVVKSIANALSYMHHDCDLPIIHRDISSNNILLDS 904

Query: 61  NLEASVADFGTARLLHVDSSNRTL 84
            LEA V+DFGTARLL  DSSNRTL
Sbjct: 905 KLEAFVSDFGTARLLDNDSSNRTL 928

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488981|ref|XP_002275364.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 61/84 (72%), Positives = 75/84 (89%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           ME+GSL+C+LRD+ EA+EL+W KRV++VKS+A+ALSY+HHDC L ++HRDISSNNILLD 
Sbjct: 546 MEKGSLYCMLRDEVEAVELDWIKRVNVVKSIANALSYMHHDCDLPIIHRDISSNNILLDS 605

Query: 61  NLEASVADFGTARLLHVDSSNRTL 84
            LEA V+DFGTARLL  DSSNRTL
Sbjct: 606 KLEAFVSDFGTARLLDNDSSNRTL 629

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488983|ref|XP_002277433.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 61/84 (72%), Positives = 75/84 (89%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           ME+GSL+C+LRD+ EA+EL+W KRV++VKS+A+ALSY+HHDC L ++HRDISSNNILLD 
Sbjct: 547 MEKGSLYCMLRDEVEAVELDWIKRVNVVKSIANALSYMHHDCDLPIIHRDISSNNILLDS 606

Query: 61  NLEASVADFGTARLLHVDSSNRTL 84
            LEA V+DFGTARLL  DSSNRTL
Sbjct: 607 KLEAFVSDFGTARLLDNDSSNRTL 630

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452751|ref|XP_002277606.1| PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710-like [Vitis vinifera]

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 58/84 (69%), Positives = 73/84 (86%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           ME+GSL+C+LRD+ E ++L+W KRV++VK +A+ALSY+HHD TL ++HRDISSNNILLD 
Sbjct: 667 MEKGSLYCMLRDEVEVVQLDWIKRVNVVKGIANALSYMHHDSTLPIIHRDISSNNILLDS 726

Query: 61  NLEASVADFGTARLLHVDSSNRTL 84
            LEA VADFGTARLL  DSSN+TL
Sbjct: 727 KLEAFVADFGTARLLDPDSSNQTL 750

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563466|ref|XP_002522735.1| conserved hypothetical protein [Ricinus communis] gi|223537973|gb|EEF39586.1| conserved hypothetical protein [Ricinus communis]

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 57/84 (67%), Positives = 74/84 (88%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           ++RG+LFCVLR+D EA+EL+W+KRV+IVK +AHALSY+HHDC+  +VHRDISSNNILL+ 
Sbjct: 272 LQRGNLFCVLRNDVEAVELDWSKRVNIVKGIAHALSYMHHDCSPPIVHRDISSNNILLNS 331

Query: 61  NLEASVADFGTARLLHVDSSNRTL 84
            +E  ++DFGTARLL+ DSSN TL
Sbjct: 332 EMEGFMSDFGTARLLNPDSSNNTL 355

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147834735|emb|CAN59749.1| hypothetical protein VITISV_033633 [Vitis vinifera]

 Score =  125 bits (314), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 59/84 (70%), Positives = 72/84 (85%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           M RGSL+C+L D  EA+EL+W KRV+IVK++AHALSY+HHDCT S++HRDISS+NILLD 
Sbjct: 412 MGRGSLYCMLSDAVEAVELDWVKRVNIVKNMAHALSYMHHDCTPSIIHRDISSSNILLDS 471

Query: 61  NLEASVADFGTARLLHVDSSNRTL 84
            LE  V+DFGTARLL  DSSN+TL
Sbjct: 472 KLEGFVSDFGTARLLDPDSSNQTL 495

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147834736|emb|CAN59750.1| hypothetical protein VITISV_033634 [Vitis vinifera]

 Score =  124 bits (312), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 57/84 (67%), Positives = 73/84 (86%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           MERGSLFC+L  + EA+EL+WTKR+++VKS+AHALSY+HHDC+  ++HRDISSNN+LL+ 
Sbjct: 534 MERGSLFCMLSHEVEALELDWTKRLNVVKSIAHALSYMHHDCSPPIIHRDISSNNVLLNS 593

Query: 61  NLEASVADFGTARLLHVDSSNRTL 84
            LEA V+DFGTARLL  DSS +TL
Sbjct: 594 QLEAFVSDFGTARLLDPDSSIQTL 617

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452698|ref|XP_002276923.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 57/84 (67%), Positives = 73/84 (86%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           MERGSLFC+L  + EA+EL+WTKR+++VKS+AHALSY+HHDC+  ++HRDISSNN+LL+ 
Sbjct: 513 MERGSLFCMLSHEVEALELDWTKRLNVVKSIAHALSYMHHDCSPPIIHRDISSNNVLLNS 572

Query: 61  NLEASVADFGTARLLHVDSSNRTL 84
            LEA V+DFGTARLL  DSS +TL
Sbjct: 573 QLEAFVSDFGTARLLDPDSSIQTL 596

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085303|emb|CBI29035.3| unnamed protein product [Vitis vinifera]

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 56/84 (66%), Positives = 72/84 (85%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           M RGSL+CVL ++ EA+EL+W KRV++VKS+ HA+ Y+HHDCT  ++HRDISSNNILLD 
Sbjct: 578 MGRGSLYCVLSNEVEALELDWIKRVNVVKSIVHAVCYMHHDCTPPIIHRDISSNNILLDS 637

Query: 61  NLEASVADFGTARLLHVDSSNRTL 84
            L+A ++DFGTARLLH DSSN+TL
Sbjct: 638 KLDAFLSDFGTARLLHPDSSNQTL 661

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484066|ref|XP_002271307.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 56/84 (66%), Positives = 72/84 (85%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           M RGSL+CVL ++ EA+EL+W KRV++VKS+ HA+ Y+HHDCT  ++HRDISSNNILLD 
Sbjct: 632 MGRGSLYCVLSNEVEALELDWIKRVNVVKSIVHAVCYMHHDCTPPIIHRDISSNNILLDS 691

Query: 61  NLEASVADFGTARLLHVDSSNRTL 84
            L+A ++DFGTARLLH DSSN+TL
Sbjct: 692 KLDAFLSDFGTARLLHPDSSNQTL 715

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	84
TAIR|locus:2138268	1045	AT4G08850 [Arabidopsis thalian	0.964	0.077	0.543	4.9e-17
TAIR|locus:2011339	1120	AT1G35710 [Arabidopsis thalian	0.964	0.072	0.506	1e-15
TAIR|locus:2182855	967	ERL2 "ERECTA-like 2" [Arabidop	0.869	0.075	0.369	1.2e-08
TAIR|locus:2162212	681	AT5G55830 [Arabidopsis thalian	0.952	0.117	0.390	1.2e-08
TAIR|locus:2206179	592	FEI1 "FEI 1" [Arabidopsis thal	0.785	0.111	0.409	1.7e-08
TAIR|locus:2167948	966	ERL1 "ERECTA-like 1" [Arabidop	0.869	0.075	0.369	2e-08
TAIR|locus:2058759	589	FEI2 "FEI 2" [Arabidopsis thal	0.928	0.132	0.387	2.7e-08
TAIR|locus:2005498	1196	BRI1 "BRASSINOSTEROID INSENSIT	0.892	0.062	0.394	5.3e-08
TAIR|locus:2123071	636	CRK33 "cysteine-rich RLK (RECE	0.75	0.099	0.396	6.3e-08
TAIR|locus:2007918	1088	PEPR2 "PEP1 receptor 2" [Arabi	0.964	0.074	0.376	7.7e-08

TAIR|locus:2138268 AT4G08850 [Arabidopsis thaliana (taxid:3702)]

 Score = 222 (83.2 bits), Expect = 4.9e-17, P = 4.9e-17
 Identities = 44/81 (54%), Positives = 57/81 (70%)

Query:     1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRXXXXXXXXXXX 60
             MERGSL  VL +DDEA +L+W KR+++VK VAHALSY+HHD + ++VHR           
Sbjct:   856 MERGSLRKVLENDDEAKKLDWGKRINVVKGVAHALSYMHHDRSPAIVHRDISSGNILLGE 915

Query:    61 XXEASVADFGTARLLHVDSSN 81
               EA ++DFGTA+LL  DSSN
Sbjct:   916 DYEAKISDFGTAKLLKPDSSN 936

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0006995 "cellular response to nitrogen starvation" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

TAIR|locus:2011339 AT1G35710 [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 1.0e-15, P = 1.0e-15
 Identities = 41/81 (50%), Positives = 53/81 (65%)

Query:     1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRXXXXXXXXXXX 60
             ME+GSL  +L +D+EA  L WTKR+++VK VAHALSY+HHD    +VHR           
Sbjct:   932 MEKGSLNKLLANDEEAKRLTWTKRINVVKGVAHALSYMHHDRITPIVHRDISSGNILLDN 991

Query:    61 XXEASVADFGTARLLHVDSSN 81
                A ++DFGTA+LL  DSSN
Sbjct:   992 DYTAKISDFGTAKLLKTDSSN 1012

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

TAIR|locus:2182855 ERL2 "ERECTA-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 143 (55.4 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 27/73 (36%), Positives = 40/73 (54%)

Query:     1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRXXXXXXXXXXX 60
             ME GSL+ +L    + ++L+W  R+ I    A  L+YLHHDCT  ++HR           
Sbjct:   727 MENGSLWDLLHGPGKKVKLDWETRLKIAVGAAQGLAYLHHDCTPRIIHRDIKSSNILLDG 786

Query:    61 XXEASVADFGTAR 73
               EA ++DFG A+
Sbjct:   787 NFEARLSDFGIAK 799

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010103 "stomatal complex morphogenesis" evidence=IGI;RCA

GO:0009553 "embryo sac development" evidence=IGI

GO:0048481 "ovule development" evidence=IGI;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009686 "gibberellin biosynthetic process" evidence=RCA

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0009886 "post-embryonic morphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

GO:0048608 "reproductive structure development" evidence=RCA

TAIR|locus:2162212 AT5G55830 [Arabidopsis thaliana (taxid:3702)]

 Score = 141 (54.7 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 32/82 (39%), Positives = 43/82 (52%)

Query:     1 MERGSLFCVLRDDDE--AIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRXXXXXXXXX 58
             M  GSL  +L  + +  A+ L+W+ R++I   +A ALSYLHH+C   VVHR         
Sbjct:   442 MPNGSLDKILYQESQTGAVALDWSHRLNIAIGLASALSYLHHECEQQVVHRDIKTSNIML 501

Query:    59 XXXXEASVADFGTARLLHVDSS 80
                  A + DFG ARL   D S
Sbjct:   502 DINFNARLGDFGLARLTEHDKS 523

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

TAIR|locus:2206179 FEI1 "FEI 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 1.7e-08, P = 1.7e-08
 Identities = 27/66 (40%), Positives = 38/66 (57%)

Query:    18 ELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRXXXXXXXXXXXXXEASVADFGTARLLHV 77
             +L+W  RV+I+   A  LSYLHHDC+  ++HR             EA V+DFG A+LL  
Sbjct:   398 QLDWDSRVNIIIGAAKGLSYLHHDCSPRIIHRDIKSSNILLDGNLEARVSDFGLAKLLED 457

Query:    78 DSSNRT 83
             + S+ T
Sbjct:   458 EESHIT 463

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009664 "plant-type cell wall organization" evidence=RCA;IMP

GO:0009826 "unidimensional cell growth" evidence=IMP

GO:0016301 "kinase activity" evidence=IMP

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0000272 "polysaccharide catabolic process" evidence=RCA

GO:0005982 "starch metabolic process" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0030243 "cellulose metabolic process" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2167948 ERL1 "ERECTA-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 141 (54.7 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 27/73 (36%), Positives = 40/73 (54%)

Query:     1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRXXXXXXXXXXX 60
             ME GSL+ +L    + ++L+W  R+ I    A  L+YLHHDCT  ++HR           
Sbjct:   724 MENGSLWDLLHGSLKKVKLDWETRLKIAVGAAQGLAYLHHDCTPRIIHRDIKSSNILLDE 783

Query:    61 XXEASVADFGTAR 73
               EA ++DFG A+
Sbjct:   784 NFEAHLSDFGIAK 796

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010103 "stomatal complex morphogenesis" evidence=IGI;RCA

GO:0009553 "embryo sac development" evidence=IGI

GO:0048481 "ovule development" evidence=IGI;RCA

GO:0016020 "membrane" evidence=IDA

GO:0001708 "cell fate specification" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0009886 "post-embryonic morphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0048441 "petal development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

TAIR|locus:2058759 FEI2 "FEI 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 2.7e-08, P = 2.7e-08
 Identities = 31/80 (38%), Positives = 43/80 (53%)

Query:     4 GSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRXXXXXXXXXXXXXE 63
             GSL   L    E  +L+W  RV+I+   A  L+YLHHDC+  ++HR             E
Sbjct:   383 GSLDEALHKRGE--QLDWDSRVNIIIGAAKGLAYLHHDCSPRIIHRDIKSSNILLDGNLE 440

Query:    64 ASVADFGTARLLHVDSSNRT 83
             A V+DFG A+LL  + S+ T
Sbjct:   441 ARVSDFGLAKLLEDEESHIT 460

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS;IDA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009664 "plant-type cell wall organization" evidence=RCA;IMP

GO:0009826 "unidimensional cell growth" evidence=IMP

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0000272 "polysaccharide catabolic process" evidence=RCA

GO:0005982 "starch metabolic process" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2005498 BRI1 "BRASSINOSTEROID INSENSITIVE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 138 (53.6 bits), Expect = 5.3e-08, P = 5.3e-08
 Identities = 30/76 (39%), Positives = 43/76 (56%)

Query:     1 MERGSLFCVLRDDDEA-IELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRXXXXXXXXXX 59
             M+ GSL  VL D  +A ++LNW+ R  I    A  L++LHH+C+  ++HR          
Sbjct:   959 MKYGSLEDVLHDPKKAGVKLNWSTRRKIAIGSARGLAFLHHNCSPHIIHRDMKSSNVLLD 1018

Query:    60 XXXEASVADFGTARLL 75
                EA V+DFG ARL+
Sbjct:  1019 ENLEARVSDFGMARLM 1034

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0009826 "unidimensional cell growth" evidence=IMP

GO:0016301 "kinase activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

GO:0010224 "response to UV-B" evidence=IGI

GO:0005768 "endosome" evidence=IDA

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0010268 "brassinosteroid homeostasis" evidence=IEP

GO:0004674 "protein serine/threonine kinase activity" evidence=IDA

GO:0043234 "protein complex" evidence=IPI

GO:0004672 "protein kinase activity" evidence=IDA

GO:0060548 "negative regulation of cell death" evidence=IMP

GO:1900140 "regulation of seedling development" evidence=IMP

GO:0009911 "positive regulation of flower development" evidence=IGI

GO:0009742 "brassinosteroid mediated signaling pathway" evidence=IEP;IMP

GO:0010584 "pollen exine formation" evidence=IMP

GO:0048657 "tapetal cell differentiation" evidence=IMP

GO:0048366 "leaf development" evidence=IMP

GO:0005496 "steroid binding" evidence=IDA

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0016310 "phosphorylation" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

GO:0009729 "detection of brassinosteroid stimulus" evidence=IMP

TAIR|locus:2123071 CRK33 "cysteine-rich RLK (RECEPTOR-like protein kinase) 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 134 (52.2 bits), Expect = 6.3e-08, P = 6.3e-08
 Identities = 25/63 (39%), Positives = 32/63 (50%)

Query:    18 ELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRXXXXXXXXXXXXXEASVADFGTARLLHV 77
             +L+W KR  I+   A  + YLHHD  L ++HR             E  VADFG AR+  V
Sbjct:   414 QLDWAKRYKIIVGTARGILYLHHDSPLKIIHRDLKASNILLDAEMEPKVADFGMARIFRV 473

Query:    78 DSS 80
             D S
Sbjct:   474 DQS 476

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2007918 PEPR2 "PEP1 receptor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 7.7e-08, P = 7.7e-08
 Identities = 32/85 (37%), Positives = 45/85 (52%)

Query:     1 MERGSLFCVLR--DDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRXXXXXXXXX 58
             M  GSL  VL   +  EA+ L+W+ R +I   ++H L+YLHHDC   ++HR         
Sbjct:   871 MPNGSLHDVLHRGNQGEAV-LDWSARFNIALGISHGLAYLHHDCHPPIIHRDIKPENILM 929

Query:    59 XXXXEASVADFGTARLLHVDSSNRT 83
                 E  + DFG AR+L  DS+  T
Sbjct:   930 DSDMEPHIGDFGLARILD-DSTVST 953

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0042277 "peptide binding" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00020915001 SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (712 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	84
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	9e-13
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	2e-12
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	3e-12
cd05034	261	cd05034, PTKc_Src_like, Catalytic domain of Src ki	8e-12
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	8e-12
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	1e-11
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	3e-11
cd05065	269	cd05065, PTKc_EphR_B, Catalytic domain of the Prot	6e-11
cd05033	266	cd05033, PTKc_EphR, Catalytic domain of Ephrin Rec	6e-11
cd05063	268	cd05063, PTKc_EphR_A2, Catalytic domain of the Pro	2e-10
cd07840	287	cd07840, STKc_CDK9_like, Catalytic domain of Cycli	2e-10
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	4e-10
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	5e-10
cd06614	286	cd06614, STKc_PAK, Catalytic domain of the Protein	8e-10
cd05581	280	cd05581, STKc_PDK1, Catalytic domain of the Protei	1e-09
cd05148	261	cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro	1e-09
cd05066	267	cd05066, PTKc_EphR_A, Catalytic domain of the Prot	2e-09
cd06623	264	cd06623, PKc_MAPKK_plant_like, Catalytic domain of	3e-09
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	1e-08
cd05067	260	cd05067, PTKc_Lck_Blk, Catalytic domain of the Pro	1e-08
cd05070	260	cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Pro	2e-08
cd06917	277	cd06917, STKc_NAK1_like, Catalytic domain of Funga	3e-08
cd07841	298	cd07841, STKc_CDK7, Catalytic domain of the Serine	3e-08
cd05069	260	cd05069, PTKc_Yes, Catalytic domain of the Protein	5e-08
cd05068	261	cd05068, PTKc_Frk_like, Catalytic domain of Fyn-re	8e-08
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	9e-08
cd05071	262	cd05071, PTKc_Src, Catalytic domain of the Protein	1e-07
cd06605	265	cd06605, PKc_MAPKK, Catalytic domain of the dual-s	1e-07
cd06612	256	cd06612, STKc_MST1_2, Catalytic domain of the Prot	1e-07
cd06609	274	cd06609, STKc_MST3_like, Catalytic domain of Mamma	2e-07
cd05052	263	cd05052, PTKc_Abl, Catalytic domain of the Protein	3e-07
cd06617	283	cd06617, PKc_MKK3_6, Catalytic domain of the dual-	3e-07
cd07833	288	cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dep	3e-07
cd06659	297	cd06659, STKc_PAK6, Catalytic domain of the Protei	6e-07
cd06608	275	cd06608, STKc_myosinIII_like, Catalytic domain of	6e-07
cd06621	287	cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of	7e-07
cd05578	258	cd05578, STKc_Yank1, Catalytic domain of the Prote	8e-07
cd05073	260	cd05073, PTKc_Hck, Catalytic domain of the Protein	1e-06
cd07829	282	cd07829, STKc_CDK_like, Catalytic domain of Cyclin	1e-06
cd05111	279	cd05111, PTK_HER3, Pseudokinase domain of the Prot	1e-06
cd05039	256	cd05039, PTKc_Csk_like, Catalytic domain of C-term	1e-06
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	1e-06
cd07845	309	cd07845, STKc_CDK10, Catalytic domain of the Serin	1e-06
cd06618	296	cd06618, PKc_MKK7, Catalytic domain of the dual-sp	2e-06
cd06610	267	cd06610, STKc_OSR1_SPAK, Catalytic domain of the P	2e-06
cd07864	302	cd07864, STKc_CDK12, Catalytic domain of the Serin	2e-06
cd06631	265	cd06631, STKc_YSK4, Catalytic domain of the Protei	2e-06
cd06648	285	cd06648, STKc_PAK_II, Catalytic domain of the Prot	2e-06
PHA03212	391	PHA03212, PHA03212, serine/threonine kinase US3; P	3e-06
cd05572	262	cd05572, STKc_cGK_PKG, Catalytic domain of the Pro	3e-06
cd06613	262	cd06613, STKc_MAP4K3_like, Catalytic domain of Mit	3e-06
cd07832	286	cd07832, STKc_CCRK, Catalytic domain of the Serine	3e-06
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	4e-06
cd07834	330	cd07834, STKc_MAPK, Catalytic domain of the Serine	4e-06
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	4e-06
cd06647	293	cd06647, STKc_PAK_I, Catalytic domain of the Prote	5e-06
cd08217	265	cd08217, STKc_Nek2, Catalytic domain of the Protei	6e-06
cd08219	255	cd08219, STKc_Nek3, Catalytic domain of the Protei	6e-06
cd05072	261	cd05072, PTKc_Lyn, Catalytic domain of the Protein	6e-06
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	7e-06
cd05057	279	cd05057, PTKc_EGFR_like, Catalytic domain of Epide	8e-06
cd06616	288	cd06616, PKc_MKK4, Catalytic domain of the dual-sp	8e-06
cd06641	277	cd06641, STKc_MST3, Catalytic domain of the Protei	9e-06
cd06625	263	cd06625, STKc_MEKK3_like, Catalytic domain of MAP/	1e-05
cd07852	337	cd07852, STKc_MAPK15, Catalytic domain of the Seri	1e-05
cd05109	279	cd05109, PTKc_HER2, Catalytic domain of the Protei	1e-05
cd08528	269	cd08528, STKc_Nek10, Catalytic domain of the Prote	2e-05
PLN00034	353	PLN00034, PLN00034, mitogen-activated protein kina	2e-05
cd06644	292	cd06644, STKc_STK10_LOK, Catalytic domain of the P	2e-05
cd06607	307	cd06607, STKc_TAO, Catalytic domain of the Protein	2e-05
cd07856	328	cd07856, STKc_Sty1_Hog1, Catalytic domain of the S	2e-05
cd06628	267	cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain o	3e-05
cd05056	270	cd05056, PTKc_FAK, Catalytic domain of the Protein	3e-05
cd08529	256	cd08529, STKc_FA2-like, Catalytic domain of the Pr	3e-05
cd06654	296	cd06654, STKc_PAK1, Catalytic domain of the Protei	3e-05
cd06658	292	cd06658, STKc_PAK5, Catalytic domain of the Protei	3e-05
cd06633	313	cd06633, STKc_TAO3, Catalytic domain of the Protei	4e-05
cd07866	311	cd07866, STKc_BUR1, Catalytic domain of the Serine	4e-05
cd05123	250	cd05123, STKc_AGC, Catalytic domain of AGC family	4e-05
cd06656	297	cd06656, STKc_PAK3, Catalytic domain of the Protei	4e-05
cd07855	334	cd07855, STKc_ERK5, Catalytic domain of the Serine	4e-05
cd06637	272	cd06637, STKc_TNIK, Catalytic domain of the Protei	5e-05
cd06629	272	cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain o	5e-05
cd05038	284	cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai	5e-05
cd05075	272	cd05075, PTKc_Axl, Catalytic domain of the Protein	6e-05
cd07853	372	cd07853, STKc_NLK, Catalytic domain of the Serine/	6e-05
cd07849	336	cd07849, STKc_ERK1_2_like, Catalytic domain of Ext	6e-05
cd05613	290	cd05613, STKc_MSK1_N, N-terminal catalytic domain	6e-05
cd05096	304	cd05096, PTKc_DDR1, Catalytic domain of the Protei	8e-05
cd06655	296	cd06655, STKc_PAK2, Catalytic domain of the Protei	8e-05
cd06643	282	cd06643, STKc_SLK, Catalytic domain of the Protein	8e-05
cd07847	286	cd07847, STKc_CDKL1_4, Catalytic domain of the Ser	8e-05
cd05050	288	cd05050, PTKc_Musk, Catalytic domain of the Protei	1e-04
cd05083	254	cd05083, PTKc_Chk, Catalytic domain of the Protein	1e-04
cd07863	288	cd07863, STKc_CDK4, Catalytic domain of the Serine	1e-04
cd05097	295	cd05097, PTKc_DDR_like, Catalytic domain of Discoi	1e-04
cd05074	273	cd05074, PTKc_Tyro3, Catalytic domain of the Prote	1e-04
cd08225	257	cd08225, STKc_Nek5, Catalytic domain of the Protei	1e-04
cd06611	280	cd06611, STKc_SLK_like, Catalytic domain of Ste20-	1e-04
PHA03207	392	PHA03207, PHA03207, serine/threonine kinase US3; P	1e-04
cd05059	256	cd05059, PTKc_Tec_like, Catalytic domain of Tec-li	1e-04
PHA03209	357	PHA03209, PHA03209, serine/threonine kinase US3; P	1e-04
cd05104	375	cd05104, PTKc_Kit, Catalytic domain of the Protein	2e-04
cd05049	280	cd05049, PTKc_Trk, Catalytic domain of the Protein	2e-04
cd05053	293	cd05053, PTKc_FGFR, Catalytic domain of the Protei	2e-04
cd05580	290	cd05580, STKc_PKA, Catalytic domain of the Protein	2e-04
cd05118	283	cd05118, STKc_CMGC, Catalytic domain of CMGC famil	2e-04
cd05095	296	cd05095, PTKc_DDR2, Catalytic domain of the Protei	2e-04
cd06640	277	cd06640, STKc_MST4, Catalytic domain of the Protei	2e-04
cd06642	277	cd06642, STKc_STK25-YSK1, Catalytic domain of the	2e-04
cd05603	321	cd05603, STKc_SGK2, Catalytic domain of the Protei	2e-04
cd06636	282	cd06636, STKc_MAP4K4_6, Catalytic domain of the Pr	2e-04
cd07859	338	cd07859, STKc_TDY_MAPK_plant, Catalytic domain of	2e-04
cd05602	325	cd05602, STKc_SGK1, Catalytic domain of the Protei	3e-04
cd05612	291	cd05612, STKc_PRKX_like, Catalytic domain of PRKX-	3e-04
cd06630	268	cd06630, STKc_MEKK1, Catalytic domain of the Prote	3e-04
cd06653	264	cd06653, STKc_MEKK3_like_1, Catalytic domain of MA	3e-04
cd05597	331	cd05597, STKc_DMPK_like, Catalytic domain of Myoto	3e-04
cd06624	268	cd06624, STKc_ASK, Catalytic domain of the Protein	3e-04
cd05088	303	cd05088, PTKc_Tie2, Catalytic domain of the Protei	3e-04
cd05047	270	cd05047, PTKc_Tie, Catalytic domain of Tie Protein	3e-04
cd06615	308	cd06615, PKc_MEK, Catalytic domain of the dual-spe	4e-04
cd05101	304	cd05101, PTKc_FGFR2, Catalytic domain of the Prote	4e-04
cd05108	316	cd05108, PTKc_EGFR, Catalytic domain of the Protei	4e-04
cd05089	297	cd05089, PTKc_Tie1, Catalytic domain of the Protei	4e-04
cd05099	314	cd05099, PTKc_FGFR4, Catalytic domain of the Prote	4e-04
cd05624	331	cd05624, STKc_MRCK_beta, Catalytic domain of the P	4e-04
cd05058	262	cd05058, PTKc_Met_Ron, Catalytic domain of the Pro	4e-04
cd07857	332	cd07857, STKc_MPK1, Catalytic domain of the Serine	4e-04
cd06652	265	cd06652, STKc_MEKK2, Catalytic domain of the Prote	4e-04
cd05596	370	cd05596, STKc_ROCK, Catalytic domain of the Protei	5e-04
cd06646	267	cd06646, STKc_MAP4K5, Catalytic domain of the Prot	5e-04
cd07838	287	cd07838, STKc_CDK4_6_like, Catalytic domain of Cyc	5e-04
cd05579	265	cd05579, STKc_MAST_like, Catalytic domain of Micro	5e-04
cd05604	325	cd05604, STKc_SGK3, Catalytic domain of the Protei	5e-04
cd05093	288	cd05093, PTKc_TrkB, Catalytic domain of the Protei	5e-04
cd06635	317	cd06635, STKc_TAO1, Catalytic domain of the Protei	5e-04
PTZ00024	335	PTZ00024, PTZ00024, cyclin-dependent protein kinas	6e-04
cd05098	307	cd05098, PTKc_FGFR1, Catalytic domain of the Prote	6e-04
cd05114	256	cd05114, PTKc_Tec_Rlk, Catalytic domain of the Pro	6e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-04
cd05583	288	cd05583, STKc_MSK_N, N-terminal catalytic domain o	7e-04
cd05601	330	cd05601, STKc_CRIK, Catalytic domain of the Protei	7e-04
cd05094	291	cd05094, PTKc_TrkC, Catalytic domain of the Protei	7e-04
cd06651	266	cd06651, STKc_MEKK3, Catalytic domain of the Prote	7e-04
cd07870	291	cd07870, STKc_PFTAIRE2, Catalytic domain of the Se	7e-04
cd05623	332	cd05623, STKc_MRCK_alpha, Catalytic domain of the	7e-04
cd05116	257	cd05116, PTKc_Syk, Catalytic domain of the Protein	7e-04
cd05032	277	cd05032, PTKc_InsR_like, Catalytic domain of Insul	8e-04
cd07843	293	cd07843, STKc_CDC2L1, Catalytic domain of the Seri	8e-04
cd07865	310	cd07865, STKc_CDK9, Catalytic domain of the Serine	8e-04
cd08218	256	cd08218, STKc_Nek1, Catalytic domain of the Protei	9e-04
PLN03224	507	PLN03224, PLN03224, probable serine/threonine prot	9e-04
cd08223	257	cd08223, STKc_Nek4, Catalytic domain of the Protei	9e-04
cd05575	323	cd05575, STKc_SGK, Catalytic domain of the Protein	0.001
cd05048	283	cd05048, PTKc_Ror, Catalytic Domain of the Protein	0.001
cd06657	292	cd06657, STKc_PAK4, Catalytic domain of the Protei	0.001
cd07831	282	cd07831, STKc_MOK, Catalytic domain of the Serine/	0.001
cd05060	257	cd05060, PTKc_Syk_like, Catalytic domain of Spleen	0.001
cd05100	334	cd05100, PTKc_FGFR3, Catalytic domain of the Prote	0.001
cd05113	256	cd05113, PTKc_Btk_Bmx, Catalytic domain of the Pro	0.001
cd05041	251	cd05041, PTKc_Fes_like, Catalytic domain of Fes-li	0.001
cd05110	303	cd05110, PTKc_HER4, Catalytic domain of the Protei	0.001
cd05614	332	cd05614, STKc_MSK2_N, N-terminal catalytic domain	0.001
cd07860	284	cd07860, STKc_CDK2_3, Catalytic domain of the Seri	0.002
cd05115	257	cd05115, PTKc_Zap-70, Catalytic domain of the Prot	0.002
cd07830	283	cd07830, STKc_MAK_like, Catalytic domain of Male g	0.002
cd07858	337	cd07858, STKc_TEY_MAPK_plant, Catalytic domain of	0.002
cd07839	284	cd07839, STKc_CDK5, Catalytic domain of the Serine	0.002
cd05043	280	cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Rece	0.002
cd07844	291	cd07844, STKc_PCTAIRE_like, Catalytic domain of PC	0.002
PTZ00263	329	PTZ00263, PTZ00263, protein kinase A catalytic sub	0.002
cd07842	316	cd07842, STKc_CDK8_like, Catalytic domain of Cycli	0.002
cd05112	256	cd05112, PTKc_Itk, Catalytic domain of the Protein	0.002
cd05591	321	cd05591, STKc_nPKC_epsilon, Catalytic domain of th	0.002
cd05040	257	cd05040, PTKc_Ack_like, Catalytic domain of the Pr	0.002
cd05589	324	cd05589, STKc_PKN, Catalytic domain of the Protein	0.002
cd07862	290	cd07862, STKc_CDK6, Catalytic domain of the Serine	0.003
cd05582	318	cd05582, STKc_RSK_N, N-terminal catalytic domain o	0.003
cd05045	290	cd05045, PTKc_RET, Catalytic domain of the Protein	0.003
cd07871	288	cd07871, STKc_PCTAIRE3, Catalytic domain of the Se	0.003
cd05106	374	cd05106, PTKc_CSF-1R, Catalytic domain of the Prot	0.003
cd06620	284	cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of	0.003
cd05585	312	cd05585, STKc_YPK1_like, Catalytic domain of Yeast	0.003
cd05610	669	cd05610, STKc_MASTL, Catalytic domain of the Prote	0.003
cd08220	256	cd08220, STKc_Nek8, Catalytic domain of the Protei	0.003
cd05571	323	cd05571, STKc_PKB, Catalytic domain of the Protein	0.004
cd05611	260	cd05611, STKc_Rim15_like, Catalytic domain of fung	0.004
cd05092	280	cd05092, PTKc_TrkA, Catalytic domain of the Protei	0.004
cd06634	308	cd06634, STKc_TAO2, Catalytic domain of the Protei	0.004
cd05082	256	cd05082, PTKc_Csk, Catalytic domain of the Protein	0.004
PTZ00283	496	PTZ00283, PTZ00283, serine/threonine protein kinas	0.004
cd05081	284	cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2)	0.004

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 60.7 bits (148), Expect = 9e-13
 Identities = 29/83 (34%), Positives = 38/83 (45%), Gaps = 6/83 (7%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
            E G LF  L        L+  +   I   +   L YLH      ++HRD+   NILLD 
Sbjct: 80  CEGGDLFDYLS---RGGPLSEDEAKKIALQILRGLEYLHS---NGIIHRDLKPENILLDE 133

Query: 61  NLEASVADFGTARLLHVDSSNRT 83
           N    +ADFG A+ L   SS+ T
Sbjct: 134 NGVVKIADFGLAKKLLKSSSSLT 156

Length = 260

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score = 59.2 bits (144), Expect = 2e-12
 Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 6/84 (7%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLD- 59
            E GSL  +L++++   +L+  + + I+  +   L YLH      ++HRD+   NILLD 
Sbjct: 73  CEGGSLKDLLKENE--GKLSEDEILRILLQILEGLEYLHS---NGIIHRDLKPENILLDS 127

Query: 60  LNLEASVADFGTARLLHVDSSNRT 83
            N +  +ADFG ++LL  D S   
Sbjct: 128 DNGKVKLADFGLSKLLTSDKSLLK 151

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score = 59.1 bits (144), Expect = 3e-12
 Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 7/84 (8%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLH-HDCTLSVVHRDISSNNILLD 59
           M  G L   LR   E + L     + +   +A  + YL   +     VHRD+++ N L+ 
Sbjct: 83  MPGGDLLDFLRKHGEKLTLKD--LLQMALQIAKGMEYLESKNF----VHRDLAARNCLVT 136

Query: 60  LNLEASVADFGTARLLHVDSSNRT 83
            NL   ++DFG +R ++ D   R 
Sbjct: 137 ENLVVKISDFGLSRDIYEDDYYRK 160

Length = 258

>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein Tyrosine Kinases

 Score = 58.1 bits (141), Expect = 8e-12
 Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 4/78 (5%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           M +GSL   L+   E  +L   + V +   +A  ++YL    + + +HRD+++ NIL+  
Sbjct: 83  MSKGSLLDFLKSG-EGKKLRLPQLVDMAAQIAEGMAYLE---SRNYIHRDLAARNILVGE 138

Query: 61  NLEASVADFGTARLLHVD 78
           NL   +ADFG ARL+  D
Sbjct: 139 NLVCKIADFGLARLIEDD 156

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, and Lyn show a limited expression pattern. Length = 261

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 57.9 bits (141), Expect = 8e-12
 Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 4/82 (4%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           M  G L   LR +    EL+ +  +S    +A  + YL      + +HRD+++ N L+  
Sbjct: 83  MPGGDLLDYLRKNRPK-ELSLSDLLSFALQIARGMEYLES---KNFIHRDLAARNCLVGE 138

Query: 61  NLEASVADFGTARLLHVDSSNR 82
           NL   ++DFG +R L+ D   +
Sbjct: 139 NLVVKISDFGLSRDLYDDDYYK 160

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 57.5 bits (140), Expect = 1e-11
 Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 5/82 (6%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           ME G L   LR +   +  + +  +S    +A  + YL      + +HRD+++ N L+  
Sbjct: 83  MEGGDLLSYLRKNRPKL--SLSDLLSFALQIARGMEYLES---KNFIHRDLAARNCLVGE 137

Query: 61  NLEASVADFGTARLLHVDSSNR 82
           NL   ++DFG +R L+ D   R
Sbjct: 138 NLVVKISDFGLSRDLYDDDYYR 159

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score = 56.4 bits (137), Expect = 3e-11
 Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 6/84 (7%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
            E G LF +L+     +  +  +    ++ +  AL YLH   +  +VHRD+   NILLD 
Sbjct: 79  CEGGDLFDLLKKRG-RLSEDEAR--FYLRQILSALEYLH---SKGIVHRDLKPENILLDE 132

Query: 61  NLEASVADFGTARLLHVDSSNRTL 84
           +    +ADFG AR L       T 
Sbjct: 133 DGHVKLADFGLARQLDPGEKLTTF 156

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|173638 cd05065, PTKc_EphR_B, Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

 Score = 55.6 bits (134), Expect = 6e-11
 Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 5/83 (6%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           ME G+L   LR +D   +    + V +++ +A  + YL     ++ VHRD+++ NIL++ 
Sbjct: 87  MENGALDSFLRQNDG--QFTVIQLVGMLRGIAAGMKYLSE---MNYVHRDLAARNILVNS 141

Query: 61  NLEASVADFGTARLLHVDSSNRT 83
           NL   V+DFG +R L  D+S+ T
Sbjct: 142 NLVCKVSDFGLSRFLEDDTSDPT 164

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion. EphBRs play important roles in synapse formation and plasticity, spine morphogenesis, axon guidance, and angiogenesis. In the intestinal epithelium, EphBRs are Wnt signaling target genes that control cell compartmentalization. They function as suppressors of color cancer progression. Length = 269

>gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

 Score = 55.8 bits (135), Expect = 6e-11
 Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 5/75 (6%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           ME GSL   LR++D   +    + V +++ +A  + YL        VHRD+++ NIL++ 
Sbjct: 87  MENGSLDKFLRENDG--KFTVGQLVGMLRGIASGMKYLSEMNY---VHRDLAARNILVNS 141

Query: 61  NLEASVADFGTARLL 75
           NL   V+DFG +R L
Sbjct: 142 NLVCKVSDFGLSRRL 156

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. This allows ephrin/EphR dimers to form, leading to the activation of the intracellular tyr kinase domain. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). The main effect of ephrin/EphR interaction is cell-cell repulsion or adhesion. Ephrin/EphR signaling is important in neural development and plasticity, cell morphogenesis and proliferation, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|133194 cd05063, PTKc_EphR_A2, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

 Score = 54.6 bits (131), Expect = 2e-10
 Identities = 30/78 (38%), Positives = 48/78 (61%), Gaps = 5/78 (6%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           ME G+L   LRD D   E +  + V +++ +A  + YL     ++ VHRD+++ NIL++ 
Sbjct: 88  MENGALDKYLRDHDG--EFSSYQLVGMLRGIAAGMKYLSD---MNYVHRDLAARNILVNS 142

Query: 61  NLEASVADFGTARLLHVD 78
           NLE  V+DFG +R+L  D
Sbjct: 143 NLECKVSDFGLSRVLEDD 160

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. The EphA2 receptor is overexpressed in tumor cells and tumor blood vessels in a variety of cancers including breast, prostate, lung, and colon. As a result, it is an attractive target for drug design since its inhibition could affect several aspects of tumor progression. Length = 268

>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

 Score = 54.1 bits (131), Expect = 2e-10
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 26  SIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSSNR 82
             +K +   L YLH +    ++HRDI  +NIL++ +    +ADFG AR     +S  
Sbjct: 104 CYMKQLLEGLQYLHSN---GILHRDIKGSNILINNDGVLKLADFGLARPYTKRNSAD 157

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score = 53.3 bits (129), Expect = 4e-10
 Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 9/89 (10%)

Query: 1   MERGSLFCVLR------DDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSN 54
           ME G L   LR         E   L+    +S    +A  + YL        VHRD+++ 
Sbjct: 78  MEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLAS---KKFVHRDLAAR 134

Query: 55  NILLDLNLEASVADFGTARLLHVDSSNRT 83
           N L+  +L   ++DFG +R ++ D   R 
Sbjct: 135 NCLVGEDLVVKISDFGLSRDVYDDDYYRK 163

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 52.9 bits (128), Expect = 5e-10
 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 3/49 (6%)

Query: 28  VKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH 76
            + +   L+YLH   +  +VHRDI   NIL+D +    +ADFG A+ L 
Sbjct: 107 TRQILEGLAYLH---SNGIVHRDIKGANILVDSDGVVKLADFGCAKRLG 152

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

 Score = 52.6 bits (127), Expect = 8e-10
 Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 5/83 (6%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           M+ GSL  ++  +   + +N  +   + + V   L YLH   + +V+HRDI S+NILL  
Sbjct: 97  MDGGSLTDIITQNF--VRMNEPQIAYVCREVLQGLEYLH---SQNVIHRDIKSDNILLSK 151

Query: 61  NLEASVADFGTARLLHVDSSNRT 83
           +    +ADFG A  L  + S R 
Sbjct: 152 DGSVKLADFGFAAQLTKEKSKRN 174

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286

>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

 Score = 52.2 bits (126), Expect = 1e-09
 Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 3/49 (6%)

Query: 33  HALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSSN 81
            AL YLH   +  ++HRD+   NILLD ++   + DFGTA++L  +SS 
Sbjct: 113 LALEYLH---SKGIIHRDLKPENILLDKDMHIKITDFGTAKVLDPNSSP 158

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280

>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

 Score = 52.1 bits (125), Expect = 1e-09
 Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 4/75 (5%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           ME+GSL   LR  +  + L     + +   VA  ++YL      + +HRD+++ NIL+  
Sbjct: 84  MEKGSLLAFLRSPEGQV-LPVASLIDMACQVAEGMAYLEEQ---NSIHRDLAARNILVGE 139

Query: 61  NLEASVADFGTARLL 75
           +L   VADFG ARL+
Sbjct: 140 DLVCKVADFGLARLI 154

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261

>gnl|CDD|173639 cd05066, PTKc_EphR_A, Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

 Score = 51.8 bits (124), Expect = 2e-09
 Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 11/81 (13%)

Query: 1   MERGSLFCVLRDDD---EAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNIL 57
           ME GSL   LR  D     I+L     V +++ +A  + YL     +  VHRD+++ NIL
Sbjct: 87  MENGSLDAFLRKHDGQFTVIQL-----VGMLRGIASGMKYL---SDMGYVHRDLAARNIL 138

Query: 58  LDLNLEASVADFGTARLLHVD 78
           ++ NL   V+DFG +R+L  D
Sbjct: 139 VNSNLVCKVSDFGLSRVLEDD 159

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. EphARs and ephrin-A ligands are expressed in multiple areas of the developing brain, especially in the retina and tectum. They are part of a system controlling retinotectal mapping. Length = 267

>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

 Score = 50.7 bits (122), Expect = 3e-09
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 9/77 (11%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRV--SIVKSVAHALSYLHHDCTLSVVHRDISSNNILL 58
           M+ GSL      D         + V   I + +   L YLH      ++HRDI  +N+L+
Sbjct: 81  MDGGSL-----ADLLKKVGKIPEPVLAYIARQILKGLDYLHTK--RHIIHRDIKPSNLLI 133

Query: 59  DLNLEASVADFGTARLL 75
           +   E  +ADFG +++L
Sbjct: 134 NSKGEVKIADFGISKVL 150

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 49.5 bits (119), Expect = 1e-08
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 27  IVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTA 72
           + K +   L YLH   +  ++HRDI + NILL  + E  + DFG +
Sbjct: 103 VCKELLKGLEYLH---SNGIIHRDIKAANILLTSDGEVKLIDFGLS 145

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|173640 cd05067, PTKc_Lck_Blk, Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

 Score = 49.1 bits (117), Expect = 1e-08
 Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 4/75 (5%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           ME GSL   L+   E I+L   K + +   +A  ++++      + +HRD+ + NIL+  
Sbjct: 82  MENGSLVDFLKTP-EGIKLTINKLIDMAAQIAEGMAFIER---KNYIHRDLRAANILVSE 137

Query: 61  NLEASVADFGTARLL 75
            L   +ADFG ARL+
Sbjct: 138 TLCCKIADFGLARLI 152

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lck is expressed in T-cells and natural killer (NK) cells. It plays a critical role in T-cell maturation, activation, and T-cell receptor (TCR) signaling. Lck phosphorylates ITAM (immunoreceptor tyr activation motif) sequences on several subunits of TCRs, leading to the activation of different second messenger cascades. Phosphorylated ITAMs serve as binding sites for other signaling factor such as Syk and ZAP-70, leading to their activation and propagation of downstream events. In addition, Lck regulates drug-induced apoptosis by interfering with the mitochondrial death pathway. The apototic role of Lck is independent of its primary function in T-cell signaling. Blk is expressed specifically in B-cells. It is involved in pre-BCR (B-cell receptor) signaling. Length = 260

>gnl|CDD|133201 cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

 Score = 48.8 bits (116), Expect = 2e-08
 Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 4/75 (5%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           M +GSL   L+D +    L     V +   VA  ++Y+     ++ +HRD+ S NIL+  
Sbjct: 82  MSKGSLLDFLKDGE-GRALKLPNLVDMAAQVAAGMAYIER---MNYIHRDLRSANILVGD 137

Query: 61  NLEASVADFGTARLL 75
            L   +ADFG ARL+
Sbjct: 138 GLVCKIADFGLARLI 152

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Fyn, together with Lck, plays a critical role in T-cell signal transduction by phosphorylating ITAM (immunoreceptor tyr activation motif) sequences on T-cell receptors, ultimately leading to the proliferation and differentiation of T-cells. In addition, Fyn is involved in the myelination of neurons, and is implicated in Alzheimer's and Parkinson's diseases. Yrk has been detected only in chickens. It is primarily found in neuronal and epithelial cells and in macrophages. It may play a role in inflammation and in response to injury. Length = 260

>gnl|CDD|132991 cd06917, STKc_NAK1_like, Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

 Score = 48.2 bits (115), Expect = 3e-08
 Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 27  IVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSSNRT 83
           I++ V  AL Y+H      V+HRDI + NIL+       + DFG A LL+ +SS R+
Sbjct: 106 IIREVLVALKYIHKV---GVIHRDIKAANILVTNTGNVKLCDFGVAALLNQNSSKRS 159

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of centrin, and phosphorylates substrates in a Cdc31p-dependent manner. Length = 277

>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

 Score = 48.0 bits (115), Expect = 3e-08
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 13/61 (21%)

Query: 23  KRVSIVKSVAH----------ALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTA 72
           K  SIV + A            L YLH      ++HRD+  NN+L+  +    +ADFG A
Sbjct: 93  KDKSIVLTPADIKSYMLMTLRGLEYLHS---NWILHRDLKPNNLLIASDGVLKLADFGLA 149

Query: 73  R 73
           R
Sbjct: 150 R 150

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is also a component of the general transcription factor TFIIH, which phosphorylates the C-terminal domain (CTD) of RNA polymerase II when it is bound with unphosphorylated DNA, as present in the pre-initiation complex. Following phosphorylation, the CTD dissociates from the DNA which allows transcription initiation. Length = 298

>gnl|CDD|133200 cd05069, PTKc_Yes, Catalytic domain of the Protein Tyrosine Kinase, Yes

 Score = 47.7 bits (113), Expect = 5e-08
 Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 4/75 (5%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           M +GSL   L++ D    L   + V +   +A  ++Y+     ++ +HRD+ + NIL+  
Sbjct: 82  MGKGSLLDFLKEGD-GKYLKLPQLVDMAAQIADGMAYIER---MNYIHRDLRAANILVGD 137

Query: 61  NLEASVADFGTARLL 75
           NL   +ADFG ARL+
Sbjct: 138 NLVCKIADFGLARLI 152

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. c-Yes kinase is the cellular homolog of the oncogenic protein (v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma viruses. It displays functional overlap with other Src subfamily members, particularly Src. It also shows some unique functions such as binding to occludins, transmembrane proteins that regulate extracellular interactions in tight junctions. Yes also associates with a number of proteins in different cell types that Src does not interact with, like JAK2 and gp130 in pre-adipocytes, and Pyk2 in treated pulmonary vein endothelial cells. Although the biological function of Yes remains unclear, it appears to have a role in regulating cell-cell interactions and vesicle trafficking in polarized cells. Length = 260

>gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

 Score = 47.0 bits (112), Expect = 8e-08
 Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 4/75 (5%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           M+ GSL   L+       L   + + +   VA  ++YL      + +HRD+++ N+L+  
Sbjct: 83  MKYGSLLEYLQGGAGR-ALKLPQLIDMAAQVASGMAYLE---AQNYIHRDLAARNVLVGE 138

Query: 61  NLEASVADFGTARLL 75
           N    VADFG AR++
Sbjct: 139 NNICKVADFGLARVI 153

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Frk, also known as Rak, is specifically expressed in liver, lung, kidney, intestine, mammary glands, and the islets of Langerhans. Rodent homologs were previously referred to as GTK (gastrointestinal tyr kinase), BSK (beta-cell Src-like kinase), or IYK (intestinal tyr kinase). Studies in mice reveal that Frk is not essential for viability. It plays a role in the signaling that leads to cytokine-induced beta-cell death in Type I diabetes. It also regulates beta-cell number during embryogenesis and early in life. Length = 261

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 47.0 bits (110), Expect = 9e-08
 Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 4/84 (4%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           ++ GSL  +L+       L+ ++ + I+  +  AL YLH   +  ++HRDI   NILLD 
Sbjct: 80  VDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLH---SKGIIHRDIKPENILLDR 136

Query: 61  NL-EASVADFGTARLLHVDSSNRT 83
           +     + DFG A+LL    S  +
Sbjct: 137 DGRVVKLIDFGLAKLLPDPGSTSS 160

Length = 384

>gnl|CDD|133202 cd05071, PTKc_Src, Catalytic domain of the Protein Tyrosine Kinase, Src

 Score = 47.0 bits (111), Expect = 1e-07
 Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 4/75 (5%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           M +GSL   L+ +     L   + V +   +A  ++Y+     ++ VHRD+ + NIL+  
Sbjct: 82  MSKGSLLDFLKGEMGKY-LRLPQLVDMAAQIASGMAYVER---MNYVHRDLRAANILVGE 137

Query: 61  NLEASVADFGTARLL 75
           NL   VADFG ARL+
Sbjct: 138 NLVCKVADFGLARLI 152

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Src also play a role in regulating cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Elevated levels of Src kinase activity have been reported in a variety of human cancers. Several inhibitors of Src have been developed as anti-cancer drugs. Src is also implicated in acute inflammatory responses and osteoclast function. Length = 262

>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

 Score = 46.9 bits (112), Expect = 1e-07
 Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 5/79 (6%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           M+ GSL  +L++    I      ++++  +V   L+YLH      ++HRD+  +NIL++ 
Sbjct: 81  MDGGSLDKILKEVQGRIPERILGKIAV--AVLKGLTYLHEK--HKIIHRDVKPSNILVNS 136

Query: 61  NLEASVADFGTARLLHVDS 79
             +  + DFG +  L V+S
Sbjct: 137 RGQIKLCDFGVSGQL-VNS 154

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residues. There are three MAPK subfamilies: extracellular signal-regulated kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In mammalian cells, there are seven MAPKKs (named MKK1-7) and 20 MAPKKKs. Each MAPK subfamily can be activated by at least two cognate MAPKKs and by multiple MAPKKKs. Length = 265

>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

 Score = 46.5 bits (111), Expect = 1e-07
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 27  IVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTA 72
           I+      L YLH   +   +HRDI + NILL+   +A +ADFG +
Sbjct: 104 ILYQTLKGLEYLH---SNKKIHRDIKAGNILLNEEGQAKLADFGVS 146

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256

>gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

 Score = 46.1 bits (110), Expect = 2e-07
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 27  IVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSSNR 82
           I++ V   L YLH +     +HRDI + NILL    +  +ADFG +  L    S R
Sbjct: 103 ILREVLLGLEYLHEE---GKIHRDIKAANILLSEEGDVKLADFGVSGQLTSTMSKR 155

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) signaling pathway, and plays a role in cytokinesis. SPS1 plays a role in regulating proteins required for spore wall formation. MST4 plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. STK25 may play a role in the regulation of cell migration and polarization. Length = 274

>gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

 Score = 45.6 bits (108), Expect = 3e-07
 Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 4/79 (5%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           M  G+L   LR+ +   E+N    + +   ++ A+ YL      + +HRD+++ N L+  
Sbjct: 84  MTYGNLLDYLRECNRQ-EVNAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGE 139

Query: 61  NLEASVADFGTARLLHVDS 79
           N    VADFG +RL+  D+
Sbjct: 140 NHLVKVADFGLSRLMTGDT 158

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays a role in cell proliferation and survival. In response to DNA damage or oxidative stress, Abl is transported to the nucleus where it induces apoptosis. In chronic myelogenous leukemia (CML) patients, an aberrant translocation results in the replacement of the first exon of Abl with the BCR (breakpoint cluster region) gene. The resulting BCR-Abl fusion protein is constitutively active and associates into tetramers, resulting in a hyperactive kinase sending a continuous signal. This leads to uncontrolled proliferation, morphological transformation and anti-apoptotic effects. BCR-Abl is the target of selective inhibitors, such as imatinib (Gleevec), used in the treatment of CML. Abl2, also known as ARG (Abelson-related gene), is thought to play a cooperative role with Abl in the proper development of the nervous system. The Tel-ARG fusion protein, resulting from reciprocal translocation between chromosomes 1 and 12, is associated with acute myeloid leukemia (AML). The TEL gene is a frequent fusion partner of other tyr kinase oncogenes, including Tel/Abl, Tel/PDGFRbeta, and Tel/Jak2, found in patients with leukemia and myeloproliferative disorders. Length = 263

>gnl|CDD|173729 cd06617, PKc_MKK3_6, Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

 Score = 45.5 bits (108), Expect = 3e-07
 Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 3/58 (5%)

Query: 27  IVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSSNRTL 84
           I  S+  AL YLH    LSV+HRD+  +N+L++ N +  + DFG +  L VDS  +T+
Sbjct: 108 IAVSIVKALEYLHS--KLSVIHRDVKPSNVLINRNGQVKLCDFGISGYL-VDSVAKTI 162

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs that phosphorylate and activate their downstream target, p38 MAPK, on specific threonine and tyrosine residues. MKK3/6 plays roles in the regulation of cell cycle progression, cytokine- and stress-induced apoptosis, oncogenic transformation, and adult tissue regeneration. In addition, MKK6 plays a critical role in osteoclast survival in inflammatory disease while MKK3 is associated with tumor invasion, progression, and poor patient survival in glioma. Length = 283

>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

 Score = 45.4 bits (108), Expect = 3e-07
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 5/44 (11%)

Query: 34  ALSYLH-HDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH 76
           A++Y H H+     +HRDI   NIL+  +    + DFG AR L 
Sbjct: 112 AIAYCHSHNI----IHRDIKPENILVSESGVLKLCDFGFARALR 151

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning and memory. Length = 288

>gnl|CDD|132990 cd06659, STKc_PAK6, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

 Score = 44.6 bits (105), Expect = 6e-07
 Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 3/61 (4%)

Query: 10  LRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADF 69
           L D      LN  +  ++ +SV  AL YLH   +  V+HRDI S++ILL L+    ++DF
Sbjct: 105 LTDIVSQTRLNEEQIATVCESVLQALCYLH---SQGVIHRDIKSDSILLTLDGRVKLSDF 161

Query: 70  G 70
           G
Sbjct: 162 G 162

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role in stress responses through its activation by the mitogen-activated protein kinase (MAPK) p38 and MAPK kinase 6 (MKK6) pathway. PAK6 is highly expressed in the brain. It is not required for viability, but together with PAK5, it is required for normal levels of locomotion and activity, and for learning and memory. Increased expression of PAK6 is found in primary and metastatic prostate cancer. PAK6 may play a role in the regulation of motility. Length = 297

>gnl|CDD|173725 cd06608, STKc_myosinIII_like, Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

 Score = 44.6 bits (106), Expect = 6e-07
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 5/55 (9%)

Query: 27  IVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSSN 81
           I++     L+YLH +    V+HRDI   NILL  N E  + DFG +    +DS+ 
Sbjct: 118 ILRETLRGLAYLHEN---KVIHRDIKGQNILLTKNAEVKLVDFGVSA--QLDSTL 167

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin III may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. It may also function as a cargo carrier during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. The Drosophila class III myosin, called NinaC (Neither inactivation nor afterpotential protein C), is critical in normal adaptation and termination of photoresponse. Vertebrates contain two isoforms of class III myosin, IIIA and IIIB. This subfamily also includes mammalian NIK-like embryo-specific kinase (NESK), Traf2- and Nck-interacting kinase (TNIK), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6). MAP4Ks are involved in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Length = 275

>gnl|CDD|132952 cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

 Score = 44.3 bits (105), Expect = 7e-07
 Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 3/44 (6%)

Query: 27  IVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFG 70
           I +SV   LSYLH   +  ++HRDI  +NILL    +  + DFG
Sbjct: 110 IAESVLKGLSYLH---SRKIIHRDIKPSNILLTRKGQVKLCDFG 150

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Pek1/Skh1 from Schizosaccharomyces pombe and MKK2 from Saccharomyces cerevisiae, and related proteins. Both fission yeast Pek1 and baker's yeast MKK2 are components of the cell integrity MAPK pathway. In fission yeast, Pek1 phosphorylates and activates the MAPK Pmk1/Spm1 and is regulated by the MAPKKK Mkh1. In baker's yeast, the pathway involves the MAPK Slt2, the MAPKKs MKK1 and MKK2, and the MAPKKK Bck1. The cell integrity MAPK cascade is activated by multiple stress conditions, and is essential in cell wall construction, morphogenesis, cytokinesis, and ion homeostasis. Length = 287

>gnl|CDD|173669 cd05578, STKc_Yank1, Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

 Score = 44.2 bits (105), Expect = 8e-07
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 31  VAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDS 79
           +  AL YLH   +  ++HRDI  +NILLD      + DF  A  +  D+
Sbjct: 109 IVLALEYLH---SKGIIHRDIKPDNILLDEQGHVHITDFNIATKVTPDT 154

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. Length = 258

>gnl|CDD|133204 cd05073, PTKc_Hck, Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

 Score = 44.2 bits (104), Expect = 1e-06
 Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 4/75 (5%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           M +GSL   L+ D E  +    K +     +A  ++++      + +HRD+ + NIL+  
Sbjct: 82  MAKGSLLDFLKSD-EGSKQPLPKLIDFSAQIAEGMAFIEQR---NYIHRDLRAANILVSA 137

Query: 61  NLEASVADFGTARLL 75
           +L   +ADFG AR++
Sbjct: 138 SLVCKIADFGLARVI 152

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Hck is present in myeloid and lymphoid cells that play a role in the development of cancer. It may be important in the oncogenic signaling of the protein Tel-Abl, which induces a chronic myelogenous leukemia (CML)-like disease. Hck also acts as a negative regulator of granulocyte colony-stimulating factor (G-CSF)-induced proliferation of granulocytic precursors, suggesting a possible role in the development of acute myeloid leukemia (AML). In addition, Hck is essential in regulating the degranulation of polymorphonuclear leukocytes (PMNs). Genetic polymorphisms affect the expression level of Hck, which affects PMN mediator release and influences the development of chronic obstructive pulmonary disease (COPD). Length = 260

>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

 Score = 44.0 bits (105), Expect = 1e-06
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 5/62 (8%)

Query: 16  AIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL 75
            +  N  K  SI+  +   L+Y H      ++HRD+   NIL++ +    +ADFG AR  
Sbjct: 94  PLSPNLIK--SIMYQLLRGLAYCHSHR---ILHRDLKPQNILINRDGVLKLADFGLARAF 148

Query: 76  HV 77
            +
Sbjct: 149 GI 150

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH. Length = 282

>gnl|CDD|173656 cd05111, PTK_HER3, Pseudokinase domain of the Protein Tyrosine Kinase, HER3

 Score = 43.8 bits (103), Expect = 1e-06
 Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 13/79 (16%)

Query: 4   GSLFCVLRDDDEAIE----LNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLD 59
           GSL   +R   ++++    LNW  ++      A  + YL       +VHR++++ NILL 
Sbjct: 93  GSLLDHVRQHRDSLDPQRLLNWCVQI------AKGMYYLEEHR---MVHRNLAARNILLK 143

Query: 60  LNLEASVADFGTARLLHVD 78
            +    +ADFG A LL+ D
Sbjct: 144 SDSIVQIADFGVADLLYPD 162

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER3 binds the neuregulin ligands, NRG1 and NRG2. HER3 contains an impaired tyr kinase domain and relies on its heterodimerization partners for activity following ligand binding. The HER2-HER3 heterodimer constitutes a high affinity co-receptor capable of potent mitogenic signaling. HER3 participates in a signaling pathway involved in the proliferation, survival, adhesion, and motility of tumor cells. Length = 279

>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

 Score = 43.5 bits (103), Expect = 1e-06
 Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 4/73 (5%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           M +GSL   LR    A+ +   +++     V   + YL      + VHRD+++ N+L+  
Sbjct: 82  MAKGSLVDYLRSRGRAV-ITLAQQLGFALDVCEGMEYLEEK---NFVHRDLAARNVLVSE 137

Query: 61  NLEASVADFGTAR 73
           +L A V+DFG A+
Sbjct: 138 DLVAKVSDFGLAK 150

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score = 43.9 bits (104), Expect = 1e-06
 Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 12/77 (15%)

Query: 2   ERGSLFCVL---RDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILL 58
             G+L  +L   R  DE +     +       +   L+YLH   +  +VHRDI   NI L
Sbjct: 82  SGGTLEELLEHGRILDEHV----IRV--YTLQLLEGLAYLH---SHGIVHRDIKPANIFL 132

Query: 59  DLNLEASVADFGTARLL 75
           D N    + DFG A  L
Sbjct: 133 DHNGVIKLGDFGCAVKL 149

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|173742 cd07845, STKc_CDK10, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

 Score = 43.5 bits (103), Expect = 1e-06
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 3/58 (5%)

Query: 26  SIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSSNRT 83
            ++  +   L YLH +    ++HRD+  +N+LL       +ADFG AR   + +   T
Sbjct: 112 CLMLQLLRGLQYLHENF---IIHRDLKVSNLLLTDKGCLKIADFGLARTYGLPAKPMT 166

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing increases the transcription of c-RAF and the activation of the p42/p44 MAPK pathway, which leads to antiestrogen resistance. Patients who express low levels of CDK10 relapse early on tamoxifen. Length = 309

>gnl|CDD|132949 cd06618, PKc_MKK7, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

 Score = 43.5 bits (103), Expect = 2e-06
 Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 9/60 (15%)

Query: 25  VSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTA-RLLHVDSSNRT 83
           V+IVK    AL YL       V+HRD+  +NILLD +    + DFG + RL  VDS  +T
Sbjct: 121 VAIVK----ALHYLKE--KHGVIHRDVKPSNILLDASGNVKLCDFGISGRL--VDSKAKT 172

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates its downstream target, c-Jun N-terminal kinase (JNK), on specific threonine and tyrosine residues. Although MKK7 is capable of dual phosphorylation, it prefers to phosphorylate the threonine residue of JNK. Thus, optimal activation of JNK requires both MKK4 (not included in this subfamily) and MKK7. MKK7 is primarily activated by cytokines. MKK7 is essential for liver formation during embryogenesis. It plays roles in G2/M cell cycle arrest and cell growth. In addition, it is involved in the control of programmed cell death, which is crucial in oncogenesis, cancer chemoresistance, and antagonism to TNFalpha-induced killing, through its inhibition by Gadd45beta and the subsequent suppression of the JNK cascade. Length = 296

>gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

 Score = 43.5 bits (103), Expect = 2e-06
 Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 15/78 (19%)

Query: 1   MERGSLFCVLRDD------DEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSN 54
           +  GSL  +++        DEAI        +++K V   L YLH +     +HRDI + 
Sbjct: 81  LSGGSLLDIMKSSYPRGGLDEAI------IATVLKEVLKGLEYLHSN---GQIHRDIKAG 131

Query: 55  NILLDLNLEASVADFGTA 72
           NILL  +    +ADFG +
Sbjct: 132 NILLGEDGSVKIADFGVS 149

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 and SPAK contain a conserved C-terminal (CCT) domain, which recognizes a unique motif ([RK]FX[VI]) present in their activating kinases (WNK1/WNK4) and their substrates. Length = 267

>gnl|CDD|173753 cd07864, STKc_CDK12, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

 Score = 43.2 bits (102), Expect = 2e-06
 Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 26  SIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSS 80
           S +K +   L+Y H    L   HRDI  +NILL+   +  +ADFG ARL + + S
Sbjct: 120 SFMKQLLEGLNYCHKKNFL---HRDIKCSNILLNNKGQIKLADFGLARLYNSEES 171

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely expressed in tissues. It interacts with cyclins L1 and L2, and plays roles in regulating transcription and alternative splicing. Length = 302

>gnl|CDD|132962 cd06631, STKc_YSK4, Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

 Score = 43.4 bits (102), Expect = 2e-06
 Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 3/47 (6%)

Query: 29  KSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL 75
           K +   ++YLH++C   VVHRDI  NN++L  N    + DFG AR L
Sbjct: 109 KQILDGVAYLHNNC---VVHRDIKGNNVMLMPNGIIKLIDFGCARRL 152

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Length = 265

>gnl|CDD|132979 cd06648, STKc_PAK_II, Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

 Score = 43.2 bits (102), Expect = 2e-06
 Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 13/73 (17%)

Query: 1   MERGSLFCVL---RDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNIL 57
           +E G+L  ++   R ++E I        ++  +V  ALS+LH      V+HRDI S++IL
Sbjct: 98  LEGGALTDIVTHTRMNEEQI-------ATVCLAVLKALSFLH---AQGVIHRDIKSDSIL 147

Query: 58  LDLNLEASVADFG 70
           L  +    ++DFG
Sbjct: 148 LTSDGRVKLSDFG 160

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs found in group I PAKs, such as an AID (autoinhibitory domain) and SH3 binding sites. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. While group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX, no such binding has been demonstrated for group II PAKs. Some known substrates of group II PAKs are also substrates of group I PAKs such as Raf, BAD, LIMK and GEFH1. Unique group II substrates include MARK/Par-1 and PDZ-RhoGEF. Group II PAKs play important roles in filopodia formation, neuron extension, cytoskeletal organization, and cell survival. Length = 285

>gnl|CDD|165478 PHA03212, PHA03212, serine/threonine kinase US3; Provisional

 Score = 43.1 bits (101), Expect = 3e-06
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 6/70 (8%)

Query: 3   RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNL 62
           +  L+C L        +     ++I +SV  A+ YLH +    ++HRDI + NI ++   
Sbjct: 166 KTDLYCYLAAKRN---IAICDILAIERSVLRAIQYLHEN---RIIHRDIKAENIFINHPG 219

Query: 63  EASVADFGTA 72
           +  + DFG A
Sbjct: 220 DVCLGDFGAA 229

Length = 391

>gnl|CDD|173663 cd05572, STKc_cGK_PKG, Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

 Score = 42.6 bits (101), Expect = 3e-06
 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 12/75 (16%)

Query: 4   GSLFCVLRDD---DEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           G L+ +LRD    DE     +T R   +  V  A  YLH+     +++RD+   N+LLD 
Sbjct: 78  GELWTILRDRGLFDE-----YTARF-YIACVVLAFEYLHN---RGIIYRDLKPENLLLDS 128

Query: 61  NLEASVADFGTARLL 75
           N    + DFG A+ L
Sbjct: 129 NGYVKLVDFGFAKKL 143

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowing autophosphorylation and activation of the kinase. cGKI is a soluble protein expressed in all smooth muscles, platelets, cerebellum, and kidney. It is also expressed at lower concentrations in other tissues. cGKII is a membrane-bound protein that is most abundantly expressed in the intestine. It is also present in the brain nuclei, adrenal cortex, kidney, lung, and prostate. cGKI is involved in the regulation of smooth muscle tone, smooth cell proliferation, and platelet activation. cGKII plays a role in the regulation of secretion, such as renin secretion by the kidney and aldosterone secretion by the adrenal. It also regulates bone growth and the circadian rhythm. Length = 262

>gnl|CDD|173727 cd06613, STKc_MAP4K3_like, Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

 Score = 42.7 bits (101), Expect = 3e-06
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 3/49 (6%)

Query: 35  LSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSSNRT 83
           L+YLH       +HRDI   NILL  + +  +ADFG +  L    + R 
Sbjct: 114 LAYLHE---TGKIHRDIKGANILLTEDGDVKLADFGVSAQLTATIAKRK 159

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K1, also called haematopoietic progenitor kinase 1 (HPK1), is a hematopoietic-specific STK involved in many cellular signaling cascades including MAPK, antigen receptor, apoptosis, growth factor, and cytokine signaling. It participates in the regulation of T cell receptor signaling and T cell-mediated immune responses. MAP4K2 was referred to as germinal center (GC) kinase because of its preferred location in GC B cells. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. It is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). Length = 262

>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

 Score = 42.7 bits (101), Expect = 3e-06
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 7/77 (9%)

Query: 1   MER--GSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILL 58
           ME     L  VLRD++  +     K  S ++ +   ++Y+H      ++HRD+   N+L+
Sbjct: 78  MEYMPSDLSEVLRDEERPLPEAQVK--SYMRMLLKGVAYMH---ANGIMHRDLKPANLLI 132

Query: 59  DLNLEASVADFGTARLL 75
             +    +ADFG ARL 
Sbjct: 133 SADGVLKIADFGLARLF 149

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of heart failure. Length = 286

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score = 42.4 bits (100), Expect = 4e-06
 Identities = 20/39 (51%), Positives = 23/39 (58%), Gaps = 3/39 (7%)

Query: 35  LSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTAR 73
           L YLH   T   VHRDI   NIL+D N    +ADFG A+
Sbjct: 115 LEYLHDRNT---VHRDIKGANILVDTNGVVKLADFGMAK 150

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|173737 cd07834, STKc_MAPK, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

 Score = 42.5 bits (101), Expect = 4e-06
 Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 3/40 (7%)

Query: 34  ALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTAR 73
            L YLH   + +V+HRD+  +NIL++ N +  + DFG AR
Sbjct: 115 GLKYLH---SANVIHRDLKPSNILVNSNCDLKICDFGLAR 151

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPK kinase (MAP2K or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAP3K or MKKK). Each cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. There are three main typical MAPK subfamilies: Extracellular signal-Regulated Kinase (ERK), c-Jun N-terminal Kinase (JNK), and p38. Some MAPKs are atypical in that they are not regulated by MAP2Ks. These include MAPK4, MAPK6, NLK, and ERK7. Length = 330

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 42.1 bits (100), Expect = 4e-06
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 3/42 (7%)

Query: 34  ALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL 75
           AL YLH      ++HRDI   NI L  N    + DFG +++L
Sbjct: 115 ALKYLHSR---KILHRDIKPQNIFLTSNGLVKLGDFGISKVL 153

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|132978 cd06647, STKc_PAK_I, Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

 Score = 42.2 bits (99), Expect = 5e-06
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 3/58 (5%)

Query: 26  SIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSSNRT 83
           ++ +    AL +LH +    V+HRDI S+NILL ++    + DFG    +  + S R+
Sbjct: 119 AVCRECLQALEFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRS 173

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs, also called conventional PAKs, include PAK1, PAK2, and PAK3. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). They interact with the SH3 domain containing proteins Nck, Grb2 and PIX. Binding of group I PAKs to activated GTPases leads to conformational changes that destabilize the AID, allowing autophosphorylation and full activation of the kinase domain. Known group I PAK substrates include MLCK, Bad, Raf, MEK1, LIMK, Merlin, Vimentin, Myc, Stat5a, and Aurora A, among others. Length = 293

>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

 Score = 41.9 bits (99), Expect = 6e-06
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 32  AHALSYLHH--DCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSS 80
             AL   H+  D   +V+HRD+   NI LD N    + DFG A++L  DSS
Sbjct: 115 LLALYECHNRSDPGNTVLHRDLKPANIFLDANNNVKLGDFGLAKILGHDSS 165

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exit. NIMA is involved in nuclear membrane fission. Vertebrate Nek2 is a cell cycle-regulated STK, localized in centrosomes and kinetochores, that regulates centrosome splitting at the G2/M phase. It also interacts with other mitotic kinases such as Polo-like kinase 1 and may play a role in spindle checkpoint. An increase in the expression of the human NEK2 gene is strongly associated with the progression of non-Hodgkin lymphoma. Length = 265

>gnl|CDD|173759 cd08219, STKc_Nek3, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

 Score = 41.9 bits (98), Expect = 6e-06
 Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 15/74 (20%)

Query: 2   ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLN 61
           +RG LF       E   L W  ++ +       + ++H      V+HRDI S NI L  N
Sbjct: 92  QRGKLF------PEDTILQWFVQMCL------GVQHIHEK---RVLHRDIKSKNIFLTQN 136

Query: 62  LEASVADFGTARLL 75
            +  + DFG+ARLL
Sbjct: 137 GKVKLGDFGSARLL 150

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activation of Vav2 and contributes to prolactin-mediated motility of breast cancer cells. Length = 255

>gnl|CDD|173641 cd05072, PTKc_Lyn, Catalytic domain of the Protein Tyrosine Kinase, Lyn

 Score = 41.9 bits (98), Expect = 6e-06
 Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 4/75 (5%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           M +GSL   L+ D E  ++   K +     +A  ++Y+      + +HRD+ + N+L+  
Sbjct: 83  MAKGSLLDFLKSD-EGGKVLLPKLIDFSAQIAEGMAYIERK---NYIHRDLRAANVLVSE 138

Query: 61  NLEASVADFGTARLL 75
           +L   +ADFG AR++
Sbjct: 139 SLMCKIADFGLARVI 153

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lyn is expressed in B lymphocytes and myeloid cells. It exhibits both positive and negative regulatory roles in B cell receptor (BCR) signaling. Lyn, as well as Fyn and Blk, promotes B cell activation by phosphorylating ITAMs (immunoreceptor tyr activation motifs) in CD19 and in Ig components of BCR. It negatively regulates signaling by its unique ability to phosphorylate ITIMs (immunoreceptor tyr inhibition motifs) in cell surface receptors like CD22 and CD5. Lyn also plays an important role in G-CSF receptor signaling by phosphorylating a variety of adaptor molecules. Length = 261

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 41.5 bits (98), Expect = 7e-06
 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 3/45 (6%)

Query: 28  VKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTA 72
           V  V   L+YLH      V+HRDI + NIL   +    +ADFG A
Sbjct: 105 VYQVLQGLAYLHEQ---GVIHRDIKAANILTTKDGVVKLADFGVA 146

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

 Score = 41.6 bits (98), Expect = 8e-06
 Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 17/86 (19%)

Query: 1   MERGSLFCVLRDDDEAIE----LNWTKRVSIVKSVAHALSYL--HHDCTLSVVHRDISSN 54
           M  G L   +R+  + I     LNW  ++      A  +SYL         +VHRD+++ 
Sbjct: 90  MPLGCLLDYVRNHKDNIGSQYLLNWCVQI------AKGMSYLEEKR-----LVHRDLAAR 138

Query: 55  NILLDLNLEASVADFGTARLLHVDSS 80
           N+L+       + DFG A+LL VD  
Sbjct: 139 NVLVKTPQHVKITDFGLAKLLDVDEK 164

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, resulting in the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Collectively, they can recognize a variety of ligands including EGF, TGFalpha, and neuregulins, among others. All four subfamily members can form homo- or heterodimers. HER3 contains an impaired kinase domain and depends on its heterodimerization partner for activation. EGFR subfamily members are involved in signaling pathways leading to a broad range of cellular responses including cell proliferation, differentiation, migration, growth inhibition, and apoptosis. Gain of function alterations, through their overexpression, deletions, or point mutations in their kinase domains, have been implicated in various cancers. These receptors are targets of many small molecule inhibitors and monoclonal antibodies used in cancer therapy. Length = 279

>gnl|CDD|132947 cd06616, PKc_MKK4, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

 Score = 41.6 bits (98), Expect = 8e-06
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 7/59 (11%)

Query: 25  VSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSSNRT 83
           V+ VK    AL+YL     L ++HRD+  +NILLD N    + DFG +  L VDS  +T
Sbjct: 114 VATVK----ALNYLKE--ELKIIHRDVKPSNILLDRNGNIKLCDFGISGQL-VDSIAKT 165

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates the downstream targets, c-Jun N-terminal kinase (JNK) and p38 MAPK, on specific threonine and tyrosine residues. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. Their activation is associated with the induction of cell death. Mice deficient in MKK4 die during embryogenesis and display anemia, severe liver hemorrhage, and abnormal hepatogenesis. MKK4 may also play roles in the immune system and in cardiac hypertrophy. It plays a major role in cancer as a tumor and metastasis suppressor. Under certain conditions, MKK4 is pro-oncogenic. Length = 288

>gnl|CDD|132972 cd06641, STKc_MST3, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

 Score = 41.2 bits (96), Expect = 9e-06
 Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 3/54 (5%)

Query: 19  LNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTA 72
           L+ T+  +I++ +   L YLH +     +HRDI + N+LL  + E  +ADFG A
Sbjct: 98  LDETQIATILREILKGLDYLHSE---KKIHRDIKAANVLLSEHGEVKLADFGVA 148

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and intrauterine growth retardation. Length = 277

>gnl|CDD|132956 cd06625, STKc_MEKK3_like, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 40.9 bits (96), Expect = 1e-05
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 29  KSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL 75
           + +   + YLH +    +VHRDI   NIL D      + DFG ++ L
Sbjct: 111 RQILEGVEYLHSN---MIVHRDIKGANILRDSAGNVKLGDFGASKRL 154

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 263

>gnl|CDD|173747 cd07852, STKc_MAPK15, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

 Score = 41.0 bits (97), Expect = 1e-05
 Identities = 19/42 (45%), Positives = 28/42 (66%), Gaps = 3/42 (7%)

Query: 34  ALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL 75
           AL Y+H   + +V+HRD+  +NILL+ +    +ADFG AR L
Sbjct: 119 ALKYIH---SGNVIHRDLKPSNILLNSDCRVKLADFGLARSL 157

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimuli whereas ERK8 shows low basal activity and is activated by DNA-damaging agents. ERK7 and ERK8 also have different substrate profiles. Genome analysis shows that they are orthologs with similar gene structures. ERK7 and ERK 8 may be involved in the signaling of some nuclear receptor transcription factors. ERK7 regulates hormone-dependent degradation of estrogen receptor alpha while ERK8 down-regulates the transcriptional co-activation androgen and glucocorticoid receptors. Length = 337

>gnl|CDD|133240 cd05109, PTKc_HER2, Catalytic domain of the Protein Tyrosine Kinase, HER2

 Score = 40.8 bits (95), Expect = 1e-05
 Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 13/84 (15%)

Query: 1   MERGSLFCVLRDDDEAIE----LNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNI 56
           M  G L   +R++ + I     LNW  ++      A  +SYL     + +VHRD+++ N+
Sbjct: 90  MPYGCLLDYVRENKDRIGSQDLLNWCVQI------AKGMSYLEE---VRLVHRDLAARNV 140

Query: 57  LLDLNLEASVADFGTARLLHVDSS 80
           L+       + DFG ARLL +D +
Sbjct: 141 LVKSPNHVKITDFGLARLLDIDET 164

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER2 does not bind to any known EGFR subfamily ligands, but contributes to the kinase activity of all possible heterodimers. It acts as the preferred partner with other ligand-bound EGFR proteins and functions as a signal amplifier, with the HER2-HER3 heterodimer being the most potent pair in mitogenic signaling. HER2 plays an important role in cell development, proliferation, survival and motility. Overexpression of HER2 results in its activation and downstream signaling, even in the absence of ligand. HER2 overexpression, mainly due to gene amplification, has been shown in a variety of human cancers. Its role in breast cancer is especially well-documented. HER2 is up-regulated in about 25% of breast tumors and is associated with increases in tumor aggressiveness, recurrence and mortality. HER2 is a target for monoclonal antibodies and small molecule inhibitors, which are being developed as treatments for cancer. The first humanized antibody approved for clinical use is Trastuzumab (Herceptin), which is being used in combination with other therapies to improve the survival rates of patients with HER2-overexpressing breast cancer. Length = 279

>gnl|CDD|173770 cd08528, STKc_Nek10, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

 Score = 40.6 bits (95), Expect = 2e-05
 Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 2/40 (5%)

Query: 34  ALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTAR 73
           AL YLH +    +VHRD++ NNI+L  + + ++ DFG A+
Sbjct: 125 ALRYLHKE--KRIVHRDLTPNNIMLGEDDKVTITDFGLAK 162

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24. Length = 269

>gnl|CDD|215036 PLN00034, PLN00034, mitogen-activated protein kinase kinase; Provisional

 Score = 40.6 bits (95), Expect = 2e-05
 Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 3/49 (6%)

Query: 27  IVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL 75
           + + +   ++YLH      +VHRDI  +N+L++      +ADFG +R+L
Sbjct: 173 VARQILSGIAYLHRR---HIVHRDIKPSNLLINSAKNVKIADFGVSRIL 218

Length = 353

>gnl|CDD|132975 cd06644, STKc_STK10_LOK, Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

 Score = 40.4 bits (94), Expect = 2e-05
 Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 3/46 (6%)

Query: 27  IVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTA 72
           I + +  AL YLH   ++ ++HRD+ + N+LL L+ +  +ADFG +
Sbjct: 115 ICRQMLEALQYLH---SMKIIHRDLKAGNVLLTLDGDIKLADFGVS 157

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types. Length = 292

>gnl|CDD|132938 cd06607, STKc_TAO, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

 Score = 40.2 bits (94), Expect = 2e-05
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 3/49 (6%)

Query: 26  SIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARL 74
           +I       L+YLH       +HRDI + NILL       +ADFG+A L
Sbjct: 119 AICHGALQGLAYLHSHER---IHRDIKAGNILLTEPGTVKLADFGSASL 164

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily members, named TAO1, TAO2, and TAO3. Length = 307

>gnl|CDD|143361 cd07856, STKc_Sty1_Hog1, Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

 Score = 40.2 bits (94), Expect = 2e-05
 Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 3/40 (7%)

Query: 35  LSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARL 74
           L Y+H   +  VVHRD+  +NIL++ N +  + DFG AR+
Sbjct: 121 LKYVH---SAGVVHRDLKPSNILINENCDLKICDFGLARI 157

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and UV radiation. Sty1 is regulated by the MAP2K Wis1, which is activated by the MAP3Ks Wis4 and Win1, which receive signals of the stress condition from membrane-spanning histidine kinases Mak1-3. Activated Sty1 stabilizes the Atf1 transcription factor and induces transcription of Atf1-dependent genes of the core environmetal stress response (CESR). Hog1 is the key element in the high osmolarity glycerol (HOG) pathway and is activated upon hyperosmotic stress. Activated Hog1 accumulates in the nucleus and regulates stress-induced transcription. The HOG pathway is mediated by two transmembrane osmosensors, Sln1 and Sho1. Length = 328

>gnl|CDD|173732 cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

 Score = 39.8 bits (93), Expect = 3e-05
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 3/59 (5%)

Query: 26  SIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSSNRTL 84
           + V+ +   L+YLH+     ++HRDI   NIL+D      ++DFG ++ L  +S +   
Sbjct: 110 NFVRQILKGLNYLHNR---GIIHRDIKGANILVDNKGGIKISDFGISKKLEANSLSTKT 165

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Byr2 is regulated by Ras1. It responds to pheromone signaling and controls mating through the MAPK pathway. Budding yeast Ste11 functions in MAPK cascades that regulate mating, high osmolarity glycerol, and filamentous growth responses. Length = 267

>gnl|CDD|133187 cd05056, PTKc_FAK, Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

 Score = 40.1 bits (94), Expect = 3e-05
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 6/63 (9%)

Query: 20  NWTKRVSIVK---SVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH 76
                 S++     ++ AL+YL    +   VHRDI++ N+L+       + DFG +R L 
Sbjct: 102 YSLDLASLILYSYQLSTALAYLE---SKRFVHRDIAARNVLVSSPDCVKLGDFGLSRYLE 158

Query: 77  VDS 79
            +S
Sbjct: 159 DES 161

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions and at growth factor receptors. Through diverse molecular interactions, FAK functions as a biosensor or integrator to control cell motility. It is a key regulator of cell survival, proliferation, migration and invasion, and thus plays an important role in the development and progression of cancer. Src binds to autophosphorylated FAK forming the FAK-Src dual kinase complex, which is activated in a wide variety of tumor cells and generates signals promoting growth and metastasis. FAK is being developed as a target for cancer therapy. Length = 270

>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

 Score = 39.8 bits (93), Expect = 3e-05
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 4/47 (8%)

Query: 35  LSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSSN 81
           L++LH      ++HRDI S N+ LD      + D G A+LL  D++N
Sbjct: 114 LAHLHSK---KILHRDIKSLNLFLDAYDNVKIGDLGVAKLLS-DNTN 156

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cycle progression. No cellular function has yet been ascribed to CNK4. Length = 256

>gnl|CDD|132985 cd06654, STKc_PAK1, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

 Score = 39.7 bits (92), Expect = 3e-05
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 3/58 (5%)

Query: 26  SIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSSNRT 83
           ++ +    AL +LH +    V+HRDI S+NILL ++    + DFG    +  + S R+
Sbjct: 120 AVCRECLQALEFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRS 174

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK1 is important in the regulation of many cellular processes including cytoskeletal dynamics, cell motility, growth, and proliferation. Although PAK1 has been regarded mainly as a cytosolic protein, recent reports indicate that PAK1 also exists in significant amounts in the nucleus, where it is involved in transcription modulation and in cell cycle regulatory events. PAK1 is also involved in transformation and tumorigenesis. Its overexpression, hyperactivation and increased nuclear accumulation is correlated to breast cancer invasiveness and progression. Nuclear accumulation is also linked to tamoxifen resistance in breast cancer cells. Length = 296

>gnl|CDD|132989 cd06658, STKc_PAK5, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

 Score = 39.6 bits (92), Expect = 3e-05
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 3/52 (5%)

Query: 19  LNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFG 70
           +N  +  ++  SV  ALSYLH      V+HRDI S++ILL  +    ++DFG
Sbjct: 115 MNEEQIATVCLSVLRALSYLH---NQGVIHRDIKSDSILLTSDGRIKLSDFG 163

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly expressed in the brain. It is not required for viability, but together with PAK6, it is required for normal levels of locomotion and activity, and for learning and memory. PAK5 cooperates with Inca (induced in neural crest by AP2) in the regulation of cell adhesion and cytoskeletal organization in the embryo and in neural crest cells during craniofacial development. PAK5 may also play a role in controlling the signaling of Raf-1, an effector of Ras, at the mitochondria. Length = 292

>gnl|CDD|132964 cd06633, STKc_TAO3, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

 Score = 39.6 bits (92), Expect = 4e-05
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 3/47 (6%)

Query: 26  SIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTA 72
           +I       L+YLH      ++HRDI + NILL    +  +ADFG+A
Sbjct: 125 AITHGALQGLAYLHSHN---MIHRDIKAGNILLTEPGQVKLADFGSA 168

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a component of the RAM (regulation of Ace2p activity and cellular morphogenesis) signaling pathway. TAO3 is upregulated in retinal ganglion cells after axotomy, and may play a role in apoptosis. Length = 313

>gnl|CDD|143371 cd07866, STKc_BUR1, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

 Score = 39.6 bits (93), Expect = 4e-05
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 27  IVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH 76
            +  +   ++YLH +    ++HRDI + NIL+D      +ADFG AR   
Sbjct: 120 YMLQLLEGINYLHEN---HILHRDIKAANILIDNQGILKIADFGLARPYD 166

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic screen as factors involved in general transcription. The BUR1/BUR2 complex phosphorylates the C-terminal domain of RNA polymerase II. In addition, this complex regulates histone modification by phosporylating Rad6 and mediating the association of the Paf1 complex with chromatin. Length = 311

>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases

 Score = 39.4 bits (93), Expect = 4e-05
 Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 3/40 (7%)

Query: 34  ALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTAR 73
           AL YLH   +L +++RD+   NILLD +    + DFG A+
Sbjct: 105 ALEYLH---SLGIIYRDLKPENILLDADGHIKLTDFGLAK 141

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250

>gnl|CDD|132987 cd06656, STKc_PAK3, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

 Score = 39.7 bits (92), Expect = 4e-05
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 3/58 (5%)

Query: 26  SIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSSNRT 83
           ++ +    AL +LH +    V+HRDI S+NILL ++    + DFG    +  + S R+
Sbjct: 119 AVCRECLQALDFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRS 173

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK3 is highly expressed in the brain. It is implicated in neuronal plasticity, synapse formation, dendritic spine morphogenesis, cell cycle progression, neuronal migration, and apoptosis. Inactivating mutations in the PAK3 gene cause X-linked non-syndromic mental retardation, the severity of which depends on the site of the mutation. Length = 297

>gnl|CDD|173749 cd07855, STKc_ERK5, Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

 Score = 39.6 bits (93), Expect = 4e-05
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 3/41 (7%)

Query: 35  LSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL 75
           L Y+H      V+HRD+  +N+L++ + E  + DFG AR L
Sbjct: 120 LKYIHSAN---VIHRDLKPSNLLVNEDCELRIGDFGMARGL 157

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the MAP2K MEK5, which in turn is regulated by the MAP3Ks MEKK2 and MEKK3. Activated ERK5 phosphorylates its targets including myocyte enhancer factor 2 (MEF2), Sap1a, c-Myc, and RSK. It plays a role in EGF-induced cell proliferation during the G1/S phase transition. Studies on knockout mice revealed that ERK5 is essential for cardiovascular development and plays an important role in angiogenesis. It is also critical for neural differentiation and survival. The ERK5 pathway has been implicated in the pathogenesis of many diseases including cancer, cardiac hypertrophy, and atherosclerosis. Length = 334

>gnl|CDD|132968 cd06637, STKc_TNIK, Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

 Score = 39.3 bits (91), Expect = 5e-05
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 27  IVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL 75
           I + +   LS+LH      V+HRDI   N+LL  N E  + DFG +  L
Sbjct: 116 ICREILRGLSHLHQH---KVIHRDIKGQNVLLTENAEVKLVDFGVSAQL 161

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activates the c-Jun N-terminal kinase (JNK) pathway and plays a role in regulating the actin cytoskeleton. Length = 272

>gnl|CDD|132960 cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

 Score = 39.4 bits (92), Expect = 5e-05
 Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 3/48 (6%)

Query: 26  SIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTAR 73
              + V   L+YLH      ++HRD+ ++N+L+D +    ++DFG ++
Sbjct: 112 FFTEQVLEGLAYLHSK---GILHRDLKADNLLVDADGICKISDFGISK 156

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell integrity MAPK pathway, which is activated by stresses and aggressions to the cell wall. The MAPKKK Bck1, MAPKKs Mkk1 and Mkk2, and the MAPK Slt2 make up the cascade that is important in the maintenance of cell wall homeostasis. Fission yeast Mkh1 is involved in MAPK cascades regulating cell morphology, cell wall integrity, salt resistance, and filamentous growth in response to stress. Length = 272

>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 39.3 bits (92), Expect = 5e-05
 Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 8/82 (9%)

Query: 1   ME---RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNIL 57
           ME    GSL   L+   +  ++N  + +     +   + YL    +   +HRD+++ NIL
Sbjct: 87  MEYLPSGSLRDYLQRHRD--QINLKRLLLFSSQICKGMDYLG---SQRYIHRDLAARNIL 141

Query: 58  LDLNLEASVADFGTARLLHVDS 79
           ++      ++DFG A++L  D 
Sbjct: 142 VESEDLVKISDFGLAKVLPEDK 163

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284

>gnl|CDD|173642 cd05075, PTKc_Axl, Catalytic domain of the Protein Tyrosine Kinase, Axl

 Score = 39.2 bits (91), Expect = 6e-05
 Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 1   MERGSLFCVL---RDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNIL 57
           M+ G L   L   R  D    L     V  +  +A  + YL    + S +HRD+++ N +
Sbjct: 88  MKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIASGMEYL---SSKSFIHRDLAARNCM 144

Query: 58  LDLNLEASVADFGTARLLH 76
           L+ N+   VADFG ++ ++
Sbjct: 145 LNENMNVCVADFGLSKKIY 163

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transformed cells. Axl signaling is important in many cellular functions such as survival, anti-apoptosis, proliferation, migration, and adhesion. Axl was originally isolated from patients with chronic myelogenous leukemia and a chronic myeloproliferative disorder. Axl is overexpressed in many human cancers including colon, squamous cell, thyroid, breast, and lung carcinomas. Length = 272

>gnl|CDD|173748 cd07853, STKc_NLK, Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

 Score = 39.0 bits (91), Expect = 6e-05
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 35  LSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSS 80
           L YLH   +  ++HRDI   N+L++ N    + DFG AR+   D S
Sbjct: 116 LKYLH---SAGILHRDIKPGNLLVNSNCVLKICDFGLARVEEPDES 158

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription factors from the TCF/LEF family, inhibiting their ability to activate the transcription of target genes. In prostate cancer cells, NLK is involved in regulating androgen receptor-mediated transcription and its expression is altered during cancer progression. Length = 372

>gnl|CDD|143354 cd07849, STKc_ERK1_2_like, Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

 Score = 38.8 bits (91), Expect = 6e-05
 Identities = 16/41 (39%), Positives = 27/41 (65%), Gaps = 3/41 (7%)

Query: 34  ALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARL 74
            L Y+H   + +V+HRD+  +N+LL+ N +  + DFG AR+
Sbjct: 118 GLKYIH---SANVLHRDLKPSNLLLNTNCDLKICDFGLARI 155

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase kinase from the Raf family. ERK1/2 have numerous substrates, many of which are nuclear and participate in transcriptional regulation of many cellular processes. They regulate cell growth, cell proliferation, and cell cycle progression from G1 to S phase. Although the distinct roles of ERK1 and ERK2 have not been fully determined, it is known that ERK2 can maintain most functions in the absence of ERK1, and that the deletion of ERK2 is embryonically lethal. The MAPK, Fus3, regulates yeast mating processes including mating-specific gene expression, G1 arrest, mating projection, and cell fusion. Length = 336

>gnl|CDD|173704 cd05613, STKc_MSK1_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

 Score = 38.8 bits (90), Expect = 6e-05
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 34  ALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSSNR 82
           AL +LH    L +++RDI   NILLD N    + DFG ++  H D   R
Sbjct: 117 ALEHLH---KLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFHEDEVER 162

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSK1 plays a role in the regulation of translational control and transcriptional activation. It phosphorylates the transcription factors, CREB and NFkappaB. It also phosphorylates the nucleosomal proteins H3 and HMG-14. Increased phosphorylation of MEK1 is associated with the development of cerebral ischemic/hypoxic preconditioning. Length = 290

>gnl|CDD|133227 cd05096, PTKc_DDR1, Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

 Score = 38.8 bits (90), Expect = 8e-05
 Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 3/52 (5%)

Query: 25  VSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH 76
           + +   +A  + YL    +L+ VHRD+++ N L+  NL   +ADFG +R L+
Sbjct: 141 LHVALQIASGMKYL---SSLNFVHRDLATRNCLVGENLTIKIADFGMSRNLY 189

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in keratinocytes, colonic mucosa epithelium, lung epithelium, thyroid follicles, and the islets of Langerhans. During embryonic development, it is found in the developing neuroectoderm. DDR1 is a key regulator of cell morphogenesis, differentiation and proliferation. It is important in the development of the mammary gland, the vasculator and the kidney. DDR1 is also found in human leukocytes, where it facilitates cell adhesion, migration, maturation, and cytokine production. Length = 304

>gnl|CDD|132986 cd06655, STKc_PAK2, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

 Score = 38.6 bits (89), Expect = 8e-05
 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 3/58 (5%)

Query: 26  SIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSSNRT 83
           ++ +    AL +LH +    V+HRDI S+N+LL ++    + DFG    +  + S R+
Sbjct: 119 AVCRECLQALEFLHAN---QVIHRDIKSDNVLLGMDGSVKLTDFGFCAQITPEQSKRS 173

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK2 plays a role in pro-apoptotic signaling. It is cleaved and activated by caspases leading to morphological changes during apoptosis. PAK2 is also activated in response to a variety of stresses including DNA damage, hyperosmolarity, serum starvation, and contact inhibition, and may play a role in coordinating the stress response. PAK2 also contributes to cancer cell invasion through a mechanism distinct from that of PAK1. Length = 296

>gnl|CDD|132974 cd06643, STKc_SLK, Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

 Score = 38.5 bits (89), Expect = 8e-05
 Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 3/46 (6%)

Query: 27  IVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTA 72
           + K    AL+YLH +    ++HRD+ + NIL  L+ +  +ADFG +
Sbjct: 108 VCKQTLEALNYLHEN---KIIHRDLKAGNILFTLDGDIKLADFGVS 150

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration. Length = 282

>gnl|CDD|173744 cd07847, STKc_CDKL1_4, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

 Score = 38.5 bits (90), Expect = 8e-05
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 5/51 (9%)

Query: 26  SIVKSVAHALSYLH-HDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL 75
            I+     A+++ H H+C    +HRD+   NIL+    +  + DFG AR+L
Sbjct: 104 KIIWQTLQAVNFCHKHNC----IHRDVKPENILITKQGQIKLCDFGFARIL 150

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The function of CDKL4 is unknown. Length = 286

>gnl|CDD|133181 cd05050, PTKc_Musk, Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

 Score = 38.3 bits (89), Expect = 1e-04
 Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 3/55 (5%)

Query: 19  LNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTAR 73
           L+ T+++ I K VA  ++YL        VHRD+++ N L+  N+   +ADFG +R
Sbjct: 127 LSCTEQLCIAKQVAAGMAYLSER---KFVHRDLATRNCLVGENMVVKIADFGLSR 178

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates Musk autophosphorylation and activation, leading to the clustering of acetylcholine receptors (AChRs). To date, there is no evidence to suggest that agrin binds directly to Musk. Mutations in AChR, Musk and other partners are responsible for diseases of the NMJ, such as the autoimmune syndrome myasthenia gravis. Length = 288

>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

 Score = 38.4 bits (89), Expect = 1e-04
 Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 6/82 (7%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           M +G+L   LR    A+ ++  + +     VA  + YL    +  +VHRD+++ NIL+  
Sbjct: 80  MSKGNLVNFLRTRGRAL-VSVIQLLQFSLDVAEGMEYLE---SKKLVHRDLAARNILVSE 135

Query: 61  NLEASVADFGTARL--LHVDSS 80
           +  A V+DFG AR+  + VD+S
Sbjct: 136 DGVAKVSDFGLARVGSMGVDNS 157

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As a negative regulator of Src kinases, Chk may play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Chk is expressed in brain and hematopoietic cells. Studies in mice reveal that Chk is not functionally redundant with Csk and that it plays an important role as a regulator of immune responses. Chk also plays a role in neural differentiation in a manner independent of Src by enhancing Mapk activation via Ras-mediated signaling. Length = 254

>gnl|CDD|143368 cd07863, STKc_CDK4, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

 Score = 38.4 bits (89), Expect = 1e-04
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 3/48 (6%)

Query: 27  IVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARL 74
           +++     L +LH +C   +VHRD+   NIL+    +  +ADFG AR+
Sbjct: 113 LMRQFLRGLDFLHANC---IVHRDLKPENILVTSGGQVKLADFGLARI 157

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the nucleus. CDK4 also shows kinase activity towards Smad3, a signal transducer of transforming growth factor (TGF)-beta signaling which modulates transcription and plays a role in cell proliferation and apoptosis. CDK4 is inhibited by the p21 inhibitor and is specifically mutated in human melanoma. Length = 288

>gnl|CDD|133228 cd05097, PTKc_DDR_like, Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

 Score = 38.4 bits (89), Expect = 1e-04
 Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 3/46 (6%)

Query: 31  VAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH 76
           +A  + YL    +L+ VHRD+++ N L+  +    +ADFG +R L+
Sbjct: 138 IASGMKYL---ASLNFVHRDLATRNCLVGNHYTIKIADFGMSRNLY 180

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 295

>gnl|CDD|133205 cd05074, PTKc_Tyro3, Catalytic domain of the Protein Tyrosine Kinase, Tyro3

 Score = 38.4 bits (89), Expect = 1e-04
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 6/76 (7%)

Query: 1   MERGSLFCVL---RDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNIL 57
           M+ G L   L   R  +E   L     V  +  +A  + YL      + +HRD+++ N +
Sbjct: 89  MKHGDLHTFLLMSRIGEEPFTLPLQTLVRFMIDIASGMEYLSSK---NFIHRDLAARNCM 145

Query: 58  LDLNLEASVADFGTAR 73
           L+ N+   VADFG ++
Sbjct: 146 LNENMTVCVADFGLSK 161

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic factor. It is also expressed in osteoclasts and has a role in bone resorption. Length = 273

>gnl|CDD|173765 cd08225, STKc_Nek5, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

 Score = 38.0 bits (88), Expect = 1e-04
 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 16/77 (20%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
            +RG LF     +D+   L+W  ++S+       L ++H      ++HRDI S NI L  
Sbjct: 92  RQRGVLF----SEDQI--LSWFVQISL------GLKHIHDR---KILHRDIKSQNIFLSK 136

Query: 61  N-LEASVADFGTARLLH 76
           N + A + DFG AR L+
Sbjct: 137 NGMVAKLGDFGIARQLN 153

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown. Length = 257

>gnl|CDD|132942 cd06611, STKc_SLK_like, Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

 Score = 38.2 bits (89), Expect = 1e-04
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 4/58 (6%)

Query: 27  IVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFG-TARLLHVDSSNRT 83
           + + +  AL++LH      V+HRD+ + NILL L+ +  +ADFG +A+         T
Sbjct: 108 VCRQMLEALNFLHSH---KVIHRDLKAGNILLTLDGDVKLADFGVSAKNKSTLQKRDT 162

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. SmSLK is capable of activating the MAPK Jun N-terminal kinase (JNK) pathway in human embryonic kidney (HEK) cells as well as in Xenopus oocytes. It may participate in regulating MAPK cascades during host-parasite interactions. Length = 280

>gnl|CDD|165473 PHA03207, PHA03207, serine/threonine kinase US3; Provisional

 Score = 37.9 bits (88), Expect = 1e-04
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 3/48 (6%)

Query: 25  VSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTA 72
           ++I + +  AL+YLH      ++HRD+ + NI LD    A + DFG A
Sbjct: 188 ITIQRRLLEALAYLHGR---GIIHRDVKTENIFLDEPENAVLGDFGAA 232

Length = 392

>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein Tyrosine Kinases

 Score = 37.8 bits (88), Expect = 1e-04
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 5/73 (6%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           M  G L   LR+    +   W   + +   V  A+ YL  +     +HRD+++ N L+  
Sbjct: 81  MANGCLLNYLRERKGKLGTEWL--LDMCSDVCEAMEYLESNG---FIHRDLAARNCLVGE 135

Query: 61  NLEASVADFGTAR 73
           +    V+DFG AR
Sbjct: 136 DNVVKVSDFGLAR 148

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases form the second largest subfamily of nRTKs and are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. Mutations in Btk cause the severe B-cell immunodeficiency, X-linked agammaglobulinaemia (XLA). Length = 256

>gnl|CDD|177557 PHA03209, PHA03209, serine/threonine kinase US3; Provisional

 Score = 37.9 bits (88), Expect = 1e-04
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 27  IVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTAR 73
           I K +   L YLH      ++HRD+ + NI ++   +  + D G A+
Sbjct: 162 IEKQILEGLRYLH---AQRIIHRDVKTENIFINDVDQVCIGDLGAAQ 205

Length = 357

>gnl|CDD|133235 cd05104, PTKc_Kit, Catalytic domain of the Protein Tyrosine Kinase, Kit

 Score = 38.0 bits (88), Expect = 2e-04
 Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 3/68 (4%)

Query: 13  DDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTA 72
           +++ + L+    +S    VA  +S+L    + + +HRD+++ NILL       + DFG A
Sbjct: 205 EEDELALDTEDLLSFSYQVAKGMSFL---ASKNCIHRDLAARNILLTHGRITKICDFGLA 261

Query: 73  RLLHVDSS 80
           R +  DS+
Sbjct: 262 RDIRNDSN 269

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem cells, the interstitial cells of Cajal, and the pacemaker cells of the GI tract. Kit signaling is involved in major cellular functions including cell survival, proliferation, differentiation, adhesion, and chemotaxis. Mutations in Kit, which result in constitutive ligand-independent activation, are found in human cancers such as gastrointestinal stromal tumor (GIST) and testicular germ cell tumor (TGCT). The aberrant expression of Kit and/or SCF is associated with other tumor types such as systemic mastocytosis and cancers of the breast, neurons, lung, prostate, colon, and rectum. Although the structure of the human Kit catalytic domain is known, it is excluded from this specific alignment model because it contains a deletion in its sequence. Length = 375

>gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

 Score = 37.8 bits (88), Expect = 2e-04
 Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 14/84 (16%)

Query: 1   MERGSLFCVLR-----------DDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHR 49
           ME G L   LR            D    EL  ++ + I   +A  + YL    +   VHR
Sbjct: 90  MEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVYL---ASQHFVHR 146

Query: 50  DISSNNILLDLNLEASVADFGTAR 73
           D+++ N L+  +L   + DFG +R
Sbjct: 147 DLATRNCLVGYDLVVKIGDFGMSR 170

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalytic domain. Trk receptors are mainly expressed in the peripheral and central nervous systems. They play important roles in cell fate determination, neuronal survival and differentiation, as well as in the regulation of synaptic plasticity. Altered expression of Trk receptors is associated with many human diseases. Length = 280

>gnl|CDD|173634 cd05053, PTKc_FGFR, Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

 Score = 37.8 bits (88), Expect = 2e-04
 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 5/67 (7%)

Query: 12  DDDEAIELNWTKR--VSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADF 69
           DD    E   T++  VS    VA  + +L    +   +HRD+++ N+L+  +    +ADF
Sbjct: 120 DDPRPPEETLTQKDLVSFAYQVARGMEFL---ASKKCIHRDLAARNVLVTEDHVMKIADF 176

Query: 70  GTARLLH 76
           G AR +H
Sbjct: 177 GLARDIH 183

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation, and intracellular signaling. There are at least 23 FGFs and four types of FGFRs. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. FGF/FGFR signaling is important in the regulation of embryonic development, homeostasis, and regenerative processes. Depending on the cell type and stage, FGFR signaling produces diverse cellular responses including proliferation, growth arrest, differentiation, and apoptosis. Aberrant signaling leads to many human diseases such as skeletal, olfactory, and metabolic disorders, as well as cancer. Length = 293

>gnl|CDD|173671 cd05580, STKc_PKA, Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

 Score = 37.5 bits (88), Expect = 2e-04
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 3/45 (6%)

Query: 31  VAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL 75
           V  AL YLH    L +V+RD+   N+LLD +    + DFG A+ +
Sbjct: 110 VVLALEYLHS---LDIVYRDLKPENLLLDSDGYIKITDFGFAKRV 151

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubiquitously in cells and interacts with many different downstream targets. It plays a role in the regulation of diverse processes such as growth, development, memory, metabolism, gene expression, immunity, and lipolysis. Length = 290

>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family Serine/Threonine Kinases

 Score = 37.7 bits (88), Expect = 2e-04
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 5/47 (10%)

Query: 34  ALSYLH-HDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDS 79
            L++ H H      +HRD+   N+L++      +ADFG AR      
Sbjct: 110 GLAFCHSHGI----LHRDLKPENLLINTEGVLKLADFGLARSFGSPV 152

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Length = 283

>gnl|CDD|173651 cd05095, PTKc_DDR2, Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

 Score = 37.6 bits (87), Expect = 2e-04
 Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 3/64 (4%)

Query: 13  DDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTA 72
             + + ++++  + +   +A  + YL    +L+ VHRD+++ N L+  N    +ADFG +
Sbjct: 121 KADVVTISYSTLIFMATQIASGMKYLS---SLNFVHRDLATRNCLVGKNYTIKIADFGMS 177

Query: 73  RLLH 76
           R L+
Sbjct: 178 RNLY 181

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues with the highest levels found in skeletal muscle, skin, kidney and lung. It is important in cell proliferation and development. Mice, with a deletion of DDR2, suffer from dwarfism and delayed healing of epidermal wounds. DDR2 also contributes to collagen (type I) regulation by inhibiting fibrillogenesis and altering the morphology of collagen fibers. It is also expressed in immature dendritic cells (DCs), where it plays a role in DC activation and function. Length = 296

>gnl|CDD|132971 cd06640, STKc_MST4, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

 Score = 37.3 bits (86), Expect = 2e-04
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 3/47 (6%)

Query: 26  SIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTA 72
           +++K +   L YLH +     +HRDI + N+LL    +  +ADFG A
Sbjct: 105 TMLKEILKGLDYLHSE---KKIHRDIKAANVLLSEQGDVKLADFGVA 148

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by interacting with the Golgi matrix protein GM130 and may play a role in cell migration. Length = 277

>gnl|CDD|132973 cd06642, STKc_STK25-YSK1, Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

 Score = 37.3 bits (86), Expect = 2e-04
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 3/47 (6%)

Query: 26  SIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTA 72
           +I++ +   L YLH +     +HRDI + N+LL    +  +ADFG A
Sbjct: 105 TILREILKGLDYLHSE---RKIHRDIKAANVLLSEQGDVKLADFGVA 148

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25 is a candidate gene responsible for pseudopseudohypoparathyroidism (PPHP), a disease that shares features with the Albright hereditary osteodystrophy (AHO) phenotype. Length = 277

>gnl|CDD|173694 cd05603, STKc_SGK2, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

 Score = 37.3 bits (86), Expect = 2e-04
 Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 3/40 (7%)

Query: 31  VAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFG 70
           VA A+ YLH   +L++++RD+   NILLD      + DFG
Sbjct: 105 VASAIGYLH---SLNIIYRDLKPENILLDSQGHVVLTDFG 141

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1. Length = 321

>gnl|CDD|132967 cd06636, STKc_MAP4K4_6, Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

 Score = 37.3 bits (86), Expect = 2e-04
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 27  IVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL 75
           I + +   L++LH      V+HRDI   N+LL  N E  + DFG +  L
Sbjct: 126 ICREILRGLAHLH---AHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQL 171

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K4 is also called Nck Interacting kinase (NIK). It facilitates the activation of the MAPKs, extracellular signal-regulated kinase (ERK) 1, ERK2, and c-Jun N-terminal kinase (JNK), by phosphorylating and activating MEKK1. MAP4K4 plays a role in tumor necrosis factor (TNF) alpha-induced insulin resistance. MAP4K4 silencing in skeletal muscle cells from type II diabetic patients restores insulin-mediated glucose uptake. MAP4K4, through JNK, also plays a broad role in cell motility, which impacts inflammation, homeostasis, as well as the invasion and spread of cancer. MAP4K4 is found to be highly expressed in most tumor cell lines relative to normal tissue. MAP4K6 (also called MINK for Misshapen/NIKs-related kinase) is activated after Ras induction and mediates activation of p38 MAPK. MAP4K6 plays a role in cell cycle arrest, cytoskeleton organization, cell adhesion, and cell motility. Length = 282

>gnl|CDD|143364 cd07859, STKc_TDY_MAPK_plant, Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

 Score = 37.5 bits (87), Expect = 2e-04
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 3/46 (6%)

Query: 34  ALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDS 79
           AL Y+H   T +V HRD+   NIL + + +  + DFG AR+   D+
Sbjct: 115 ALKYIH---TANVFHRDLKPKNILANADCKLKICDFGLARVAFNDT 157

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activation loop, TEY and TDY. Arabidopsis thaliana contains more TEY-type MAPKs than TDY-type, whereas the reverse is true for Oryza sativa. This subfamily represents the TDY subtype and is composed of Group D plant MAPKs including Arabidopsis thaliana MPK18 (AtMPK18), Oryza sativa Blast- and Wound-induced MAPK1 (OsBWMK1), OsWJUMK1 (Wound- and JA-Uninducible MAPK1), Zea mays MPK6, and the Medicago sativa TDY1 gene product. OsBWMK1 enhances resistance to pathogenic infections. It mediates stress-activated defense responses by activating a transcription factor that affects the expression of stress-related genes. AtMPK18 is involved in microtubule-related functions. Length = 338

>gnl|CDD|173693 cd05602, STKc_SGK1, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

 Score = 37.3 bits (86), Expect = 3e-04
 Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)

Query: 31  VAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTAR 73
           +A AL YLH   +L++V+RD+   NILLD      + DFG  +
Sbjct: 105 IASALGYLH---SLNIVYRDLKPENILLDSQGHIVLTDFGLCK 144

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt sensitivity, memory consolidation, and cardiac repolarization. A common SGK1 variant is associated with increased blood pressure and body weight. SGK1 may also contribute to tumor growth, neurodegeneration, fibrosing disease, and ischemia. Length = 325

>gnl|CDD|173703 cd05612, STKc_PRKX_like, Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

 Score = 37.0 bits (86), Expect = 3e-04
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 3/43 (6%)

Query: 34  ALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH 76
           AL YLH   +  +V+RD+   NILLD      + DFG A+ L 
Sbjct: 113 ALEYLH---SKEIVYRDLKPENILLDKEGHIKLTDFGFAKKLR 152

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyte/macrophage lineage differentiation, renal cell epithelial migration, and tubular morphogenesis in the developing kidney. Length = 291

>gnl|CDD|132961 cd06630, STKc_MEKK1, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

 Score = 37.1 bits (86), Expect = 3e-04
 Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 10/59 (16%)

Query: 15  EAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLD-LNLEASVADFGTA 72
           EA+ +N+T+++         LSYLH +    ++HRD+   N+L+D       +ADFG A
Sbjct: 102 EAVIINYTEQL------LRGLSYLHEN---QIIHRDVKGANLLIDSTGQRLRIADFGAA 151

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively. MEKK1 is important in regulating cell survival and apoptosis. MEKK1 also plays a role in cell migration, tissue maintenance and homeostasis, and wound healing. Length = 268

>gnl|CDD|132984 cd06653, STKc_MEKK3_like_1, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 36.9 bits (85), Expect = 3e-04
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 5/58 (8%)

Query: 16  AIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTAR 73
           A+  N T+R +  + +   +SYLH +    +VHRDI   NIL D      + DFG ++
Sbjct: 102 ALTENVTRRYT--RQILQGVSYLHSNM---IVHRDIKGANILRDSAGNVKLGDFGASK 154

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 264

>gnl|CDD|173688 cd05597, STKc_DMPK_like, Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

 Score = 37.1 bits (86), Expect = 3e-04
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 34  ALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSSNRTL 84
           A+  +H    L  VHRDI  +N+LLD N    +ADFG+   L  D + ++ 
Sbjct: 114 AIDSVHQ---LGYVHRDIKPDNVLLDKNGHIRLADFGSCLRLLADGTVQSN 161

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy, and cardiac conduction defects. The genetic basis for DM1 is the mutational expansion of a CTG repeat in the 3'-UTR of DMPK. DMPK is expressed in skeletal and cardiac muscles, and in central nervous tissues. The functional role of DMPK is not fully understood. It may play a role in the signal transduction and homeostasis of calcium. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKgamma is expressed in heart and skeletal muscles, unlike MRCKalpha and MRCKbeta, which are expressed ubiquitously. Length = 331

>gnl|CDD|173730 cd06624, STKc_ASK, Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

 Score = 37.1 bits (86), Expect = 3e-04
 Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 11/81 (13%)

Query: 1   MER---GSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNIL 57
           ME+   GSL  +LR     ++ N    +   K +   L YLH      +VHRDI  +N+L
Sbjct: 84  MEQVPGGSLSALLRSKWGPLKDNEQTIIFYTKQILEGLKYLHD---NQIVHRDIKGDNVL 140

Query: 58  LDLNLEASV---ADFGTARLL 75
             +N  + V   +DFGT++ L
Sbjct: 141 --VNTYSGVVKISDFGTSKRL 159

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. It plays important roles in cytokine and stress responses, as well as in reactive oxygen species (ROS)-mediated cellular responses. ASK1 is implicated in various diseases mediated by oxidative stress including inschemic heart disease, hypertension, vessel injury, brain ischemia, Fanconi anemia, asthma, and pulmonary edema, among others. ASK2 (also called MAPKKK6) functions only in a heteromeric complex with ASK1, and can activate ASK1 by direct phosphorylation. The function of MAPKKK15 is still unknown. Length = 268

>gnl|CDD|133219 cd05088, PTKc_Tie2, Catalytic domain of the Protein Tyrosine Kinase, Tie2

 Score = 36.9 bits (85), Expect = 3e-04
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 3/43 (6%)

Query: 31  VAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTAR 73
           VA  + YL        +HRD+++ NIL+  N  A +ADFG +R
Sbjct: 133 VARGMDYLSQK---QFIHRDLAARNILVGENYVAKIADFGLSR 172

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. Tie2 signaling plays key regulatory roles in vascular integrity and quiescence, and in inflammation. Length = 303

>gnl|CDD|88330 cd05047, PTKc_Tie, Catalytic domain of Tie Protein Tyrosine Kinases

 Score = 37.0 bits (85), Expect = 3e-04
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 11  RDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFG 70
             +  A  L+  + +     VA  + YL        +HRD+++ NIL+  N  A +ADFG
Sbjct: 101 IANSTASTLSSQQLLHFAADVARGMDYLSQK---QFIHRDLAARNILVGENYVAKIADFG 157

Query: 71  TAR 73
            +R
Sbjct: 158 LSR 160

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific ligand has been identified for Tie1. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. In vivo studies of Tie1 show that it is critical in vascular development. Length = 270

>gnl|CDD|132946 cd06615, PKc_MEK, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

 Score = 36.6 bits (85), Expect = 4e-04
 Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 6/79 (7%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           M+ GSL  VL+      E N   ++SI  +V   L+YL       ++HRD+  +NIL++ 
Sbjct: 81  MDGGSLDQVLKKAGRIPE-NILGKISI--AVLRGLTYLREK--HKIMHRDVKPSNILVNS 135

Query: 61  NLEASVADFGTARLLHVDS 79
             E  + DFG +  L  DS
Sbjct: 136 RGEIKLCDFGVSGQLI-DS 153

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the downstream targets, ERK(extracellular signal-regulated kinase) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1/2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. This cascade has also been implicated in synaptic plasticity, migration, morphological determination, and stress response immunological reactions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1/2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 308

>gnl|CDD|133232 cd05101, PTKc_FGFR2, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

 Score = 36.9 bits (85), Expect = 4e-04
 Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 6/78 (7%)

Query: 7   FCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASV 66
           + + R  DE  ++ +   VS    VA  + YL    +   +HRD+++ N+L+  N    +
Sbjct: 124 YDIARVPDE--QMTFKDLVSCTYQVARGMEYL---ASQKCIHRDLAARNVLVTENNVMKI 178

Query: 67  ADFGTARLLH-VDSSNRT 83
           ADFG AR ++ +D   +T
Sbjct: 179 ADFGLARDVNNIDYYKKT 196

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. There are many splice variants of FGFR2 which show differential expression and binding to FGF ligands. Disruption of either FGFR2 or FGFR2b is lethal in mice, due to defects in the placenta or severe impairment of tissue development including lung, limb, and thyroid, respectively. Disruption of FGFR2c in mice results in defective bone and skull development. Genetic alterations of FGFR2 are associated with many human skeletal disorders including Apert syndrome, Crouzon syndrome, Jackson-Weiss syndrome, and Pfeiffer syndrome. Length = 304

>gnl|CDD|173654 cd05108, PTKc_EGFR, Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

 Score = 36.9 bits (85), Expect = 4e-04
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 13/82 (15%)

Query: 1   MERGSLFCVLRDDDEAIE----LNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNI 56
           M  G L   +R+  + I     LNW  ++      A  ++YL       +VHRD+++ N+
Sbjct: 90  MPFGCLLDYVREHKDNIGSQYLLNWCVQI------AKGMNYLEER---RLVHRDLAARNV 140

Query: 57  LLDLNLEASVADFGTARLLHVD 78
           L+       + DFG A+LL  D
Sbjct: 141 LVKTPQHVKITDFGLAKLLGAD 162

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands for EGFR include EGF, heparin binding EGF-like growth factor (HBEGF), epiregulin, amphiregulin, TGFalpha, and betacellulin. Upon ligand binding, EGFR can form homo- or heterodimers with other EGFR subfamily members. The EGFR signaling pathway is one of the most important pathways regulating cell proliferation, differentiation, survival, and growth. Overexpression and mutation in the kinase domain of EGFR have been implicated in the development and progression of a variety of cancers. A number of monoclonal antibodies and small molecule inhibitors have been developed that target EGFR, including the antibodies Cetuximab and Panitumumab, which are used in combination with other therapies for the treatment of colorectal cancer and non-small cell lung carcinoma (NSCLC). The small molecule inhibitors Gefitinib (Iressa) and Erlotinib (Tarceva), already used for NSCLC, are undergoing clinical trials for other types of cancer including gastrointestinal, breast, head and neck, and bladder. Length = 316

>gnl|CDD|133220 cd05089, PTKc_Tie1, Catalytic domain of the Protein Tyrosine Kinase, Tie1

 Score = 36.9 bits (85), Expect = 4e-04
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 11  RDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFG 70
           ++   A  L   + +     VA  + YL        +HRD+++ N+L+  NL + +ADFG
Sbjct: 108 KEHGTASTLTSQQLLQFASDVATGMQYLSEK---QFIHRDLAARNVLVGENLASKIADFG 164

Query: 71  TAR 73
            +R
Sbjct: 165 LSR 167

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations. In vivo studies of Tie1 show that it is critical in vascular development. Length = 297

>gnl|CDD|133230 cd05099, PTKc_FGFR4, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

 Score = 36.9 bits (85), Expect = 4e-04
 Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 18  ELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH- 76
           +L++   VS    VA  + YL    +   +HRD+++ N+L+  +    +ADFG AR +H 
Sbjct: 130 QLSFKDLVSCAYQVARGMEYLE---SRRCIHRDLAARNVLVTEDNVMKIADFGLARGVHD 186

Query: 77  VDSSNRT 83
           +D   +T
Sbjct: 187 IDYYKKT 193

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Unlike other FGFRs, there is only one splice form of FGFR4. It binds FGF1, FGF2, FGF6, FGF19, and FGF23. FGF19 is a selective ligand for FGFR4. Although disruption of FGFR4 in mice causes no obvious phenotype, in vivo inhibition of FGFR4 in cultured skeletal muscle cells resulted in an arrest of muscle progenitor differentiation. FGF6 and FGFR4 are uniquely expressed in myofibers and satellite cells. FGF6/FGFR4 signaling appears to play a key role in the regulation of muscle regeneration. A polymorphism in FGFR4 is found in head and neck squamous cell carcinoma. Length = 314

>gnl|CDD|173713 cd05624, STKc_MRCK_beta, Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

 Score = 36.9 bits (85), Expect = 4e-04
 Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 6/48 (12%)

Query: 33  HALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSS 80
           H++  LH+      VHRDI  +N+LLD+N    +ADFG+   ++ D +
Sbjct: 116 HSIHQLHY------VHRDIKPDNVLLDMNGHIRLADFGSCLKMNQDGT 157

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues. Length = 331

>gnl|CDD|133189 cd05058, PTKc_Met_Ron, Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

 Score = 36.7 bits (85), Expect = 4e-04
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 3/43 (6%)

Query: 31  VAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTAR 73
           VA  + YL    +   VHRD+++ N +LD +    VADFG AR
Sbjct: 107 VAKGMEYL---ASKKFVHRDLAARNCMLDESFTVKVADFGLAR 146

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also called the HGF receptor. HGF/Met signaling plays a role in growth, transformation, cell motility, invasion, metastasis, angiogenesis, wound healing, and tissue regeneration. Aberrant expression of Met through mutations or gene amplification is associated with many human cancers including hereditary papillary renal and gastric carcinomas. The ligand for Ron is macrophage stimulating protein (MSP). Ron signaling is important in regulating cell motility, adhesion, proliferation, and apoptosis. Aberrant Ron expression is implicated in tumorigenesis and metastasis. Length = 262

>gnl|CDD|173750 cd07857, STKc_MPK1, Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

 Score = 36.6 bits (85), Expect = 4e-04
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 3/45 (6%)

Query: 34  ALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVD 78
            L Y+H   + +V+HRD+   N+L++ + E  + DFG AR    +
Sbjct: 117 GLKYIH---SANVLHRDLKPGNLLVNADCELKICDFGLARGFSEN 158

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall construction, morphogenesis, and ion homeostasis. MPK1 is activated in response to cell wall stress including heat stimulation, osmotic shock, UV irradiation, and any agents that interfere with cell wall biogenesis such as chitin antagonists, caffeine, or zymolase. MPK1 is regulated by the MAP2Ks Mkk1/2, which are regulated by the MAP3K Bck1. Pmk1 is also activated by multiple stresses including elevated temperatures, hyper- or hypotonic stress, glucose deprivation, exposure to cell-wall damaging compounds, and oxidative stress. It is regulated by the MAP2K Pek1, which is regulated by the MAP3K Mkh1. Length = 332

>gnl|CDD|132983 cd06652, STKc_MEKK2, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

 Score = 36.6 bits (84), Expect = 4e-04
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 5/61 (8%)

Query: 16  AIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL 75
           A+  N T++ +  + +   +SYLH +    +VHRDI   NIL D      + DFG ++ L
Sbjct: 102 ALTENVTRKYT--RQILEGVSYLHSNM---IVHRDIKGANILRDSVGNVKLGDFGASKRL 156

Query: 76  H 76
            
Sbjct: 157 Q 157

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their respective MAPKKs MEK1/2, JNK-activating kinase 2 (JNKK2), and MKK3/6. MEKK2 plays roles in T cell receptor signaling, immune synapse formation, cytokine gene expression, as well as in EGF and FGF receptor signaling. Length = 265

>gnl|CDD|173687 cd05596, STKc_ROCK, Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

 Score = 36.7 bits (85), Expect = 5e-04
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 3/41 (7%)

Query: 31  VAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGT 71
           V  AL  +H   ++  +HRD+  +N+LLD +    +ADFGT
Sbjct: 151 VVLALDAIH---SMGFIHRDVKPDNMLLDKSGHLKLADFGT 188

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via interaction with Rho GTPases and is involved in many cellular functions including contraction, adhesion, migration, motility, proliferation, and apoptosis. The ROCK subfamily consists of two isoforms, ROCK1 and ROCK2, which may be functionally redundant in some systems, but exhibit different tissue distributions. Both isoforms are ubiquitously expressed in most tissues, but ROCK2 is more prominent in brain and skeletal muscle while ROCK1 is more pronounced in the liver, testes, and kidney. Studies in knockout mice result in different phenotypes, suggesting that the two isoforms do not compensate for each other during embryonic development. Length = 370

>gnl|CDD|132977 cd06646, STKc_MAP4K5, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

 Score = 36.5 bits (84), Expect = 5e-04
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 27  IVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTA 72
           + +     L+YLH   +   +HRDI   NILL  N +  +ADFG A
Sbjct: 111 VCRETLQGLAYLH---SKGKMHRDIKGANILLTDNGDVKLADFGVA 153

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). MAP4K5 also facilitates Wnt signaling in B cells, and may therefore be implicated in the control of cell fate, proliferation, and polarity. Length = 267

>gnl|CDD|173739 cd07838, STKc_CDK4_6_like, Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

 Score = 36.5 bits (85), Expect = 5e-04
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 3/47 (6%)

Query: 34  ALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSS 80
            + +LH   +  +VHRD+   NIL+  + +  +ADFG AR+   + +
Sbjct: 119 GVDFLH---SHRIVHRDLKPQNILVTSDGQVKIADFGLARIYSFEMA 162

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both expressed ubiquitously, associate with all three D cyclins (D1, D2 and D3), and phosphorylate the retinoblastoma (pRb) protein. They are also regulated by the INK4 family of inhibitors which associate with either the CDK alone or the CDK/cyclin complex. CDK4 and CDK6 show differences in subcellular localization, sensitivity to some inhibitors, timing in activation, tumor selectivity, and possibly substrate profiles. Although CDK4 and CDK6 seem to show some redundancy, they also have discrete, nonoverlapping functions. CDK6 plays an important role in cell differentiation. Length = 287

>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

 Score = 36.5 bits (85), Expect = 5e-04
 Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 16/72 (22%)

Query: 4   GSLFCVLR-----DDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILL 58
           G L  +L      D+D A       R+ I + V  AL YLH   +  ++HRD+  +NIL+
Sbjct: 78  GDLASLLENVGSLDEDVA-------RIYIAEIVL-ALEYLH---SNGIIHRDLKPDNILI 126

Query: 59  DLNLEASVADFG 70
           D N    + DFG
Sbjct: 127 DSNGHLKLTDFG 138

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert relative to other kinases. The fungal kinases in this subfamily harbor other domains in addition to a central catalytic domain, which also contains an insert relative to MAST kinases like MASTL. Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. The fungal proteins Rim15 and cek1 are involved in the regulation of meiosis and mitosis, respectively. Length = 265

>gnl|CDD|173695 cd05604, STKc_SGK3, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

 Score = 36.5 bits (84), Expect = 5e-04
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 28  VKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTAR 73
              +A AL YLH   ++++V+RD+   NILLD      + DFG  +
Sbjct: 102 AAEIASALGYLH---SINIVYRDLKPENILLDSQGHVVLTDFGLCK 144

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels, and receptors. It plays a critical role in hair follicle morphogenesis and hair cycling. Length = 325

>gnl|CDD|173649 cd05093, PTKc_TrkB, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

 Score = 36.6 bits (84), Expect = 5e-04
 Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 3/65 (4%)

Query: 9   VLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVAD 68
           ++ + +   EL  ++ + I + +A  + YL    +   VHRD+++ N L+  NL   + D
Sbjct: 107 LMAEGNRPAELTQSQMLHIAQQIAAGMVYL---ASQHFVHRDLATRNCLVGENLLVKIGD 163

Query: 69  FGTAR 73
           FG +R
Sbjct: 164 FGMSR 168

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly expressed in the nervous system and in some non-neural tissues. It plays important roles in cell proliferation, differentiation, and survival. BDNF/Trk signaling plays a key role in regulating activity-dependent synaptic plasticity. TrkB also contributes to protection against gp120-induced neuronal cell death. TrkB overexpression is associated with poor prognosis in neuroblastoma (NB) and other human cancers. It acts as a suppressor of anoikis (detachment-induced apoptosis) and contributes to tumor metastasis. Length = 288

>gnl|CDD|132966 cd06635, STKc_TAO1, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

 Score = 36.2 bits (83), Expect = 5e-04
 Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 3/49 (6%)

Query: 26  SIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARL 74
           +I       L+YLH   + +++HRDI + NILL    +  +ADFG+A +
Sbjct: 129 AITHGALQGLAYLH---SHNMIHRDIKAGNILLTEPGQVKLADFGSASI 174

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuronal apoptosis. TAO1 interacts with the checkpoint proteins BubR1 and Mad2, and plays an important role in regulating mitotic progression, which is required for both chromosome congression and checkpoint-induced anaphase delay. TAO1 may play a role in protecting genomic stability. Length = 317

>gnl|CDD|240233 PTZ00024, PTZ00024, cyclin-dependent protein kinase; Provisional

 Score = 36.3 bits (84), Expect = 6e-04
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 3/47 (6%)

Query: 27  IVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTAR 73
           I+  + + L+ LH       +HRD+S  NI ++      +ADFG AR
Sbjct: 124 ILLQILNGLNVLH---KWYFMHRDLSPANIFINSKGICKIADFGLAR 167

Length = 335

>gnl|CDD|133229 cd05098, PTKc_FGFR1, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

 Score = 36.1 bits (83), Expect = 6e-04
 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 4/60 (6%)

Query: 25  VSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTAR-LLHVDSSNRT 83
           VS    VA  + YL    +   +HRD+++ N+L+  +    +ADFG AR + H+D   +T
Sbjct: 143 VSCAYQVARGMEYL---ASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKT 199

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Alternative splicing of FGFR1 transcripts produces a variety of isoforms, which are differentially expressed in cells. FGFR1 binds the ligands, FGF1 and FGF2, with high affinity and has also been reported to bind FGF4, FGF6, and FGF9. FGFR1 signaling is critical in the control of cell migration during embryo development. It promotes cell proliferation in fibroblasts. Nuclear FGFR1 plays a role in the regulation of transcription. Mutations, insertions or deletions of FGFR1 have been identified in patients with Kallman's syndrome (KS), an inherited disorder characterized by hypogonadotropic hypogonadism and loss of olfaction. Aberrant FGFR1 expression has been found in some human cancers including 8P11 myeloproliferative syndrome (EMS), breast cancer, and pancreatic adenocarcinoma. Length = 307

>gnl|CDD|173658 cd05114, PTKc_Tec_Rlk, Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

 Score = 36.0 bits (83), Expect = 6e-04
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 5/73 (6%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           ME G L   LR     +  +    +S+ + V   + YL  +   S +HRD+++ N L+  
Sbjct: 81  MENGCLLNYLRQRQGKLSKDML--LSMCQDVCEGMEYLERN---SFIHRDLAARNCLVSS 135

Query: 61  NLEASVADFGTAR 73
                V+DFG  R
Sbjct: 136 TGVVKVSDFGMTR 148

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. Instead of PH, Rlk contains an N-terminal cysteine-rich region. In addition to PH, Tec also contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Tec is more widely-expressed than other Tec subfamily kinases. It is found in endothelial cells, both B- and T-cells, and a variety of myeloid cells including mast cells, erythroid cells, platelets, macrophages and neutrophils. Rlk is expressed in T-cells and mast cell lines. Tec and Rlk are both key components of T-cell receptor (TCR) signaling. They are important in TCR-stimulated proliferation, IL-2 production and phopholipase C-gamma1 activation. Length = 256

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 36.4 bits (84), Expect = 6e-04
 Identities = 15/41 (36%), Positives = 25/41 (60%)

Query: 19  LNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLD 59
           L+W +R  I   +A AL +LH  C+ +VV  ++S   I++D
Sbjct: 777 LSWERRRKIAIGIAKALRFLHCRCSPAVVVGNLSPEKIIID 817

Length = 968

>gnl|CDD|173674 cd05583, STKc_MSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

 Score = 35.9 bits (83), Expect = 7e-04
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 34  ALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSSNRT 83
           AL +LH    L +++RDI   NILLD      + DFG ++    +   R 
Sbjct: 117 ALDHLHQ---LGIIYRDIKLENILLDSEGHVVLTDFGLSKEFLAEEEERA 163

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines. This triggers phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) in the C-terminal extension of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSKs are predominantly nuclear proteins. They are widely expressed in many tissues including heart, brain, lung, liver, kidney, and pancreas. There are two isoforms of MSK, called MSK1 and MSK2. Length = 288

>gnl|CDD|173692 cd05601, STKc_CRIK, Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

 Score = 35.9 bits (83), Expect = 7e-04
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)

Query: 34  ALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVD 78
           A+  +H    +  VHRDI   N+L+D      +ADFG+A  L  +
Sbjct: 114 AIHSVH---QMGYVHRDIKPENVLIDRTGHIKLADFGSAARLTAN 155

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnormal cytokinesis and massive apoptosis in neuronal precursors. A Down syndrome critical region protein TTC3 interacts with CRIK and inhibits CRIK-dependent neuronal differentiation and neurite extension. Length = 330

>gnl|CDD|173650 cd05094, PTKc_TrkC, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

 Score = 36.1 bits (83), Expect = 7e-04
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 18  ELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTAR 73
           EL  ++ + I   +A  + YL    +   VHRD+++ N L+  NL   + DFG +R
Sbjct: 119 ELGLSQMLHIASQIASGMVYL---ASQHFVHRDLATRNCLVGANLLVKIGDFGMSR 171

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some non-neural tissues including the developing heart. NT3/TrkC signaling plays an important role in the innervation of the cardiac conducting system and the development of smooth muscle cells. Mice deficient with NT3 and TrkC have multiple heart defects. NT3/TrkC signaling is also critical for the development and maintenance of enteric neurons that are important for the control of gut peristalsis. Length = 291

>gnl|CDD|132982 cd06651, STKc_MEKK3, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

 Score = 35.8 bits (82), Expect = 7e-04
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 3/48 (6%)

Query: 29  KSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH 76
           + +   +SYLH +    +VHRDI   NIL D      + DFG ++ L 
Sbjct: 113 RQILEGMSYLHSNM---IVHRDIKGANILRDSAGNVKLGDFGASKRLQ 157

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. In addition, MEKK3 is involved in interleukin-1 receptor and Toll-like receptor 4 signaling. It is also a specific regulator of the proinflammatory cytokines IL-6 and GM-CSF in some immune cells. MEKK3 also regulates calcineurin, which plays a critical role in T cell activation, apoptosis, skeletal myocyte differentiation, and cardiac hypertrophy. Length = 266

>gnl|CDD|143375 cd07870, STKc_PFTAIRE2, Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

 Score = 36.1 bits (83), Expect = 7e-04
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 3/39 (7%)

Query: 35  LSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTAR 73
           L+Y+H      ++HRD+   N+L+    E  +ADFG AR
Sbjct: 116 LAYIHGQ---HILHRDLKPQNLLISYLGELKLADFGLAR 151

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recessive form of juvenile ALS. The function of PFTAIRE-2 is not yet known. Length = 291

>gnl|CDD|88524 cd05623, STKc_MRCK_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

 Score = 36.2 bits (83), Expect = 7e-04
 Identities = 17/37 (45%), Positives = 23/37 (62%)

Query: 44  LSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSS 80
           L  VHRDI  +NIL+D+N    +ADFG+   L  D +
Sbjct: 121 LHYVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGT 157

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathway. Length = 332

>gnl|CDD|133247 cd05116, PTKc_Syk, Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

 Score = 36.1 bits (83), Expect = 7e-04
 Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 6/77 (7%)

Query: 2   ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLN 61
           E G L   L+ +    E N T+   +V  V+  + YL      + VHRD+++ N+LL   
Sbjct: 78  ELGPLNKFLQKNKHVTEKNITE---LVHQVSMGMKYLEET---NFVHRDLAARNVLLVTQ 131

Query: 62  LEASVADFGTARLLHVD 78
             A ++DFG ++ L  D
Sbjct: 132 HYAKISDFGLSKALGAD 148

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. More recently, Syk expression has been detected in other cell types (including epithelial cells, vascular endothelial cells, neurons, hepatocytes, and melanocytes), suggesting a variety of biological functions in non-immune cells. Syk plays a critical role in maintaining vascular integrity and in wound healing during embryogenesis. It also regulates Vav3, which is important in osteoclast function including bone development. In breast epithelial cells, where Syk acts as a negative regulator for epidermal growth factor receptor (EGFR) signaling, loss of Syk expression is associated with abnormal proliferation during cancer development suggesting a potential role as a tumor suppressor. In mice, Syk has been shown to inhibit malignant transformation of mammary epithelial cells induced with murine mammary tumor virus (MMTV). Length = 257

>gnl|CDD|173625 cd05032, PTKc_InsR_like, Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

 Score = 35.8 bits (83), Expect = 8e-04
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 3/45 (6%)

Query: 31  VAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL 75
           +A  ++YL        VHRD+++ N ++  +L   + DFG  R +
Sbjct: 128 IADGMAYLA---AKKFVHRDLAARNCMVAEDLTVKIGDFGMTRDI 169

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR and IGF-1R, which share 84% sequence identity in their kinase domains, display physiologically distinct yet overlapping functions in cell growth, differentiation, and metabolism. InsR activation leads primarily to metabolic effects while IGF-1R activation stimulates mitogenic pathways. In cells expressing both receptors, InsR/IGF-1R hybrids are found together with classical receptors. Both receptors can interact with common adaptor molecules such as IRS-1 and IRS-2. Length = 277

>gnl|CDD|173741 cd07843, STKc_CDC2L1, Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

 Score = 35.7 bits (83), Expect = 8e-04
 Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 3/40 (7%)

Query: 34  ALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTAR 73
            +++LH +    ++HRD+ ++N+LL+      + DFG AR
Sbjct: 118 GVAHLHDN---WILHRDLKTSNLLLNNRGILKICDFGLAR 154

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the major isoform, associates with cyclin L and is expressed throughout the cell cycle. It is involved in RNA processing and the regulation of transcription. CDK11(p58) associates with cyclin D3 and is expressed during the G2/M phase of the cell cycle. It plays roles in spindle morphogenesis, centrosome maturation, sister chromatid cohesion, and the completion of mitosis. CDK11(p46) is formed from the larger isoforms by caspases during TNFalpha- and Fas-induced apoptosis. It functions as a downstream effector kinase in apoptotic signaling pathways and interacts with eukaryotic initiation factor 3f (eIF3f), p21-activated kinase (PAK1), and Ran-binding protein (RanBPM). Length = 293

>gnl|CDD|173754 cd07865, STKc_CDK9, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

 Score = 35.8 bits (83), Expect = 8e-04
 Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 3/48 (6%)

Query: 26  SIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTAR 73
            ++K + + L Y+H +    ++HRD+ + NIL+  +    +ADFG AR
Sbjct: 123 KVMKMLLNGLYYIHRN---KILHRDMKAANILITKDGILKLADFGLAR 167

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multiple steps of gene expression including transcription elongation, mRNA synthesis, processing, export, and translation. It also plays a role in mediating cytokine induced transcription networks such as IL6-induced STAT3 signaling. In addition, the CDK9/cyclin T2a complex promotes muscle differentiation and enhances the function of some myogenic regulatory factors. Length = 310

>gnl|CDD|173758 cd08218, STKc_Nek1, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

 Score = 35.6 bits (82), Expect = 9e-04
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 15/75 (20%)

Query: 2   ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLN 61
           +RG LF       E   L+W  ++ +      AL ++H      ++HRDI S NI L  +
Sbjct: 93  QRGVLF------PEDQILDWFVQICL------ALKHVHDR---KILHRDIKSQNIFLTKD 137

Query: 62  LEASVADFGTARLLH 76
               + DFG AR+L+
Sbjct: 138 GTIKLGDFGIARVLN 152

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycystic kidney disease, which is characterized by benign polycystic tumors formed by abnormal overgrowth of renal epithelial cells. It appears also to be involved in DNA damage response, and may be important for both correct DNA damage checkpoint activation and DNA repair. Length = 256

>gnl|CDD|178763 PLN03224, PLN03224, probable serine/threonine protein kinase; Provisional

 Score = 35.8 bits (82), Expect = 9e-04
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 3/47 (6%)

Query: 26  SIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTA 72
            +++ V   L  LH    + +VHRDI   N+L+ ++ +  + DFG A
Sbjct: 313 GVMRQVLTGLRKLH---RIGIVHRDIKPENLLVTVDGQVKIIDFGAA 356

Length = 507

>gnl|CDD|173763 cd08223, STKc_Nek4, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

 Score = 35.7 bits (82), Expect = 9e-04
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%)

Query: 31  VAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL 75
           +A AL YLH      ++HRD+ + N+ L       V D G AR+L
Sbjct: 111 IAMALQYLHEK---HILHRDLKTQNVFLTRTNIIKVGDLGIARVL 152

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown. Length = 257

>gnl|CDD|173666 cd05575, STKc_SGK, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

 Score = 35.5 bits (82), Expect = 0.001
 Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 3/40 (7%)

Query: 31  VAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFG 70
           +A AL YLH   +L++++RD+   NILLD      + DFG
Sbjct: 105 IASALGYLH---SLNIIYRDLKPENILLDSQGHVVLTDFG 141

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell proliferation, and apoptosis. Length = 323

>gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

 Score = 35.5 bits (82), Expect = 0.001
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 7/67 (10%)

Query: 12  DDDEAIELNWTKRVSIVKSVAHALSYL--HHDCTLSVVHRDISSNNILLDLNLEASVADF 69
           D+     L+ +  + I   +A  + YL  HH      VHRD+++ N L+   L   ++DF
Sbjct: 114 DETVKSSLDCSDFLHIAIQIAAGMEYLSSHH-----FVHRDLAARNCLVGEGLTVKISDF 168

Query: 70  GTARLLH 76
           G +R ++
Sbjct: 169 GLSRDIY 175

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. They play important roles in bone and heart formation. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Drosophila Ror is expressed only in the developing nervous system during neurite outgrowth and neuronal differentiation, suggesting a role for Drosophila Ror in neural development. More recently, mouse Ror1 and Ror2 have also been found to play an important role in regulating neurite growth in central neurons. Ror1 and Ror2 are believed to have some overlapping and redundant functions. Length = 283

>gnl|CDD|132988 cd06657, STKc_PAK4, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

 Score = 35.8 bits (82), Expect = 0.001
 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 3/52 (5%)

Query: 19  LNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFG 70
           +N  +  ++  +V  ALS LH      V+HRDI S++ILL  +    ++DFG
Sbjct: 113 MNEEQIAAVCLAVLKALSVLH---AQGVIHRDIKSDSILLTHDGRVKLSDFG 161

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell morphology and cytoskeletal organization. It is essential for embryonic viability and proper neural development. Mice lacking PAK4 die due to defects in the fetal heart. In addition, their spinal cord motor neurons showed failure to differentiate and migrate. PAK4 also plays a role in cell survival and tumorigenesis. It is overexpressed in many primary tumors including colon, esophageal, and mammary tumors. PAK4 has also been implicated in viral and bacterial infection pathways. Length = 292

>gnl|CDD|173735 cd07831, STKc_MOK, Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

 Score = 35.7 bits (83), Expect = 0.001
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 4/44 (9%)

Query: 33  HALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH 76
            +L ++H +    + HRDI   NIL+  ++   +ADFG+ R ++
Sbjct: 111 KSLDHMHRN---GIFHRDIKPENILIKDDI-LKLADFGSCRGIY 150

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation. Length = 282

>gnl|CDD|133191 cd05060, PTKc_Syk_like, Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

 Score = 35.4 bits (82), Expect = 0.001
 Identities = 14/34 (41%), Positives = 22/34 (64%)

Query: 47  VHRDISSNNILLDLNLEASVADFGTARLLHVDSS 80
           VHRD+++ N+LL    +A ++DFG +R L   S 
Sbjct: 117 VHRDLAARNVLLVNRHQAKISDFGMSRALGAGSD 150

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. Syk is important in B-cell receptor (BCR) signaling, while Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Syk also plays a central role in Fc receptor-mediated phagocytosis in the adaptive immune system. Shark is exclusively expressed in ectodermally derived epithelia, and is localized preferentially to the apical surface of the epithelial cells, it may play a role in a signaling pathway for epithelial cell polarity. Length = 257

>gnl|CDD|173652 cd05100, PTKc_FGFR3, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

 Score = 35.8 bits (82), Expect = 0.001
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 3/59 (5%)

Query: 18  ELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH 76
           +L +   VS    VA  + YL    +   +HRD+++ N+L+  +    +ADFG AR +H
Sbjct: 130 QLTFKDLVSCAYQVARGMEYL---ASQKCIHRDLAARNVLVTEDNVMKIADFGLARDVH 185

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Many FGFR3 splice variants have been reported with the IIIb and IIIc isoforms being the predominant forms. FGFR3 IIIc is the isoform expressed in chondrocytes, the cells affected in dwarfism, while IIIb is expressed in epithelial cells. FGFR3 ligands include FGF1, FGF2, FGF4, FGF8, FGF9, and FGF23. It is a negative regulator of long bone growth. In the cochlear duct and in the lens, FGFR3 is involved in differentiation while it appears to have a role in cell proliferation in epithelial cells. Germline mutations in FGFR3 are associated with skeletal disorders including several forms of dwarfism. Some missense mutations are associated with multiple myeloma and carcinomas of the bladder and cervix. Overexpression of FGFR3 is found in thyroid carcinoma. Length = 334

>gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

 Score = 35.2 bits (81), Expect = 0.001
 Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 5/73 (6%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           M  G L   LR+  +  +   ++ + + K V   ++YL    +   +HRD+++ N L+D 
Sbjct: 81  MSNGCLLNYLREHGKRFQP--SQLLEMCKDVCEGMAYLE---SKQFIHRDLAARNCLVDD 135

Query: 61  NLEASVADFGTAR 73
                V+DFG +R
Sbjct: 136 QGCVKVSDFGLSR 148

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Btk contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Btk is expressed in B-cells, and a variety of myeloid cells including mast cells, platelets, neutrophils, and dendrictic cells. It interacts with a variety of partners, from cytosolic proteins to nuclear transcription factors, suggesting a diversity of functions. Stimulation of a diverse array of cell surface receptors, including antigen engagement of the B-cell receptor (BCR), leads to PH-mediated membrane translocation of Btk and subsequent phosphorylation by Src kinase and activation. Btk plays an important role in the life cycle of B-cells including their development, differentiation, proliferation, survival, and apoptosis. Mutations in Btk cause the primary immunodeficiency disease, X-linked agammaglobulinaemia (XLA) in humans. Bmx is primarily expressed in bone marrow and the arterial endothelium, and plays an important role in ischemia-induced angiogenesis. It facilitates arterial growth, capillary formation, vessel maturation, and bone marrow-derived endothelial progenitor cell mobilization. Length = 256

>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein Tyrosine Kinases

 Score = 35.1 bits (81), Expect = 0.001
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 5/73 (6%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           +  GSL   LR     + +   K + +    A  + YL        +HRD+++ N L+  
Sbjct: 74  VPGGSLLTFLRKKKNRLTVK--KLLQMSLDAAAGMEYLESKN---CIHRDLAARNCLVGE 128

Query: 61  NLEASVADFGTAR 73
           N    ++DFG +R
Sbjct: 129 NNVLKISDFGMSR 141

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes and Fer kinases play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Fes and Fer show redundancy in their biological functions. Length = 251

>gnl|CDD|173655 cd05110, PTKc_HER4, Catalytic domain of the Protein Tyrosine Kinase, HER4

 Score = 35.4 bits (81), Expect = 0.001
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 9/60 (15%)

Query: 19  LNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVD 78
           LNW  ++      A  + YL       +VHRD+++ N+L+       + DFG ARLL  D
Sbjct: 112 LNWCVQI------AKGMMYLEER---RLVHRDLAARNVLVKSPNHVKITDFGLARLLEGD 162

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands that bind HER4 fall into two groups, the neuregulins (or heregulins) and some EGFR (HER1) ligands including betacellulin, HBEGF, and epiregulin. All four neuregulins (NRG1-4) interact with HER4. Upon ligand binding, HER4 forms homo- or heterodimers with other HER proteins. HER4 is essential in embryonic development. It is implicated in mammary gland, cardiac, and neural development. As a postsynaptic receptor of NRG1, HER4 plays an important role in synaptic plasticity and maturation. The impairment of NRG1/HER4 signaling may contribute to schizophrenia. Length = 303

>gnl|CDD|173705 cd05614, STKc_MSK2_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

 Score = 35.3 bits (81), Expect = 0.001
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 34  ALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSSNRT 83
           AL +LH    L +V+RDI   NILLD      + DFG ++    +   RT
Sbjct: 117 ALEHLH---KLGIVYRDIKLENILLDSEGHVVLTDFGLSKEFLSEEKERT 163

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSK2 and MSK1 play nonredundant roles in activating histone H3 kinases, which play pivotal roles in compaction of the chromatin fiber. MSK2 is the required H3 kinase in response to stress stimuli and activation of the p38 MAPK pathway. MSK2 also plays a role in the pathogenesis of psoriasis. Length = 332

>gnl|CDD|173751 cd07860, STKc_CDK2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

 Score = 35.2 bits (81), Expect = 0.002
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 7/53 (13%)

Query: 25  VSIVKS----VAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTAR 73
           + ++KS    +   L++ H   +  V+HRD+   N+L++      +ADFG AR
Sbjct: 99  LPLIKSYLFQLLQGLAFCH---SHRVLHRDLKPQNLLINTEGAIKLADFGLAR 148

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. CDK2, together with CDK4, also regulates embryonic cell proliferation. Despite these important roles, mice deleted for the cdk2 gene are viable and normal except for being sterile. This may be due to compensation provided by CDK1 (also called Cdc2), which can also bind cyclin E and drive the G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 284

>gnl|CDD|133246 cd05115, PTKc_Zap-70, Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

 Score = 34.9 bits (80), Expect = 0.002
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 25  VSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSS 80
           V ++  V+  + YL      + VHRD+++ N+LL     A ++DFG ++ L  D S
Sbjct: 98  VELMHQVSMGMKYLEGK---NFVHRDLAARNVLLVNQHYAKISDFGLSKALGADDS 150

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its phosphorylation and activation. It then phosphorylates target proteins, which propagate the signals to downstream pathways. Zap-70 is hardly detected in normal peripheral B-cells, but is present in some B-cell malignancies. It is used as a diagnostic marker for chronic lymphocytic leukemia (CLL) as it is associated with the more aggressive subtype of the disease. Length = 257

>gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

 Score = 34.8 bits (81), Expect = 0.002
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 5/55 (9%)

Query: 26  SIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSS 80
           SI+  +   L+++H        HRD+   N+L+       +ADFG AR   + S 
Sbjct: 103 SIIYQILQGLAHIHK---HGFFHRDLKPENLLVSGPEVVKIADFGLAR--EIRSR 152

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertility. It functions as a coactivator of the androgen receptor in prostate cells. MRK, also called Intestinal Cell Kinase (ICK), is expressed ubiquitously, with highest expression in the ovary and uterus. A missense mutation in MRK causes endocrine-cerebro-osteodysplasia (ECO), suggesting that this protein plays an important role in the development of many organs. MAK and MRK may be involved in regulating cell cycle and cell fate. Ime2p is a meiosis-specific kinase that is important during meiotic initiation and during the later stages of meiosis. Mde3 functions downstream of the transcription factor Mei-4 which is essential for meiotic prophase I. Length = 283

>gnl|CDD|143363 cd07858, STKc_TEY_MAPK_plant, Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

 Score = 35.0 bits (81), Expect = 0.002
 Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 3/39 (7%)

Query: 35  LSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTAR 73
           L Y+H   + +V+HRD+  +N+LL+ N +  + DFG AR
Sbjct: 121 LKYIH---SANVLHRDLKPSNLLLNANCDLKICDFGLAR 156

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activation loop, TEY and TDY. This subfamily represents the TEY subtype and is further subdivided into three groups (A, B, and C). Group A is represented by AtMPK3, AtMPK6, Nicotiana tabacum BTF4 (NtNTF4), among others. They are mostly involved in environmental and hormonal responses. AtMPK3 and AtMPK6 are also key regulators for stomatal development and patterning. Group B is represented by AtMPK4, AtMPK13, and NtNTF6, among others. They may be involved in both cell division and environmental stress response. AtMPK4 also participates in regulating innate immunity. Group C is represented by AtMPK1, AtMPK2, NtNTF3, Oryza sativa MAPK4 (OsMAPK4), among others. They may also be involved in stress responses. AtMPK1 and AtMPK2 are activated following mechanical injury and in the presence of stress chemicals such as jasmonic acid, hydrogen peroxide and abscisic acid. OsMAPK4 is also called OsMSRMK3 for Multiple Stress-Responsive MAPK3. Length = 337

>gnl|CDD|143344 cd07839, STKc_CDK5, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

 Score = 35.1 bits (81), Expect = 0.002
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 7/52 (13%)

Query: 26  SIVKS----VAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTAR 73
            IVKS    +   L++ H     +V+HRD+   N+L++ N E  +ADFG AR
Sbjct: 99  EIVKSFMFQLLKGLAFCHSH---NVLHRDLKPQNLLINKNGELKLADFGLAR 147

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also important in synaptic plasticity and learning. CDK5 also participates in protecting against cell death and promoting angiogenesis. Impaired CDK5 activity is implicated in Alzheimer's disease, amyotrophic lateral sclerosis, Parkinson's disease, Huntington's disease and acute neuronal injury. Length = 284

>gnl|CDD|133175 cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

 Score = 34.7 bits (80), Expect = 0.002
 Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 3/68 (4%)

Query: 8   CVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVA 67
           C L + +    L+  + V +   +A  +SYLH      V+H+DI++ N ++D  L+  + 
Sbjct: 103 CRLGEANNPQALSTQQLVHMAIQIACGMSYLH---KRGVIHKDIAARNCVIDEELQVKIT 159

Query: 68  DFGTARLL 75
           D   +R L
Sbjct: 160 DNALSRDL 167

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It acts as a chemorepulsive axon guidance receptor of Wnt glycoproteins and is responsible for the establishment of axon tracts during the development of the central nervous system. In addition, studies in mice reveal that Ryk is essential in skeletal, craniofacial, and cardiac development. Thus, it appears Ryk is involved in signal transduction despite its lack of kinase activity. Ryk may function as an accessory protein that modulates the signals coming from catalytically active partner RTKs such as the Eph receptors. Length = 280

>gnl|CDD|143349 cd07844, STKc_PCTAIRE_like, Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

 Score = 34.7 bits (80), Expect = 0.002
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)

Query: 35  LSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTAR 73
           L+Y H      V+HRD+   N+L+    E  +ADFG AR
Sbjct: 116 LAYCHQR---RVLHRDLKPQNLLISERGELKLADFGLAR 151

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the membrane-associated cyclin Y. PCTAIRE-like proteins show unusual expression patterns with high levels in post-mitotic tissues, suggesting that they may be involved in regulating post-mitotic cellular events. Length = 291

>gnl|CDD|140289 PTZ00263, PTZ00263, protein kinase A catalytic subunit; Provisional

 Score = 34.8 bits (80), Expect = 0.002
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 3/40 (7%)

Query: 34  ALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTAR 73
           A  YLH   +  +++RD+   N+LLD      V DFG A+
Sbjct: 130 AFEYLH---SKDIIYRDLKPENLLLDNKGHVKVTDFGFAK 166

Length = 329

>gnl|CDD|173740 cd07842, STKc_CDK8_like, Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

 Score = 34.6 bits (80), Expect = 0.002
 Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 15/67 (22%)

Query: 22  TKRVSI----VKS----VAHALSYLHHDCTLSVVHRDISSNNILL--DLNLEASV--ADF 69
            KRVSI    VKS    + + + YLH +    V+HRD+   NIL+  +      V   D 
Sbjct: 100 AKRVSIPPSMVKSLLWQILNGVHYLHSNW---VLHRDLKPANILVMGEGPERGVVKIGDL 156

Query: 70  GTARLLH 76
           G ARL +
Sbjct: 157 GLARLFN 163

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA polymerase II (RNAP II)-dependent transcription. CDC2L6 also associates with Mediator in complexes lacking CDK8. In VP16-dependent transcriptional activation, CDK8 and CDC2L6 exerts opposing effects by positive and negative regulation, respectively, in similar conditions. Length = 316

>gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

 Score = 34.5 bits (79), Expect = 0.002
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)

Query: 31  VAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL 75
           V   ++YL       V+HRD+++ N L+  N    V+DFG  R +
Sbjct: 109 VCEGMAYLESSN---VIHRDLAARNCLVGENQVVKVSDFGMTRFV 150

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Itk contains the Tec homology (TH) domain containing one proline-rich region and a zinc-binding region. Tec kinases are expressed mainly by haematopoietic cells. Itk is expressed in T-cells and mast cells, and is important in their development and differentiation. Of the three Tec kinases expressed in T-cells, Itk plays the predominant role in T-cell receptor (TCR) signaling. It is activated by phosphorylation upon TCR crosslinking and is involved in the pathway resulting in phospholipase C-gamma1 activation and actin polymerization. It also plays a role in the downstream signaling of the T-cell costimulatory receptor CD28, the T-cell surface receptor CD2, and the chemokine receptor CXCR4. In addition, Itk is crucial for the development of T-helper(Th)2 effector responses. Length = 256

>gnl|CDD|173682 cd05591, STKc_nPKC_epsilon, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

 Score = 34.8 bits (80), Expect = 0.002
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 3/40 (7%)

Query: 31  VAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFG 70
           V  AL +LH      V++RD+  +NILLD      +ADFG
Sbjct: 105 VTLALMFLHRH---GVIYRDLKLDNILLDAEGHCKLADFG 141

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to neoplastic transformation depending on the cell type. It contributes to oncogenesis by inducing disordered cell growth and inhibiting cell death. It also plays a role in tumor invasion and metastasis. PKC-epsilon has also been found to confer cardioprotection against ischemia and reperfusion-mediated damage. Other cellular functions include the regulation of gene expression, cell adhesion, and cell motility. Length = 321

>gnl|CDD|133172 cd05040, PTKc_Ack_like, Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

 Score = 34.7 bits (80), Expect = 0.002
 Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 10/77 (12%)

Query: 2   ERGSLFCVLRDDDEA---IELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILL 58
             GSL   LR D      I       V I       + YL        +HRD+++ NILL
Sbjct: 78  PLGSLLDRLRKDALGHFLISTLCDYAVQIAN----GMRYLESK---RFIHRDLAARNILL 130

Query: 59  DLNLEASVADFGTARLL 75
             + +  + DFG  R L
Sbjct: 131 ASDDKVKIGDFGLMRAL 147

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with androgen-independent prostate cancer progression. Tnk1 regulates TNFalpha signaling and may play an important role in cell death. Length = 257

>gnl|CDD|173680 cd05589, STKc_PKN, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

 Score = 34.7 bits (80), Expect = 0.002
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 3/40 (7%)

Query: 31  VAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFG 70
           V   L YLH +    +V+RD+  +N+LLD      +ADFG
Sbjct: 110 VVLGLQYLHEN---KIVYRDLKLDNLLLDTEGFVKIADFG 146

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved in many biological processes including cytokeletal regulation, cell adhesion, vesicle transport, glucose transport, regulation of meiotic maturation and embryonic cell cycles, signaling to the nucleus, and tumorigenesis. Length = 324

>gnl|CDD|143367 cd07862, STKc_CDK6, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

 Score = 34.6 bits (79), Expect = 0.003
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 3/41 (7%)

Query: 34  ALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARL 74
            L +LH   +  VVHRD+   NIL+  + +  +ADFG AR+
Sbjct: 122 GLDFLH---SHRVVHRDLKPQNILVTSSGQIKLADFGLARI 159

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytoplasm. It is also present in the ruffling edge of spreading fibroblasts and may play a role in cell spreading. It binds to the p21 inhibitor without any effect on its own activity and it is overexpressed in squamous cell carcinomas and neuroblastomas. CDK6 has also been shown to inhibit cell differentiation in many cell types. Length = 290

>gnl|CDD|173673 cd05582, STKc_RSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

 Score = 34.4 bits (79), Expect = 0.003
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 4/53 (7%)

Query: 31  VAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSSNRT 83
           +A AL +LH   +L +++RD+   NILLD      + DFG ++   +D   + 
Sbjct: 107 LALALDHLH---SLGIIYRDLKPENILLDEEGHIKLTDFGLSK-ESIDHEKKA 155

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylates all known RSK substrates. RSKs act as downstream effectors of mitogen-activated protein kinase (MAPK) and play key roles in mitogen-activated cell growth, differentiation, and survival. Mammals possess four RSK isoforms (RSK1-4) from distinct genes. RSK proteins are also referred to as MAP kinase-activated protein kinases (MAPKAPKs), p90-RSKs, or p90S6Ks. Length = 318

>gnl|CDD|173631 cd05045, PTKc_RET, Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

 Score = 34.6 bits (79), Expect = 0.003
 Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 5/69 (7%)

Query: 12  DDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGT 71
            D+ A  L     +S    ++  + YL     + +VHRD+++ N+L+    +  ++DFG 
Sbjct: 119 PDERA--LTMGDLISFAWQISRGMQYLAE---MKLVHRDLAARNVLVAEGRKMKISDFGL 173

Query: 72  ARLLHVDSS 80
           +R ++ + S
Sbjct: 174 SRDVYEEDS 182

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leading to autophosphorylation, activation, and intracellular signaling. RET is essential for the development of the sympathetic, parasympathetic and enteric nervous systems, and the kidney. RET disruption by germline mutations causes diseases in humans including congenital aganglionosis of the gastrointestinal tract (Hirschsprung's disease) and three related inherited cancers: multiple endocrine neoplasia type 2A (MEN2A), MEN2B, and familial medullary thyroid carcinoma (FMTC). Length = 290

>gnl|CDD|143376 cd07871, STKc_PCTAIRE3, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

 Score = 34.2 bits (78), Expect = 0.003
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 3/39 (7%)

Query: 35  LSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTAR 73
           LSY H      ++HRD+   N+L++   E  +ADFG AR
Sbjct: 116 LSYCHKR---KILHRDLKPQNLLINEKGELKLADFGLAR 151

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filaments (PHFs) and stimulate Tau phosphorylation. As AD progresses, phosphorylated Tau aggregates and forms PHFs, which leads to the formation of neurofibrillary tangles (NFTs). In human glioma cells, PCTAIRE-3 induces cell cycle arrest and cell death. Length = 288

>gnl|CDD|133237 cd05106, PTKc_CSF-1R, Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

 Score = 34.4 bits (79), Expect = 0.003
 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 7/78 (8%)

Query: 4   GSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYL-HHDCTLSVVHRDISSNNILLDLNL 62
            S      +D   ++L+   R S    VA  + +L   +C    +HRD+++ N+LL    
Sbjct: 196 DSKDEEDTEDSWPLDLDDLLRFSS--QVAQGMDFLASKNC----IHRDVAARNVLLTDGR 249

Query: 63  EASVADFGTARLLHVDSS 80
            A + DFG AR +  DS+
Sbjct: 250 VAKICDFGLARDIMNDSN 267

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is critical in the regulation of macrophages and osteoclasts. It leads to increases in gene transcription and protein translation, and induces cytoskeletal remodeling. CSF-1R signaling leads to a variety of cellular responses including survival, proliferation, and differentiation of target cells. It plays an important role in innate immunity, tissue development and function, and the pathogenesis of some diseases including atherosclerosis and cancer. CSF-1R signaling is also implicated in mammary gland development during pregnancy and lactation. Aberrant CSF-1/CSF-1R expression correlates with tumor cell invasiveness, poor clinical prognosis, and bone metastasis in breast cancer. Although the structure of the human CSF-1R catalytic domain is known, it is excluded from this specific alignment model because it contains a deletion in its sequence. Length = 374

>gnl|CDD|132951 cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

 Score = 34.4 bits (79), Expect = 0.003
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (4%)

Query: 27  IVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFG 70
           I  +V   L+YL++     ++HRDI  +NIL++   +  + DFG
Sbjct: 108 IAVAVVEGLTYLYN--VHRIMHRDIKPSNILVNSRGQIKLCDFG 149

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Byr1 from Schizosaccharomyces pombe, FUZ7 from Ustilago maydis, and related proteins. Byr1 phosphorylates its downstream target, the MAPK Spk1, and is regulated by the MAPKKK Byr2. The Spk1 cascade is pheromone-responsive and is essential for sporulation and sexual differentiation in fission yeast. FUZ7 phosphorylates and activates its target, the MAPK Crk1, which is required in mating and virulence in U. maydis. Length = 284

>gnl|CDD|173676 cd05585, STKc_YPK1_like, Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

 Score = 34.1 bits (78), Expect = 0.003
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 4/50 (8%)

Query: 34  ALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSSNRT 83
           AL  LH     +V++RD+   NILLD     ++ DFG  + L++   ++T
Sbjct: 105 ALENLH---KFNVIYRDLKPENILLDYQGHIALCDFGLCK-LNMKDDDKT 150

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It plays a role in cell growth and sexual development. Length = 312

>gnl|CDD|173701 cd05610, STKc_MASTL, Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

 Score = 34.1 bits (78), Expect = 0.003
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 25  VSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARL 74
           V  +  VA AL YLH      ++HRD+  +N+L+       + DFG +++
Sbjct: 107 VKYISEVALALDYLHRH---GIIHRDLKPDNMLISNEGHIKLTDFGLSKV 153

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ14813 is associated with autosomal dominant thrombocytopenia. To date, the function of MASTL is unknown. Length = 669

>gnl|CDD|173760 cd08220, STKc_Nek8, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

 Score = 34.1 bits (78), Expect = 0.003
 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 26  SIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLN-LEASVADFGTARLLHVDSSNRTL 84
           +I+      L  LHH  T  ++HRD+ + NILLD + +   + DFG +++L   S   T+
Sbjct: 102 TILHFFVQILLALHHVHTKLILHRDLKTQNILLDKHKMVVKIGDFGISKILSSKSKAYTV 161

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with a rare form of juvenile renal cystic disease, nephronophthisis type 9. It has been suggested that a defect in the ciliary localization of Nek8 contributes to the development of cysts manifested by these diseases. Length = 256

>gnl|CDD|173662 cd05571, STKc_PKB, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

 Score = 34.0 bits (78), Expect = 0.004
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 3/37 (8%)

Query: 34  ALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFG 70
           AL YLH   +  VV+RD+   N++LD +    + DFG
Sbjct: 107 ALGYLH---SCDVVYRDLKLENLMLDKDGHIKITDFG 140

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having been implicated in tumor initiation, progression, and metastasis. Length = 323

>gnl|CDD|173702 cd05611, STKc_Rim15_like, Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

 Score = 34.0 bits (78), Expect = 0.004
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 3/40 (7%)

Query: 34  ALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTAR 73
            +  LH      ++HRDI   N+L+D      + DFG +R
Sbjct: 109 GVEDLHQR---GIIHRDIKPENLLIDQTGHLKLTDFGLSR 145

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a downstream effector of PKA and regulates entry into stationary phase (G0). Thus, it plays a crucial role in regulating yeast proliferation, differentiation, and aging. Cek1 may facilitate progression of mitotic anaphase. Length = 260

>gnl|CDD|173648 cd05092, PTKc_TrkA, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

 Score = 33.8 bits (77), Expect = 0.004
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 18  ELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTAR 73
           +L   + ++I   +A  + YL    +L  VHRD+++ N L+   L   + DFG +R
Sbjct: 118 QLTLGQMLAIASQIASGMVYL---ASLHFVHRDLATRNCLVGQGLVVKIGDFGMSR 170

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory and sympathetic neurons of the peripheral nervous system, and in basal forebrain cholinergic neurons of the central nervous system. It is critical for neuronal growth, differentiation and survival. Alternative TrkA splicing has been implicated as a pivotal regulator of neuroblastoma (NB) behavior. Normal TrkA expression is associated with better NB prognosis, while the hypoxia-regulated TrkAIII splice variant promotes NB pathogenesis and progression. Aberrant TrkA expression has also been demonstrated in non-neural tumors including prostate, breast, lung, and pancreatic cancers. Length = 280

>gnl|CDD|132965 cd06634, STKc_TAO2, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

 Score = 33.9 bits (77), Expect = 0.004
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 26  SIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL 75
           ++       L+YLH     +++HRD+ + NILL       + DFG+A ++
Sbjct: 119 AVTHGALQGLAYLHSH---NMIHRDVKAGNILLSEPGLVKLGDFGSASIM 165

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. TAO2 contains a long C-terminal extension with autoinhibitory segments. It is activated by the release of this inhibition and the phosphorylation of its activation loop serine. TAO2 functions as a regulator of actin cytoskeletal and microtubule organization. In addition, it regulates the transforming growth factor-activated kinase 1 (TAK1), which is a MAPKKK that plays an essential role in the signaling pathways of tumor necrosis factor (TNF), interleukin 1 (IL-1), and Toll-like receptor (TLR). Length = 308

>gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

 Score = 33.8 bits (77), Expect = 0.004
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 4/73 (5%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           M +GSL   LR    ++ L     +     V  A+ YL  +   + VHRD+++ N+L+  
Sbjct: 82  MAKGSLVDYLRSRGRSV-LGGDCLLKFSLDVCEAMEYLEAN---NFVHRDLAARNVLVSE 137

Query: 61  NLEASVADFGTAR 73
           +  A V+DFG  +
Sbjct: 138 DNVAKVSDFGLTK 150

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Csk is expressed in a wide variety of tissues. As a negative regulator of Src, Csk plays a role in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, Csk also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. Length = 256

>gnl|CDD|240344 PTZ00283, PTZ00283, serine/threonine protein kinase; Provisional

 Score = 33.7 bits (77), Expect = 0.004
 Identities = 15/37 (40%), Positives = 23/37 (62%)

Query: 38  LHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARL 74
           +HH  +  ++HRDI S NILL  N    + DFG +++
Sbjct: 156 VHHVHSKHMIHRDIKSANILLCSNGLVKLGDFGFSKM 192

Length = 496

>gnl|CDD|133212 cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

 Score = 33.6 bits (77), Expect = 0.004
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 47  VHRDISSNNILLDLNLEASVADFGTARLLHVD 78
           VHRD+++ NIL++      + DFG  ++L  D
Sbjct: 130 VHRDLATRNILVESENRVKIGDFGLTKVLPQD 161

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak2 is widely expressed in many tissues while Jak3 is expressed only in hematopoietic cells. Jak2 is essential for the signaling of hormone-like cytokines such as growth hormone, erythropoietin, thrombopoietin, and prolactin, as well as some IFNs and cytokines that signal through the IL-3 and gp130 receptors. Jak3 binds the shared receptor subunit common gamma chain and thus, is essential in the signaling of cytokines that use it such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice results in an embryonic lethal phenotype with multiple defects including erythropoietic and cardiac abnormalities. It is the only Jak gene that results in a lethal phenotype when disrupted in mice. A mutation in the pseudokinase domain of Jak2, V617F, is present in many myeloproliferative diseases, including almost all patients with polycythemia vera, and 50% of patients with essential thrombocytosis and myelofibrosis. Jak3 is important in lymphoid development and myeloid cell differentiation. Inactivating mutations in Jak3 have been reported in humans with severe combined immunodeficiency (SCID). Length = 284

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	84
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	99.73
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	99.72
KOG0595	429	consensus Serine/threonine-protein kinase involved	99.71
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	99.7
KOG1187	361	consensus Serine/threonine protein kinase [Signal	99.69
KOG0575	592	consensus Polo-like serine/threonine protein kinas	99.68
KOG0598	357	consensus Ribosomal protein S6 kinase and related	99.67
KOG0583	370	consensus Serine/threonine protein kinase [Signal	99.66
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	99.65
KOG0581	364	consensus Mitogen-activated protein kinase kinase	99.64
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	99.61
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	99.61
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	99.6
KOG0611	668	consensus Predicted serine/threonine protein kinas	99.6
KOG0192	362	consensus Tyrosine kinase specific for activated (	99.58
KOG0198	313	consensus MEKK and related serine/threonine protei	99.57
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	99.57
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	99.57
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	99.56
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	99.54
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	99.53
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	99.53
KOG0661	538	consensus MAPK related serine/threonine protein ki	99.52
KOG0578	550	consensus p21-activated serine/threonine protein k	99.52
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	99.51
KOG0605	550	consensus NDR and related serine/threonine kinases	99.5
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	99.5
KOG0589	426	consensus Serine/threonine protein kinase [General	99.48
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	99.48
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	99.47
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	99.47
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	99.47
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	99.47
KOG1989	738	consensus ARK protein kinase family [Signal transd	99.46
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	99.46
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	99.46
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	99.46
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	99.46
KOG0584	632	consensus Serine/threonine protein kinase [General	99.46
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	99.46
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	99.45
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	99.45
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	99.45
KOG0610	459	consensus Putative serine/threonine protein kinase	99.45
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	99.45
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	99.45
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	99.44
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	99.44
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	99.44
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	99.44
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	99.44
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	99.44
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	99.44
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	99.44
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	99.44
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	99.43
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	99.43
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	99.43
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	99.43
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	99.43
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	99.43
PTZ00263	329	protein kinase A catalytic subunit; Provisional	99.43
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	99.43
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	99.43
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	99.43
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	99.43
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	99.43
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	99.43
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	99.43
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	99.42
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	99.42
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	99.42
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	99.42
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	99.42
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	99.42
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	99.42
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	99.42
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	99.41
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	99.41
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	99.41
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	99.41
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	99.41
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	99.4
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	99.4
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	99.39
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	99.39
KOG0582	516	consensus Ste20-like serine/threonine protein kina	99.38
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	99.38
PTZ00283	496	serine/threonine protein kinase; Provisional	99.38
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	99.38
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	99.37
PTZ00267	478	NIMA-related protein kinase; Provisional	99.37
KOG0694	694	consensus Serine/threonine protein kinase [Signal	99.37
KOG4717	864	consensus Serine/threonine protein kinase [Signal	99.37
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	99.37
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	99.36
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	99.36
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	99.36
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	99.36
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	99.36
KOG0586	596	consensus Serine/threonine protein kinase [General	99.36
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	99.36
KOG3653	534	consensus Transforming growth factor beta/activin	99.35
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	99.35
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	99.35
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	99.35
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	99.35
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	99.35
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	99.34
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	99.34
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	99.34
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	99.33
KOG4721	904	consensus Serine/threonine protein kinase, contain	99.33
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	99.33
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	99.33
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	99.33
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	99.33
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	99.33
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	99.32
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	99.32
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	99.32
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	99.32
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	99.32
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	99.31
PHA03212	391	serine/threonine kinase US3; Provisional	99.31
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	99.31
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	99.31
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	99.31
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	99.31
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	99.31
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	99.31
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	99.3
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	99.3
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	99.3
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	99.3
PHA03209	357	serine/threonine kinase US3; Provisional	99.3
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	99.3
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	99.3
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	99.3
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	99.3
PHA03211	461	serine/threonine kinase US3; Provisional	99.3
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	99.29
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	99.29
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	99.29
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	99.29
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	99.29
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	99.29
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	99.29
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	99.29
PHA03207	392	serine/threonine kinase US3; Provisional	99.29
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	99.28
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	99.28
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	99.28
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	99.28
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	99.28
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	99.28
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	99.28
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	99.28
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	99.27
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	99.27
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	99.27
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	99.27
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	99.27
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	99.27
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	99.27
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	99.27
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	99.27
PHA02988	283	hypothetical protein; Provisional	99.26
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	99.26
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	99.26
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	99.26
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	99.26
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	99.26
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	99.26
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	99.26
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	99.26
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	99.26
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	99.26
KOG0690	516	consensus Serine/threonine protein kinase [Signal	99.25
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	99.25
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	99.25
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	99.25
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	99.25
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	99.25
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	99.25
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	99.25
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	99.25
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	99.25
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	99.25
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	99.25
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	99.25
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	99.25
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	99.25
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	99.25
PHA02882	294	putative serine/threonine kinase; Provisional	99.24
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	99.24
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	99.24
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	99.24
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	99.24
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	99.24
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	99.24
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.24
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	99.23
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	99.23
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	99.23
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	99.23
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	99.23
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	99.23
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	99.23
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	99.22
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	99.22
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	99.22
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	99.22
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	99.22
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	99.22
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	99.22
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	99.22
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	99.22
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	99.21
KOG2052	513	consensus Activin A type IB receptor, serine/threo	99.21
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	99.21
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	99.21
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	99.21
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	99.21
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	99.21
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	99.21
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	99.21
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	99.21
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	99.21
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	99.21
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	99.2
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	99.2
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	99.2
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	99.2
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	99.2
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	99.2
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	99.2
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	99.2
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	99.2
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	99.2
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	99.2
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	99.2
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	99.19
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	99.19
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	99.19
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	99.19
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	99.19
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	99.18
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	99.18
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	99.18
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	99.18
PTZ00284	467	protein kinase; Provisional	99.18
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	99.18
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	99.18
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	99.18
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	99.18
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	99.18
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	99.17
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	99.17
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	99.17
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	99.17
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	99.17
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	99.17
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	99.17
PTZ00036	440	glycogen synthase kinase; Provisional	99.17
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	99.17
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	99.17
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	99.17
PLN00034	353	mitogen-activated protein kinase kinase; Provision	99.17
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	99.17
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	99.16
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	99.16
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	99.16
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	99.16
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	99.16
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	99.16
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	99.16
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	99.16
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	99.16
PLN00181	793	protein SPA1-RELATED; Provisional	99.16
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	99.16
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	99.16
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	99.16
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	99.15
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	99.15
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	99.15
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	99.15
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	99.15
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	99.15
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	99.15
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	99.15
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	99.15
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	99.15
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	99.15
KOG0607	463	consensus MAP kinase-interacting kinase and relate	99.15
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	99.15
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	99.14
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	99.14
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	99.14
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	99.13
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	99.13
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	99.13
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	99.13
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	99.12
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	99.12
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	99.12
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	99.12
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	99.12
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	99.12
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	99.12
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	99.11
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	99.11
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	99.11
KOG0695	593	consensus Serine/threonine protein kinase [Signal	99.11
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	99.11
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	99.11
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	99.1
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	99.1
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	99.1
PHA03210	501	serine/threonine kinase US3; Provisional	99.1
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	99.1
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	99.1
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	99.09
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	99.09
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	99.09
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	99.09
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	99.08
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	99.08
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	99.07
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	99.07
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	99.07
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	99.07
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	99.07
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	99.07
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	99.07
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	99.07
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.06
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	99.06
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	99.06
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	99.06
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	99.06
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	99.06
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	99.06
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	99.06
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	99.06
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	99.05
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	99.05
PLN03224	507	probable serine/threonine protein kinase; Provisio	99.05
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	99.05
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	99.05
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	99.05
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	99.04
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	99.04
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	99.04
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	99.03
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	99.03
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	99.03
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	99.03
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	99.03
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	99.02
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	99.02
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	99.02
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	99.01
KOG1152	772	consensus Signal transduction serine/threonine kin	99.01
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	99.01
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	99.01
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	99.01
PTZ00266	1021	NIMA-related protein kinase; Provisional	99.01
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	99.0
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	99.0
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	99.0
PTZ00024	335	cyclin-dependent protein kinase; Provisional	99.0
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	98.99
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	98.99
KOG0596	677	consensus Dual specificity; serine/threonine and t	98.99
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	98.99
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	98.98
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	98.98
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	98.98
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	98.98
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	98.98
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	98.97
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	98.97
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	98.95
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	98.94
PRK09188	365	serine/threonine protein kinase; Provisional	98.94
PLN00009	294	cyclin-dependent kinase A; Provisional	98.94
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	98.94
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	98.92
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	98.91
smart00090	237	RIO RIO-like kinase.	98.91
KOG0201	467	consensus Serine/threonine protein kinase [Signal	98.9
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	98.88
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	98.86
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	98.85
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	98.84
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	98.83
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	98.83
KOG0577	948	consensus Serine/threonine protein kinase [Signal	98.83
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	98.82
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	98.81
PRK12274	218	serine/threonine protein kinase; Provisional	98.79
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	98.77
KOG1027	903	consensus Serine/threonine protein kinase and endo	98.77
PRK10345	210	hypothetical protein; Provisional	98.75
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	98.74
PRK14879	211	serine/threonine protein kinase; Provisional	98.73
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	98.73
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	98.73
PRK09605	535	bifunctional UGMP family protein/serine/threonine	98.72
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	98.68
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.6
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	98.6
KOG0590	601	consensus Checkpoint kinase and related serine/thr	98.54
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	98.47
COG0515	384	SPS1 Serine/threonine protein kinase [General func	98.46
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	98.45
KOG0576	829	consensus Mitogen-activated protein kinase kinase	98.34
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	98.34
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	98.31
KOG1167	418	consensus Serine/threonine protein kinase of the C	98.29
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	98.28
KOG4158	598	consensus BRPK/PTEN-induced protein kinase [Signal	98.27
KOG1290	590	consensus Serine/threonine protein kinase [Signal	98.22
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	98.14
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	98.12
KOG1266	458	consensus Protein kinase [Signal transduction mech	98.07
KOG1023	484	consensus Natriuretic peptide receptor, guanylate	97.94
PF06293	206	Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family;	97.89
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	97.86
KOG3087	229	consensus Serine/threonine protein kinase [General	97.77
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	97.7
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	97.69
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	97.68
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	97.66
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	97.65
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	97.58
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	97.42
PRK09902	216	hypothetical protein; Provisional	97.26
KOG3741	655	consensus Poly(A) ribonuclease subunit [RNA proces	97.16
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	97.07
PF01163	188	RIO1: RIO1 family; InterPro: IPR018934 Protein pho	97.06
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	97.04
KOG0606	1205	consensus Microtubule-associated serine/threonine	96.76
KOG0590	601	consensus Checkpoint kinase and related serine/thr	96.59
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	95.54
PF06176	229	WaaY: Lipopolysaccharide core biosynthesis protein	95.1
KOG1243	690	consensus Protein kinase [General function predict	94.73
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	94.73
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	94.35
COG0661	517	AarF Predicted unusual protein kinase [General fun	93.99
cd05155	235	APH_ChoK_like_1 Uncharacterized bacterial proteins	93.5
COG0478	304	RIO-like serine/threonine protein kinase fused to	93.4
KOG1235	538	consensus Predicted unusual protein kinase [Genera	93.33
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	93.24
cd05150	244	APH Aminoglycoside 3'-phosphotransferase (APH). Th	92.69
PF12260	188	PIP49_C: Protein-kinase domain of FAM69; InterPro:	92.49
PRK05231	319	homoserine kinase; Provisional	92.0
cd05156	302	ChoK_euk Choline Kinase (ChoK) in eukaryotes. The	91.43
KOG2137	700	consensus Protein kinase [Signal transduction mech	91.32
PF01636	239	APH: Phosphotransferase enzyme family This family	91.23
COG1718	268	RIO1 Serine/threonine protein kinase involved in c	91.19
COG3173	321	Predicted aminoglycoside phosphotransferase [Gener	90.96
TIGR02172	226	Fb_sc_TIGR02172 Fibrobacter succinogenes paralogou	90.46
cd05153	296	HomoserineK_II Homoserine Kinase, type II. Homoser	89.89
cd05157	235	ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes.	89.5
cd05152	276	MPH2' Macrolide 2'-Phosphotransferase (MPH2'). MPH	89.18
TIGR00938	307	thrB_alt homoserine kinase, Neisseria type. Homose	89.04
TIGR02721	256	ycfN_thiK thiamine kinase. Members of this family	88.88
PRK10271	188	thiK thiamine kinase; Provisional	88.82
PF01633	211	Choline_kinase: Choline/ethanolamine kinase; Inter	87.92
smart00587	196	CHK ZnF_C4 abd HLH domain containing kinases domai	86.21
COG2334	331	Putative homoserine kinase type II (protein kinase	84.21
TIGR02906	313	spore_CotS spore coat protein, CotS family. Member	84.14
COG0510	269	ycfN Thiamine kinase and related kinases [Coenzyme	81.24
COG5072	488	ALK1 Serine/threonine kinase of the haspin family	81.22
PLN02236	344	choline kinase	80.35
COG4248	637	Uncharacterized protein with protein kinase and he	80.27
PLN02421	330	phosphotransferase, alcohol group as acceptor/kina	80.2

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=99.73  E-value=2.2e-17  Score=90.47  Aligned_cols=72  Identities=29%  Similarity=0.451  Sum_probs=66.7

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccCC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVD   78 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~~   78 (84)
                      ++||.|++++++.+   .+++..+..+++|++.|++|+|..   .++++|++|+|++++.++.+|+.|||+++.+...
T Consensus       126 v~GGElFS~Lrk~~---rF~e~~arFYAAeivlAleylH~~---~iiYRDLKPENiLlD~~G~iKitDFGFAK~v~~r  197 (355)
T KOG0616|consen  126 VPGGELFSYLRKSG---RFSEPHARFYAAEIVLALEYLHSL---DIIYRDLKPENLLLDQNGHIKITDFGFAKRVSGR  197 (355)
T ss_pred             cCCccHHHHHHhcC---CCCchhHHHHHHHHHHHHHHHHhc---CeeeccCChHHeeeccCCcEEEEeccceEEecCc
Confidence            36899999999877   699999999999999999999988   9999999999999999999999999999887643

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=99.72  E-value=3.8e-17  Score=94.98  Aligned_cols=73  Identities=29%  Similarity=0.519  Sum_probs=67.5

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccCCCC
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSS   80 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~~~~   80 (84)
                      ++|+|.++|++.+   .+.+.....|+++++.++.|+|..   +++|||++++|++++.++.++|.|||.++.+.+...
T Consensus       157 ~nGdll~~i~K~G---sfde~caR~YAAeIldAleylH~~---GIIHRDlKPENILLd~dmhikITDFGsAK~l~~~~~  229 (604)
T KOG0592|consen  157 PNGDLLDLIKKYG---SFDETCARFYAAEILDALEYLHSN---GIIHRDLKPENILLDKDGHIKITDFGSAKILSPSQK  229 (604)
T ss_pred             CCCcHHHHHHHhC---cchHHHHHHHHHHHHHHHHHHHhc---CceeccCChhheeEcCCCcEEEeeccccccCChhhc
Confidence            6899999999887   599999999999999999999999   999999999999999999999999999998876443

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.71  E-value=7.9e-17  Score=90.98  Aligned_cols=72  Identities=32%  Similarity=0.513  Sum_probs=65.2

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCC------CcEEEccccccee
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLN------LEASVADFGTARL   74 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~~i~~~g~~~~   74 (84)
                      |.||||..||++++   .+++.+...++.|++.|++++|..   +++|+|+++.|+++...      ..+||.|||+++.
T Consensus        91 C~gGDLs~yi~~~~---~l~e~t~r~Fm~QLA~alq~L~~~---~IiHRDLKPQNiLLs~~~~~~~~~~LKIADFGfAR~  164 (429)
T KOG0595|consen   91 CNGGDLSDYIRRRG---RLPEATARHFMQQLASALQFLHEN---NIIHRDLKPQNILLSTTARNDTSPVLKIADFGFARF  164 (429)
T ss_pred             CCCCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCCcceEEeccCCCCCCCceEEecccchhhh
Confidence            56899999999887   699999999999999999999999   99999999999999764      5689999999998


Q ss_pred             ccCC
Q 040123           75 LHVD   78 (84)
Q Consensus        75 ~~~~   78 (84)
                      +.+.
T Consensus       165 L~~~  168 (429)
T KOG0595|consen  165 LQPG  168 (429)
T ss_pred             CCch
Confidence            8753

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=99.70  E-value=5.9e-17  Score=93.28  Aligned_cols=72  Identities=35%  Similarity=0.624  Sum_probs=64.9

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      |+.|+|.+||+..... .+...++..++.||+.|+.|+++.   +++||||.++|++++.+..+||+|||+++...
T Consensus       283 m~~GsLl~yLr~~~~~-~l~~~~Ll~~a~qIaeGM~YLes~---~~IHRDLAARNiLV~~~~~vKIsDFGLAr~~~  354 (468)
T KOG0197|consen  283 MPKGSLLDYLRTREGG-LLNLPQLLDFAAQIAEGMAYLESK---NYIHRDLAARNILVDEDLVVKISDFGLARLIG  354 (468)
T ss_pred             cccCcHHHHhhhcCCC-ccchHHHHHHHHHHHHHHHHHHhC---CccchhhhhhheeeccCceEEEcccccccccC
Confidence            6789999999973332 688899999999999999999998   99999999999999999999999999999443

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.69  E-value=2.1e-16  Score=89.74  Aligned_cols=75  Identities=41%  Similarity=0.693  Sum_probs=68.0

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      |++|+|.++|...... .++|.....++.+++.|+.|+|..+.+.++|+|+++.||+++.+...|++|||+++...
T Consensus       154 m~nGsL~d~L~~~~~~-~L~W~~R~kIa~g~A~gL~yLH~~~~~~iiHrDiKssNILLD~~~~aKlsDFGLa~~~~  228 (361)
T KOG1187|consen  154 MPNGSLEDHLHGKKGE-PLDWETRLKIALGAARGLAYLHEGCPPPIIHRDIKSSNILLDEDFNAKLSDFGLAKLGP  228 (361)
T ss_pred             cCCCCHHHHhCCCCCC-CCCHHHHHHHHHHHHHHHHHHccCCCCCEecCCCCHHHeeECCCCCEEccCccCcccCC
Confidence            6789999999876544 68999999999999999999999988889999999999999999999999999996554

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.68  E-value=2.1e-16  Score=92.54  Aligned_cols=73  Identities=30%  Similarity=0.551  Sum_probs=67.4

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccCCC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDS   79 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~~~   79 (84)
                      |++|+|..+++.+.   .+.+..+..+..||+.|+.|+|+.   +++|+|++..|++++.+..+||.|||+|..+..+.
T Consensus       100 C~~~sL~el~Krrk---~ltEpEary~l~QIv~GlkYLH~~---~IiHRDLKLGNlfL~~~~~VKIgDFGLAt~le~~~  172 (592)
T KOG0575|consen  100 CHRGSLMELLKRRK---PLTEPEARYFLRQIVEGLKYLHSL---GIIHRDLKLGNLFLNENMNVKIGDFGLATQLEYDG  172 (592)
T ss_pred             cCCccHHHHHHhcC---CCCcHHHHHHHHHHHHHHHHHHhc---CceecccchhheeecCcCcEEecccceeeeecCcc
Confidence            57899999998665   799999999999999999999998   99999999999999999999999999999987553

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=99.67  E-value=4.7e-16  Score=86.78  Aligned_cols=70  Identities=27%  Similarity=0.453  Sum_probs=64.7

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +.||+|...|.+..   .+++..+..|+++++.|+.|+|+.   +++|+|++|+||+++.++.+++.|||+++...
T Consensus       107 ~~GGeLf~hL~~eg---~F~E~~arfYlaEi~lAL~~LH~~---gIiyRDlKPENILLd~~GHi~LtDFgL~k~~~  176 (357)
T KOG0598|consen  107 LNGGELFYHLQREG---RFSEDRARFYLAEIVLALGYLHSK---GIIYRDLKPENILLDEQGHIKLTDFGLCKEDL  176 (357)
T ss_pred             cCCccHHHHHHhcC---CcchhHHHHHHHHHHHHHHHHHhC---CeeeccCCHHHeeecCCCcEEEeccccchhcc
Confidence            46899999998766   699999999999999999999998   99999999999999999999999999998544

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.66  E-value=8.8e-16  Score=87.42  Aligned_cols=69  Identities=29%  Similarity=0.476  Sum_probs=63.9

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCC-CcEEEcccccceec
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLN-LEASVADFGTARLL   75 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~i~~~g~~~~~   75 (84)
                      +.||+|++++.+.+   .+.+.....++.|++.|+.|||+.   +++|+|++++|++++.+ ..+|+.|||++...
T Consensus       102 ~~gGdL~~~i~~~g---~l~E~~ar~~F~Qlisav~y~H~~---gi~HRDLK~ENilld~~~~~~Kl~DFG~s~~~  171 (370)
T KOG0583|consen  102 CSGGDLFDYIVNKG---RLKEDEARKYFRQLISAVAYCHSR---GIVHRDLKPENILLDGNEGNLKLSDFGLSAIS  171 (370)
T ss_pred             cCCccHHHHHHHcC---CCChHHHHHHHHHHHHHHHHHHhC---CEeeCCCCHHHEEecCCCCCEEEecccccccc
Confidence            35799999999854   688999999999999999999998   99999999999999998 99999999999887

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=99.65  E-value=4e-16  Score=88.55  Aligned_cols=71  Identities=31%  Similarity=0.465  Sum_probs=63.2

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCC---CcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLN---LEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~i~~~g~~~~~~~   77 (84)
                      |+||+|++++-.+.   .+.+.....++.|++.++.|+|+.   +++|||++|.|+++..+   ..+||.|||+++....
T Consensus       258 v~GGeLfd~vv~nk---~l~ed~~K~~f~Qll~avkYLH~~---GI~HRDiKPeNILl~~~~e~~llKItDFGlAK~~g~  331 (475)
T KOG0615|consen  258 VEGGELFDKVVANK---YLREDLGKLLFKQLLTAVKYLHSQ---GIIHRDIKPENILLSNDAEDCLLKITDFGLAKVSGE  331 (475)
T ss_pred             ecCccHHHHHHhcc---ccccchhHHHHHHHHHHHHHHHHc---CcccccCCcceEEeccCCcceEEEecccchhhcccc
Confidence            57999999998765   688888889999999999999999   99999999999999766   6789999999988754

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=99.64  E-value=1.2e-15  Score=85.32  Aligned_cols=72  Identities=32%  Similarity=0.505  Sum_probs=65.6

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhc-CCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccCC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHH-DCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVD   78 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~~   78 (84)
                      |.+|+|+++++..+   .+++..+..++.+++.|+.|+|. .   .++|||+++.|+++..++.+|+.|||.++.+...
T Consensus       160 MDgGSLd~~~k~~g---~i~E~~L~~ia~~VL~GL~YLh~~~---~IIHRDIKPsNlLvNskGeVKicDFGVS~~lvnS  232 (364)
T KOG0581|consen  160 MDGGSLDDILKRVG---RIPEPVLGKIARAVLRGLSYLHEER---KIIHRDIKPSNLLVNSKGEVKICDFGVSGILVNS  232 (364)
T ss_pred             cCCCCHHHHHhhcC---CCCHHHHHHHHHHHHHHHHHHhhcc---CeeeccCCHHHeeeccCCCEEeccccccHHhhhh
Confidence            67999999998765   58999999999999999999995 5   9999999999999999999999999998877654

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=99.61  E-value=5.3e-16  Score=93.60  Aligned_cols=74  Identities=38%  Similarity=0.637  Sum_probs=69.0

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccCCC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDS   79 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~~~   79 (84)
                      |+||+|+.||+++++  .+...+++.++++|+.|+.|+-..   +.+|+||.++||++..+..||++|||+++.+.+++
T Consensus       712 MENGsLDsFLR~~DG--qftviQLVgMLrGIAsGMkYLsdm---~YVHRDLAARNILVNsnLvCKVsDFGLSRvledd~  785 (996)
T KOG0196|consen  712 MENGSLDSFLRQNDG--QFTVIQLVGMLRGIASGMKYLSDM---NYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDP  785 (996)
T ss_pred             hhCCcHHHHHhhcCC--ceEeehHHHHHHHHHHHhHHHhhc---CchhhhhhhhheeeccceEEEeccccceeecccCC
Confidence            799999999999886  588899999999999999999977   99999999999999999999999999999886655

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=99.61  E-value=1.1e-15  Score=83.78  Aligned_cols=74  Identities=35%  Similarity=0.555  Sum_probs=67.1

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccCCCC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSS   80 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~~~~   80 (84)
                      |+.|.|+++|.+.-   .++++....++.|+..++.|+|..   +++|+|+++.||+++.+..++++|||++..+.+...
T Consensus       105 ~prGELFDyLts~V---tlSEK~tR~iMrqlfegVeylHa~---~IVHRDLKpENILlddn~~i~isDFGFa~~l~~Gek  178 (411)
T KOG0599|consen  105 MPRGELFDYLTSKV---TLSEKETRRIMRQLFEGVEYLHAR---NIVHRDLKPENILLDDNMNIKISDFGFACQLEPGEK  178 (411)
T ss_pred             cccchHHHHhhhhe---eecHHHHHHHHHHHHHHHHHHHHh---hhhhcccChhheeeccccceEEeccceeeccCCchh
Confidence            56799999998655   689999999999999999999988   999999999999999999999999999988776543

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.60  E-value=3.4e-15  Score=81.89  Aligned_cols=77  Identities=25%  Similarity=0.302  Sum_probs=65.6

Q ss_pred             CCCCcHHHHHhcCC-CcccCCHHHHHHHHHHHHHHHHHHhcCCCCC--eEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDD-EAIELNWTKRVSIVKSVAHALSYLHHDCTLS--VVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      |.+|||...|+... ....+++..+|.++.|++.|+.+||.. ++.  ++|+|++|.|++++.++..|+.|||+++.+..
T Consensus       102 c~~GDLsqmIk~~K~qkr~ipE~~Vwk~f~QL~~AL~~cH~~-~~r~~VmHRDIKPaNIFl~~~gvvKLGDfGL~r~l~s  180 (375)
T KOG0591|consen  102 CDAGDLSQMIKHFKKQKRLIPEKTVWKYFVQLCRALYHCHSK-IPRGTVMHRDIKPANIFLTANGVVKLGDFGLGRFLSS  180 (375)
T ss_pred             hcccCHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHhcc-ccccceeeccCcchheEEcCCCceeeccchhHhHhcc
Confidence            45799998887533 233689999999999999999999984 335  99999999999999999999999999998764


Q ss_pred             C
Q 040123           78 D   78 (84)
Q Consensus        78 ~   78 (84)
                      .
T Consensus       181 ~  181 (375)
T KOG0591|consen  181 K  181 (375)
T ss_pred             h
Confidence            3

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=99.60  E-value=2.1e-15  Score=86.35  Aligned_cols=71  Identities=31%  Similarity=0.514  Sum_probs=65.2

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccCC
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVD   78 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~~   78 (84)
                      .+|+|.+|+..+.   .+++.....+++||.+++.|||..   +++|+|++..||+++.+..+||.|||++-.+...
T Consensus       136 S~GeLYDYiSer~---~LsErEaRhfFRQIvSAVhYCHkn---rVvHRDLKLENILLD~N~NiKIADFGLSNly~~~  206 (668)
T KOG0611|consen  136 SGGELYDYISERG---SLSEREARHFFRQIVSAVHYCHKN---RVVHRDLKLENILLDQNNNIKIADFGLSNLYADK  206 (668)
T ss_pred             CCccHHHHHHHhc---cccHHHHHHHHHHHHHHHHHHhhc---cceecccchhheeecCCCCeeeeccchhhhhccc
Confidence            4799999999887   699999999999999999999988   9999999999999999999999999998766543

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=99.58  E-value=1.7e-14  Score=82.00  Aligned_cols=73  Identities=36%  Similarity=0.593  Sum_probs=64.7

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCC-eEecCCCCCcEEeCCCC-cEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLS-VVHRDISSNNILLDLNL-EASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~-~~~i~~~g~~~~~~~   77 (84)
                      |++|+|..++... ....++......++.+++.|+.|+|+.   . ++|+|+++.|++++.+. .+||.|||+++....
T Consensus       122 ~~~GsL~~~l~~~-~~~~l~~~~~l~~aldiArGm~YLH~~---~~iIHrDLK~~NiLv~~~~~~~KI~DFGlsr~~~~  196 (362)
T KOG0192|consen  122 MPGGSLSVLLHKK-RKRKLPLKVRLRIALDIARGMEYLHSE---GPIIHRDLKSDNILVDLKGKTLKIADFGLSREKVI  196 (362)
T ss_pred             CCCCcHHHHHhhc-ccCCCCHHHHHHHHHHHHHHHHHHhcC---CCeeecccChhhEEEcCCCCEEEECCCccceeecc
Confidence            6799999999874 122689999999999999999999999   7 99999999999999997 999999999987653

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.57  E-value=2.6e-14  Score=79.72  Aligned_cols=71  Identities=34%  Similarity=0.465  Sum_probs=64.9

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCC-CCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL-NLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~i~~~g~~~~~~   76 (84)
                      +++|+|.+++.+.++  .+++..+..+..|++.|+.|+|+.   +++|+|+++.|++++. +..+|+.|||.+....
T Consensus        98 ~~~GsL~~~~~~~g~--~l~E~~v~~ytr~iL~GL~ylHs~---g~vH~DiK~~NiLl~~~~~~~KlaDFG~a~~~~  169 (313)
T KOG0198|consen   98 APGGSLSDLIKRYGG--KLPEPLVRRYTRQILEGLAYLHSK---GIVHCDIKPANILLDPSNGDVKLADFGLAKKLE  169 (313)
T ss_pred             cCCCcHHHHHHHcCC--CCCHHHHHHHHHHHHHHHHHHHhC---CEeccCcccceEEEeCCCCeEEeccCccccccc
Confidence            468999999998765  589999999999999999999988   9999999999999999 6899999999887665

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=99.57  E-value=6.4e-15  Score=84.90  Aligned_cols=76  Identities=22%  Similarity=0.304  Sum_probs=68.7

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccCCCC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSS   80 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~~~~   80 (84)
                      |.||||.-+|.+.+++ -+++.....|+++|++|+.++|..   .++++|++|.||+++..+.++|+|+|+|..+.....
T Consensus       267 MNGGDLkfHiyn~g~~-gF~e~ra~FYAAEi~cGLehlH~~---~iVYRDLKPeNILLDd~GhvRISDLGLAvei~~g~~  342 (591)
T KOG0986|consen  267 MNGGDLKFHIYNHGNP-GFDEQRARFYAAEIICGLEHLHRR---RIVYRDLKPENILLDDHGHVRISDLGLAVEIPEGKP  342 (591)
T ss_pred             ecCCceeEEeeccCCC-CCchHHHHHHHHHHHhhHHHHHhc---ceeeccCChhheeeccCCCeEeeccceEEecCCCCc
Confidence            6799999999988764 589999999999999999999999   999999999999999999999999999987765443

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=99.57  E-value=1.2e-14  Score=80.32  Aligned_cols=73  Identities=30%  Similarity=0.521  Sum_probs=64.7

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCC---CCcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL---NLEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~i~~~g~~~~~~~   77 (84)
                      |+||+|++.|..++.. .+.+..+..+..||+.++.|+|+.   ++.|+|++++|++...   +...|+.|||+++....
T Consensus       141 meGGeLfsriq~~g~~-afTErea~eI~~qI~~Av~~lH~~---nIAHRDlKpENLLyt~t~~na~lKLtDfGFAK~t~~  216 (400)
T KOG0604|consen  141 MEGGELFSRIQDRGDQ-AFTEREASEIMKQIGLAVRYLHSM---NIAHRDLKPENLLYTTTSPNAPLKLTDFGFAKETQE  216 (400)
T ss_pred             ccchHHHHHHHHcccc-cchHHHHHHHHHHHHHHHHHHHhc---chhhccCChhheeeecCCCCcceEecccccccccCC
Confidence            6899999999887643 699999999999999999999988   9999999999999954   46789999999987653

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.56  E-value=9.6e-15  Score=86.97  Aligned_cols=71  Identities=30%  Similarity=0.460  Sum_probs=64.6

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      +++|.|++++...+   .+++.....++.|++.|+.|||..   ++.|+|++++|++++.+..+||.|||+|..-.+
T Consensus        94 v~gGELFdylv~kG---~l~e~eaa~ff~QIi~gv~yCH~~---~icHRDLKpENlLLd~~~nIKIADFGMAsLe~~  164 (786)
T KOG0588|consen   94 VPGGELFDYLVRKG---PLPEREAAHFFRQILDGVSYCHAF---NICHRDLKPENLLLDVKNNIKIADFGMASLEVP  164 (786)
T ss_pred             cCCchhHHHHHhhC---CCCCHHHHHHHHHHHHHHHHHhhh---cceeccCCchhhhhhcccCEeeeccceeecccC
Confidence            57899999999877   689999999999999999999988   999999999999999888899999999876544

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.54  E-value=6.1e-14  Score=81.39  Aligned_cols=59  Identities=34%  Similarity=0.500  Sum_probs=55.8

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccCCC
Q 040123           18 ELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDS   79 (84)
Q Consensus        18 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~~~   79 (84)
                      .+++.++..++.|++.|+.|||..   +++|+|++..|++++.++.+||.|||+|+++....
T Consensus       214 kft~~qIKc~mkQLl~Gl~~cH~~---gvlHRDIK~SNiLidn~G~LKiaDFGLAr~y~~~~  272 (560)
T KOG0600|consen  214 KFTEPQIKCYMKQLLEGLEYCHSR---GVLHRDIKGSNILIDNNGVLKIADFGLARFYTPSG  272 (560)
T ss_pred             ccChHHHHHHHHHHHHHHHHHhhc---CeeeccccccceEEcCCCCEEeccccceeeccCCC
Confidence            689999999999999999999999   99999999999999999999999999999887654

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.53  E-value=2.1e-14  Score=83.46  Aligned_cols=70  Identities=29%  Similarity=0.432  Sum_probs=63.8

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      |.||+|.+||++..+  .++..+...++.+.+.|+.|+|..   +++|||+-++|++++.+..+||+|||+++.-
T Consensus       243 ~~gGsL~~~L~k~~~--~v~~~ek~~~~~~AA~Gl~YLh~k---~~IHRDIAARNcL~~~~~~vKISDFGLs~~~  312 (474)
T KOG0194|consen  243 CNGGSLDDYLKKNKK--SLPTLEKLRFCYDAARGLEYLHSK---NCIHRDIAARNCLYSKKGVVKISDFGLSRAG  312 (474)
T ss_pred             cCCCcHHHHHHhCCC--CCCHHHHHHHHHHHHhHHHHHHHC---CCcchhHhHHHheecCCCeEEeCccccccCC
Confidence            579999999998764  588899999999999999999988   9999999999999999888999999997653

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=99.53  E-value=6.9e-14  Score=77.79  Aligned_cols=70  Identities=24%  Similarity=0.349  Sum_probs=59.2

Q ss_pred             CcHHHHHhcCCCc-ccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            4 GSLFCVLRDDDEA-IELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         4 g~L~~~l~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      -||..++...... ..++......++.|++.|+.|||+.   +++|+|++|.|+++++++.+|++|||+++...
T Consensus       101 ~DL~~ymd~~~~~~~g~~~~~ik~~m~Qll~gl~~~H~~---~IlHRDLKPQNlLi~~~G~lKlaDFGlAra~~  171 (323)
T KOG0594|consen  101 RDLKKYMDSLPKKPQGLPPRLIKSFMRQLLRGLAFLHSH---GILHRDLKPQNLLISSSGVLKLADFGLARAFS  171 (323)
T ss_pred             ccHHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHhC---CeecccCCcceEEECCCCcEeeeccchHHHhc
Confidence            3677777765421 2366678899999999999999998   99999999999999999999999999998654

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.52  E-value=6.8e-14  Score=80.80  Aligned_cols=71  Identities=25%  Similarity=0.428  Sum_probs=62.1

Q ss_pred             cHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccCCCC
Q 040123            5 SLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSS   80 (84)
Q Consensus         5 ~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~~~~   80 (84)
                      .|...++.+.  ..+++..+..++.|+++|+.|+|..   ++.|||++++|+++..+..+||.|||+|+.+...+.
T Consensus        95 NLYqLmK~R~--r~fse~~irnim~QilqGL~hiHk~---GfFHRDlKPENiLi~~~~~iKiaDFGLARev~SkpP  165 (538)
T KOG0661|consen   95 NLYQLMKDRN--RLFSESDIRNIMYQILQGLAHIHKH---GFFHRDLKPENILISGNDVIKIADFGLAREVRSKPP  165 (538)
T ss_pred             hHHHHHhhcC--CcCCHHHHHHHHHHHHHHHHHHHhc---CcccccCChhheEecccceeEecccccccccccCCC
Confidence            4566676653  3799999999999999999999988   999999999999999888999999999998765544

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.52  E-value=8.5e-14  Score=81.34  Aligned_cols=74  Identities=31%  Similarity=0.531  Sum_probs=66.2

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccCCCC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSS   80 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~~~~   80 (84)
                      |+||+|.+.+...    .+.+.+...++.+++.|+.|+|..   +++|+|++..|+++..++.+|+.|||++..+.....
T Consensus       352 m~ggsLTDvVt~~----~~~E~qIA~Icre~l~aL~fLH~~---gIiHrDIKSDnILL~~~g~vKltDFGFcaqi~~~~~  424 (550)
T KOG0578|consen  352 MEGGSLTDVVTKT----RMTEGQIAAICREILQGLKFLHAR---GIIHRDIKSDNILLTMDGSVKLTDFGFCAQISEEQS  424 (550)
T ss_pred             cCCCchhhhhhcc----cccHHHHHHHHHHHHHHHHHHHhc---ceeeeccccceeEeccCCcEEEeeeeeeeccccccC
Confidence            6789988887654    488999999999999999999999   999999999999999999999999999988876654


Q ss_pred             C
Q 040123           81 N   81 (84)
Q Consensus        81 ~   81 (84)
                      +
T Consensus       425 K  425 (550)
T KOG0578|consen  425 K  425 (550)
T ss_pred             c
Confidence            4

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=99.51  E-value=3.1e-14  Score=84.07  Aligned_cols=69  Identities=32%  Similarity=0.644  Sum_probs=61.6

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEccccccee
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARL   74 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~   74 (84)
                      |+|.+|..+|.....  .+...+...++.|+++|+.|+|.+   +|+|+|++..||+++.+..++|.|||++..
T Consensus       469 CeGsSLY~hlHv~et--kfdm~~~idIAqQiaqGM~YLHAK---~IIHrDLKSnNIFl~~~~kVkIgDFGLatv  537 (678)
T KOG0193|consen  469 CEGSSLYTHLHVQET--KFDMNTTIDIAQQIAQGMDYLHAK---NIIHRDLKSNNIFLHEDLKVKIGDFGLATV  537 (678)
T ss_pred             ccCchhhhhccchhh--hhhHHHHHHHHHHHHHhhhhhhhh---hhhhhhccccceEEccCCcEEEecccceee
Confidence            567788888876543  688889999999999999999998   999999999999999999999999998764

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=99.50  E-value=1.2e-13  Score=80.48  Aligned_cols=69  Identities=25%  Similarity=0.389  Sum_probs=64.0

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      ++|||+...|.+.+   .+++.....|+++++.|+.-+|..   +++|+|++|.|++++..+.+|++|||++.-+
T Consensus       223 lPGGD~mTLL~~~~---~L~e~~arfYiaE~vlAI~~iH~~---gyIHRDIKPdNlLiD~~GHiKLSDFGLs~gl  291 (550)
T KOG0605|consen  223 LPGGDMMTLLMRKD---TLTEDWARFYIAETVLAIESIHQL---GYIHRDIKPDNLLIDAKGHIKLSDFGLSTGL  291 (550)
T ss_pred             cCCccHHHHHHhcC---cCchHHHHHHHHHHHHHHHHHHHc---CcccccCChhheeecCCCCEeeccccccchh
Confidence            46999999998877   799999999999999999999988   9999999999999999999999999998543

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=99.50  E-value=1.7e-13  Score=77.75  Aligned_cols=69  Identities=26%  Similarity=0.430  Sum_probs=62.5

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      +++|+|.+++.+..   .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++..+
T Consensus        83 ~~gg~L~~~l~~~~---~l~~~~~~~~~~qi~~aL~~lH~~---givHrDlKp~NILi~~~~~vkL~DFGla~~~  151 (363)
T cd05628          83 LPGGDMMTLLMKKD---TLTEEETQFYIAETVLAIDSIHQL---GFIHRDIKPDNLLLDSKGHVKLSDFGLCTGL  151 (363)
T ss_pred             CCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CeEecCCCHHHeEECCCCCEEEeeccCcccc
Confidence            46899999998654   588999999999999999999988   9999999999999999999999999998754

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.48  E-value=5.3e-14  Score=80.80  Aligned_cols=75  Identities=25%  Similarity=0.491  Sum_probs=67.9

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccCCC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDS   79 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~~~   79 (84)
                      ++||++.+.|.+..+ ..+++..++.|+.|++.++.|+|..   .++|+|++..|+++.+...+++.|||+++.+....
T Consensus        86 ~eGg~l~~~i~~~k~-~~f~E~~i~~~~~Q~~~av~ylH~~---~iLHRDlK~~Nifltk~~~VkLgDfGlaK~l~~~~  160 (426)
T KOG0589|consen   86 CEGGDLAQLIKEQKG-VLFPEERILKWFVQILLAVNYLHEN---RVLHRDLKCANIFLTKDKKVKLGDFGLAKILNPED  160 (426)
T ss_pred             cCCCCHHHHHHHHhh-ccccHHHHHHHHHHHHHHHHHHHhh---hhhcccchhhhhhccccCceeecchhhhhhcCCch
Confidence            579999999987653 3689999999999999999999988   99999999999999999999999999999887654

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=99.48  E-value=3.9e-13  Score=75.42  Aligned_cols=69  Identities=29%  Similarity=0.382  Sum_probs=61.8

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      +++|+|.+++.+..   .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++..+
T Consensus        87 ~~~g~L~~~l~~~~---~~~~~~~~~~~~qi~~~l~~lH~~---~ivHrDlkp~Nili~~~~~~kl~DfG~~~~~  155 (332)
T cd05614          87 VSGGEMFTHLYQRD---NFSEDEVRFYSGEIILALEHLHKL---GIVYRDIKLENILLDSEGHVVLTDFGLSKEF  155 (332)
T ss_pred             CCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CcEecCCCHHHeEECCCCCEEEeeCcCCccc
Confidence            45789999987654   588899999999999999999988   9999999999999999999999999988754

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.47  E-value=1.2e-13  Score=85.67  Aligned_cols=71  Identities=35%  Similarity=0.549  Sum_probs=64.3

Q ss_pred             CCCCcHHHHHhcCCC----cccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEccccccee
Q 040123            1 MERGSLFCVLRDDDE----AIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARL   74 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~   74 (84)
                      |++|||.+||++...    ...+....+..++.+++.|+.|++.+   +++|+|+.++|++++.....||.|||+++-
T Consensus       777 M~gGDL~sflr~~r~~~~~~~~L~~~dLl~~a~dvA~G~~YLe~~---~fvHRDLAaRNCLL~~~r~VKIaDFGlArD  851 (1025)
T KOG1095|consen  777 MEGGDLLSFLRESRPAPFQPSNLSMRDLLAFALDVAKGMNYLESK---HFVHRDLAARNCLLDERRVVKIADFGLARD  851 (1025)
T ss_pred             cccCcHHHHHHhcccccCCCCCCCHHHHHHHHHHHhhhhHHHHhC---CCcCcchhhhheeecccCcEEEcccchhHh
Confidence            789999999998621    23678899999999999999999998   999999999999999999999999999983

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=99.47  E-value=6.2e-13  Score=74.48  Aligned_cols=69  Identities=28%  Similarity=0.390  Sum_probs=61.4

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      +++|+|..++....   .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||+++..
T Consensus        77 ~~~~~L~~~l~~~~---~~~~~~~~~~~~qi~~~L~~lH~~---~ivHrDlkp~NIll~~~~~~kl~DfG~a~~~  145 (323)
T cd05571          77 ANGGELFFHLSRER---VFSEDRARFYGAEIVSALGYLHSC---DVVYRDLKLENLMLDKDGHIKITDFGLCKEG  145 (323)
T ss_pred             CCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHhC---CeEeCCCCHHHEEECCCCCEEEeeCCCCccc
Confidence            45789998887654   588899999999999999999988   9999999999999999999999999988653

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=99.47  E-value=4.4e-13  Score=73.03  Aligned_cols=70  Identities=29%  Similarity=0.426  Sum_probs=61.3

Q ss_pred             CcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccCC
Q 040123            4 GSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVD   78 (84)
Q Consensus         4 g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~~   78 (84)
                      .||...|+...-  .+...+...|+.+++.|+.|||..   .++|+|+++.|+++..++.+|+.|||+++.+...
T Consensus        85 tdLe~vIkd~~i--~l~pa~iK~y~~m~LkGl~y~H~~---~IlHRDlKPnNLLis~~g~lKiADFGLAr~f~~p  154 (318)
T KOG0659|consen   85 TDLEVVIKDKNI--ILSPADIKSYMLMTLKGLAYCHSK---WILHRDLKPNNLLISSDGQLKIADFGLARFFGSP  154 (318)
T ss_pred             ccHHHHhccccc--ccCHHHHHHHHHHHHHHHHHHHhh---hhhcccCCccceEEcCCCcEEeecccchhccCCC
Confidence            367777775443  688899999999999999999998   9999999999999999999999999999987543

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=99.47  E-value=7.3e-13  Score=73.90  Aligned_cols=71  Identities=27%  Similarity=0.510  Sum_probs=62.6

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++|+|.+++.+...  .+++.....++.|++.++.|+|+.   +++|+|+++.|++++.+..+++.|||++..+.
T Consensus        90 ~~~g~l~~~l~~~~~--~~~~~~~~~~~~qi~~~L~~LH~~---~iiH~dlkp~Nill~~~~~~kl~DfG~a~~~~  160 (316)
T cd05108          90 MPFGCLLDYVREHKD--NIGSQYLLNWCVQIAKGMNYLEER---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLG  160 (316)
T ss_pred             CCCCCHHHHHHhccc--cCCHHHHHHHHHHHHHHHHHHHhc---CeeccccchhheEecCCCcEEEcccccccccc
Confidence            357899999986543  477888889999999999999988   99999999999999999999999999987654

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=99.46  E-value=2.5e-13  Score=82.13  Aligned_cols=72  Identities=25%  Similarity=0.372  Sum_probs=64.7

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEccccccee
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARL   74 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~   74 (84)
                      |.||.|.+|+.++... .|.+..++.++.+++.|+.+||.. +++++|||++.+|+++..+..+|+.|||-+..
T Consensus       124 C~gg~Lvd~mn~Rlq~-~lte~eVLkIf~dv~~AVa~mH~~-~pPiIHRDLKiENvLls~~g~~KLCDFGSatt  195 (738)
T KOG1989|consen  124 CKGGSLVDFMNTRLQT-RLTEDEVLKIFYDVCEAVAAMHYL-KPPIIHRDLKIENVLLSADGNYKLCDFGSATT  195 (738)
T ss_pred             ccCCcHHHHHHHHHhc-cCChHHHHHHHHHHHHHHHHHhcC-CCccchhhhhhhheEEcCCCCEEeCccccccc
Confidence            5689999999977654 489999999999999999999987 77899999999999999999999999997654

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=99.46  E-value=9.3e-13  Score=73.88  Aligned_cols=71  Identities=27%  Similarity=0.411  Sum_probs=63.2

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++|+|.+++.+...  .+++.....++.|++.++.|+|..   +++|+|+++.|++++....+++.|||++..+.
T Consensus        83 ~~~~~L~~~l~~~~~--~l~~~~~~~~~~qi~~aL~~lH~~---~i~H~Dlkp~NIll~~~~~~kL~Dfg~a~~~~  153 (330)
T cd05601          83 QPGGDLLSLLNRYED--QFDEDMAQFYLAELVLAIHSVHQM---GYVHRDIKPENVLIDRTGHIKLADFGSAARLT  153 (330)
T ss_pred             CCCCCHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHC---CeEcccCchHheEECCCCCEEeccCCCCeECC
Confidence            358999999987533  588899999999999999999988   99999999999999999999999999987654

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=99.46  E-value=8.9e-13  Score=73.73  Aligned_cols=69  Identities=22%  Similarity=0.434  Sum_probs=61.7

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      +++|+|..++....   .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++...
T Consensus        78 ~~gg~L~~~~~~~~---~~~~~~~~~~~~qi~~al~~LH~~---~ivH~dlkp~Nill~~~~~~kL~Dfg~a~~~  146 (316)
T cd05592          78 LNGGDLMFHIQSSG---RFDEARARFYAAEIICGLQFLHKK---GIIYRDLKLDNVLLDKDGHIKIADFGMCKEN  146 (316)
T ss_pred             CCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CEEeCCCCHHHeEECCCCCEEEccCcCCeEC
Confidence            45889998887654   588888999999999999999988   9999999999999999999999999998754

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=99.46  E-value=1.6e-12  Score=72.84  Aligned_cols=69  Identities=28%  Similarity=0.410  Sum_probs=60.7

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhc-CCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHH-DCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      +++|+|..++....   .+++.....++.|++.++.|+|+ .   +++|+|+++.|++++.+..+++.|||++...
T Consensus        77 ~~~~~L~~~l~~~~---~l~~~~~~~~~~qi~~aL~~lH~~~---~ivHrDikp~NIll~~~~~~kL~Dfg~~~~~  146 (325)
T cd05594          77 ANGGELFFHLSRER---VFSEDRARFYGAEIVSALDYLHSEK---NVVYRDLKLENLMLDKDGHIKITDFGLCKEG  146 (325)
T ss_pred             CCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhcC---CEEecCCCCCeEEECCCCCEEEecCCCCeec
Confidence            45789988887654   58899999999999999999996 6   8999999999999999999999999987653

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=99.46  E-value=1.3e-12  Score=71.70  Aligned_cols=71  Identities=30%  Similarity=0.536  Sum_probs=62.4

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++|+|.+++....+  .+++.....++.|++.++.|+|+.   +++|+|+++.|+++.....+++.|||++..+.
T Consensus        90 ~~~g~l~~~l~~~~~--~~~~~~~~~~~~qi~~~L~~lH~~---~iiH~dlkp~Nil~~~~~~~kL~dfG~~~~~~  160 (279)
T cd05109          90 MPYGCLLDYVRENKD--RIGSQDLLNWCVQIAKGMSYLEEV---RLVHRDLAARNVLVKSPNHVKITDFGLARLLD  160 (279)
T ss_pred             CCCCCHHHHHhhccC--CCCHHHHHHHHHHHHHHHHHHHHC---CeeccccccceEEEcCCCcEEECCCCceeecc
Confidence            357899999876443  588889999999999999999998   99999999999999888889999999987654

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.46  E-value=3e-13  Score=79.98  Aligned_cols=75  Identities=27%  Similarity=0.434  Sum_probs=66.4

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCC-CcEEEcccccceeccCCC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLN-LEASVADFGTARLLHVDS   79 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~i~~~g~~~~~~~~~   79 (84)
                      |+.|+|..|++++.   .+..+.+..|++||+.|+.|+|+. .++++|+|++-.||++..+ +.+||+|+|+|..+....
T Consensus       125 ~TSGtLr~Y~kk~~---~vn~kaik~W~RQILkGL~yLHs~-~PPIIHRDLKCDNIFinG~~G~VKIGDLGLAtl~r~s~  200 (632)
T KOG0584|consen  125 FTSGTLREYRKKHR---RVNIKAIKSWCRQILKGLVYLHSQ-DPPIIHRDLKCDNIFVNGNLGEVKIGDLGLATLLRKSH  200 (632)
T ss_pred             ccCCcHHHHHHHhc---cCCHHHHHHHHHHHHHHhhhhhcC-CCCccccccccceEEEcCCcCceeecchhHHHHhhccc
Confidence            56899999999887   588899999999999999999998 8899999999999999754 789999999998765443

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=99.46  E-value=7e-13  Score=74.54  Aligned_cols=71  Identities=28%  Similarity=0.422  Sum_probs=62.6

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++|+|..++.+...  .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++..+.
T Consensus        83 ~~gg~L~~~l~~~~~--~l~~~~~~~~~~qi~~~L~~lH~~---~iiHrDlkp~Nill~~~~~~kl~DfG~a~~~~  153 (331)
T cd05624          83 YVGGDLLTLLSKFED--RLPEDMARFYIAEMVLAIHSIHQL---HYVHRDIKPDNVLLDMNGHIRLADFGSCLKMN  153 (331)
T ss_pred             CCCCcHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCchHHEEEcCCCCEEEEeccceeecc
Confidence            468999999986433  578888899999999999999988   99999999999999999999999999987654

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=99.45  E-value=8.7e-13  Score=74.03  Aligned_cols=69  Identities=29%  Similarity=0.443  Sum_probs=61.3

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      +++|+|..++.+..   .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++...
T Consensus        78 ~~~g~L~~~l~~~~---~~~~~~~~~~~~qil~al~~LH~~---~ivHrDlkp~Nili~~~~~~kl~Dfg~a~~~  146 (330)
T cd05586          78 MSGGELFWHLQKEG---RFSEDRAKFYIAELVLALEHLHKY---DIVYRDLKPENILLDATGHIALCDFGLSKAN  146 (330)
T ss_pred             CCCChHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCCHHHeEECCCCCEEEecCCcCcCC
Confidence            35789988887654   588999999999999999999988   9999999999999999999999999987653

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=99.45  E-value=9.7e-13  Score=73.68  Aligned_cols=69  Identities=29%  Similarity=0.443  Sum_probs=61.3

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      +++|+|..++....   .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++...
T Consensus        78 ~~~g~L~~~l~~~~---~~~~~~~~~~~~qi~~~l~~lH~~---givH~dikp~NIll~~~~~~kl~Dfg~~~~~  146 (323)
T cd05575          78 VNGGELFFHLQRER---SFPEPRARFYAAEIASALGYLHSL---NIIYRDLKPENILLDSQGHVVLTDFGLCKEG  146 (323)
T ss_pred             CCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCCHHHeEECCCCcEEEeccCCCccc
Confidence            45789998887654   588888899999999999999988   9999999999999999999999999987653

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=99.45  E-value=8.6e-13  Score=75.40  Aligned_cols=69  Identities=23%  Similarity=0.379  Sum_probs=61.4

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      +++|+|.+++.+..   .+++.....++.|++.++.|+|..   +++|+|+++.|++++....+++.|||++..+
T Consensus        83 ~~gg~L~~~l~~~~---~~~e~~~~~~~~qi~~aL~~LH~~---givHrDlKp~Nili~~~~~~kL~DFGl~~~~  151 (381)
T cd05626          83 IPGGDMMSLLIRME---VFPEVLARFYIAELTLAIESVHKM---GFIHRDIKPDNILIDLDGHIKLTDFGLCTGF  151 (381)
T ss_pred             CCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CeeecCCcHHHEEECCCCCEEEeeCcCCccc
Confidence            46899999987654   588888889999999999999988   9999999999999999999999999987543

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=99.45  E-value=9.4e-13  Score=75.14  Aligned_cols=71  Identities=23%  Similarity=0.257  Sum_probs=62.9

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      |+||+|...+++..+ ..+++..+..|+++++.|++|+|..   +++++|++++||++..++.+.++||-++...
T Consensus       159 CpGGdL~~LrqkQp~-~~fse~~aRFYaAEvl~ALEYLHml---GivYRDLKPENILvredGHIMLsDFDLS~~~  229 (459)
T KOG0610|consen  159 CPGGDLHSLRQKQPG-KRFSESAARFYAAEVLLALEYLHML---GIVYRDLKPENILVREDGHIMLSDFDLSLRC  229 (459)
T ss_pred             CCCccHHHHHhhCCC-CccchhhHHHHHHHHHHHHHHHHhh---ceeeccCCcceeEEecCCcEEeeeccccccC
Confidence            679999988776543 4799999999999999999999988   9999999999999999999999999876543

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=99.45  E-value=8e-13  Score=75.47  Aligned_cols=68  Identities=22%  Similarity=0.326  Sum_probs=60.9

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEccccccee
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARL   74 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~   74 (84)
                      |++|+|.+++.+..   .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++..
T Consensus        83 ~~gg~L~~~l~~~~---~~~e~~~~~~~~qi~~al~~lH~~---~ivHrDlKp~NILl~~~g~~kL~DFGla~~  150 (382)
T cd05625          83 IPGGDMMSLLIRMG---IFPEDLARFYIAELTCAVESVHKM---GFIHRDIKPDNILIDRDGHIKLTDFGLCTG  150 (382)
T ss_pred             CCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCCEEEeECCCCcc
Confidence            46889999987654   578888899999999999999988   999999999999999999999999998754

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=99.45  E-value=1.1e-12  Score=73.71  Aligned_cols=71  Identities=30%  Similarity=0.385  Sum_probs=62.4

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++|+|.+++.+...  .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++..+.
T Consensus        83 ~~g~~L~~~l~~~~~--~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~  153 (331)
T cd05597          83 YVGGDLLTLLSKFED--RLPEDMARFYLAEMVLAIDSVHQL---GYVHRDIKPDNVLLDKNGHIRLADFGSCLRLL  153 (331)
T ss_pred             CCCCcHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhC---CeEECCCCHHHEEECCCCCEEEEECCceeecC
Confidence            458999999976433  578889999999999999999988   99999999999999999999999999886653

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.44  E-value=7.5e-13  Score=75.08  Aligned_cols=70  Identities=24%  Similarity=0.402  Sum_probs=62.8

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++|+|.+++.+..   .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++..+.
T Consensus        83 ~~~g~L~~~l~~~~---~l~~~~~~~~~~qi~~aL~~lH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~  152 (364)
T cd05599          83 LPGGDMMTLLMKKD---TFTEEETRFYIAETILAIDSIHKL---GYIHRDIKPDNLLLDAKGHIKLSDFGLCTGLK  152 (364)
T ss_pred             CCCcHHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCCHHHeEECCCCCEEEeecccceecc
Confidence            45899999987654   588999999999999999999988   99999999999999999999999999987653

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=99.44  E-value=8.2e-13  Score=75.36  Aligned_cols=69  Identities=28%  Similarity=0.398  Sum_probs=61.5

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++|+|.+++...    .+++.....++.|++.++.|+|..   +++|+|+++.|++++....+++.|||++..+.
T Consensus       125 ~~gg~L~~~l~~~----~~~~~~~~~~~~qil~aL~~LH~~---~IvHrDLKp~NILl~~~~~~kL~DFG~a~~~~  193 (370)
T cd05621         125 MPGGDLVNLMSNY----DVPEKWAKFYTAEVVLALDAIHSM---GLIHRDVKPDNMLLDKHGHLKLADFGTCMKMD  193 (370)
T ss_pred             CCCCcHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHEEECCCCCEEEEecccceecc
Confidence            4689999998754    377888889999999999999988   99999999999999999999999999987654

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.44  E-value=9.1e-13  Score=75.13  Aligned_cols=69  Identities=25%  Similarity=0.360  Sum_probs=61.5

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      +++|+|.+++....   .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++..+
T Consensus        83 ~~gg~L~~~l~~~~---~~~~~~~~~~~~ql~~aL~~LH~~---givHrDlkp~NIll~~~~~~kl~DfGla~~~  151 (377)
T cd05629          83 LPGGDLMTMLIKYD---TFSEDVTRFYMAECVLAIEAVHKL---GFIHRDIKPDNILIDRGGHIKLSDFGLSTGF  151 (377)
T ss_pred             CCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHEEECCCCCEEEeeccccccc
Confidence            46899999987654   588888889999999999999988   9999999999999999999999999998643

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.44  E-value=6e-13  Score=79.88  Aligned_cols=68  Identities=22%  Similarity=0.340  Sum_probs=62.3

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEccccccee
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARL   74 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~   74 (84)
                      ++|||+.+.|-+.+   .|++.....|++++.+++.+.|.-   +++|+|+++.||+++.++.+|+.|||++.-
T Consensus       711 IPGGDmMSLLIrmg---IFeE~LARFYIAEltcAiesVHkm---GFIHRDiKPDNILIDrdGHIKLTDFGLCTG  778 (1034)
T KOG0608|consen  711 IPGGDMMSLLIRMG---IFEEDLARFYIAELTCAIESVHKM---GFIHRDIKPDNILIDRDGHIKLTDFGLCTG  778 (1034)
T ss_pred             cCCccHHHHHHHhc---cCHHHHHHHHHHHHHHHHHHHHhc---cceecccCccceEEccCCceeeeecccccc
Confidence            46899999888766   799999999999999999999976   999999999999999999999999998753

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=99.44  E-value=2.1e-12  Score=70.95  Aligned_cols=71  Identities=31%  Similarity=0.490  Sum_probs=62.6

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++|+|.+++.....  .+++.....++.|++.++.|+|..   +++|+++++.|++++.+..+++.|||.++.+.
T Consensus        90 ~~~gsL~~~l~~~~~--~~~~~~~~~i~~qi~~~l~~lH~~---~iiH~dlkp~nili~~~~~~kl~Dfg~~~~~~  160 (279)
T cd05111          90 SPLGSLLDHVRQHRD--SLDPQRLLNWCVQIAKGMYYLEEH---RMVHRNLAARNILLKSDSIVQIADFGVADLLY  160 (279)
T ss_pred             CCCCcHHHHHHhccc--CCCHHHHHHHHHHHHHHHHHHHHC---CEeccccCcceEEEcCCCcEEEcCCccceecc
Confidence            357899999976443  578899999999999999999988   99999999999999999999999999987654

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=99.44  E-value=1.2e-12  Score=73.03  Aligned_cols=69  Identities=29%  Similarity=0.470  Sum_probs=61.6

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      +++|+|.+++....   .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++...
T Consensus        75 ~~~g~L~~~l~~~~---~~~~~~~~~~~~qi~~~l~~lH~~---~i~HrDlkp~Nili~~~~~~kl~Dfg~~~~~  143 (312)
T cd05585          75 INGGELFHHLQREG---RFDLSRARFYTAELLCALENLHKF---NVIYRDLKPENILLDYQGHIALCDFGLCKLN  143 (312)
T ss_pred             CCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CeEeCCCCHHHeEECCCCcEEEEECcccccC
Confidence            46889999987654   588888899999999999999988   9999999999999999999999999988753

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=99.44  E-value=1.2e-12  Score=73.35  Aligned_cols=68  Identities=24%  Similarity=0.432  Sum_probs=60.9

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEccccccee
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARL   74 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~   74 (84)
                      +++|+|..++....   .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++..
T Consensus        83 ~~~g~L~~~~~~~~---~~~~~~~~~~~~qi~~al~~lH~~---~ivH~dlkp~Nill~~~~~~kL~Dfg~~~~  150 (324)
T cd05587          83 VNGGDLMYHIQQVG---KFKEPHAVFYAAEIAIGLFFLHSK---GIIYRDLKLDNVMLDAEGHIKIADFGMCKE  150 (324)
T ss_pred             CCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHeEEcCCCCEEEeecCccee
Confidence            45789999887654   578889999999999999999988   999999999999999999999999998764

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=99.44  E-value=7.4e-13  Score=75.12  Aligned_cols=69  Identities=26%  Similarity=0.427  Sum_probs=62.1

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      +++|+|.+++.+..   .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++..+
T Consensus        83 ~~gg~L~~~l~~~~---~l~~~~~~~~~~qi~~~L~~lH~~---givHrDLkp~NIli~~~~~vkL~DfG~~~~~  151 (360)
T cd05627          83 LPGGDMMTLLMKKD---TLSEEATQFYIAETVLAIDAIHQL---GFIHRDIKPDNLLLDAKGHVKLSDFGLCTGL  151 (360)
T ss_pred             CCCccHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeEccCCCHHHEEECCCCCEEEeeccCCccc
Confidence            46889999987654   588899999999999999999988   9999999999999999999999999988654

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=99.44  E-value=1.1e-12  Score=74.08  Aligned_cols=70  Identities=24%  Similarity=0.402  Sum_probs=62.7

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++|+|.+++....   .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++..+.
T Consensus       113 ~~~g~L~~~i~~~~---~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDLkp~NILl~~~~~ikL~DFG~a~~~~  182 (340)
T PTZ00426        113 VIGGEFFTFLRRNK---RFPNDVGCFYAAQIVLIFEYLQSL---NIVYRDLKPENLLLDKDGFIKMTDFGFAKVVD  182 (340)
T ss_pred             CCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeEccCCCHHHEEECCCCCEEEecCCCCeecC
Confidence            45889999998654   588889999999999999999988   99999999999999999999999999987654

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=99.43  E-value=1.4e-12  Score=73.03  Aligned_cols=69  Identities=23%  Similarity=0.427  Sum_probs=61.6

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      +++|+|..++.+..   .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++...
T Consensus        78 ~~~g~L~~~i~~~~---~l~~~~~~~~~~ql~~~L~~lH~~---~ivH~dlkp~NIli~~~~~~kL~DfG~~~~~  146 (320)
T cd05590          78 VNGGDLMFHIQKSR---RFDEARARFYAAEITSALMFLHDK---GIIYRDLKLDNVLLDHEGHCKLADFGMCKEG  146 (320)
T ss_pred             CCCchHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCCHHHeEECCCCcEEEeeCCCCeec
Confidence            45789998887654   588899999999999999999988   9999999999999999999999999987653

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=99.43  E-value=1.6e-12  Score=72.83  Aligned_cols=69  Identities=23%  Similarity=0.406  Sum_probs=61.6

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      +++|+|..++....   .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++...
T Consensus        83 ~~~g~L~~~~~~~~---~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~kL~DfG~~~~~  151 (323)
T cd05616          83 VNGGDLMYQIQQVG---RFKEPHAVFYAAEIAIGLFFLHSK---GIIYRDLKLDNVMLDSEGHIKIADFGMCKEN  151 (323)
T ss_pred             CCCCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CEEecCCCHHHeEECCCCcEEEccCCCceec
Confidence            45789998887654   588889999999999999999988   9999999999999999999999999988653

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=99.43  E-value=1.6e-12  Score=72.89  Aligned_cols=69  Identities=30%  Similarity=0.427  Sum_probs=60.7

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      +++|+|..++....   .+.+.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++...
T Consensus        78 ~~~~~L~~~~~~~~---~~~~~~~~~~~~qi~~~L~~lH~~---giiHrDlkp~Nili~~~~~~kl~DfG~a~~~  146 (325)
T cd05602          78 INGGELFYHLQRER---CFLEPRARFYAAEIASALGYLHSL---NIVYRDLKPENILLDSQGHIVLTDFGLCKEN  146 (325)
T ss_pred             CCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHeEECCCCCEEEccCCCCccc
Confidence            45789998887654   477888888999999999999988   9999999999999999999999999988653

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=99.43  E-value=1.1e-12  Score=73.59  Aligned_cols=68  Identities=29%  Similarity=0.434  Sum_probs=60.9

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEccccccee
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARL   74 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~   74 (84)
                      +++|+|..++....   .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++..
T Consensus        77 ~~~~~L~~~l~~~~---~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~  144 (323)
T cd05595          77 ANGGELFFHLSRER---VFTEERARFYGAEIVSALEYLHSR---DVVYRDIKLENLMLDKDGHIKITDFGLCKE  144 (323)
T ss_pred             CCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHEEEcCCCCEEecccHHhcc
Confidence            46789988887654   588899999999999999999988   999999999999999999999999998765

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=99.43  E-value=1.4e-12  Score=73.25  Aligned_cols=69  Identities=26%  Similarity=0.416  Sum_probs=61.2

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      +++|+|..++....   .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++...
T Consensus        77 ~~~g~L~~~l~~~~---~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDikp~NIll~~~~~~kL~DfG~~~~~  145 (328)
T cd05593          77 VNGGELFFHLSRER---VFSEDRTRFYGAEIVSALDYLHSG---KIVYRDLKLENLMLDKDGHIKITDFGLCKEG  145 (328)
T ss_pred             CCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CeEecccCHHHeEECCCCcEEEecCcCCccC
Confidence            35789988887654   588899999999999999999988   9999999999999999999999999987653

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=99.43  E-value=1.8e-12  Score=71.47  Aligned_cols=72  Identities=22%  Similarity=0.308  Sum_probs=61.7

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++|+|..++..... ..+++.....++.|++.++.|+|+.   +++|+|+++.|++++.+..+++.|||++....
T Consensus        82 ~~~g~L~~~~~~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~---~iiH~dikp~Nill~~~~~~kl~Dfg~~~~~~  153 (285)
T cd05631          82 MNGGDLKFHIYNMGN-PGFDEQRAIFYAAELCCGLEDLQRE---RIVYRDLKPENILLDDRGHIRISDLGLAVQIP  153 (285)
T ss_pred             cCCCcHHHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHHhC---CEEeCCCCHHHEEECCCCCEEEeeCCCcEEcC
Confidence            467899888764332 1478889999999999999999988   99999999999999999999999999987653

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=99.43  E-value=1.3e-12  Score=73.41  Aligned_cols=70  Identities=29%  Similarity=0.425  Sum_probs=62.3

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++|+|.+++.+..   .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++....
T Consensus       100 ~~~~~L~~~l~~~~---~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~  169 (329)
T PTZ00263        100 VVGGELFTHLRKAG---RFPNDVAKFYHAELVLAFEYLHSK---DIIYRDLKPENLLLDNKGHVKVTDFGFAKKVP  169 (329)
T ss_pred             CCCChHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCHHHEEECCCCCEEEeeccCceEcC
Confidence            35789999988654   578888888999999999999998   99999999999999999999999999987654

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=99.43  E-value=1.9e-12  Score=72.82  Aligned_cols=54  Identities=31%  Similarity=0.500  Sum_probs=49.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123           19 LNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus        19 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      +.+.....++.|++.|+.|+|..   +++|+|+++.|++++.+..+++.|||+++.+
T Consensus       171 l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDiKp~Nil~~~~~~~kl~DfG~a~~~  224 (338)
T cd05102         171 LTMEDLICYSFQVARGMEFLASR---KCIHRDLAARNILLSENNVVKICDFGLARDI  224 (338)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHC---CEECCCCccceEEEcCCCcEEEeeccccccc
Confidence            56677888899999999999988   9999999999999999999999999998754

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=99.43  E-value=1.7e-12  Score=72.59  Aligned_cols=68  Identities=29%  Similarity=0.441  Sum_probs=60.2

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEccccccee
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARL   74 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~   74 (84)
                      +++|+|..++....   .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++..
T Consensus        78 ~~~~~L~~~l~~~~---~~~~~~~~~~~~qi~~~L~~lH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~  145 (321)
T cd05603          78 VNGGELFFHLQRER---CFLEPRARFYAAEVASAIGYLHSL---NIIYRDLKPENILLDSQGHVVLTDFGLCKE  145 (321)
T ss_pred             CCCCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCCHHHeEECCCCCEEEccCCCCcc
Confidence            45789988887544   578888888999999999999988   999999999999999999999999998765

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=99.43  E-value=1.5e-12  Score=73.02  Aligned_cols=69  Identities=22%  Similarity=0.411  Sum_probs=61.8

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      +++|+|..++....   .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++...
T Consensus        83 ~~~g~L~~~i~~~~---~l~~~~~~~i~~qi~~al~~lH~~---~ivHrDikp~Nill~~~~~ikL~Dfg~~~~~  151 (323)
T cd05615          83 VNGGDLMYHIQQVG---KFKEPQAVFYAAEISVGLFFLHRR---GIIYRDLKLDNVMLDSEGHIKIADFGMCKEH  151 (323)
T ss_pred             CCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHeEECCCCCEEEecccccccc
Confidence            45889999987654   588999999999999999999988   9999999999999999999999999987653

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=99.43  E-value=1e-12  Score=74.91  Aligned_cols=67  Identities=22%  Similarity=0.362  Sum_probs=60.5

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccce
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTAR   73 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~   73 (84)
                      +++|+|.+++.+..   .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++.
T Consensus        83 ~~~g~L~~~i~~~~---~~~~~~~~~~~~qi~~al~~lH~~---~ivHrDlkp~Nill~~~~~ikL~DFG~a~  149 (376)
T cd05598          83 IPGGDMMSLLIRLG---IFEEDLARFYIAELTCAIESVHKM---GFIHRDIKPDNILIDRDGHIKLTDFGLCT  149 (376)
T ss_pred             CCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCCHHHEEECCCCCEEEEeCCCCc
Confidence            46899999998654   578888888999999999999988   99999999999999999999999999875

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=99.43  E-value=1.7e-12  Score=72.78  Aligned_cols=69  Identities=30%  Similarity=0.445  Sum_probs=61.2

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      +++|+|..++.+..   .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++...
T Consensus        78 ~~~~~L~~~l~~~~---~~~~~~~~~~~~qi~~al~~lH~~---givH~Dlkp~NIll~~~~~~kL~DfG~~~~~  146 (325)
T cd05604          78 VNGGELFFHLQRER---SFPEPRARFYAAEIASALGYLHSI---NIVYRDLKPENILLDSQGHVVLTDFGLCKEG  146 (325)
T ss_pred             CCCCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCHHHeEECCCCCEEEeecCCcccC
Confidence            45789988887654   588999999999999999999988   9999999999999999999999999987653

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=99.43  E-value=1.3e-12  Score=72.28  Aligned_cols=70  Identities=33%  Similarity=0.538  Sum_probs=62.2

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++|+|.+++.+..   .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++....
T Consensus        83 ~~~~~L~~~~~~~~---~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~NIli~~~~~~kl~Dfg~~~~~~  152 (291)
T cd05612          83 VPGGELFSYLRNSG---RFSNSTGLFYASEIVCALEYLHSK---EIVYRDLKPENILLDKEGHIKLTDFGFAKKLR  152 (291)
T ss_pred             CCCCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCHHHeEECCCCCEEEEecCcchhcc
Confidence            35789999998654   588888889999999999999988   99999999999999999999999999887653

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=99.43  E-value=6.9e-13  Score=74.27  Aligned_cols=68  Identities=26%  Similarity=0.539  Sum_probs=61.2

Q ss_pred             CcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            4 GSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         4 g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      .||...++...   .++......++.|++.|+.|+|+.   +++|+|+++.|+++..+...|+.|||+|+....
T Consensus       110 tDL~~iik~~~---~L~d~H~q~f~YQiLrgLKyiHSA---nViHRDLKPsNll~n~~c~lKI~DFGLAR~~~~  177 (359)
T KOG0660|consen  110 TDLHQIIKSQQ---DLTDDHAQYFLYQILRGLKYIHSA---NVIHRDLKPSNLLLNADCDLKICDFGLARYLDK  177 (359)
T ss_pred             hHHHHHHHcCc---cccHHHHHHHHHHHHHhcchhhcc---cccccccchhheeeccCCCEEeccccceeeccc
Confidence            46777777654   488999999999999999999998   999999999999999999999999999998864

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=99.42  E-value=1.4e-12  Score=73.27  Aligned_cols=70  Identities=30%  Similarity=0.417  Sum_probs=61.7

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      +++|+|.+++.+...  .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++..+
T Consensus        83 ~~~g~L~~~l~~~~~--~l~~~~~~~~~~qi~~al~~lH~~---~iiHrDlkp~Nili~~~~~~kL~DfG~a~~~  152 (332)
T cd05623          83 YVGGDLLTLLSKFED--RLPEDMARFYLAEMVIAIDSVHQL---HYVHRDIKPDNILMDMNGHIRLADFGSCLKL  152 (332)
T ss_pred             cCCCcHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHEEECCCCCEEEeecchheec
Confidence            358999999986433  578888899999999999999988   9999999999999999999999999988654

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=99.42  E-value=1.5e-12  Score=78.11  Aligned_cols=80  Identities=30%  Similarity=0.420  Sum_probs=69.4

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCC----CCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL----NLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~i~~~g~~~~~~   76 (84)
                      |.+|||...+.+-.+.+-+++.....++..+..|+.|+|..   +++|||+++.||+...    ....|+.|||.|+.+.
T Consensus        99 C~gGsL~~~L~~PEN~~GLpE~e~l~lL~d~~~al~~LrEn---~IvHRDlKP~NIvl~~Gedgq~IyKLtDfG~Arel~  175 (732)
T KOG4250|consen   99 CSGGSLRKVLNSPENAYGLPESEFLDLLSDLVSALRHLREN---GIVHRDLKPGNIVLQIGEDGQSIYKLTDFGAARELD  175 (732)
T ss_pred             cCCCcHHHHhcCcccccCCCHHHHHHHHHHHHHHHHHHHHc---CceeccCCCCcEEEeecCCCceEEeeecccccccCC
Confidence            57999999999877777799999999999999999999998   9999999999999843    3357999999999988


Q ss_pred             CCCCCCC
Q 040123           77 VDSSNRT   83 (84)
Q Consensus        77 ~~~~~~~   83 (84)
                      ++....+
T Consensus       176 d~s~~~S  182 (732)
T KOG4250|consen  176 DNSLFTS  182 (732)
T ss_pred             CCCeeee
Confidence            7765443

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=99.42  E-value=2.1e-12  Score=73.74  Aligned_cols=69  Identities=28%  Similarity=0.391  Sum_probs=61.1

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++|+|.++++..    .++......++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++..+.
T Consensus       125 ~~gg~L~~~~~~~----~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDLkp~NIll~~~~~ikL~DfG~a~~~~  193 (371)
T cd05622         125 MPGGDLVNLMSNY----DVPEKWARFYTAEVVLALDAIHSM---GFIHRDVKPDNMLLDKSGHLKLADFGTCMKMN  193 (371)
T ss_pred             CCCCcHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHHHC---CEEeCCCCHHHEEECCCCCEEEEeCCceeEcC
Confidence            4588999988753    377888888999999999999988   99999999999999999999999999987654

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=99.42  E-value=2.1e-12  Score=72.53  Aligned_cols=68  Identities=22%  Similarity=0.410  Sum_probs=61.2

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEccccccee
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARL   74 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~   74 (84)
                      +++|+|..++.+..   .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++..
T Consensus        78 ~~~g~L~~~~~~~~---~l~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~  145 (329)
T cd05588          78 VSGGDLMFHMQRQR---KLPEEHARFYSAEISLALNFLHER---GIIYRDLKLDNVLLDAEGHIKLTDYGMCKE  145 (329)
T ss_pred             CCCCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHeEECCCCCEEECcCccccc
Confidence            46889998887654   588999999999999999999988   999999999999999999999999998764

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=99.42  E-value=2.1e-12  Score=72.58  Aligned_cols=69  Identities=23%  Similarity=0.394  Sum_probs=61.4

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      +++|+|..++....   .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++...
T Consensus        78 ~~~~~L~~~~~~~~---~l~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dikp~Nili~~~~~~kL~DfG~~~~~  146 (329)
T cd05618          78 VNGGDLMFHMQRQR---KLPEEHARFYSAEISLALNYLHER---GIIYRDLKLDNVLLDSEGHIKLTDYGMCKEG  146 (329)
T ss_pred             CCCCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHHHEEECCCCCEEEeeCCccccc
Confidence            46789988887654   588899999999999999999988   9999999999999999999999999988653

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=99.42  E-value=1.9e-12  Score=72.43  Aligned_cols=69  Identities=28%  Similarity=0.432  Sum_probs=61.2

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      +++|+|..++....   .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++...
T Consensus        78 ~~~~~L~~~l~~~~---~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDikp~Nill~~~~~~kL~Dfg~~~~~  146 (321)
T cd05591          78 VNGGDLMFQIQRSR---KFDEPRSRFYAAEVTLALMFLHRH---GVIYRDLKLDNILLDAEGHCKLADFGMCKEG  146 (321)
T ss_pred             CCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHeEECCCCCEEEeecccceec
Confidence            45789998887654   578888889999999999999988   9999999999999999999999999987653

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=99.42  E-value=1.9e-12  Score=72.71  Aligned_cols=68  Identities=22%  Similarity=0.420  Sum_probs=61.1

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEccccccee
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARL   74 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~   74 (84)
                      +++|+|..++....   .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++..
T Consensus        78 ~~~~~L~~~~~~~~---~l~~~~~~~~~~qi~~al~~lH~~---~ivHrDlkp~Nili~~~~~~kl~Dfg~~~~  145 (327)
T cd05617          78 VNGGDLMFHMQRQR---KLPEEHARFYAAEICIALNFLHER---GIIYRDLKLDNVLLDADGHIKLTDYGMCKE  145 (327)
T ss_pred             CCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHEEEeCCCCEEEecccccee
Confidence            46889988887654   588999999999999999999988   999999999999999999999999998764

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=99.42  E-value=3.3e-13  Score=79.07  Aligned_cols=75  Identities=28%  Similarity=0.420  Sum_probs=67.3

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccCCCC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSS   80 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~~~~   80 (84)
                      |-||++...++.++   .+...+...++..++.++.|+|..   +++++|++|+|++++.++.+|+.|||+++.+.....
T Consensus       502 ClGGElWTiLrdRg---~Fdd~tarF~~acv~EAfeYLH~k---~iIYRDLKPENllLd~~Gy~KLVDFGFAKki~~g~K  575 (732)
T KOG0614|consen  502 CLGGELWTILRDRG---SFDDYTARFYVACVLEAFEYLHRK---GIIYRDLKPENLLLDNRGYLKLVDFGFAKKIGSGRK  575 (732)
T ss_pred             hcCchhhhhhhhcC---CcccchhhhhHHHHHHHHHHHHhc---CceeccCChhheeeccCCceEEeehhhHHHhccCCc
Confidence            34899999999887   688899999999999999999998   999999999999999999999999999988765544


Q ss_pred             C
Q 040123           81 N   81 (84)
Q Consensus        81 ~   81 (84)
                      +
T Consensus       576 T  576 (732)
T KOG0614|consen  576 T  576 (732)
T ss_pred             e
Confidence            3

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=99.41  E-value=1.6e-12  Score=72.84  Aligned_cols=70  Identities=23%  Similarity=0.312  Sum_probs=60.1

Q ss_pred             cHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccCCC
Q 040123            5 SLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDS   79 (84)
Q Consensus         5 ~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~~~   79 (84)
                      ||.+.+.+...  .+.......+..|++.|+.|+|..   -++|+|++++|+++..++.+|+.|||+|+.+....
T Consensus       162 DLksl~d~m~q--~F~~~evK~L~~QlL~glk~lH~~---wilHRDLK~SNLLm~~~G~lKiaDFGLAR~ygsp~  231 (419)
T KOG0663|consen  162 DLKSLMETMKQ--PFLPGEVKTLMLQLLRGLKHLHDN---WILHRDLKTSNLLLSHKGILKIADFGLAREYGSPL  231 (419)
T ss_pred             hHHHHHHhccC--CCchHHHHHHHHHHHHHHHHHhhc---eeEecccchhheeeccCCcEEecccchhhhhcCCc
Confidence            45566655443  578888889999999999999988   99999999999999999999999999999886543

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=99.41  E-value=2.6e-12  Score=71.88  Aligned_cols=68  Identities=22%  Similarity=0.485  Sum_probs=60.6

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEccccccee
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARL   74 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~   74 (84)
                      +++|+|..++....   .++......++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++..
T Consensus        78 ~~~g~L~~~i~~~~---~~~~~~~~~~~~qi~~~l~~lH~~---~ivHrDlkp~Nil~~~~~~~kl~Dfg~~~~  145 (316)
T cd05620          78 LNGGDLMFHIQDKG---RFDLYRATFYAAEIVCGLQFLHSK---GIIYRDLKLDNVMLDRDGHIKIADFGMCKE  145 (316)
T ss_pred             CCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHeEECCCCCEEeCccCCCee
Confidence            35789998887654   578888899999999999999988   999999999999999999999999998764

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=99.41  E-value=2e-12  Score=73.79  Aligned_cols=69  Identities=28%  Similarity=0.392  Sum_probs=61.1

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++|+|.+++...    .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++..+.
T Consensus       125 ~~gg~L~~~l~~~----~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDLkp~NILl~~~~~~kL~DfG~~~~~~  193 (370)
T cd05596         125 MPGGDLVNLMSNY----DIPEKWARFYTAEVVLALDAIHSM---GFIHRDVKPDNMLLDKSGHLKLADFGTCMKMD  193 (370)
T ss_pred             CCCCcHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHEEEcCCCCEEEEeccceeecc
Confidence            4689999988753    377888888999999999999988   99999999999999999999999999987654

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=99.41  E-value=2.4e-12  Score=71.97  Aligned_cols=70  Identities=27%  Similarity=0.352  Sum_probs=62.1

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++|+|.+++.+..   .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++....
T Consensus        80 ~~~~~L~~~l~~~~---~l~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~  149 (318)
T cd05582          80 LRGGDLFTRLSKEV---MFTEEDVKFYLAELALALDHLHSL---GIIYRDLKPENILLDEEGHIKLTDFGLSKESI  149 (318)
T ss_pred             CCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHeEECCCCcEEEeeccCCcccC
Confidence            35789999887654   588999999999999999999988   99999999999999999999999999887643

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=99.41  E-value=1.5e-12  Score=73.10  Aligned_cols=70  Identities=21%  Similarity=0.316  Sum_probs=62.2

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++|+|.+++....   .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++....
T Consensus        83 ~~g~~L~~~l~~~~---~l~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kL~Dfg~a~~~~  152 (333)
T cd05600          83 VPGGDFRTLLNNLG---VLSEDHARFYMAEMFEAVDALHEL---GYIHRDLKPENFLIDASGHIKLTDFGLSKGIV  152 (333)
T ss_pred             CCCCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEECCCCCEEEEeCcCCcccc
Confidence            46899999997654   588889999999999999999988   99999999999999999999999999887543

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=99.40  E-value=3.5e-12  Score=71.49  Aligned_cols=69  Identities=26%  Similarity=0.414  Sum_probs=60.6

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      +++|+|.+++.+..   .+.+.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||+++..
T Consensus        82 ~~~~~L~~~~~~~~---~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~  150 (323)
T cd05584          82 LSGGELFMHLEREG---IFMEDTACFYLSEISLALEHLHQQ---GIIYRDLKPENILLDAQGHVKLTDFGLCKES  150 (323)
T ss_pred             CCCchHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEECCCCCEEEeeCcCCeec
Confidence            35789999887654   577888888999999999999988   9999999999999999999999999987643

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=99.40  E-value=3.9e-12  Score=71.19  Aligned_cols=68  Identities=25%  Similarity=0.473  Sum_probs=60.9

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEccccccee
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARL   74 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~   74 (84)
                      +++|+|..++....   .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++..
T Consensus        78 ~~~g~L~~~l~~~~---~~~~~~~~~~~~qi~~al~~LH~~---~ivHrdikp~Nil~~~~~~~kl~Dfg~~~~  145 (316)
T cd05619          78 LNGGDLMFHIQSCH---KFDLPRATFYAAEIICGLQFLHSK---GIVYRDLKLDNILLDTDGHIKIADFGMCKE  145 (316)
T ss_pred             CCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHhC---CeEeCCCCHHHEEECCCCCEEEccCCcceE
Confidence            46889999987654   578888889999999999999988   999999999999999999999999998764

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=99.39  E-value=3.2e-12  Score=72.10  Aligned_cols=71  Identities=28%  Similarity=0.419  Sum_probs=63.1

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      +++|+|.+++.+..   .++......++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++..+..
T Consensus        83 ~~~~~L~~~l~~~~---~l~~~~~~~i~~qi~~aL~~LH~~---giiH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~  153 (350)
T cd05573          83 MPGGDLMNLLIRKD---VFPEETARFYIAELVLALDSVHKL---GFIHRDIKPDNILIDADGHIKLADFGLCKKMNK  153 (350)
T ss_pred             CCCCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHeEECCCCCEEeecCCCCccCcc
Confidence            35789999988763   588899999999999999999988   999999999999999999999999999876543

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=99.39  E-value=6.8e-12  Score=68.28  Aligned_cols=71  Identities=28%  Similarity=0.478  Sum_probs=62.0

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++|+|.+++.....  .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++..+.
T Consensus        76 ~~~~~L~~~l~~~~~--~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~  146 (257)
T cd05115          76 ASGGPLNKFLSGKKD--EITVSNVVELMHQVSMGMKYLEGK---NFVHRDLAARNVLLVNQHYAKISDFGLSKALG  146 (257)
T ss_pred             CCCCCHHHHHHhCCC--CCCHHHHHHHHHHHHHHHHHHHhc---CeeecccchheEEEcCCCcEEeccCCcccccc
Confidence            357899999875433  588899999999999999999988   99999999999999999999999999887543

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.38  E-value=3.6e-12  Score=73.48  Aligned_cols=73  Identities=33%  Similarity=0.526  Sum_probs=64.3

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      |.+|++.+.++..-.. -+++..+..++.+++.|+.|+|..   +.+|||+++.||+++.++.++++|||....+-.
T Consensus       106 Ma~GS~ldIik~~~~~-Gl~E~~Ia~iLre~LkaL~YLH~~---G~IHRdvKAgnILi~~dG~VkLadFgvsa~l~~  178 (516)
T KOG0582|consen  106 MAGGSLLDIIKTYYPD-GLEEASIATILREVLKALDYLHQN---GHIHRDVKAGNILIDSDGTVKLADFGVSASLFD  178 (516)
T ss_pred             hcCCcHHHHHHHHccc-cccHHHHHHHHHHHHHHHHHHHhc---CceecccccccEEEcCCCcEEEcCceeeeeecc
Confidence            6789999999875433 388889999999999999999998   999999999999999999999999998766543

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=99.38  E-value=2.4e-12  Score=80.55  Aligned_cols=73  Identities=33%  Similarity=0.418  Sum_probs=66.7

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccCCC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDS   79 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~~~   79 (84)
                      |+||||...+.+.+   .+++..+..|.+++..|+.-+|.-   +++|+|++|.|++++..+.+++.|||.+-.+..+.
T Consensus       157 ~pGGDlltLlSk~~---~~pE~~ArFY~aEiVlAldslH~m---gyVHRDiKPDNvLld~~GHikLADFGsClkm~~dG  229 (1317)
T KOG0612|consen  157 MPGGDLLTLLSKFD---RLPEDWARFYTAEIVLALDSLHSM---GYVHRDIKPDNVLLDKSGHIKLADFGSCLKMDADG  229 (1317)
T ss_pred             ccCchHHHHHhhcC---CChHHHHHHHHHHHHHHHHHHHhc---cceeccCCcceeEecccCcEeeccchhHHhcCCCC
Confidence            67999999999876   599999999999999999999977   99999999999999999999999999887776543

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=99.38  E-value=3.8e-12  Score=75.08  Aligned_cols=73  Identities=25%  Similarity=0.308  Sum_probs=62.6

Q ss_pred             CCCCcHHHHHhcCC-CcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDD-EAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++|+|.+++.... ....+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||+++.+.
T Consensus       121 ~~~gsL~~~l~~~~~~~~~l~e~~~~~i~~qll~aL~~lH~~---~IiHrDLKP~NILl~~~~~vkL~DFGls~~~~  194 (496)
T PTZ00283        121 ANAGDLRQEIKSRAKTNRTFREHEAGLLFIQVLLAVHHVHSK---HMIHRDIKSANILLCSNGLVKLGDFGFSKMYA  194 (496)
T ss_pred             CCCCcHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEEeCCCCEEEEecccCeecc
Confidence            35789999887533 223588889999999999999999988   99999999999999999999999999987654

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=99.38  E-value=3.5e-12  Score=74.24  Aligned_cols=75  Identities=28%  Similarity=0.404  Sum_probs=66.4

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCC---CCcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL---NLEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~i~~~g~~~~~~~   77 (84)
                      |+|.||+.||+.+.   .+++..+..++-|++.++.|+... +++++|-|+++.||++..   .+.+||.|||+++.+..
T Consensus       550 ceGNDLDFYLKQhk---lmSEKEARSIiMQiVnAL~YLNEi-kpPIIHYDLKPgNILLv~GtacGeIKITDFGLSKIMdd  625 (775)
T KOG1151|consen  550 CEGNDLDFYLKQHK---LMSEKEARSIIMQIVNALKYLNEI-KPPIIHYDLKPGNILLVNGTACGEIKITDFGLSKIMDD  625 (775)
T ss_pred             cCCCchhHHHHhhh---hhhHHHHHHHHHHHHHHHHHHhcc-CCCeeeeccCCccEEEecCcccceeEeeecchhhhccC
Confidence            57899999999887   689999999999999999999876 889999999999999954   35789999999999876


Q ss_pred             CC
Q 040123           78 DS   79 (84)
Q Consensus        78 ~~   79 (84)
                      +.
T Consensus       626 dS  627 (775)
T KOG1151|consen  626 DS  627 (775)
T ss_pred             Cc
Confidence            54

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.37  E-value=8.2e-12  Score=68.64  Aligned_cols=71  Identities=28%  Similarity=0.491  Sum_probs=62.1

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++|+|.+++.+...  .+++.....++.|++.++.|+|..   +++|+++++.|++++.+..+++.|||++..+.
T Consensus        89 ~~~~~L~~~l~~~~~--~l~~~~~~~~~~~l~~aL~~LH~~---~i~H~dlkp~nili~~~~~~~l~dfg~~~~~~  159 (284)
T cd05081          89 LPYGSLRDYLQKHRE--RLDHRKLLLYASQICKGMEYLGSK---RYVHRDLATRNILVESENRVKIGDFGLTKVLP  159 (284)
T ss_pred             cCCCCHHHHHHhcCc--CCCHHHHHHHHHHHHHHHHHHHHC---CceeccCCHhhEEECCCCeEEECCCccccccc
Confidence            357899999875432  478889999999999999999988   99999999999999999999999999987654

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=99.37  E-value=5.4e-12  Score=74.09  Aligned_cols=73  Identities=22%  Similarity=0.257  Sum_probs=62.3

Q ss_pred             CCCCcHHHHHhcCC-CcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDD-EAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++|+|.+++.... ....+++.....++.|++.++.|+|..   +++|+|+++.|++++....+++.|||++..+.
T Consensus       147 ~~gg~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~---~ivHrDlkp~NIll~~~~~~kL~DFgla~~~~  220 (478)
T PTZ00267        147 GSGGDLNKQIKQRLKEHLPFQEYEVGLLFYQIVLALDEVHSR---KMMHRDLKSANIFLMPTGIIKLGDFGFSKQYS  220 (478)
T ss_pred             CCCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhC---CEEECCcCHHhEEECCCCcEEEEeCcCceecC
Confidence            46899998886432 122578888889999999999999988   99999999999999999999999999988654

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.37  E-value=1.4e-12  Score=77.85  Aligned_cols=68  Identities=25%  Similarity=0.378  Sum_probs=58.2

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      .|||+. .+.+.+   .+++..+..|+++++.|+.|+|..   +++++|++..|++++..+.+||.|||+++...
T Consensus       452 ~Ggdm~-~~~~~~---~F~e~rarfyaAev~l~L~fLH~~---~IIYRDlKLdNiLLD~eGh~kiADFGlcKe~m  519 (694)
T KOG0694|consen  452 AGGDLM-HHIHTD---VFSEPRARFYAAEVVLGLQFLHEN---GIIYRDLKLDNLLLDTEGHVKIADFGLCKEGM  519 (694)
T ss_pred             CCCcEE-EEEecc---cccHHHHHHHHHHHHHHHHHHHhc---CceeeecchhheEEcccCcEEecccccccccC
Confidence            367733 232223   699999999999999999999999   99999999999999999999999999998654

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.37  E-value=2.4e-12  Score=75.96  Aligned_cols=73  Identities=27%  Similarity=0.402  Sum_probs=64.1

Q ss_pred             CCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCC-CcEEEcccccceeccCCCC
Q 040123            3 RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLN-LEASVADFGTARLLHVDSS   80 (84)
Q Consensus         3 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~i~~~g~~~~~~~~~~   80 (84)
                      +|||.+||-++..  -+.+.....|++||+.++.|||.-   .++|+|++++|+++..+ +.+|+.|||++-.+.+...
T Consensus       101 ~GDl~DyImKHe~--Gl~E~La~kYF~QI~~AI~YCHqL---HVVHRDLKPENVVFFEKlGlVKLTDFGFSNkf~PG~k  174 (864)
T KOG4717|consen  101 GGDLFDYIMKHEE--GLNEDLAKKYFAQIVHAISYCHQL---HVVHRDLKPENVVFFEKLGLVKLTDFGFSNKFQPGKK  174 (864)
T ss_pred             CchHHHHHHhhhc--cccHHHHHHHHHHHHHHHHHHhhh---hhhcccCCcceeEEeeecCceEeeeccccccCCCcch
Confidence            6899999998876  488999999999999999999977   99999999999988655 6789999999887766544

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=99.37  E-value=1.3e-11  Score=66.97  Aligned_cols=72  Identities=31%  Similarity=0.460  Sum_probs=62.2

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++|+|.+++.+.... .+++.....++.+++.++.++|..   +++|+++++.|++++.+..+++.|||++....
T Consensus        82 ~~~~~L~~~~~~~~~~-~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~  153 (256)
T cd05082          82 MAKGSLVDYLRSRGRS-VLGGDCLLKFSLDVCEAMEYLEAN---NFVHRDLAARNVLVSEDNVAKVSDFGLTKEAS  153 (256)
T ss_pred             CCCCcHHHHHHhcCCC-CCCHHHHHHHHHHHHHHHHHHHhC---CEeccccchheEEEcCCCcEEecCCccceecc
Confidence            3578999998765432 478888899999999999999988   99999999999999999999999999877543

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=99.36  E-value=8.6e-12  Score=69.81  Aligned_cols=68  Identities=22%  Similarity=0.433  Sum_probs=61.0

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEccccccee
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARL   74 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~   74 (84)
                      +++|+|..++.+..   .+++.....++.|++.++.|+|..   +++|+++++.|++++.+..+++.|||++..
T Consensus        78 ~~~~~L~~~~~~~~---~l~~~~~~~~~~qi~~~l~~LH~~---~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~  145 (318)
T cd05570          78 VNGGDLMFHIQRSG---RFDEPRARFYAAEIVLGLQFLHER---GIIYRDLKLDNVLLDSEGHIKIADFGMCKE  145 (318)
T ss_pred             CCCCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHhC---CeEccCCCHHHeEECCCCcEEecccCCCee
Confidence            35789988887654   588999999999999999999988   999999999999999999999999998764

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=99.36  E-value=1.1e-11  Score=67.35  Aligned_cols=69  Identities=29%  Similarity=0.481  Sum_probs=61.4

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      ++|+|.+++....   .+++.....++.|++.++.++|..   +++|+++++.|++++.+..+++.|||++..+.
T Consensus        78 ~~~~L~~~l~~~~---~~~~~~~~~i~~qi~~al~~lH~~---~i~H~dlkp~nill~~~~~~kl~Dfg~~~~~~  146 (257)
T cd05116          78 ELGPLNKFLQKNK---HVTEKNITELVHQVSMGMKYLEET---NFVHRDLAARNVLLVTQHYAKISDFGLSKALG  146 (257)
T ss_pred             CCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CEeecccchhhEEEcCCCeEEECCCccccccC
Confidence            4688999987654   588899999999999999999988   99999999999999998899999999887654

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=99.36  E-value=8e-12  Score=68.77  Aligned_cols=73  Identities=25%  Similarity=0.350  Sum_probs=61.6

Q ss_pred             CCCCcHHHHHhcCC-CcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDD-EAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      |++|+|..++.... ....+++.....++.|++.++.|+|+.   +++|+|+++.|++++.+..+++.|||++..+.
T Consensus        75 ~~~g~L~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~  148 (280)
T cd05608          75 MNGGDLRYHIYNVDEENPGFPEPRACFYTAQIISGLEHLHQR---RIIYRDLKPENVLLDNDGNVRISDLGLAVELK  148 (280)
T ss_pred             CCCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEeeCccceecC
Confidence            46789988775422 122588899999999999999999988   99999999999999988899999999987653

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=99.36  E-value=1.4e-11  Score=67.61  Aligned_cols=70  Identities=27%  Similarity=0.517  Sum_probs=62.3

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      ++|+|.+++.+...  .+++.....++.|++.++.|+|..   +++|+++++.|++++.+..+++.|||.+..+.
T Consensus        91 ~~g~L~~~l~~~~~--~~~~~~~~~~~~qi~~~l~~LH~~---~i~H~di~p~nil~~~~~~~kL~dfg~~~~~~  160 (279)
T cd05057          91 PLGCLLDYVRNHKD--NIGSQYLLNWCVQIAKGMSYLEEK---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLD  160 (279)
T ss_pred             CCCcHHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHhC---CEEecccCcceEEEcCCCeEEECCCccccccc
Confidence            57899999886543  488899999999999999999988   99999999999999988999999999887654

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=99.36  E-value=8.6e-12  Score=68.09  Aligned_cols=73  Identities=29%  Similarity=0.459  Sum_probs=60.9

Q ss_pred             CCCCcHHHHHhcCC---CcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDD---EAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      |++|+|.+++....   ....+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++..+.
T Consensus        88 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~  163 (272)
T cd05075          88 MKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIASGMEYLSSK---SFIHRDLAARNCMLNENMNVCVADFGLSKKIY  163 (272)
T ss_pred             CCCCcHHHHHHHhcccCCcccCCHHHHHHHHHHHHHHHHHHHHC---CeeccccchhheEEcCCCCEEECCCCcccccC
Confidence            35788888774321   122478888999999999999999988   99999999999999999999999999987654

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.36  E-value=2.4e-12  Score=76.01  Aligned_cols=72  Identities=29%  Similarity=0.520  Sum_probs=64.2

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccCCC
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDS   79 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~~~   79 (84)
                      .+|++++|+.+++   ...+.....++.|+..++.|||.+   .++|+||++.|++++.+..++|.|||++..+....
T Consensus       138 ~~ge~~~yl~~~g---r~~e~~ar~~F~q~vsaveYcH~k---~ivHrdLk~eNilL~~~mnikIaDfgfS~~~~~~~  209 (596)
T KOG0586|consen  138 SGGELFDYLVKHG---RMKEKEARAKFRQIVSAVEYCHSK---NIVHRDLKAENILLDENMNIKIADFGFSTFFDYGL  209 (596)
T ss_pred             cCchhHHHHHhcc---cchhhhhhhhhHHHHHHHHHHhhc---ceeccccchhhcccccccceeeeccccceeecccc
Confidence            4789999999887   466788888999999999999999   99999999999999999999999999988776443

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=99.36  E-value=1e-11  Score=68.99  Aligned_cols=70  Identities=26%  Similarity=0.492  Sum_probs=61.3

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      ++|+|.+++.....  .+++.....++.|++.++.|+|..   +++|+++++.|++++.+..+++.|||++..+.
T Consensus        91 ~~g~l~~~~~~~~~--~~~~~~~~~~~~qi~~~L~~LH~~---~ivH~dikp~Nill~~~~~~kL~Dfg~~~~~~  160 (303)
T cd05110          91 PHGCLLDYVHEHKD--NIGSQLLLNWCVQIAKGMMYLEER---RLVHRDLAARNVLVKSPNHVKITDFGLARLLE  160 (303)
T ss_pred             CCCCHHHHHHhccc--CCCHHHHHHHHHHHHHHHHHHhhc---CeeccccccceeeecCCCceEEcccccccccc
Confidence            57889998876543  478888899999999999999988   99999999999999988899999999987654

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=99.35  E-value=8.7e-12  Score=72.30  Aligned_cols=74  Identities=32%  Similarity=0.561  Sum_probs=66.1

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCC------CCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDC------TLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      +.|+|.+||+.+    .++|..+..++..++.|+.|+|...      ++.+.|||+++.|+++..+..+-|.|||++..+
T Consensus       291 ~kGsL~dyL~~n----tisw~~~cria~SmarGLa~LHee~p~~d~~Kp~IaHRDlkSkNVLvK~DlTccIaDFGLAl~~  366 (534)
T KOG3653|consen  291 PKGSLCDYLKAN----TISWNSLCRIAESMARGLAHLHEELPRGDHHKPPIAHRDLKSKNVLVKNDLTCCIADFGLALRL  366 (534)
T ss_pred             cCCcHHHHHHhc----cccHHHHHHHHHHHHHHHHHhcccCCcCCCCCCccccccccccceEEccCCcEEeeccceeEEe
Confidence            469999999875    5899999999999999999999873      568999999999999999999999999999887


Q ss_pred             cCCC
Q 040123           76 HVDS   79 (84)
Q Consensus        76 ~~~~   79 (84)
                      .+..
T Consensus       367 ~p~~  370 (534)
T KOG3653|consen  367 EPGK  370 (534)
T ss_pred             cCCC
Confidence            6543

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=99.35  E-value=8.4e-12  Score=68.71  Aligned_cols=69  Identities=26%  Similarity=0.316  Sum_probs=61.6

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      +++|+|..++....   .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++...
T Consensus        79 ~~~~~L~~~i~~~~---~l~~~~~~~i~~qi~~al~~lH~~---~ivH~dikp~Nil~~~~~~~~l~dfg~~~~~  147 (279)
T cd05633          79 MNGGDLHYHLSQHG---VFSEKEMRFYATEIILGLEHMHNR---FVVYRDLKPANILLDEHGHVRISDLGLACDF  147 (279)
T ss_pred             CCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CcCCCCCCHHHEEECCCCCEEEccCCcceec
Confidence            45789998887654   588999999999999999999988   9999999999999999999999999987644

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=99.35  E-value=6.9e-12  Score=76.20  Aligned_cols=70  Identities=26%  Similarity=0.438  Sum_probs=62.1

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +.+++|.+++....   .+++.....++.|++.++.|+|..   +++|+|+++.|++++....+++.|||+++...
T Consensus        86 ~~g~~L~~li~~~~---~l~~~~~~~i~~qil~aL~yLH~~---gIiHrDLKP~NILl~~~g~vkL~DFGls~~~~  155 (669)
T cd05610          86 LIGGDVKSLLHIYG---YFDEEMAVKYISEVALALDYLHRH---GIIHRDLKPDNMLISNEGHIKLTDFGLSKVTL  155 (669)
T ss_pred             CCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CEEeCCccHHHEEEcCCCCEEEEeCCCCcccc
Confidence            35789999987654   578888899999999999999988   99999999999999988999999999987654

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=99.35  E-value=1e-11  Score=68.95  Aligned_cols=72  Identities=31%  Similarity=0.496  Sum_probs=59.9

Q ss_pred             CCCCcHHHHHhcCCC----------------cccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcE
Q 040123            1 MERGSLFCVLRDDDE----------------AIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEA   64 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~----------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~   64 (84)
                      +++|+|.+++.....                ...+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+
T Consensus       101 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~---~ivH~dlkp~Nill~~~~~~  177 (304)
T cd05096         101 MENGDLNQFLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYLSSL---NFVHRDLATRNCLVGENLTI  177 (304)
T ss_pred             CCCCcHHHHHHhccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHC---CccccCcchhheEEcCCccE
Confidence            357889888865321                11356778889999999999999988   99999999999999999999


Q ss_pred             EEcccccceec
Q 040123           65 SVADFGTARLL   75 (84)
Q Consensus        65 ~i~~~g~~~~~   75 (84)
                      ++.|||++..+
T Consensus       178 kl~DfG~~~~~  188 (304)
T cd05096         178 KIADFGMSRNL  188 (304)
T ss_pred             EECCCccceec
Confidence            99999998754

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=99.35  E-value=1e-11  Score=69.67  Aligned_cols=68  Identities=29%  Similarity=0.430  Sum_probs=59.7

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      +++|+|..++...    .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++...
T Consensus        84 ~~~~~L~~~~~~~----~l~~~~~~~~~~qi~~al~~lH~~---~ivHrdlkp~Nill~~~~~~kL~Dfg~~~~~  151 (324)
T cd05589          84 AAGGDLMMHIHTD----VFSEPRAVFYAACVVLGLQYLHEN---KIVYRDLKLDNLLLDTEGFVKIADFGLCKEG  151 (324)
T ss_pred             CCCCcHHHHhhcC----CCCHHHHHHHHHHHHHHHHHHHhC---CeEecCCCHHHeEECCCCcEEeCcccCCccC
Confidence            3578888877542    488999999999999999999988   9999999999999999999999999987643

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.35  E-value=1.2e-11  Score=67.00  Aligned_cols=71  Identities=23%  Similarity=0.342  Sum_probs=60.8

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCC-------cEEEcccccce
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNL-------EASVADFGTAR   73 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-------~~~i~~~g~~~   73 (84)
                      +++|+|.+++.....  .++......++.|++.++.|+|..   +++|+|+++.|++++...       .+++.|||++.
T Consensus        82 ~~~~~L~~~l~~~~~--~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~dlkp~Nill~~~~~~~~~~~~~kl~Dfg~a~  156 (259)
T cd05037          82 VKFGPLDVFLHREKN--NVSLHWKLDVAKQLASALHYLEDK---KLVHGNVCGKNILVARYGLNEGYVPFIKLSDPGIPI  156 (259)
T ss_pred             CCCCcHHHHHHhhcc--CCCHHHHHHHHHHHHHHHHHHhhC---CeecccCccceEEEecCccccCCceeEEeCCCCccc
Confidence            357899999986543  478888889999999999999988   999999999999998766       68999999887


Q ss_pred             ecc
Q 040123           74 LLH   76 (84)
Q Consensus        74 ~~~   76 (84)
                      .+.
T Consensus       157 ~~~  159 (259)
T cd05037         157 TVL  159 (259)
T ss_pred             ccc
Confidence            643

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.34  E-value=1.5e-11  Score=67.66  Aligned_cols=70  Identities=23%  Similarity=0.488  Sum_probs=61.4

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      ++++|.+++.+...  .+++.....++.+++.++.|+|..   +++|+++++.|++++.+..+++.|||++..+.
T Consensus        91 ~g~~L~~~l~~~~~--~~~~~~~~~i~~~i~~aL~~lH~~---gi~H~dlkp~Nil~~~~~~~~l~dfg~~~~~~  160 (284)
T cd05079          91 PSGSLKEYLPRNKN--KINLKQQLKYAVQICKGMDYLGSR---QYVHRDLAARNVLVESEHQVKIGDFGLTKAIE  160 (284)
T ss_pred             CCCCHHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHHC---CeeecccchheEEEcCCCCEEECCCccccccc
Confidence            57899999865432  478889999999999999999988   99999999999999998999999999887654

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=99.34  E-value=1.5e-11  Score=67.61  Aligned_cols=69  Identities=26%  Similarity=0.316  Sum_probs=61.1

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      +++|+|..++....   .+++..+..++.|++.++.|+|..   +++|+|+++.|++++.+..++++|||++..+
T Consensus        79 ~~g~~L~~~l~~~~---~l~~~~~~~~~~ql~~~l~~lH~~---~i~H~di~p~nili~~~~~~kl~dfg~~~~~  147 (278)
T cd05606          79 MNGGDLHYHLSQHG---VFSEAEMRFYAAEIILGLEHMHNR---FVVYRDLKPANILLDEHGHVRISDLGLACDF  147 (278)
T ss_pred             CCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CEEcCCCCHHHEEECCCCCEEEccCcCcccc
Confidence            35789988887543   588999999999999999999988   9999999999999999999999999987644

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=99.34  E-value=1.3e-11  Score=67.08  Aligned_cols=70  Identities=29%  Similarity=0.490  Sum_probs=61.7

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      ++++|.+++.....  .+++.....++.|++.++.|+|..   +++|+++++.|++++.+..+++.|||+++...
T Consensus        82 ~~~~L~~~l~~~~~--~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dl~p~ni~i~~~~~~kl~dfg~~~~~~  151 (256)
T cd05059          82 ANGCLLNYLRERKG--KLGTEWLLDMCSDVCEAMEYLESN---GFIHRDLAARNCLVGEDNVVKVSDFGLARYVL  151 (256)
T ss_pred             CCCCHHHHHHhccc--CCCHHHHHHHHHHHHHHHHHHHHC---CcccccccHhhEEECCCCcEEECCcccceecc
Confidence            57899999876543  578889999999999999999988   99999999999999999999999999886543

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=99.33  E-value=1.3e-11  Score=67.39  Aligned_cols=71  Identities=25%  Similarity=0.313  Sum_probs=59.5

Q ss_pred             CCCCcHHHHHhcCCC--cccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEccccccee
Q 040123            1 MERGSLFCVLRDDDE--AIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARL   74 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~   74 (84)
                      +++|+|.+++.....  .....+.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++..
T Consensus        77 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nill~~~~~~kl~dfg~~~~  149 (269)
T cd05042          77 CPLGDLKNYLRSNRGMVAQMAQKDVLQRMACEVASGLLWLHQA---DFIHSDLALRNCQLTADLSVKIGDYGLALE  149 (269)
T ss_pred             CCCCcHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHhc---CEecccccHhheEecCCCcEEEeccccccc
Confidence            357899999986542  11245667788899999999999988   999999999999999999999999998754

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=99.33  E-value=2.2e-12  Score=76.71  Aligned_cols=73  Identities=32%  Similarity=0.524  Sum_probs=64.9

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccCCC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDS   79 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~~~   79 (84)
                      |..|.|...|+...   .+....++.|..+|+.++.|+|..   .++|+|++..||++..+..+||.|||.++.+....
T Consensus       194 Ca~GqL~~VLka~~---~itp~llv~Wsk~IA~GM~YLH~h---KIIHRDLKSPNiLIs~~d~VKIsDFGTS~e~~~~S  266 (904)
T KOG4721|consen  194 CAQGQLYEVLKAGR---PITPSLLVDWSKGIAGGMNYLHLH---KIIHRDLKSPNILISYDDVVKISDFGTSKELSDKS  266 (904)
T ss_pred             cccccHHHHHhccC---ccCHHHHHHHHHHhhhhhHHHHHh---hHhhhccCCCceEeeccceEEeccccchHhhhhhh
Confidence            45688999998765   688899999999999999999988   99999999999999999999999999988766543

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=99.33  E-value=2.1e-11  Score=67.25  Aligned_cols=72  Identities=25%  Similarity=0.324  Sum_probs=61.9

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++|+|.+++..... ..+++.....++.|++.++.|+|..   +++|+++++.|++++....+++.|||++..+.
T Consensus        82 ~~~~~L~~~~~~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~~l~Dfg~~~~~~  153 (285)
T cd05605          82 MNGGDLKFHIYNMGN-PGFDEERAVFYAAEITCGLEDLHRE---RIVYRDLKPENILLDDYGHIRISDLGLAVEIP  153 (285)
T ss_pred             cCCCcHHHHHHhcCc-CCCCHHHHHHHHHHHHHHHHHHHHC---CcEecCCCHHHEEECCCCCEEEeeCCCceecC
Confidence            457899888865432 2488899999999999999999988   99999999999999999999999999887653

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=99.33  E-value=4.3e-12  Score=75.49  Aligned_cols=75  Identities=32%  Similarity=0.463  Sum_probs=63.8

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccCCC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDS   79 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~~~   79 (84)
                      |++|||.+|+..+..+. ..-.....++.|++.++.|+.+.   +++|+|+.+.|++.+....+||.|||.++.+-..+
T Consensus       617 mEnGDLnqFl~aheapt-~~t~~~vsi~tqiasgmaYLes~---nfVHrd~a~rNcLv~~e~~iKiadfgmsR~lysg~  691 (807)
T KOG1094|consen  617 MENGDLNQFLSAHELPT-AETAPGVSICTQIASGMAYLESL---NFVHRDLATRNCLVDGEFTIKIADFGMSRNLYSGD  691 (807)
T ss_pred             HhcCcHHHHHHhccCcc-cccchhHHHHHHHHHHHHHHHhh---chhhccccccceeecCcccEEecCcccccccccCC
Confidence            68999999999875432 34456677999999999999988   99999999999999999999999999998654433

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=99.33  E-value=3e-11  Score=65.84  Aligned_cols=71  Identities=31%  Similarity=0.518  Sum_probs=61.7

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      ++++|.+++...... .+++.....++.|++.++.++|..   +++|+++++.|+++..+..+++.|||++....
T Consensus        85 ~~~~L~~~~~~~~~~-~l~~~~~~~~~~ql~~~l~~lH~~---~i~H~dlkp~nil~~~~~~~kl~df~~~~~~~  155 (263)
T cd05052          85 TYGNLLDYLRECNRQ-EVNAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMT  155 (263)
T ss_pred             CCCcHHHHHHhCCCC-CCCHHHHHHHHHHHHHHHHHHHhC---CEeecccCcceEEEcCCCcEEeCCCccccccc
Confidence            578999998764322 478888899999999999999988   99999999999999999999999999887654

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=99.33  E-value=1.2e-11  Score=69.36  Aligned_cols=67  Identities=30%  Similarity=0.531  Sum_probs=59.3

Q ss_pred             CCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            3 RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         3 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      +++|.+++....   .+++.....++.|++.|+.|+|+.   +++|+|+++.|++++.+..+++.|||++...
T Consensus        87 ~~~L~~~l~~~~---~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIll~~~~~~kL~Dfg~~~~~  153 (338)
T cd07859          87 ESDLHQVIKAND---DLTPEHHQFFLYQLLRALKYIHTA---NVFHRDLKPKNILANADCKLKICDFGLARVA  153 (338)
T ss_pred             CCCHHHHHHhcc---cCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEECCCCcEEEccCcccccc
Confidence            467888887544   588899999999999999999988   9999999999999999999999999998754

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=99.33  E-value=3.3e-11  Score=65.51  Aligned_cols=70  Identities=27%  Similarity=0.504  Sum_probs=61.5

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      ++|+|.+++.....  .+++.....++.|++.++.|+|..   +++|+++++.|++++.+..+++.|||.++...
T Consensus        82 ~~~~l~~~i~~~~~--~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~nili~~~~~~kl~d~g~~~~~~  151 (256)
T cd05113          82 SNGCLLNYLREHGK--RFQPSQLLEMCKDVCEGMAYLESK---QFIHRDLAARNCLVDDQGCVKVSDFGLSRYVL  151 (256)
T ss_pred             CCCcHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHhC---CeeccccCcceEEEcCCCCEEECCCccceecC
Confidence            57889999876433  578899999999999999999988   99999999999999998999999999887553

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=99.32  E-value=5e-12  Score=77.59  Aligned_cols=75  Identities=27%  Similarity=0.502  Sum_probs=68.3

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccCCCC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSS   80 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~~~~   80 (84)
                      |+.|.|.+|++.+.+  .+..+.+..|+.||+.|+.|+|..   .++|+++-++|+++......|+.|||+++.+.++..
T Consensus       779 mP~G~LlDyvr~hr~--~igsq~lLnw~~QIAkgM~YLe~q---rlVHrdLaaRNVLVksP~hvkitdfgla~ll~~d~~  853 (1177)
T KOG1025|consen  779 MPLGCLLDYVREHRD--NIGSQDLLNWCYQIAKGMKYLEEQ---RLVHRDLAARNVLVKSPNHVKITDFGLAKLLAPDEK  853 (1177)
T ss_pred             cccchHHHHHHHhhc--cccHHHHHHHHHHHHHHHHHHHhc---chhhhhhhhhheeecCCCeEEEEecchhhccCcccc
Confidence            678999999998776  688899999999999999999988   999999999999999999999999999988766543

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=99.32  E-value=4.6e-12  Score=70.40  Aligned_cols=57  Identities=28%  Similarity=0.424  Sum_probs=53.3

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123           18 ELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus        18 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      -+++.....++.|++.++.|||..   +++|+|++++||++..+..+|+.|||+|+.+..
T Consensus        97 G~~~~~vk~~l~Q~l~ai~~cHk~---n~IHRDIKPENILit~~gvvKLCDFGFAR~L~~  153 (396)
T KOG0593|consen   97 GVPSELVKKYLYQLLKAIHFCHKN---NCIHRDIKPENILITQNGVVKLCDFGFARTLSA  153 (396)
T ss_pred             CCCHHHHHHHHHHHHHHhhhhhhc---CeecccCChhheEEecCCcEEeccchhhHhhcC
Confidence            377888999999999999999988   999999999999999999999999999998874

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=99.32  E-value=4.2e-11  Score=65.18  Aligned_cols=71  Identities=34%  Similarity=0.590  Sum_probs=61.4

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      ++|+|.+++..... ..+++.....++.+++.++.|+|..   +++|+|+++.|++++.+..+++.|||++....
T Consensus        83 ~~~~L~~~~~~~~~-~~~~~~~~~~~~~~l~~al~~lH~~---~i~H~dl~~~Nill~~~~~~~l~dfg~~~~~~  153 (260)
T cd05069          83 GKGSLLDFLKEGDG-KYLKLPQLVDMAAQIADGMAYIERM---NYIHRDLRAANILVGDNLVCKIADFGLARLIE  153 (260)
T ss_pred             CCCCHHHHHhhCCC-CCCCHHHHHHHHHHHHHHHHHHHhC---CEeecccCcceEEEcCCCeEEECCCccceEcc
Confidence            57899999976432 2478888899999999999999988   99999999999999999999999999987653

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=99.32  E-value=2.7e-11  Score=66.63  Aligned_cols=72  Identities=25%  Similarity=0.336  Sum_probs=60.9

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++|+|.+++..... ..+++.....++.|++.++.|+|..   +++|+++++.|++++.+..+++.|||++....
T Consensus        75 ~~g~~L~~~~~~~~~-~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~dikp~Nili~~~~~~~l~Dfg~~~~~~  146 (277)
T cd05607          75 MNGGDLKYHIYNVGE-RGLEMERVIHYSAQITCGILHLHSM---DIVYRDMKPENVLLDDQGNCRLSDLGLAVELK  146 (277)
T ss_pred             CCCCCHHHHHHhccc-cCCCHHHHHHHHHHHHHHHHHHHHC---CEEEccCChHhEEEcCCCCEEEeeceeeeecC
Confidence            357889888764432 2477888888999999999999988   99999999999999999999999999887654

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=99.32  E-value=2.8e-11  Score=65.69  Aligned_cols=69  Identities=30%  Similarity=0.503  Sum_probs=61.8

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      ++|+|.+++.+..   .+++.....++.|++.++.++|..   +++|+++++.|++++.+..+++.|||++..+.
T Consensus        78 ~~~~L~~~l~~~~---~~~~~~~~~~~~qi~~~l~~lh~~---~i~H~di~p~nili~~~~~~kl~df~~~~~~~  146 (257)
T cd05060          78 PLGPLLKYLKKRR---EIPVSDLKELAHQVAMGMAYLESK---HFVHRDLAARNVLLVNRHQAKISDFGMSRALG  146 (257)
T ss_pred             CCCcHHHHHHhCC---CCCHHHHHHHHHHHHHHHHHHhhc---CeeccCcccceEEEcCCCcEEeccccccceee
Confidence            5789999998655   588899999999999999999988   99999999999999999999999999887553

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.31  E-value=5.4e-12  Score=67.97  Aligned_cols=69  Identities=33%  Similarity=0.510  Sum_probs=60.3

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEccccccee
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARL   74 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~   74 (84)
                      .+|++...|...... .+.+.....++.|++.|+.|||.+   +++|+|+++.|+++.....+++.|||++-.
T Consensus       105 ~~gel~k~L~~~~~~-~f~e~~~a~Yi~q~A~Al~y~h~k---~VIhRdiKpenlLlg~~~~lkiAdfGwsV~  173 (281)
T KOG0580|consen  105 PRGELYKDLQEGRMK-RFDEQRAATYIKQLANALLYCHLK---RVIHRDIKPENLLLGSAGELKIADFGWSVH  173 (281)
T ss_pred             CCchHHHHHHhcccc-cccccchhHHHHHHHHHHHHhccC---CcccCCCCHHHhccCCCCCeeccCCCceee
Confidence            368888888843322 588899999999999999999998   999999999999999999999999998754

>PHA03212 serine/threonine kinase US3; Provisional

Probab=99.31  E-value=1.7e-11  Score=70.49  Aligned_cols=67  Identities=30%  Similarity=0.606  Sum_probs=58.6

Q ss_pred             CCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            3 RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         3 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      +++|..++....   .+++.....++.|++.++.|+|..   +++|+|+++.|++++....+++.|||++...
T Consensus       166 ~~~L~~~l~~~~---~l~~~~~~~i~~qi~~aL~ylH~~---~IvHrDiKP~NIll~~~~~vkL~DFG~a~~~  232 (391)
T PHA03212        166 KTDLYCYLAAKR---NIAICDILAIERSVLRAIQYLHEN---RIIHRDIKAENIFINHPGDVCLGDFGAACFP  232 (391)
T ss_pred             CCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCChHhEEEcCCCCEEEEeCCccccc
Confidence            467777776544   478888999999999999999988   9999999999999999999999999998643

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=99.31  E-value=2e-11  Score=67.45  Aligned_cols=67  Identities=27%  Similarity=0.388  Sum_probs=58.4

Q ss_pred             CcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            4 GSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         4 g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      |+|.+++.....  .++......++.|++.++.|+|+.   +++|+|+++.|++++.+..+++.|||++...
T Consensus        87 ~~l~~~l~~~~~--~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~dlkp~Nil~~~~~~~kl~DfG~~~~~  153 (288)
T cd07871          87 SDLKQYLDNCGN--LMSMHNVKIFMFQLLRGLSYCHKR---KILHRDLKPQNLLINEKGELKLADFGLARAK  153 (288)
T ss_pred             cCHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEECCCCCEEECcCcceeec
Confidence            578888765443  467888889999999999999988   9999999999999999999999999988654

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=99.31  E-value=2.2e-11  Score=67.20  Aligned_cols=72  Identities=26%  Similarity=0.339  Sum_probs=61.6

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++|+|.+++..... ..+++.....++.|++.++.|+|..   +++|+++++.|++++.+..+++.|||++....
T Consensus        82 ~~g~~L~~~l~~~~~-~~l~~~~~~~~~~qi~~~l~~lH~~---~iiH~dikp~Nil~~~~~~~~l~Dfg~~~~~~  153 (285)
T cd05630          82 MNGGDLKFHIYHMGE-AGFEEGRAVFYAAEICCGLEDLHQE---RIVYRDLKPENILLDDHGHIRISDLGLAVHVP  153 (285)
T ss_pred             cCCCcHHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHhC---CEEeCCCCHHHEEECCCCCEEEeeccceeecC
Confidence            357899988865432 2478888999999999999999988   99999999999999999999999999886543

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.31  E-value=2.3e-12  Score=77.51  Aligned_cols=75  Identities=31%  Similarity=0.495  Sum_probs=66.2

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccCCC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDS   79 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~~~   79 (84)
                      |..|.|.+||++.... .++...++.++.||.+++.|+..+   +++|+|+.++|+++..+..+|+.|||+++.++.+.
T Consensus       345 M~yGNLLdYLRecnr~-ev~avvLlyMAtQIsSaMeYLEkk---nFIHRDLAARNCLVgEnhiVKvADFGLsRlMtgDT  419 (1157)
T KOG4278|consen  345 MCYGNLLDYLRECNRS-EVPAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHIVKVADFGLSRLMTGDT  419 (1157)
T ss_pred             ccCccHHHHHHHhchh-hcchhHHHHHHHHHHHHHHHHHHh---hhhhhhhhhhhccccccceEEeeccchhhhhcCCc
Confidence            6689999999986543 466777888899999999999988   99999999999999999999999999999887543

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=99.31  E-value=3e-11  Score=66.57  Aligned_cols=70  Identities=29%  Similarity=0.407  Sum_probs=59.7

Q ss_pred             CCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            3 RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         3 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      .++|.+++...... .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++....
T Consensus        92 ~~~l~~~~~~~~~~-~~~~~~~~~i~~qi~~aL~~lH~~---~iiH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~  161 (290)
T cd07862          92 DQDLTTYLDKVPEP-GVPTETIKDMMFQLLRGLDFLHSH---RVVHRDLKPQNILVTSSGQIKLADFGLARIYS  161 (290)
T ss_pred             CCCHHHHHHhCCCC-CCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHHHEEEcCCCCEEEccccceEecc
Confidence            35777777654322 478889999999999999999988   99999999999999999999999999987654

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=99.31  E-value=3.6e-11  Score=67.64  Aligned_cols=71  Identities=30%  Similarity=0.444  Sum_probs=61.1

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++|+|.+++....   .+++.....++.|++.++.|+|..  .+++|+|+++.|++++.+..+++.|||++..+.
T Consensus        85 ~~~~~L~~~l~~~~---~~~~~~~~~~~~~i~~~l~~lH~~--~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~  155 (331)
T cd06649          85 MDGGSLDQVLKEAK---RIPEEILGKVSIAVLRGLAYLREK--HQIMHRDVKPSNILVNSRGEIKLCDFGVSGQLI  155 (331)
T ss_pred             CCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHhhc--CCEEcCCCChhhEEEcCCCcEEEccCccccccc
Confidence            45789999987654   578889999999999999999974  159999999999999999999999999887553

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=99.31  E-value=3.1e-11  Score=67.05  Aligned_cols=68  Identities=26%  Similarity=0.378  Sum_probs=58.8

Q ss_pred             CCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            3 RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         3 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      .++|.+++.....  .+++..+..++.|++.++.|+|+.   +++|+|+++.|++++.+..+++.|||++...
T Consensus        86 ~~~l~~~~~~~~~--~~~~~~~~~~~~qi~~al~~lH~~---~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~  153 (303)
T cd07869          86 HTDLCQYMDKHPG--GLHPENVKLFLFQLLRGLSYIHQR---YILHRDLKPQNLLISDTGELKLADFGLARAK  153 (303)
T ss_pred             CcCHHHHHHhCCC--CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEECCCCCEEECCCCcceec
Confidence            4677777765433  478888899999999999999988   9999999999999999999999999987653

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=99.30  E-value=3.2e-11  Score=68.98  Aligned_cols=56  Identities=32%  Similarity=0.509  Sum_probs=50.2

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123           18 ELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus        18 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++..+.
T Consensus       210 ~l~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~Nill~~~~~~kl~DfG~a~~~~  265 (375)
T cd05104         210 ALDTEDLLSFSYQVAKGMSFLASK---NCIHRDLAARNILLTHGRITKICDFGLARDIR  265 (375)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCchhhEEEECCCcEEEecCccceecc
Confidence            356777888999999999999988   99999999999999988899999999987654

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=99.30  E-value=3.6e-11  Score=65.34  Aligned_cols=69  Identities=30%  Similarity=0.493  Sum_probs=59.1

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      .+|+|.+++.+...  .........++.|++.++.|+|..   +++|+++++.|++++....+++.|||++..+
T Consensus        80 ~~~~L~~~~~~~~~--~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlk~~nili~~~~~~kl~dfg~~~~~  148 (262)
T cd05058          80 KHGDLRNFIRSETH--NPTVKDLIGFGLQVAKGMEYLASK---KFVHRDLAARNCMLDESFTVKVADFGLARDI  148 (262)
T ss_pred             CCCCHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHhC---CccccccCcceEEEcCCCcEEECCccccccc
Confidence            56899999875432  356677788889999999999988   9999999999999999899999999988654

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=99.30  E-value=4.1e-11  Score=65.44  Aligned_cols=71  Identities=38%  Similarity=0.643  Sum_probs=61.9

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++|+|.+++.....  .++......++.|++.++.++|..   +++|+++++.|++++.+...++.|||++..+.
T Consensus        87 ~~~~~L~~~~~~~~~--~~~~~~~~~i~~~i~~~l~~lH~~---~i~h~dlkp~nili~~~~~~~l~dfg~~~~~~  157 (267)
T cd05066          87 MENGSLDAFLRKHDG--QFTVIQLVGMLRGIASGMKYLSDM---GYVHRDLAARNILVNSNLVCKVSDFGLSRVLE  157 (267)
T ss_pred             CCCCCHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHHC---CEeehhhchhcEEECCCCeEEeCCCCcccccc
Confidence            357899999976543  578888899999999999999988   99999999999999988899999999887654

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=99.30  E-value=2.3e-11  Score=69.57  Aligned_cols=55  Identities=29%  Similarity=0.521  Sum_probs=49.9

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123           18 ELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus        18 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++..+
T Consensus       208 ~l~~~~~~~i~~qi~~aL~yLH~~---giiHrDLkp~Nil~~~~~~~kL~DfGla~~~  262 (374)
T cd05106         208 PLDLDDLLRFSSQVAQGMDFLASK---NCIHRDVAARNVLLTDGRVAKICDFGLARDI  262 (374)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHC---CEEeccCchheEEEeCCCeEEEeeceeeeec
Confidence            366778889999999999999988   9999999999999998889999999998754

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>PHA03209 serine/threonine kinase US3; Provisional

Probab=99.30  E-value=2.4e-11  Score=69.04  Aligned_cols=67  Identities=25%  Similarity=0.507  Sum_probs=59.0

Q ss_pred             CCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEccccccee
Q 040123            3 RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARL   74 (84)
Q Consensus         3 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~   74 (84)
                      .|+|.+++.....  .+++.....++.|++.++.|+|..   +++|+|+++.|+++.....+++.|||++..
T Consensus       140 ~~~l~~~l~~~~~--~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DfG~a~~  206 (357)
T PHA03209        140 SSDLYTYLTKRSR--PLPIDQALIIEKQILEGLRYLHAQ---RIIHRDVKTENIFINDVDQVCIGDLGAAQF  206 (357)
T ss_pred             CCcHHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEECCCCCEEEecCccccc
Confidence            4678888865433  588999999999999999999988   999999999999999999999999998864

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=99.30  E-value=3.9e-11  Score=66.22  Aligned_cols=71  Identities=24%  Similarity=0.305  Sum_probs=60.9

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      +++|+|.+++..... ..+++.....++.|++.++.|+|..   +++|+|+++.|++++....+++.|||++...
T Consensus        82 ~~~~~L~~~~~~~~~-~~~~~~~~~~~~~ql~~~l~~lH~~---~iiH~dikp~Nili~~~~~~kl~Dfg~~~~~  152 (285)
T cd05632          82 MNGGDLKFHIYNMGN-PGFEEERALFYAAEILCGLEDLHRE---NTVYRDLKPENILLDDYGHIRISDLGLAVKI  152 (285)
T ss_pred             ccCccHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHhC---CeeecCCCHHHEEECCCCCEEEecCCcceec
Confidence            357888888765432 2588999999999999999999988   9999999999999998889999999988654

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.30  E-value=3.2e-11  Score=66.32  Aligned_cols=68  Identities=29%  Similarity=0.520  Sum_probs=60.6

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      ++|+|.+++...    .+++.....++.|++.++.|+|..   +++|+++++.|++++.+..+++.|||++..+.
T Consensus        91 ~~~~l~~~~~~~----~l~~~~~~~i~~~l~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~  158 (283)
T cd05080          91 PLGSLRDYLPKH----KLNLAQLLLFAQQICEGMAYLHSQ---HYIHRDLAARNVLLDNDRLVKIGDFGLAKAVP  158 (283)
T ss_pred             CCCCHHHHHHHc----CCCHHHHHHHHHHHHHHHHHHHHC---CeeccccChheEEEcCCCcEEEeecccccccC
Confidence            578898888753    488999999999999999999988   99999999999999999999999999887654

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=99.30  E-value=5.3e-11  Score=65.01  Aligned_cols=70  Identities=36%  Similarity=0.636  Sum_probs=61.2

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      ++|+|.+++....+  .+++.....++.|++.++.++|..   +++|+++++.|++++.+..+++.|||++..+.
T Consensus        88 ~~~~L~~~l~~~~~--~~~~~~~~~i~~~l~~al~~lH~~---g~~H~dl~p~nili~~~~~~kl~dfg~~~~~~  157 (269)
T cd05065          88 ENGALDSFLRQNDG--QFTVIQLVGMLRGIAAGMKYLSEM---NYVHRDLAARNILVNSNLVCKVSDFGLSRFLE  157 (269)
T ss_pred             CCCcHHHHHhhCCC--CCCHHHHHHHHHHHHHHHHHHHHC---CEeecccChheEEEcCCCcEEECCCccccccc
Confidence            57899999876443  578888999999999999999988   99999999999999988899999999876553

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=99.30  E-value=3.3e-11  Score=65.88  Aligned_cols=69  Identities=20%  Similarity=0.408  Sum_probs=60.4

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEccccccee
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARL   74 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~   74 (84)
                      +++|+|.+++.....  .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||.+..
T Consensus        88 ~~~~~L~~~l~~~~~--~l~~~~~~~~~~~i~~al~~lH~~---~iiH~dikp~nili~~~~~~~l~dfg~~~~  156 (266)
T cd05064          88 MSNGALDSFLRKHEG--QLVAGQLMGMLPGLASGMKYLSEM---GYVHKGLAAHKVLVNSDLVCKISGFRRLQE  156 (266)
T ss_pred             CCCCcHHHHHHhCCC--CCCHHHHHHHHHHHHHHHHHHHHC---CEeeccccHhhEEEcCCCcEEECCCccccc
Confidence            357899999876433  578899999999999999999988   999999999999999999999999997544

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>PHA03211 serine/threonine kinase US3; Provisional

Probab=99.30  E-value=3e-11  Score=70.86  Aligned_cols=69  Identities=25%  Similarity=0.515  Sum_probs=60.1

Q ss_pred             CCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            3 RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         3 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      .++|..++.....  .+++.....++.|++.++.|+|..   +++|+|+++.|++++....+++.|||++..+.
T Consensus       243 ~~~L~~~l~~~~~--~l~~~~~~~i~~qi~~aL~yLH~~---gIvHrDLKP~NILl~~~~~vkL~DFGla~~~~  311 (461)
T PHA03211        243 RSDLYTYLGARLR--PLGLAQVTAVARQLLSAIDYIHGE---GIIHRDIKTENVLVNGPEDICLGDFGAACFAR  311 (461)
T ss_pred             CCCHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHHC---CEEECcCCHHHEEECCCCCEEEcccCCceecc
Confidence            3677887765432  588999999999999999999988   99999999999999998999999999987654

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=99.29  E-value=4.6e-11  Score=65.15  Aligned_cols=72  Identities=36%  Similarity=0.577  Sum_probs=61.8

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++|+|.+++.+.... .+++.....++.+++.++.++|..   +++|+++++.|+++..+..+++.|||.+..+.
T Consensus        82 ~~~~~L~~~~~~~~~~-~~~~~~~~~~~~~l~~aL~~lH~~---~i~H~dl~p~Nill~~~~~~~L~dfg~~~~~~  153 (262)
T cd05071          82 MSKGSLLDFLKGEMGK-YLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIE  153 (262)
T ss_pred             CCCCcHHHHHhhcccc-CCCHHHHHHHHHHHHHHHHHHHHC---CccccccCcccEEEcCCCcEEeccCCceeecc
Confidence            3578999999764322 477888899999999999999988   99999999999999998899999999887654

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=99.29  E-value=4e-11  Score=65.20  Aligned_cols=72  Identities=29%  Similarity=0.600  Sum_probs=61.9

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++|+|.+++...... .++......++.+++.++.|+|..   +++|+++++.|++++.+..+++.|||++....
T Consensus        83 ~~~~~L~~~l~~~~~~-~~~~~~~~~~~~~l~~~l~~LH~~---~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~  154 (261)
T cd05072          83 MAKGSLLDFLKSDEGG-KVLLPKLIDFSAQIAEGMAYIERK---NYIHRDLRAANVLVSESLMCKIADFGLARVIE  154 (261)
T ss_pred             CCCCcHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHHHC---CeeccccchhhEEecCCCcEEECCCccceecC
Confidence            3578999998754322 477888888999999999999988   99999999999999999999999999987654

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=99.29  E-value=4.5e-11  Score=64.90  Aligned_cols=69  Identities=30%  Similarity=0.533  Sum_probs=60.6

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      ++|+|.+++....+  .+++.....++.+++.++.|+|..   +++|+++++.|++++.+..+++.|||.+...
T Consensus        82 ~~~~L~~~~~~~~~--~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~ni~i~~~~~~kl~d~g~~~~~  150 (256)
T cd05114          82 ENGCLLNYLRQRQG--KLSKDMLLSMCQDVCEGMEYLERN---SFIHRDLAARNCLVSSTGVVKVSDFGMTRYV  150 (256)
T ss_pred             CCCcHHHHHHhCcc--CCCHHHHHHHHHHHHHHHHHHHHC---CccccccCcceEEEcCCCeEEECCCCCcccc
Confidence            57899998875433  478888999999999999999988   9999999999999999999999999987654

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.29  E-value=1.1e-11  Score=75.39  Aligned_cols=72  Identities=31%  Similarity=0.511  Sum_probs=62.8

Q ss_pred             CCCCcHHHHHhcCCC-----------cccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEccc
Q 040123            1 MERGSLFCVLRDDDE-----------AIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADF   69 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~-----------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~   69 (84)
                      |..|||..||+.+.+           +..++..+...++.||+.|+.|+-+.   .++|+||-++|+++..+..+||+||
T Consensus       571 m~~GDL~eFLra~sP~a~~~~~g~~~~~~L~~~q~L~iA~QIAaGM~YLs~~---~FVHRDLATRNCLVge~l~VKIsDf  647 (774)
T KOG1026|consen  571 MDHGDLHEFLRARSPKADKLASGQDTPPPLSTSQFLHIATQIAAGMEYLSSH---HFVHRDLATRNCLVGENLVVKISDF  647 (774)
T ss_pred             cccccHHHHHHhhCCccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhC---cccccchhhhhceeccceEEEeccc
Confidence            568999999996553           11267788999999999999999988   9999999999999999999999999


Q ss_pred             ccceec
Q 040123           70 GTARLL   75 (84)
Q Consensus        70 g~~~~~   75 (84)
                      |+++-+
T Consensus       648 GLsRdi  653 (774)
T KOG1026|consen  648 GLSRDI  653 (774)
T ss_pred             ccchhh
Confidence            998743

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=99.29  E-value=3.4e-11  Score=66.41  Aligned_cols=70  Identities=30%  Similarity=0.438  Sum_probs=61.5

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++++|.+++....   .+++.....++.|++.++.++|..   +++|+++++.|++++.+..+++.|||++....
T Consensus        87 ~~~~~L~~~l~~~~---~l~~~~~~~~~~qi~~al~~lH~~---~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~  156 (290)
T cd05613          87 INGGELFTHLSQRE---RFKEQEVQIYSGEIVLALEHLHKL---GIIYRDIKLENILLDSNGHVVLTDFGLSKEFH  156 (290)
T ss_pred             CCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHeEECCCCCEEEeeCccceecc
Confidence            46789999987654   578888888899999999999988   99999999999999999999999999887653

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=99.29  E-value=4e-11  Score=64.91  Aligned_cols=69  Identities=25%  Similarity=0.481  Sum_probs=60.4

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      ++++|.+++.....  .+++.....++.|++.++.|+|..   +++|+++++.|++++.+..+++.|||++...
T Consensus        76 ~~~~L~~~~~~~~~--~~~~~~~~~~~~qi~~~L~~lH~~---~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~  144 (252)
T cd05084          76 QGGDFLTFLRTEGP--RLKVKELIQMVENAAAGMEYLESK---HCIHRDLAARNCLVTEKNVLKISDFGMSREE  144 (252)
T ss_pred             cCCcHHHHHHhCCC--CCCHHHHHHHHHHHHHHHHHHHhC---CccccccchheEEEcCCCcEEECccccCccc
Confidence            57899999875443  478888999999999999999988   9999999999999998889999999987643

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=99.29  E-value=4.8e-11  Score=65.07  Aligned_cols=70  Identities=37%  Similarity=0.614  Sum_probs=62.1

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      ++|+|.+++....+  .+++.....++.|++.++.++|..   +++|+++++.|++++.+...++.|||++..+.
T Consensus        88 ~~~~L~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~Lh~~---~i~H~di~p~nili~~~~~~~l~dfg~~~~~~  157 (266)
T cd05033          88 ENGSLDKFLRENDG--KFTVGQLVGMLRGIASGMKYLSEM---NYVHRDLAARNILVNSNLVCKVSDFGLSRRLE  157 (266)
T ss_pred             CCCCHHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCcceEEEcCCCCEEECccchhhccc
Confidence            57899999876543  578899999999999999999988   99999999999999999999999999887664

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=99.29  E-value=9.2e-11  Score=63.62  Aligned_cols=71  Identities=34%  Similarity=0.511  Sum_probs=61.2

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      +++|+|.+++...... .++......++.|++.++.++|..   +++|+|+++.|++++.+..+++.|||.+...
T Consensus        80 ~~~~~L~~~l~~~~~~-~~~~~~~~~~~~qi~~al~~lH~~---~~~H~dl~p~nili~~~~~~kl~Dfg~~~~~  150 (254)
T cd05083          80 MSKGNLVNFLRTRGRA-LVSVIQLLQFSLDVAEGMEYLESK---KLVHRDLAARNILVSEDGVAKVSDFGLARVG  150 (254)
T ss_pred             CCCCCHHHHHHhcCcC-CCCHHHHHHHHHHHHHHHHHHHhC---CeeccccCcceEEEcCCCcEEECCCccceec
Confidence            3578999998765432 478888889999999999999988   9999999999999999899999999987654

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>PHA03207 serine/threonine kinase US3; Provisional

Probab=99.29  E-value=2.5e-11  Score=69.73  Aligned_cols=68  Identities=32%  Similarity=0.564  Sum_probs=59.6

Q ss_pred             CCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            3 RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         3 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++|..++....   .+++.....++.|++.++.|+|..   +++|+|+++.|++++....+++.|||++..+.
T Consensus       169 ~~~l~~~l~~~~---~l~~~~~~~i~~ql~~aL~~LH~~---givHrDlkp~Nill~~~~~~~l~DfG~a~~~~  236 (392)
T PHA03207        169 KCDLFTYVDRSG---PLPLEQAITIQRRLLEALAYLHGR---GIIHRDVKTENIFLDEPENAVLGDFGAACKLD  236 (392)
T ss_pred             CCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEcCCCCEEEccCccccccC
Confidence            467888885433   588999999999999999999988   99999999999999999999999999986654

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=99.28  E-value=7e-11  Score=64.46  Aligned_cols=72  Identities=24%  Similarity=0.431  Sum_probs=60.7

Q ss_pred             CCCcHHHHHhcCC---CcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            2 ERGSLFCVLRDDD---EAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         2 ~~g~L~~~l~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      ++|+|..++....   ....+++.....++.|++.++.|+|..   +++|+++++.|+++..+..+++.|||+++.+.
T Consensus        90 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~aL~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~  164 (273)
T cd05035          90 KHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALGMEYLSNR---NFIHRDLAARNCMLREDMTVCVADFGLSKKIY  164 (273)
T ss_pred             CCCCHHHHHHHhhccCCcccCCHHHHHHHHHHHHHHHHHHHhC---CeeccccchheEEECCCCeEEECCccceeecc
Confidence            5688888875432   122578888999999999999999988   99999999999999999999999999987654

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=99.28  E-value=4.4e-11  Score=65.22  Aligned_cols=69  Identities=30%  Similarity=0.418  Sum_probs=61.2

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      ++++|.+++....   .+++.....++.|++.++.|+|..   +++|+++++.|+++.....+++.|||++....
T Consensus        89 ~~~~L~~~~~~~~---~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~nili~~~~~~~l~dfg~~~~~~  157 (267)
T cd06645          89 GGGSLQDIYHVTG---PLSESQIAYVSRETLQGLYYLHSK---GKMHRDIKGANILLTDNGHVKLADFGVSAQIT  157 (267)
T ss_pred             CCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEECCCCCEEECcceeeeEcc
Confidence            5789999887654   588999999999999999999988   99999999999999998999999999876543

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=99.28  E-value=5.1e-11  Score=67.24  Aligned_cols=67  Identities=22%  Similarity=0.424  Sum_probs=58.2

Q ss_pred             CCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            3 RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         3 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++|..++...    .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++....
T Consensus       103 ~~~l~~~~~~~----~l~~~~~~~i~~qi~~aL~~LH~~---~ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~~  169 (343)
T cd07878         103 GADLNNIVKCQ----KLSDEHVQFLIYQLLRGLKYIHSA---GIIHRDLKPSNVAVNEDCELRILDFGLARQAD  169 (343)
T ss_pred             CCCHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHHC---CeecccCChhhEEECCCCCEEEcCCccceecC
Confidence            46677666532    488899999999999999999988   99999999999999999999999999987654

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=99.28  E-value=6.7e-11  Score=64.54  Aligned_cols=70  Identities=40%  Similarity=0.652  Sum_probs=61.3

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      ++++|.+++....+  .+++.....++.+++.++.|+|..   +++|+++++.|++++.+..+++.|||++....
T Consensus        89 ~~~~L~~~~~~~~~--~~~~~~~~~~~~~l~~al~~lH~~---~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~  158 (268)
T cd05063          89 ENGALDKYLRDHDG--EFSSYQLVGMLRGIAAGMKYLSDM---NYVHRDLAARNILVNSNLECKVSDFGLSRVLE  158 (268)
T ss_pred             CCCCHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHHC---CeeccccchhhEEEcCCCcEEECCCccceecc
Confidence            57899999876433  578888999999999999999988   99999999999999998999999999887553

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=99.28  E-value=6.4e-11  Score=64.35  Aligned_cols=70  Identities=37%  Similarity=0.625  Sum_probs=61.4

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      ++|+|.+++.+..+ ..+++.....++.+++.++.|+|..   +++|+++++.|++++.+..+++.|||.+..+
T Consensus        85 ~~~~L~~~~~~~~~-~~~~~~~~~~~~~~i~~al~~lH~~---~i~h~dl~~~nilv~~~~~~kl~d~g~~~~~  154 (261)
T cd05148          85 EKGSLLAFLRSPEG-QVLPVASLIDMACQVAEGMAYLEEQ---NSIHRDLAARNILVGEDLVCKVADFGLARLI  154 (261)
T ss_pred             ccCCHHHHHhcCCC-CCCCHHHHHHHHHHHHHHHHHHHHC---CeeccccCcceEEEcCCceEEEccccchhhc
Confidence            57899999986443 2578889999999999999999988   9999999999999999999999999988654

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=99.28  E-value=5.1e-11  Score=64.60  Aligned_cols=72  Identities=29%  Similarity=0.429  Sum_probs=62.8

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      ++|+|.+++.+... ..+++.....++.|++.++.++|..   +++|+++++.|++++.+..+++.|||++..+..
T Consensus        78 ~~~~L~~~l~~~~~-~~~~~~~~~~~~~qi~~~L~~lH~~---~i~H~di~p~nil~~~~~~~kl~dfg~~~~~~~  149 (257)
T cd05040          78 PLGSLLDRLRKDAL-GHFLISTLCDYAVQIANGMRYLESK---RFIHRDLAARNILLASDDKVKIGDFGLMRALPQ  149 (257)
T ss_pred             CCCcHHHHHHhccc-ccCcHHHHHHHHHHHHHHHHHHHhC---CccccccCcccEEEecCCEEEeccccccccccc
Confidence            57899999886542 2578899999999999999999988   999999999999999999999999998876543

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=99.28  E-value=6e-11  Score=64.16  Aligned_cols=73  Identities=29%  Similarity=0.453  Sum_probs=63.5

Q ss_pred             CCCcHHHHHhcCCC------cccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            2 ERGSLFCVLRDDDE------AIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         2 ~~g~L~~~l~~~~~------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      ++++|.+++.....      ...+++.....++.|++.++.++|..   +++|+++++.|++++.+..+++.|||.+..+
T Consensus        79 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~---~i~H~di~p~nili~~~~~~~l~dfg~~~~~  155 (262)
T cd00192          79 EGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLASK---KFVHRDLAARNCLVGEDLVVKISDFGLSRDV  155 (262)
T ss_pred             cCCcHHHHHhhccccccccccccCCHHHHHHHHHHHHHHHHHHHcC---CcccCccCcceEEECCCCcEEEccccccccc
Confidence            57899999987521      12689999999999999999999988   9999999999999999999999999988766


Q ss_pred             cC
Q 040123           76 HV   77 (84)
Q Consensus        76 ~~   77 (84)
                      ..
T Consensus       156 ~~  157 (262)
T cd00192         156 YD  157 (262)
T ss_pred             cc
Confidence            54

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=99.28  E-value=5.8e-11  Score=64.74  Aligned_cols=70  Identities=31%  Similarity=0.428  Sum_probs=61.1

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++++|.+++....   .+++.....++.|++.++.|+|..   +++|+++++.|++++.+..+++.|||++..+.
T Consensus        88 ~~~~~L~~~~~~~~---~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~nill~~~~~~~l~dfg~~~~~~  157 (267)
T cd06646          88 CGGGSLQDIYHVTG---PLSELQIAYVCRETLQGLAYLHSK---GKMHRDIKGANILLTDNGDVKLADFGVAAKIT  157 (267)
T ss_pred             CCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEECCCCCEEECcCccceeec
Confidence            35688988887544   578889999999999999999988   99999999999999988899999999887553

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=99.27  E-value=3.7e-11  Score=65.49  Aligned_cols=68  Identities=31%  Similarity=0.445  Sum_probs=60.1

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      ++|+|.+++.+..   .+++.....++.|++.++.++|..   +++|+++++.|++++.+..+++.|||++...
T Consensus        89 ~~~~L~~~l~~~~---~~~~~~~~~~~~~l~~~l~~lH~~---~i~H~dl~p~nil~~~~~~~~l~Dfg~~~~~  156 (265)
T cd06652          89 PGGSIKDQLKSYG---ALTENVTRKYTRQILEGVSYLHSN---MIVHRDIKGANILRDSVGNVKLGDFGASKRL  156 (265)
T ss_pred             CCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEecCCCCEEECcCcccccc
Confidence            5789999987654   477888889999999999999988   9999999999999999999999999987654

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=99.27  E-value=4.6e-11  Score=66.01  Aligned_cols=69  Identities=32%  Similarity=0.438  Sum_probs=61.7

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      ++++|.+++.+..   .++......++.|++.++.++|..   +++|+++++.|++++.+..+++.|||++....
T Consensus        84 ~~~~L~~~~~~~~---~l~~~~~~~~~~qil~~l~~lH~~---~i~H~dl~p~nili~~~~~~kl~dfg~~~~~~  152 (290)
T cd05580          84 PGGELFSHLRKSG---RFPEPVARFYAAQVVLALEYLHSL---DIVYRDLKPENLLLDSDGYIKITDFGFAKRVK  152 (290)
T ss_pred             CCCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEECCCCCEEEeeCCCccccC
Confidence            5789999987654   588899999999999999999988   99999999999999999999999999887653

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.27  E-value=1.2e-11  Score=67.28  Aligned_cols=70  Identities=27%  Similarity=0.452  Sum_probs=60.3

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCC---CCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL---NLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~i~~~g~~~~~~   76 (84)
                      |+||+|..-|..+.   .+++.....++.|++.++.|||..   +++|+|+++.|+++..   ...+|+.+||++..+.
T Consensus        92 m~G~dl~~eIV~R~---~ySEa~aSH~~rQiLeal~yCH~n---~IvHRDvkP~nllLASK~~~A~vKL~~FGvAi~l~  164 (355)
T KOG0033|consen   92 VTGGELFEDIVARE---FYSEADASHCIQQILEALAYCHSN---GIVHRDLKPENLLLASKAKGAAVKLADFGLAIEVN  164 (355)
T ss_pred             ccchHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhc---CceeccCChhheeeeeccCCCceeecccceEEEeC
Confidence            67888887776653   678888999999999999999999   9999999999999964   3568999999987665

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=99.27  E-value=5.4e-11  Score=65.08  Aligned_cols=71  Identities=20%  Similarity=0.290  Sum_probs=58.9

Q ss_pred             CCCCcHHHHHhcCCC-cccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEccccccee
Q 040123            1 MERGSLFCVLRDDDE-AIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARL   74 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~   74 (84)
                      +++|+|.+++.+... ....+......++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++..
T Consensus        77 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~---~i~H~dikp~nil~~~~~~~~l~Dfg~~~~  148 (268)
T cd05086          77 CELGDLKSYLSQEQWHRRNSQLLLLQRMACEIAAGVTHMHKH---NFLHSDLALRNCFLTSDLTVKVGDYGIGPS  148 (268)
T ss_pred             CCCCcHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHC---CeeccCCccceEEEcCCccEEecccccccc
Confidence            357899999976432 11355667778899999999999988   999999999999999999999999998653

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=99.27  E-value=8e-11  Score=65.75  Aligned_cols=73  Identities=32%  Similarity=0.494  Sum_probs=61.4

Q ss_pred             CCCCcHHHHHhcCCC-------------cccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEc
Q 040123            1 MERGSLFCVLRDDDE-------------AIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVA   67 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~-------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~   67 (84)
                      +++|+|.+++....+             ...+++.....++.|++.++.|+|..   +++|+++++.|++++.+..+++.
T Consensus       100 ~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~---gi~H~dlkp~Nill~~~~~~kL~  176 (314)
T cd05099         100 AAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCAYQVARGMEYLESR---RCIHRDLAARNVLVTEDNVMKIA  176 (314)
T ss_pred             CCCCcHHHHHHhcCCCcccccccccCCcccccCHHHHHHHHHHHHHHHHHHHHC---CeeeccccceeEEEcCCCcEEEc
Confidence            357899999876421             12477888889999999999999988   99999999999999988999999


Q ss_pred             ccccceecc
Q 040123           68 DFGTARLLH   76 (84)
Q Consensus        68 ~~g~~~~~~   76 (84)
                      |||+++...
T Consensus       177 Dfg~~~~~~  185 (314)
T cd05099         177 DFGLARGVH  185 (314)
T ss_pred             ccccccccc
Confidence            999987553

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=99.27  E-value=5.1e-11  Score=65.77  Aligned_cols=72  Identities=31%  Similarity=0.463  Sum_probs=60.9

Q ss_pred             CCCcHHHHHhcCC-------------CcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcc
Q 040123            2 ERGSLFCVLRDDD-------------EAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVAD   68 (84)
Q Consensus         2 ~~g~L~~~l~~~~-------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~   68 (84)
                      ++|+|..++....             ....+++.....++.|++.++.|+|..   +++|+++++.|++++.+..+++.|
T Consensus        99 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~---~ivH~dlkp~Nil~~~~~~~kL~D  175 (293)
T cd05053          99 AHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQVARGMEFLASK---KCIHRDLAARNVLVTEDHVMKIAD  175 (293)
T ss_pred             CCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHC---CccccccceeeEEEcCCCeEEeCc
Confidence            5788988886431             122578888899999999999999988   999999999999999999999999


Q ss_pred             cccceecc
Q 040123           69 FGTARLLH   76 (84)
Q Consensus        69 ~g~~~~~~   76 (84)
                      ||++..+.
T Consensus       176 fg~~~~~~  183 (293)
T cd05053         176 FGLARDIH  183 (293)
T ss_pred             cccccccc
Confidence            99887654

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=99.27  E-value=7.1e-11  Score=64.84  Aligned_cols=72  Identities=28%  Similarity=0.419  Sum_probs=61.7

Q ss_pred             CCCcHHHHHhcCCCc-----ccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            2 ERGSLFCVLRDDDEA-----IELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      ++|+|.+++......     ..+++.....++.+++.++.|+|..   +++|+++++.|+++.....+++.|||+++.+.
T Consensus        92 ~~~~L~~~l~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~---~i~H~di~p~nil~~~~~~~kl~d~g~~~~~~  168 (280)
T cd05043          92 NWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQIACGMSYLHKR---GVIHKDIAARNCVIDEELQVKITDNALSRDLF  168 (280)
T ss_pred             CCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHHC---CEeecccCHhhEEEcCCCcEEECCCCCccccc
Confidence            468899988764321     2588899999999999999999988   99999999999999998999999999987653

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=99.27  E-value=6.4e-11  Score=64.89  Aligned_cols=70  Identities=26%  Similarity=0.536  Sum_probs=62.0

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCC-cEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNL-EASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~i~~~g~~~~~~   76 (84)
                      +++|+|.+++....   .+++.....++.|++.++.++|..   +++|+++++.|+++.... .+++.|||++....
T Consensus        91 ~~~~~L~~~l~~~~---~l~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~nil~~~~~~~~~l~dfg~~~~~~  161 (267)
T PHA03390         91 IKDGDLFDLLKKEG---KLSEAEVKKIIRQLVEALNDLHKH---NIIHNDIKLENVLYDRAKDRIYLCDYGLCKIIG  161 (267)
T ss_pred             CCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEEeCCCCeEEEecCccceecC
Confidence            35789999998654   588999999999999999999988   999999999999998877 89999999876554

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=99.27  E-value=4.7e-11  Score=64.37  Aligned_cols=69  Identities=25%  Similarity=0.260  Sum_probs=60.4

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      +++|+|.+++.+..   .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+...++.|||.+..+
T Consensus        67 ~~~~~L~~~l~~~~---~l~~~~~~~~~~ql~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~l~df~~~~~~  135 (237)
T cd05576          67 AEGGKLWSHISKFL---NIPEECVKRWAAEMVVALDALHRE---GIVCRDLNPNNILLDDRGHIQLTYFSRWSEV  135 (237)
T ss_pred             CCCCCHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHEEEcCCCCEEEecccchhcc
Confidence            35789999887654   488899999999999999999988   9999999999999999999999999975443

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>PHA02988 hypothetical protein; Provisional

Probab=99.26  E-value=4.7e-11  Score=65.98  Aligned_cols=71  Identities=18%  Similarity=0.292  Sum_probs=60.7

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++|+|.+++.+..   .+++.....++.+++.++.++|..  .+++|+++++.|++++.+..+++.|||++..+.
T Consensus       104 ~~~g~L~~~l~~~~---~~~~~~~~~i~~~i~~~l~~lH~~--~~~~Hrdlkp~nill~~~~~~kl~dfg~~~~~~  174 (283)
T PHA02988        104 CTRGYLREVLDKEK---DLSFKTKLDMAIDCCKGLYNLYKY--TNKPYKNLTSVSFLVTENYKLKIICHGLEKILS  174 (283)
T ss_pred             CCCCcHHHHHhhCC---CCChhHHHHHHHHHHHHHHHHHhc--CCCCCCcCChhhEEECCCCcEEEcccchHhhhc
Confidence            46889999998654   578888899999999999999962  167799999999999999999999999987543

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=99.26  E-value=1e-10  Score=65.00  Aligned_cols=72  Identities=31%  Similarity=0.479  Sum_probs=60.4

Q ss_pred             CCCcHHHHHhcCCC-------------cccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcc
Q 040123            2 ERGSLFCVLRDDDE-------------AIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVAD   68 (84)
Q Consensus         2 ~~g~L~~~l~~~~~-------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~   68 (84)
                      ++|+|.+++.+...             ...+++.....++.|++.++.|+|..   +++|+|+++.|+++..+..+++.|
T Consensus       104 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~---givH~dlkp~Nili~~~~~~kl~D  180 (304)
T cd05101         104 SKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCTYQVARGMEYLASQ---KCIHRDLAARNVLVTENNVMKIAD  180 (304)
T ss_pred             CCCcHHHHHHhcCCcccccccccccCCcccccHHHHHHHHHHHHHHHHHHHHC---CeeecccccceEEEcCCCcEEECC
Confidence            47899999876421             11466778888999999999999988   999999999999999889999999


Q ss_pred             cccceecc
Q 040123           69 FGTARLLH   76 (84)
Q Consensus        69 ~g~~~~~~   76 (84)
                      ||++..+.
T Consensus       181 ~g~~~~~~  188 (304)
T cd05101         181 FGLARDVN  188 (304)
T ss_pred             Cccceecc
Confidence            99887653

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=99.26  E-value=7.8e-11  Score=64.64  Aligned_cols=72  Identities=26%  Similarity=0.492  Sum_probs=59.4

Q ss_pred             CCCCcHHHHHhcCCC-------cccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccce
Q 040123            1 MERGSLFCVLRDDDE-------AIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTAR   73 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~-------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~   73 (84)
                      +++|+|.+++.+...       ...+.+.....++.|++.++.|+|..   +++|+++++.|++++.+..+++.|||++.
T Consensus        91 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~---~~vH~dlkp~Nil~~~~~~~~l~dfg~~~  167 (277)
T cd05062          91 MTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIGDFGMTR  167 (277)
T ss_pred             CCCCCHHHHHHHcCccccccccccCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCcchheEEEcCCCCEEECCCCCcc
Confidence            357899999875322       11245677888899999999999988   99999999999999999999999999876


Q ss_pred             ec
Q 040123           74 LL   75 (84)
Q Consensus        74 ~~   75 (84)
                      ..
T Consensus       168 ~~  169 (277)
T cd05062         168 DI  169 (277)
T ss_pred             cc
Confidence            44

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=99.26  E-value=7e-11  Score=67.40  Aligned_cols=67  Identities=27%  Similarity=0.466  Sum_probs=58.2

Q ss_pred             CcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            4 GSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         4 g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      ++|..++....   .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++....
T Consensus        88 ~~l~~~~~~~~---~l~~~~~~~~~~qi~~aL~~LH~~---~ivH~dlkp~Nili~~~~~~kL~Dfg~a~~~~  154 (372)
T cd07853          88 SDLHKIIVSPQ---PLSSDHVKVFLYQILRGLKYLHSA---GILHRDIKPGNLLVNSNCVLKICDFGLARVEE  154 (372)
T ss_pred             cCHHHHHhcCC---CCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChHHEEECCCCCEEeccccceeecc
Confidence            56666665443   588899999999999999999988   99999999999999999999999999887653

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=99.26  E-value=8.4e-11  Score=64.25  Aligned_cols=71  Identities=28%  Similarity=0.415  Sum_probs=61.8

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++|+|.+++.+...  .+++.....++.+++.++.|+|..   +++|+++++.|++++....+++.|||++....
T Consensus        88 ~~~~~L~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~lH~~---~~~H~dl~p~nili~~~~~~~l~d~g~~~~~~  158 (270)
T cd05056          88 APLGELRSYLQVNKY--SLDLASLILYSYQLSTALAYLESK---RFVHRDIAARNVLVSSPDCVKLGDFGLSRYLE  158 (270)
T ss_pred             CCCCcHHHHHHhCCC--CCCHHHHHHHHHHHHHHHHHHHhC---CeeccccChheEEEecCCCeEEccCceeeecc
Confidence            357899999976443  478899999999999999999988   99999999999999998999999999886543

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=99.26  E-value=7.3e-11  Score=66.70  Aligned_cols=56  Identities=32%  Similarity=0.480  Sum_probs=51.0

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123           18 ELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus        18 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++..+.
T Consensus       169 ~l~~~~~~~~~~qi~~aL~~lH~~---~ivHrDikp~Nill~~~~~vkL~DfG~a~~~~  224 (337)
T cd05054         169 PLTLEDLISYSFQVARGMEFLASR---KCIHRDLAARNILLSENNVVKICDFGLARDIY  224 (337)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCcceEEEeCCCcEEEeccccchhcc
Confidence            467888899999999999999988   99999999999999988899999999987653

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=99.26  E-value=9.6e-11  Score=64.36  Aligned_cols=71  Identities=27%  Similarity=0.463  Sum_probs=60.4

Q ss_pred             CCCcHHHHHhcCCC-------------cccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcc
Q 040123            2 ERGSLFCVLRDDDE-------------AIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVAD   68 (84)
Q Consensus         2 ~~g~L~~~l~~~~~-------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~   68 (84)
                      ++|+|.+++.....             ...++......++.|++.++.|+|..   +++|+++++.|++++.+..+++.|
T Consensus        91 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~al~~lH~~---~i~H~dlkp~Nil~~~~~~~~L~d  167 (283)
T cd05048          91 AHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQIAAGMEYLSSH---HFVHRDLAARNCLVGEGLTVKISD  167 (283)
T ss_pred             CCCcHHHHHHhcCCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccccccceEEEcCCCcEEECC
Confidence            57899998876421             02467788889999999999999988   999999999999999999999999


Q ss_pred             cccceec
Q 040123           69 FGTARLL   75 (84)
Q Consensus        69 ~g~~~~~   75 (84)
                      ||++...
T Consensus       168 fg~~~~~  174 (283)
T cd05048         168 FGLSRDI  174 (283)
T ss_pred             Ccceeec
Confidence            9988654

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=99.26  E-value=9e-11  Score=64.22  Aligned_cols=69  Identities=33%  Similarity=0.548  Sum_probs=59.1

Q ss_pred             CCCcHHHHHhcCCC-------------cccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcc
Q 040123            2 ERGSLFCVLRDDDE-------------AIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVAD   68 (84)
Q Consensus         2 ~~g~L~~~l~~~~~-------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~   68 (84)
                      ++|+|.+++.....             ...+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|
T Consensus        79 ~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~~lH~~---~i~H~dikp~nili~~~~~~kl~d  155 (270)
T cd05047          79 PHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK---QFIHRDLAARNILVGENYVAKIAD  155 (270)
T ss_pred             CCCcHHHHHHhccccccccccccccCCcCCCCHHHHHHHHHHHHHHHHHHHHC---CEeecccccceEEEcCCCeEEECC
Confidence            57899999875321             11367888899999999999999988   999999999999999999999999


Q ss_pred             cccce
Q 040123           69 FGTAR   73 (84)
Q Consensus        69 ~g~~~   73 (84)
                      ||++.
T Consensus       156 fgl~~  160 (270)
T cd05047         156 FGLSR  160 (270)
T ss_pred             CCCcc
Confidence            99874

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=99.26  E-value=7.6e-11  Score=65.36  Aligned_cols=70  Identities=31%  Similarity=0.519  Sum_probs=59.3

Q ss_pred             CCCcHHHHHhcCCC-------------cccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcc
Q 040123            2 ERGSLFCVLRDDDE-------------AIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVAD   68 (84)
Q Consensus         2 ~~g~L~~~l~~~~~-------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~   68 (84)
                      ++|+|.+++.+...             ...+++.....++.|++.++.++|..   +++|+|+++.|++++.+...++.|
T Consensus        86 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~lH~~---~ivH~dlkp~Nill~~~~~~kl~d  162 (297)
T cd05089          86 PYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFASDVATGMQYLSEK---QFIHRDLAARNVLVGENLASKIAD  162 (297)
T ss_pred             CCCcHHHHHHhccccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCcCCcceEEECCCCeEEECC
Confidence            56899998875321             11477888899999999999999988   999999999999999989999999


Q ss_pred             ccccee
Q 040123           69 FGTARL   74 (84)
Q Consensus        69 ~g~~~~   74 (84)
                      ||++..
T Consensus       163 fg~~~~  168 (297)
T cd05089         163 FGLSRG  168 (297)
T ss_pred             cCCCcc
Confidence            998753

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=99.26  E-value=1.5e-10  Score=63.05  Aligned_cols=71  Identities=31%  Similarity=0.524  Sum_probs=61.8

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      ++++|.+++..... ..+++.....++.+++.++.++|..   +++|+|+++.|++++.+..+++.|||++..+.
T Consensus        84 ~~~~L~~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~  154 (261)
T cd05068          84 KYGSLLEYLQGGAG-RALKLPQLIDMAAQVASGMAYLEAQ---NYIHRDLAARNVLVGENNICKVADFGLARVIK  154 (261)
T ss_pred             cCCcHHHHHhccCC-CCCCHHHHHHHHHHHHHHHHHHHhC---CeeeccCCcceEEEcCCCCEEECCcceEEEcc
Confidence            47899999876442 2578899999999999999999988   99999999999999999999999999887654

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=99.26  E-value=8.1e-11  Score=65.50  Aligned_cols=71  Identities=30%  Similarity=0.462  Sum_probs=61.5

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      .+|+|.+++...... .+++.....++.+++.++.|+|..   +++|+++++.|++++.+..+++.|||++..+.
T Consensus       122 ~~~~L~~~i~~~~~~-~l~~~~~~~i~~~i~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~~l~dfg~~~~~~  192 (302)
T cd05055         122 CYGDLLNFLRRKRES-FLTLEDLLSFSYQVAKGMAFLASK---NCIHRDLAARNVLLTHGKIVKICDFGLARDIM  192 (302)
T ss_pred             CCCcHHHHHHhCCCC-CCCHHHHHHHHHHHHHHHHHHHHC---CeehhhhccceEEEcCCCeEEECCCccccccc
Confidence            578999998754322 378899999999999999999988   99999999999999988899999999887543

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.25  E-value=4.2e-12  Score=71.44  Aligned_cols=67  Identities=28%  Similarity=0.431  Sum_probs=60.3

Q ss_pred             CCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            3 RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         3 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      ||+|+-.|.+..   .+++.....|-++|..++.|+|++   +++++|++..|.++++++.+||.|||+++.-
T Consensus       252 GGeLf~HLsrer---~FsE~RtRFYGaEIvsAL~YLHs~---~ivYRDlKLENLlLDkDGHIKitDFGLCKE~  318 (516)
T KOG0690|consen  252 GGELFFHLSRER---VFSEDRTRFYGAEIVSALGYLHSR---NIVYRDLKLENLLLDKDGHIKITDFGLCKEE  318 (516)
T ss_pred             CceEeeehhhhh---cccchhhhhhhHHHHHHhhhhhhC---CeeeeechhhhheeccCCceEeeecccchhc
Confidence            678887776654   688999999999999999999999   9999999999999999999999999998753

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=99.25  E-value=1.1e-10  Score=64.52  Aligned_cols=72  Identities=32%  Similarity=0.513  Sum_probs=61.2

Q ss_pred             CCCCcHHHHHhcCCC-------------cccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEc
Q 040123            1 MERGSLFCVLRDDDE-------------AIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVA   67 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~-------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~   67 (84)
                      +++++|.+++.....             ...+++.....++.|++.++.++|..   +++|+++++.|++++.+..+++.
T Consensus        89 ~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~---~i~H~dlkp~Nil~~~~~~~~l~  165 (291)
T cd05094          89 MKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLASQ---HFVHRDLATRNCLVGANLLVKIG  165 (291)
T ss_pred             CCCCcHHHHHHhcCcccccccccccccCcCCCCHHHHHHHHHHHHHHHHHHHhC---CeeecccCcceEEEccCCcEEEC
Confidence            357899999875431             12478888999999999999999988   99999999999999999999999


Q ss_pred             ccccceec
Q 040123           68 DFGTARLL   75 (84)
Q Consensus        68 ~~g~~~~~   75 (84)
                      |||++...
T Consensus       166 dfg~a~~~  173 (291)
T cd05094         166 DFGMSRDV  173 (291)
T ss_pred             CCCccccc
Confidence            99987644

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=99.25  E-value=8.1e-11  Score=64.23  Aligned_cols=71  Identities=38%  Similarity=0.579  Sum_probs=61.7

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      +++|+|.++|..... ..+++.....++.|++.|+.|+|..   +++|+++++.|++++.+..+|+.+||++...
T Consensus        83 ~~~g~L~~~L~~~~~-~~~~~~~~~~i~~~i~~~l~~Lh~~---~iiH~~l~~~nill~~~~~~Kl~~f~~~~~~  153 (259)
T PF07714_consen   83 CPGGSLDDYLKSKNK-EPLSEQQRLSIAIQIAEALSYLHSN---NIIHGNLSPSNILLDSNGQVKLSDFGLSRPI  153 (259)
T ss_dssp             -TTEBHHHHHHHTCT-TTSBHHHHHHHHHHHHHHHHHHHHT---TEEEST-SGGGEEEETTTEEEEESTTTGEET
T ss_pred             ccccccccccccccc-ccccccccccccccccccccccccc---ccccccccccccccccccccccccccccccc
Confidence            357899999998722 1588999999999999999999998   9999999999999999999999999988776

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=99.25  E-value=1e-10  Score=64.58  Aligned_cols=72  Identities=32%  Similarity=0.521  Sum_probs=61.2

Q ss_pred             CCCCcHHHHHhcCCC----------cccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccc
Q 040123            1 MERGSLFCVLRDDDE----------AIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFG   70 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~----------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g   70 (84)
                      +++|+|.+++.....          ...+++.....++.|++.++.|+|..   +++|+++++.|++++....+++.|||
T Consensus        89 ~~~~~L~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~lH~~---~i~H~dlkp~Nili~~~~~~kl~dfg  165 (288)
T cd05093          89 MKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAGMVYLASQ---HFVHRDLATRNCLVGENLLVKIGDFG  165 (288)
T ss_pred             CCCCCHHHHHHHcCCccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeecccCcceEEEccCCcEEeccCC
Confidence            357899998875431          12478889999999999999999988   99999999999999999999999999


Q ss_pred             cceec
Q 040123           71 TARLL   75 (84)
Q Consensus        71 ~~~~~   75 (84)
                      ++...
T Consensus       166 ~~~~~  170 (288)
T cd05093         166 MSRDV  170 (288)
T ss_pred             ccccc
Confidence            88654

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=99.25  E-value=6.5e-11  Score=66.75  Aligned_cols=70  Identities=30%  Similarity=0.452  Sum_probs=60.1

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      +++|+|.+++....   .+++.....++.+++.++.|+|..  .+++|+++++.|++++.+..+++.|||++..+
T Consensus        85 ~~~~~L~~~l~~~~---~~~~~~~~~~~~~l~~~l~~lH~~--~~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~  154 (333)
T cd06650          85 MDGGSLDQVLKKAG---RIPEQILGKVSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVSGQL  154 (333)
T ss_pred             CCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHhc--CCEEecCCChhhEEEcCCCCEEEeeCCcchhh
Confidence            35789999998654   578888889999999999999963  16999999999999998889999999988654

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.25  E-value=7.3e-11  Score=64.13  Aligned_cols=69  Identities=30%  Similarity=0.445  Sum_probs=60.7

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      ++++|.+++....   .+++.....++.|++.++.++|..   +++|+++++.|++++.+..+++.|||++....
T Consensus        87 ~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~l~~lH~~---~i~H~dl~p~nilv~~~~~~~l~dfg~~~~~~  155 (263)
T cd06625          87 PGGSVKDQLKAYG---ALTETVTRKYTRQILEGVEYLHSN---MIVHRDIKGANILRDSAGNVKLGDFGASKRLQ  155 (263)
T ss_pred             CCCcHHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEeecccceecc
Confidence            5788888887654   578888889999999999999988   99999999999999998999999999886543

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=99.25  E-value=8.4e-11  Score=64.22  Aligned_cols=70  Identities=31%  Similarity=0.475  Sum_probs=60.8

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      .+|+|.+++...... .+++.....++.|++.++.|+|..   +++|+++++.|++++.+..+++.|||++...
T Consensus        92 ~~~~L~~~l~~~~~~-~l~~~~~~~~~~qi~~~l~~LH~~---~ivh~dl~~~nili~~~~~~~l~Dfg~~~~~  161 (272)
T cd06637          92 GAGSVTDLIKNTKGN-TLKEEWIAYICREILRGLSHLHQH---KVIHRDIKGQNVLLTENAEVKLVDFGVSAQL  161 (272)
T ss_pred             CCCcHHHHHHhccCC-CCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCCHHHEEECCCCCEEEccCCCceec
Confidence            467898888764322 578888899999999999999988   9999999999999999999999999998754

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.25  E-value=1.2e-10  Score=63.68  Aligned_cols=69  Identities=28%  Similarity=0.369  Sum_probs=57.2

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCc-------EEEccccccee
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLE-------ASVADFGTARL   74 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-------~~i~~~g~~~~   74 (84)
                      ++|+|..++.....  .+++.....++.|++.++.|+|+.   +++|+|+++.|++++....       +++.|||++..
T Consensus        87 ~~~~l~~~~~~~~~--~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~Nill~~~~~~~~~~~~~~l~d~g~~~~  161 (262)
T cd05077          87 EFGPLDLFMHRKSD--VLTTPWKFKVAKQLASALSYLEDK---DLVHGNVCTKNILLAREGIDGECGPFIKLSDPGIPIT  161 (262)
T ss_pred             cCCCHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHhhhC---CeECCCCCcccEEEecCCccCCCCceeEeCCCCCCcc
Confidence            46788888765433  578888999999999999999988   9999999999999975443       78999998764


Q ss_pred             c
Q 040123           75 L   75 (84)
Q Consensus        75 ~   75 (84)
                      +
T Consensus       162 ~  162 (262)
T cd05077         162 V  162 (262)
T ss_pred             c
Confidence            4

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=99.25  E-value=2.5e-11  Score=76.52  Aligned_cols=65  Identities=25%  Similarity=0.458  Sum_probs=53.5

Q ss_pred             cHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEccccccee
Q 040123            5 SLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARL   74 (84)
Q Consensus         5 ~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~   74 (84)
                      .+..+++.+.-.  -.....+.++++|+.|+.|+|..   +++|+|++|.||+++....+||.|||++..
T Consensus       682 ll~~iI~~N~~~--~~~d~~wrLFreIlEGLaYIH~~---giIHRDLKP~NIFLd~~~~VKIGDFGLAt~  746 (1351)
T KOG1035|consen  682 LLRDIIRRNHFN--SQRDEAWRLFREILEGLAYIHDQ---GIIHRDLKPRNIFLDSRNSVKIGDFGLATD  746 (1351)
T ss_pred             HHHHHHHhcccc--hhhHHHHHHHHHHHHHHHHHHhC---ceeeccCCcceeEEcCCCCeeecccccchh
Confidence            344555544310  02567889999999999999999   999999999999999999999999999876

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=99.25  E-value=6.5e-11  Score=65.86  Aligned_cols=69  Identities=33%  Similarity=0.548  Sum_probs=59.4

Q ss_pred             CCCcHHHHHhcCCC-------------cccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcc
Q 040123            2 ERGSLFCVLRDDDE-------------AIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVAD   68 (84)
Q Consensus         2 ~~g~L~~~l~~~~~-------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~   68 (84)
                      ++|+|.+++.....             ...++......++.|++.++.|+|..   +++|+++++.|++++.+..+++.|
T Consensus        91 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~---gi~H~dlkp~Nili~~~~~~kl~d  167 (303)
T cd05088          91 PHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK---QFIHRDLAARNILVGENYVAKIAD  167 (303)
T ss_pred             CCCcHHHHHHhcccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHhC---CccccccchheEEecCCCcEEeCc
Confidence            57899999875431             12467888999999999999999988   999999999999999999999999


Q ss_pred             cccce
Q 040123           69 FGTAR   73 (84)
Q Consensus        69 ~g~~~   73 (84)
                      ||++.
T Consensus       168 fg~~~  172 (303)
T cd05088         168 FGLSR  172 (303)
T ss_pred             cccCc
Confidence            99875

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=99.25  E-value=5.1e-11  Score=64.76  Aligned_cols=69  Identities=23%  Similarity=0.356  Sum_probs=61.0

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      +++++|.+++....   .++......++.|++.++.|+|..   +++|+++++.|++++.+..+++.|||++...
T Consensus        79 ~~~~~L~~~l~~~~---~~~~~~~~~i~~qi~~aL~~lH~~---~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~  147 (260)
T cd05611          79 LNGGDCASLIKTLG---GLPEDWAKQYIAEVVLGVEDLHQR---GIIHRDIKPENLLIDQTGHLKLTDFGLSRNG  147 (260)
T ss_pred             cCCCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEECCCCcEEEeecccceec
Confidence            35789999987654   578889999999999999999988   9999999999999999999999999987653

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=99.25  E-value=1.4e-10  Score=62.80  Aligned_cols=71  Identities=32%  Similarity=0.523  Sum_probs=61.5

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      ++++|.+++...... .+++.+...++.+++.++.++|..   +++|+++++.|++++....+++.|||++..+.
T Consensus        83 ~~~~l~~~l~~~~~~-~l~~~~~~~~~~~l~~~l~~lH~~---~i~H~di~p~nil~~~~~~~~l~df~~~~~~~  153 (257)
T cd08223          83 EGGDLYHKLKEQKGK-LLPENQVVEWFVQIAMALQYLHEK---HILHRDLKTQNVFLTRTNIIKVGDLGIARVLE  153 (257)
T ss_pred             CCCcHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCchhEEEecCCcEEEecccceEEec
Confidence            568898888764322 478899999999999999999988   99999999999999999999999999887653

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.25  E-value=9.5e-11  Score=64.25  Aligned_cols=70  Identities=26%  Similarity=0.486  Sum_probs=62.1

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      ++++|.+++.....  .+++.....++.|++.++.++|..   +++|+++++.|++++.+..+++.|||.+....
T Consensus        91 ~~~~l~~~l~~~~~--~~~~~~~~~~~~~l~~aL~~lH~~---~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~  160 (284)
T cd05038          91 PSGSLRDYLQRHRD--QINLKRLLLFSSQICKGMDYLGSQ---RYIHRDLAARNILVESEDLVKISDFGLAKVLP  160 (284)
T ss_pred             CCCCHHHHHHhCcc--ccCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHhEEEcCCCCEEEcccccccccc
Confidence            57899999876543  478889999999999999999988   99999999999999999999999999887665

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=99.25  E-value=1e-10  Score=63.62  Aligned_cols=71  Identities=35%  Similarity=0.588  Sum_probs=61.4

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      ++++|.+++..... ..+++.....++.+++.++.|+|..   +++|+++++.|++++.+..+++.|||.+..+.
T Consensus        83 ~~~~L~~~~~~~~~-~~~~~~~~~~~~~~l~~al~~lH~~---~i~H~di~p~Nili~~~~~~~l~dfg~~~~~~  153 (260)
T cd05070          83 SKGSLLDFLKDGEG-RALKLPNLVDMAAQVAAGMAYIERM---NYIHRDLRSANILVGDGLVCKIADFGLARLIE  153 (260)
T ss_pred             CCCcHHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCccceEEEeCCceEEeCCceeeeecc
Confidence            57899998875432 2478889999999999999999988   99999999999999998899999999887654

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.25  E-value=4.6e-11  Score=68.66  Aligned_cols=70  Identities=30%  Similarity=0.502  Sum_probs=62.2

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCC----CcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLN----LEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~i~~~g~~~~~~   76 (84)
                      ++||+|++.|...    .+++.....++.|++.++.|+|..   +++|+|++++|+++...    ..+++.|||++....
T Consensus       118 ~~GGeLfd~i~~~----~~sE~da~~~~~~il~av~~lH~~---gvvHrDlKpEN~L~~~~~~~~~~ik~~DFGla~~~~  190 (382)
T KOG0032|consen  118 CEGGELFDRIVKK----HYSERDAAGIIRQILEAVKYLHSL---GVVHRDLKPENLLLASKDEGSGRIKLIDFGLAKFIK  190 (382)
T ss_pred             cCCchHHHHHHHc----cCCHHHHHHHHHHHHHHHHHHHhC---CceeccCCHHHeeeccccCCCCcEEEeeCCCceEcc
Confidence            4689999999876    288999999999999999999988   99999999999999643    369999999998877


Q ss_pred             C
Q 040123           77 V   77 (84)
Q Consensus        77 ~   77 (84)
                      .
T Consensus       191 ~  191 (382)
T KOG0032|consen  191 P  191 (382)
T ss_pred             C
Confidence            5

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=99.25  E-value=1.7e-10  Score=63.49  Aligned_cols=69  Identities=29%  Similarity=0.490  Sum_probs=59.5

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      ++|+|..++.+...  .+++.....++.|++.++.|+|..   +++|+++++.|++++.+..++++|||++...
T Consensus        85 ~~~~l~~~~~~~~~--~l~~~~~~~~~~qi~~~L~~LH~~---~i~H~dlkp~nili~~~~~~kl~dfg~~~~~  153 (282)
T cd06643          85 AGGAVDAVMLELER--PLTEPQIRVVCKQTLEALNYLHEN---KIIHRDLKAGNILFTLDGDIKLADFGVSAKN  153 (282)
T ss_pred             CCCcHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCcccEEEccCCCEEEccccccccc
Confidence            46788877764332  588899999999999999999988   9999999999999999999999999987654

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>PHA02882 putative serine/threonine kinase; Provisional

Probab=99.24  E-value=8.1e-11  Score=65.27  Aligned_cols=55  Identities=29%  Similarity=0.443  Sum_probs=49.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123           19 LNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus        19 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      .++..+..++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||+++.+.
T Consensus       123 ~~~~~~~~i~~qi~~~l~~lH~~---~iiHrDiKp~Nill~~~~~~~l~DFGla~~~~  177 (294)
T PHA02882        123 KNKKLIKNIMKDMLTTLEYIHEH---GISHGDIKPENIMVDGNNRGYIIDYGIASHFI  177 (294)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCcEEEEEcCCceeec
Confidence            56677888999999999999988   99999999999999988899999999987653

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=99.24  E-value=1.3e-10  Score=62.86  Aligned_cols=72  Identities=29%  Similarity=0.396  Sum_probs=62.1

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      ++++|.+++..... ..+++.....++.+++.++.|+|..   +++|+++++.|++++....+++.|||++..+..
T Consensus        82 ~~~~L~~~l~~~~~-~~~~~~~~~~i~~~l~~al~~lH~~---~i~h~dl~~~nili~~~~~~~l~df~~~~~~~~  153 (256)
T cd08529          82 ENGDLHKLLKMQRG-RPLPEDQVWRFFIQILLGLAHLHSK---KILHRDIKSLNLFLDAYDNVKIGDLGVAKLLSD  153 (256)
T ss_pred             CCCcHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCcceEEEeCCCCEEEcccccceeccC
Confidence            57899999876422 2588888899999999999999988   999999999999999999999999998776543

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=99.24  E-value=1.2e-10  Score=64.16  Aligned_cols=69  Identities=28%  Similarity=0.431  Sum_probs=58.9

Q ss_pred             CcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            4 GSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         4 g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      ++|..++...... .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++..+.
T Consensus        91 ~~l~~~~~~~~~~-~~~~~~~~~~~~qi~~al~~lH~~---~ivH~dikp~Nili~~~~~~kl~dfg~~~~~~  159 (288)
T cd07863          91 QDLRTYLDKVPPP-GLPAETIKDLMRQFLRGLDFLHAN---CIVHRDLKPENILVTSGGQVKLADFGLARIYS  159 (288)
T ss_pred             cCHHHHHHhcCCC-CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCCEEECccCcccccc
Confidence            4677777654321 478899999999999999999988   99999999999999999999999999887654

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=99.24  E-value=1.5e-10  Score=62.96  Aligned_cols=71  Identities=28%  Similarity=0.583  Sum_probs=61.0

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      ++|+|.+++.+..+. .+++.....++.+++.++.++|..   +++|+++++.|++++....+++.|||.+....
T Consensus        83 ~~~~L~~~~~~~~~~-~~~~~~~~~~~~~l~~aL~~lH~~---~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~  153 (260)
T cd05073          83 AKGSLLDFLKSDEGS-KQPLPKLIDFSAQIAEGMAFIEQR---NYIHRDLRAANILVSASLVCKIADFGLARVIE  153 (260)
T ss_pred             CCCcHHHHHHhCCcc-ccCHHHHHHHHHHHHHHHHHHHhC---CccccccCcceEEEcCCCcEEECCCcceeecc
Confidence            578999999764322 467788888999999999999988   99999999999999999999999999876543

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=99.24  E-value=3.5e-11  Score=71.61  Aligned_cols=68  Identities=35%  Similarity=0.592  Sum_probs=62.6

Q ss_pred             CcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            4 GSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         4 g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      |+|..+|....   .+++..+..+..++..++.|+|+.   +++|+|+++.||++.+++.+|+.|||+++.+..
T Consensus        85 g~L~~il~~d~---~lpEe~v~~~a~~LVsaL~yLhs~---rilhrd~kPqniLl~~~~~~KlcdFg~Ar~m~~  152 (808)
T KOG0597|consen   85 GDLFTILEQDG---KLPEEQVRAIAYDLVSALYYLHSN---RILHRDMKPQNILLEKGGTLKLCDFGLARAMST  152 (808)
T ss_pred             hhHHHHHHhcc---CCCHHHHHHHHHHHHHHHHHHHhc---CcccccCCcceeeecCCCceeechhhhhhhccc
Confidence            58888887655   699999999999999999999988   999999999999999999999999999987754

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=99.24  E-value=8.6e-11  Score=64.03  Aligned_cols=69  Identities=30%  Similarity=0.518  Sum_probs=61.2

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      ++++|.+++....   .+++.....++.|++.++.++|..   +++|+++++.|++++.+..+++.|||.++.+.
T Consensus        89 ~~~~L~~~l~~~~---~l~~~~~~~~~~~l~~~l~~lH~~---~ivH~di~p~nil~~~~~~~~l~dfg~~~~~~  157 (267)
T cd06628          89 PGGSVAALLNNYG---AFEETLVRNFVRQILKGLNYLHNR---GIIHRDIKGANILVDNKGGIKISDFGISKKLE  157 (267)
T ss_pred             CCCCHHHHHHhcc---CccHHHHHHHHHHHHHHHHHHHhc---CcccccCCHHHEEEcCCCCEEecccCCCcccc
Confidence            5788999997654   578888889999999999999988   99999999999999999999999999877654

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=99.24  E-value=6.9e-11  Score=65.73  Aligned_cols=68  Identities=26%  Similarity=0.430  Sum_probs=60.3

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEccccccee
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARL   74 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~   74 (84)
                      +++++|.+++....   .+++.....++.+++.++.|+|..   +++|+++++.|++++....+++.|||+++.
T Consensus        83 ~~g~~L~~~l~~~~---~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~NIll~~~~~~~l~dfg~~~~  150 (305)
T cd05609          83 VEGGDCATLLKNIG---ALPVDMARMYFAETVLALEYLHNY---GIVHRDLKPDNLLITSMGHIKLTDFGLSKI  150 (305)
T ss_pred             CCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCchHHEEECCCCCEEEeeCCCccc
Confidence            35789999997654   578888888999999999999988   999999999999999999999999998753

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.24  E-value=2.6e-11  Score=70.14  Aligned_cols=67  Identities=24%  Similarity=0.415  Sum_probs=62.5

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEccccccee
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARL   74 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~   74 (84)
                      .||+|.-.|.+.+   .+.+..+..|+++++.++-|+|++   +++++|++..|++++..+.+||.|||+++.
T Consensus       433 nGGDLMyhiQQ~G---kFKEp~AvFYAaEiaigLFFLh~k---gIiYRDLKLDNvmLd~eGHiKi~DFGmcKE  499 (683)
T KOG0696|consen  433 NGGDLMYHIQQVG---KFKEPVAVFYAAEIAIGLFFLHSK---GIIYRDLKLDNVMLDSEGHIKIADFGMCKE  499 (683)
T ss_pred             cCchhhhHHHHhc---ccCCchhhhhhHHHHHHhhhhhcC---CeeeeeccccceEeccCCceEeeecccccc
Confidence            4899999998877   688999999999999999999999   999999999999999999999999998865

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=99.23  E-value=1.5e-10  Score=62.95  Aligned_cols=71  Identities=32%  Similarity=0.604  Sum_probs=61.7

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      ++|+|.+++....+ ..+++.....++.|++.++.++|..   +++|+++++.|++++.+..+++.|||++....
T Consensus        83 ~~~~L~~~~~~~~~-~~~~~~~~~~i~~~i~~al~~LH~~---~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~  153 (260)
T cd05067          83 ENGSLVDFLKTPEG-IKLTINKLIDMAAQIAEGMAFIERK---NYIHRDLRAANILVSETLCCKIADFGLARLIE  153 (260)
T ss_pred             CCCCHHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHHhcC---CeecccccHHhEEEcCCCCEEEccCcceeecC
Confidence            57899998875433 2578888899999999999999988   99999999999999999999999999887654

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=99.23  E-value=1.4e-10  Score=62.87  Aligned_cols=70  Identities=31%  Similarity=0.548  Sum_probs=61.5

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      ++++|.++++..... .+++.....++.|++.++.|+|..   +++|+++++.|++++.+...++.|||.+...
T Consensus        83 ~~~~L~~~~~~~~~~-~~~~~~~~~~~~qi~~~l~~lh~~---~i~H~di~p~Nili~~~~~~~l~d~g~~~~~  152 (256)
T cd05039          83 AKGSLVDYLRSRGRA-VITLAQQLGFALDVCEGMEYLEEK---NFVHRDLAARNVLVSEDLVAKVSDFGLAKEA  152 (256)
T ss_pred             CCCcHHHHHHhcCCC-CCCHHHHHHHHHHHHHHHHHHHhC---CccchhcccceEEEeCCCCEEEccccccccc
Confidence            568999998765422 478899999999999999999988   9999999999999999999999999987765

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=99.23  E-value=1.4e-10  Score=63.46  Aligned_cols=71  Identities=24%  Similarity=0.327  Sum_probs=59.0

Q ss_pred             CCCCcHHHHHhcCCC--cccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEccccccee
Q 040123            1 MERGSLFCVLRDDDE--AIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARL   74 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~   74 (84)
                      +++|+|.+++.....  ....++.....++.|++.++.|+|..   +++|+|+++.|++++....+++.|||++..
T Consensus        77 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~i~H~dlkp~nil~~~~~~~kL~dfg~~~~  149 (269)
T cd05087          77 CPLGDLKGYLRSCRKAELMTPDPTTLQRMACEIALGLLHLHKN---NFIHSDLALRNCLLTADLTVKIGDYGLSHN  149 (269)
T ss_pred             CCCCcHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHC---CEeccccCcceEEEcCCCcEEECCcccccc
Confidence            457899999875331  12355667778899999999999988   999999999999999989999999998754

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=99.23  E-value=2.2e-10  Score=61.95  Aligned_cols=69  Identities=28%  Similarity=0.485  Sum_probs=60.1

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      ++|+|.+++.....  .+.+.....++.+++.++.++|..   +++|+++++.|++++.+..+++.|||++...
T Consensus        75 ~~~~L~~~~~~~~~--~~~~~~~~~~~~~i~~~l~~lH~~---~~~H~dl~p~nili~~~~~~~l~d~g~~~~~  143 (250)
T cd05085          75 PGGDFLSFLRKKKD--ELKTKQLVKFALDAAAGMAYLESK---NCIHRDLAARNCLVGENNVLKISDFGMSRQE  143 (250)
T ss_pred             CCCcHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHhC---CeeecccChheEEEcCCCeEEECCCccceec
Confidence            57899988875433  478888899999999999999988   9999999999999999999999999987653

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=99.23  E-value=1.6e-10  Score=64.49  Aligned_cols=68  Identities=31%  Similarity=0.458  Sum_probs=60.1

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhc-CCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHH-DCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      ++++|.+++.+..   .+++.....++.|++.++.|+|+ .   +++|+++++.|++++.+..+++.|||++..+
T Consensus        82 ~~~~L~~~l~~~~---~~~~~~~~~~~~~i~~~l~~lH~~~---~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~  150 (308)
T cd06615          82 DGGSLDQVLKKAG---RIPENILGKISIAVLRGLTYLREKH---KIMHRDVKPSNILVNSRGEIKLCDFGVSGQL  150 (308)
T ss_pred             CCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhhC---CEEECCCChHHEEEecCCcEEEccCCCcccc
Confidence            5789999997654   58888999999999999999996 4   7999999999999998889999999987654

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=99.23  E-value=1.5e-10  Score=63.97  Aligned_cols=71  Identities=30%  Similarity=0.491  Sum_probs=60.9

Q ss_pred             CCCcHHHHHhcCCC--------cccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccce
Q 040123            2 ERGSLFCVLRDDDE--------AIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTAR   73 (84)
Q Consensus         2 ~~g~L~~~l~~~~~--------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~   73 (84)
                      ++++|.+++.....        ...+++.....++.|++.++.|+|..   +++|+|+++.|++++....+++.|||++.
T Consensus       102 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~LH~~---~i~H~dlkp~Nili~~~~~~~l~dfg~~~  178 (296)
T cd05051         102 ENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLESL---NFVHRDLATRNCLVGKNYTIKIADFGMSR  178 (296)
T ss_pred             CCCCHHHHHHhcccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHc---CccccccchhceeecCCCceEEcccccee
Confidence            46889988876441        12478889999999999999999988   99999999999999999999999999877


Q ss_pred             ec
Q 040123           74 LL   75 (84)
Q Consensus        74 ~~   75 (84)
                      ..
T Consensus       179 ~~  180 (296)
T cd05051         179 NL  180 (296)
T ss_pred             ec
Confidence            54

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=99.23  E-value=2e-10  Score=62.29  Aligned_cols=72  Identities=28%  Similarity=0.410  Sum_probs=61.4

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++|+|.+++....+. .+++.....++.|++.++.++|..   +++|+++++.|++++.+..+++.|||.+..+.
T Consensus        80 ~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~i~~al~~lH~~---~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~  151 (255)
T cd08219          80 CDGGDLMQKIKLQRGK-LFPEDTILQWFVQMCLGVQHIHEK---RVLHRDIKSKNIFLTQNGKVKLGDFGSARLLT  151 (255)
T ss_pred             CCCCcHHHHHHhccCC-CCCHHHHHHHHHHHHHHHHHHhhC---CcccCCCCcceEEECCCCcEEEcccCcceeec
Confidence            3578898888653322 478888999999999999999988   99999999999999999999999999887654

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=99.22  E-value=9.2e-11  Score=63.59  Aligned_cols=68  Identities=29%  Similarity=0.505  Sum_probs=60.7

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      ++++|.+++.+..   .+++.....++.|++.++.++|..   +++|+++++.|++++.+..+++.|||++...
T Consensus        76 ~~~~L~~~l~~~~---~~~~~~~~~i~~qi~~~L~~lH~~---~i~H~di~~~nil~~~~~~~~l~dfg~~~~~  143 (265)
T cd05579          76 PGGDLASLLENVG---SLDEDVARIYIAEIVLALEYLHSN---GIIHRDLKPDNILIDSNGHLKLTDFGLSKVG  143 (265)
T ss_pred             CCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHc---CeecCCCCHHHeEEcCCCCEEEEecccchhc
Confidence            5678998887654   588899999999999999999988   9999999999999999999999999987654

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=99.22  E-value=1.1e-10  Score=64.93  Aligned_cols=71  Identities=31%  Similarity=0.485  Sum_probs=60.5

Q ss_pred             CCCcHHHHHhcCCC-------------cccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcc
Q 040123            2 ERGSLFCVLRDDDE-------------AIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVAD   68 (84)
Q Consensus         2 ~~g~L~~~l~~~~~-------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~   68 (84)
                      ++|+|.+++.....             ...+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|
T Consensus       107 ~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~---gi~H~dlkp~Nill~~~~~~kL~d  183 (307)
T cd05098         107 SKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYLASK---KCIHRDLAARNVLVTEDNVMKIAD  183 (307)
T ss_pred             CCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHC---CcccccccHHheEEcCCCcEEECC
Confidence            57899999976432             11477888889999999999999988   999999999999999999999999


Q ss_pred             cccceec
Q 040123           69 FGTARLL   75 (84)
Q Consensus        69 ~g~~~~~   75 (84)
                      ||.+...
T Consensus       184 fg~a~~~  190 (307)
T cd05098         184 FGLARDI  190 (307)
T ss_pred             Ccccccc
Confidence            9988654

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=99.22  E-value=2.2e-10  Score=64.49  Aligned_cols=72  Identities=32%  Similarity=0.501  Sum_probs=60.2

Q ss_pred             CCCcHHHHHhcCCC-------------cccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcc
Q 040123            2 ERGSLFCVLRDDDE-------------AIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVAD   68 (84)
Q Consensus         2 ~~g~L~~~l~~~~~-------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~   68 (84)
                      ++|+|.+++.+...             ...+++.....++.|++.++.|+|..   +++|+++++.|+++..+..+++.|
T Consensus       101 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~---givH~dlkp~Nill~~~~~~kL~D  177 (334)
T cd05100         101 SKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCAYQVARGMEYLASQ---KCIHRDLAARNVLVTEDNVMKIAD  177 (334)
T ss_pred             CCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHC---CeeccccccceEEEcCCCcEEECC
Confidence            46889998875321             11367778888999999999999988   999999999999999889999999


Q ss_pred             cccceecc
Q 040123           69 FGTARLLH   76 (84)
Q Consensus        69 ~g~~~~~~   76 (84)
                      ||+++.+.
T Consensus       178 fg~~~~~~  185 (334)
T cd05100         178 FGLARDVH  185 (334)
T ss_pred             cccceecc
Confidence            99887543

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=99.22  E-value=9.6e-11  Score=63.74  Aligned_cols=70  Identities=31%  Similarity=0.477  Sum_probs=61.9

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      ++++|.+++.+..   .++......++.|++.++.++|+.   +++|+++++.|++++.+..+++.|||++.....
T Consensus        76 ~~~~L~~~l~~~~---~l~~~~~~~~~~~i~~~l~~lH~~---~~~h~dl~~~nilv~~~~~~~l~df~~~~~~~~  145 (262)
T cd05572          76 LGGELWTILRDRG---LFDEYTARFYIACVVLAFEYLHNR---GIIYRDLKPENLLLDSNGYVKLVDFGFAKKLKS  145 (262)
T ss_pred             CCCcHHHHHhhcC---CCCHHHHHHHHHHHHHHHHHHhhC---CcccCCCCHHHEEEcCCCCEEEeeCCcccccCc
Confidence            5789999987654   478888899999999999999988   999999999999999999999999998876543

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=99.22  E-value=1.3e-10  Score=64.06  Aligned_cols=56  Identities=32%  Similarity=0.464  Sum_probs=51.5

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123           18 ELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus        18 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      .+++.....++.|++.++.|+|..   +++|+++++.|++++.+..+++.|||++..+.
T Consensus        96 ~~~~~~~~~~~~qi~~~L~~lH~~---~i~H~dlkp~Nill~~~~~~kl~Dfg~~~~~~  151 (287)
T cd07848          96 GVPPEKVRSYIYQLIKAIHWCHKN---DIVHRDIKPENLLISHNDVLKLCDFGFARNLS  151 (287)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCcEEEeeccCccccc
Confidence            578888899999999999999988   99999999999999999999999999987653

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.22  E-value=1.7e-10  Score=63.38  Aligned_cols=69  Identities=28%  Similarity=0.408  Sum_probs=57.0

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCC-------cEEEcccccce
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNL-------EASVADFGTAR   73 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-------~~~i~~~g~~~   73 (84)
                      +++|+|..++....+  .+++.....++.|++.++.|+|..   +++|+|+++.|++++...       .+++.|||.+.
T Consensus        98 ~~~g~L~~~l~~~~~--~~~~~~~~~i~~qi~~~l~~lH~~---~iiH~dlkp~Nill~~~~~~~~~~~~~kl~d~g~~~  172 (274)
T cd05076          98 VEHGPLDVCLRKEKG--RVPVAWKITVAQQLASALSYLEDK---NLVHGNVCAKNILLARLGLAEGTSPFIKLSDPGVSF  172 (274)
T ss_pred             CCCCcHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHcC---CccCCCCCcccEEEeccCcccCccceeeecCCcccc
Confidence            457899988875433  578888899999999999999988   999999999999996432       37899999765


Q ss_pred             e
Q 040123           74 L   74 (84)
Q Consensus        74 ~   74 (84)
                      .
T Consensus       173 ~  173 (274)
T cd05076         173 T  173 (274)
T ss_pred             c
Confidence            4

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=99.22  E-value=1.2e-10  Score=64.21  Aligned_cols=69  Identities=28%  Similarity=0.407  Sum_probs=60.4

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      ++|+|.+++....   .+++.....++.|++.++.++|..   +++|+++++.|++++.+..+++.|||++....
T Consensus        88 ~~~~L~~~~~~~~---~~~~~~~~~~~~ql~~~l~~lH~~---~~~H~dl~p~nil~~~~~~~~l~dfg~~~~~~  156 (288)
T cd05583          88 NGGELFTHLYQRE---HFTESEVRVYIAEIVLALDHLHQL---GIIYRDIKLENILLDSEGHVVLTDFGLSKEFL  156 (288)
T ss_pred             CCCcHHHHHhhcC---CcCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHeEECCCCCEEEEECccccccc
Confidence            5788988887543   578888889999999999999988   99999999999999998899999999876543

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=99.22  E-value=1.4e-10  Score=63.73  Aligned_cols=70  Identities=29%  Similarity=0.489  Sum_probs=61.0

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      +++++|.+++.+...  .+++.....++.|++.++.|+|..   +++|+++++.|++++.+..+++.|||++...
T Consensus        84 ~~~~~L~~~~~~~~~--~l~~~~~~~~~~ql~~~l~~lh~~---~i~h~dl~p~nili~~~~~~~l~d~g~~~~~  153 (280)
T cd06611          84 CDGGALDSIMLELER--GLTEPQIRYVCRQMLEALNFLHSH---KVIHRDLKAGNILLTLDGDVKLADFGVSAKN  153 (280)
T ss_pred             cCCCcHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChhhEEECCCCCEEEccCccchhh
Confidence            357899888876443  588999999999999999999988   9999999999999999999999999976544

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=99.22  E-value=1.6e-10  Score=64.44  Aligned_cols=67  Identities=27%  Similarity=0.395  Sum_probs=57.7

Q ss_pred             CcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            4 GSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         4 g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      ++|.+++.....  .++......++.|++.++.|+|..   +++|+|+++.|++++....+++.|||++...
T Consensus        88 ~~l~~~~~~~~~--~~~~~~~~~~~~qi~~aL~~lH~~---~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~  154 (309)
T cd07872          88 KDLKQYMDDCGN--IMSMHNVKIFLYQILRGLAYCHRR---KVLHRDLKPQNLLINERGELKLADFGLARAK  154 (309)
T ss_pred             CCHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEECCCCCEEECccccceec
Confidence            567777765433  477888888999999999999988   9999999999999999999999999988654

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.21  E-value=3.9e-11  Score=69.91  Aligned_cols=54  Identities=30%  Similarity=0.545  Sum_probs=51.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123           19 LNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus        19 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      +.+.++..++..+..|+.|+|..   +++|+|+++.|+++...+.+||+|||.+...
T Consensus       207 ls~~~Ar~ylrDvv~GLEYLH~Q---giiHRDIKPsNLLl~~~g~VKIsDFGVs~~~  260 (576)
T KOG0585|consen  207 LSEQQARKYLRDVVLGLEYLHYQ---GIIHRDIKPSNLLLSSDGTVKISDFGVSNEF  260 (576)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhc---CeeccccchhheEEcCCCcEEeeccceeeec
Confidence            77889999999999999999999   9999999999999999999999999988755

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.21  E-value=9.8e-11  Score=67.73  Aligned_cols=72  Identities=31%  Similarity=0.424  Sum_probs=64.2

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcC-----CCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHD-----CTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      |+|||.+||...    .+.......++..+++|+.++|..     +++.+.|+|++..||++.++..+-|.|+|++-...
T Consensus       292 e~GSL~DyL~r~----tv~~~~ml~LalS~AsGLaHLH~eI~GTqgKPaIAHRDlKSKNILVKkn~~C~IADLGLAv~h~  367 (513)
T KOG2052|consen  292 EHGSLYDYLNRN----TVTTEGMLKLALSIASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHD  367 (513)
T ss_pred             cCCcHHHHHhhc----cCCHHHHHHHHHHHhhhHHHHHHHHhcCCCCchhhccccccccEEEccCCcEEEeeceeeEEec
Confidence            579999999873    688999999999999999999976     57789999999999999999999999999987654


Q ss_pred             C
Q 040123           77 V   77 (84)
Q Consensus        77 ~   77 (84)
                      .
T Consensus       368 ~  368 (513)
T KOG2052|consen  368 S  368 (513)
T ss_pred             c
Confidence            3

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=99.21  E-value=1.4e-10  Score=63.32  Aligned_cols=68  Identities=31%  Similarity=0.455  Sum_probs=59.6

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      ++++|.+++....   .+++.....++.|++.++.++|..   +++|+++++.|++++.+..+++.|||++..+
T Consensus        89 ~~~~L~~~l~~~~---~l~~~~~~~~~~qi~~~l~~LH~~---~i~H~~l~p~nil~~~~~~~~l~dfg~~~~~  156 (266)
T cd06651          89 PGGSVKDQLKAYG---ALTESVTRKYTRQILEGMSYLHSN---MIVHRDIKGANILRDSAGNVKLGDFGASKRL  156 (266)
T ss_pred             CCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEECCCCCEEEccCCCcccc
Confidence            4678888887644   478888889999999999999988   9999999999999998889999999988654

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=99.21  E-value=2e-10  Score=62.42  Aligned_cols=71  Identities=34%  Similarity=0.628  Sum_probs=61.8

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      ++++|.+++....+. .+++.....++.+++.++.++|..   +++|+++++.|++++.+..+++.|||.+..+.
T Consensus        84 ~~~~L~~~i~~~~~~-~~~~~~~~~~~~~i~~al~~lh~~---~i~h~di~p~nili~~~~~~~l~d~g~~~~~~  154 (261)
T cd05034          84 SKGSLLDFLKSGEGK-KLRLPQLVDMAAQIAEGMAYLESR---NYIHRDLAARNILVGENLVCKIADFGLARLIE  154 (261)
T ss_pred             CCCCHHHHHhccccC-CCCHHHHHHHHHHHHHHHHHHHhC---CcccCCcchheEEEcCCCCEEECccccceecc
Confidence            578999998764422 578889999999999999999988   99999999999999999999999999877653

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=99.21  E-value=3e-10  Score=62.88  Aligned_cols=69  Identities=30%  Similarity=0.406  Sum_probs=60.7

Q ss_pred             CCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            3 RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         3 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +|+|.+++.....  .+++.....++.|++.++.|+|..   +++|+++++.|++++.+..+++.|||++....
T Consensus        85 ~~~L~~~i~~~~~--~~~~~~~~~~~~qi~~al~~lH~~---~i~H~dl~p~nill~~~~~~~l~dfg~~~~~~  153 (298)
T cd07841          85 ETDLEKVIKDKSI--VLTPADIKSYMLMTLRGLEYLHSN---WILHRDLKPNNLLIASDGVLKLADFGLARSFG  153 (298)
T ss_pred             CCCHHHHHhccCC--CCCHHHHHHHHHHHHHHHHHHHhC---CeeecCCChhhEEEcCCCCEEEccceeeeecc
Confidence            5788888875431  588899999999999999999988   99999999999999999999999999887654

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=99.21  E-value=2.3e-10  Score=62.99  Aligned_cols=71  Identities=28%  Similarity=0.460  Sum_probs=60.1

Q ss_pred             CCCcHHHHHhcCCC------------cccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEccc
Q 040123            2 ERGSLFCVLRDDDE------------AIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADF   69 (84)
Q Consensus         2 ~~g~L~~~l~~~~~------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~   69 (84)
                      ++|+|.+++.....            ...+++.....++.|++.++.|+|..   +++|+++++.|+++..+..+++.||
T Consensus        90 ~~~~L~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~---~i~H~dlkp~nil~~~~~~~kL~df  166 (280)
T cd05092          90 RHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIASGMVYLASL---HFVHRDLATRNCLVGQGLVVKIGDF  166 (280)
T ss_pred             CCCCHHHHHHhcCcchhhhcccccCCccccCHHHHHHHHHHHHHHHHHHHHC---CeecccccHhhEEEcCCCCEEECCC
Confidence            57888888876432            11467888899999999999999988   9999999999999999899999999


Q ss_pred             ccceec
Q 040123           70 GTARLL   75 (84)
Q Consensus        70 g~~~~~   75 (84)
                      |++..+
T Consensus       167 g~~~~~  172 (280)
T cd05092         167 GMSRDI  172 (280)
T ss_pred             CceeEc
Confidence            987644

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=99.21  E-value=2.1e-10  Score=64.87  Aligned_cols=54  Identities=31%  Similarity=0.501  Sum_probs=48.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123           19 LNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus        19 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      +++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++...
T Consensus       176 ~~~~~~~~~~~qi~~al~~lH~~---~i~H~dikp~Nil~~~~~~~kl~dfg~~~~~  229 (343)
T cd05103         176 LTLEDLICYSFQVAKGMEFLASR---KCIHRDLAARNILLSENNVVKICDFGLARDI  229 (343)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhC---CeecCCCccCeEEEcCCCcEEEEeccccccc
Confidence            56677788899999999999988   9999999999999999899999999988754

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=99.21  E-value=1.1e-10  Score=63.62  Aligned_cols=69  Identities=35%  Similarity=0.472  Sum_probs=60.9

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      +++++|.+++.+..   .+++.....++.|++.++.++|..   +++|+++++.|++++.+..+++.|||++...
T Consensus        84 ~~~~~L~~~l~~~~---~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~  152 (265)
T cd06631          84 VPGGSISSILNRFG---PLPEPVFCKYTKQILDGVAYLHNN---CVVHRDIKGNNVMLMPNGIIKLIDFGCARRL  152 (265)
T ss_pred             CCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CcccCCcCHHhEEECCCCeEEeccchhhHhh
Confidence            35789999997654   578888899999999999999988   9999999999999999999999999987654

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.21  E-value=3.8e-11  Score=72.62  Aligned_cols=69  Identities=28%  Similarity=0.453  Sum_probs=61.3

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEccccccee
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARL   74 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~   74 (84)
                      |.||..+..+-..+.  .+.+.++..++.|++.++.|+|+.   .++|+|+++.||++..++.+++.|||++..
T Consensus       111 C~GGAVDaimlEL~r--~LtE~QIqvvc~q~ldALn~LHs~---~iIHRDLKAGNiL~TldGdirLADFGVSAK  179 (1187)
T KOG0579|consen  111 CGGGAVDAIMLELGR--VLTEDQIQVVCYQVLDALNWLHSQ---NIIHRDLKAGNILLTLDGDIRLADFGVSAK  179 (1187)
T ss_pred             cCCchHhHHHHHhcc--ccchHHHHHHHHHHHHHHHHHhhc---chhhhhccccceEEEecCcEeeeccccccc
Confidence            467877777766554  689999999999999999999999   999999999999999999999999998754

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=99.21  E-value=1.7e-10  Score=63.20  Aligned_cols=72  Identities=25%  Similarity=0.440  Sum_probs=60.1

Q ss_pred             CCCcHHHHHhcCCCc-------ccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEccccccee
Q 040123            2 ERGSLFCVLRDDDEA-------IELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARL   74 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~-------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~   74 (84)
                      ++|+|.+++......       ..+++.....++.|++.++.|+|..   +++|+++++.|++++.+..+++.|||++..
T Consensus        92 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~di~p~nill~~~~~~kl~dfg~~~~  168 (277)
T cd05032          92 AKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMAYLAAK---KFVHRDLAARNCMVAEDLTVKIGDFGMTRD  168 (277)
T ss_pred             CCCCHHHHHHhcccchhhccCCCCCCHHHHHHHHHHHHHHHHHHHhC---CccccccChheEEEcCCCCEEECCcccchh
Confidence            468999988753321       1356778888999999999999988   999999999999999999999999998765


Q ss_pred             cc
Q 040123           75 LH   76 (84)
Q Consensus        75 ~~   76 (84)
                      +.
T Consensus       169 ~~  170 (277)
T cd05032         169 IY  170 (277)
T ss_pred             hc
Confidence            43

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=99.21  E-value=2.6e-10  Score=63.16  Aligned_cols=71  Identities=28%  Similarity=0.519  Sum_probs=60.0

Q ss_pred             CCCcHHHHHhcCCC--------cccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccce
Q 040123            2 ERGSLFCVLRDDDE--------AIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTAR   73 (84)
Q Consensus         2 ~~g~L~~~l~~~~~--------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~   73 (84)
                      ++|+|.+++.....        ...+++.....++.|++.++.|+|..   +++|+++++.|++++.+..+++.|||++.
T Consensus       102 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~---~i~H~dlkp~Nili~~~~~~~l~dfg~~~  178 (296)
T cd05095         102 ENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMATQIASGMKYLSSL---NFVHRDLATRNCLVGKNYTIKIADFGMSR  178 (296)
T ss_pred             CCCcHHHHHHhcCcccccccccccccCHHHHHHHHHHHHHHHHHHHHC---CeecccCChheEEEcCCCCEEeccCcccc
Confidence            57899988876431        11356778899999999999999988   99999999999999988999999999987


Q ss_pred             ec
Q 040123           74 LL   75 (84)
Q Consensus        74 ~~   75 (84)
                      .+
T Consensus       179 ~~  180 (296)
T cd05095         179 NL  180 (296)
T ss_pred             cc
Confidence            54

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=99.21  E-value=1.3e-10  Score=64.44  Aligned_cols=68  Identities=31%  Similarity=0.543  Sum_probs=59.6

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      +++++|.+++.+.    .+++.....++.|++.++.|+|..   +++|+++++.|++++.+..+++.|||++...
T Consensus        99 ~~~~~L~~~~~~~----~~~~~~~~~i~~ql~~aL~~LH~~---gi~H~dLkp~Nill~~~~~~kl~dfg~~~~~  166 (296)
T cd06654          99 LAGGSLTDVVTET----CMDEGQIAAVCRECLQALEFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQI  166 (296)
T ss_pred             cCCCCHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEcCCCCEEECccccchhc
Confidence            3578999988642    477888899999999999999988   9999999999999999899999999987654

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=99.20  E-value=2.9e-11  Score=72.77  Aligned_cols=71  Identities=32%  Similarity=0.457  Sum_probs=64.8

Q ss_pred             CCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccCC
Q 040123            3 RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVD   78 (84)
Q Consensus         3 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~~   78 (84)
                      -|.|..||..+..  .++..++..++.|++.++.|+++.   .++|+|+.++|++......+|+.|||+++.+...
T Consensus       474 ~GELr~yLq~nk~--sL~l~tL~ly~~Qi~talaYLeSk---rfVHRDIAaRNiLVsSp~CVKLaDFGLSR~~ed~  544 (974)
T KOG4257|consen  474 LGELREYLQQNKD--SLPLRTLTLYCYQICTALAYLESK---RFVHRDIAARNILVSSPQCVKLADFGLSRYLEDD  544 (974)
T ss_pred             chhHHHHHHhccc--cchHHHHHHHHHHHHHHHHHHHhh---chhhhhhhhhheeecCcceeeecccchhhhcccc
Confidence            5889999998665  688899999999999999999999   9999999999999999999999999999987654

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=99.20  E-value=2.2e-10  Score=63.23  Aligned_cols=72  Identities=24%  Similarity=0.451  Sum_probs=59.0

Q ss_pred             CCCCcHHHHHhcCCC-------cccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccce
Q 040123            1 MERGSLFCVLRDDDE-------AIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTAR   73 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~-------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~   73 (84)
                      +++|+|.+++.+...       ...........++.|++.++.|+|..   +++|+++++.|++++.+..+++.|||+++
T Consensus        91 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~---~i~H~dikp~nili~~~~~~~L~Dfg~~~  167 (288)
T cd05061          91 MAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLNAK---KFVHRDLAARNCMVAHDFTVKIGDFGMTR  167 (288)
T ss_pred             CCCCCHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHhC---CCcCCCCChheEEEcCCCcEEECcCCccc
Confidence            357899999975321       11234567778899999999999988   99999999999999999999999999876


Q ss_pred             ec
Q 040123           74 LL   75 (84)
Q Consensus        74 ~~   75 (84)
                      .+
T Consensus       168 ~~  169 (288)
T cd05061         168 DI  169 (288)
T ss_pred             cc
Confidence            44

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.20  E-value=2.1e-10  Score=62.42  Aligned_cols=71  Identities=23%  Similarity=0.372  Sum_probs=58.8

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCc--------EEEcccccc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLE--------ASVADFGTA   72 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--------~~i~~~g~~   72 (84)
                      +++|+|.+++.....  .+++.....++.|++.++.|+|..   +++|+|+++.|+++..+..        +++.|||++
T Consensus        81 ~~~g~L~~~l~~~~~--~~~~~~~~~~~~qi~~~l~~lH~~---~iiH~dlkp~nili~~~~~~~~~~~~~~~l~d~g~~  155 (258)
T cd05078          81 VKFGSLDTYLKKNKN--LINISWKLEVAKQLAWALHFLEDK---GLTHGNVCAKNVLLIREEDRKTGNPPFIKLSDPGIS  155 (258)
T ss_pred             CCCCcHHHHHhcCCC--CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCccceEEEecccccccCCCceEEecccccc
Confidence            357899999976543  578888889999999999999988   9999999999999976543        588999877


Q ss_pred             eecc
Q 040123           73 RLLH   76 (84)
Q Consensus        73 ~~~~   76 (84)
                      ....
T Consensus       156 ~~~~  159 (258)
T cd05078         156 ITVL  159 (258)
T ss_pred             cccC
Confidence            5443

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=99.20  E-value=2e-10  Score=63.79  Aligned_cols=68  Identities=31%  Similarity=0.529  Sum_probs=59.9

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      ++++|.+++.+.    .+++.....++.+++.++.++|..   +++|+++++.|++++.+..+++.|||++....
T Consensus        99 ~~~~L~~~~~~~----~~~~~~~~~~~~~l~~~L~~LH~~---~i~H~dL~p~Nili~~~~~~~l~Dfg~~~~~~  166 (297)
T cd06656          99 AGGSLTDVVTET----CMDEGQIAAVCRECLQALDFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQIT  166 (297)
T ss_pred             CCCCHHHHHHhC----CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEECcCccceEcc
Confidence            578898888643    477888899999999999999988   99999999999999999999999999887654

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=99.20  E-value=9.2e-11  Score=63.54  Aligned_cols=68  Identities=40%  Similarity=0.561  Sum_probs=60.2

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      ++++|.+++....   .++...+..++.|++.++.++|+.   +++|+|+++.|++++.+...++.|||.+..+
T Consensus        81 ~~~~L~~~l~~~~---~~~~~~~~~~~~qi~~~L~~Lh~~---~i~H~dikp~NIl~~~~~~~~l~Dfg~~~~~  148 (260)
T PF00069_consen   81 PGGSLQDYLQKNK---PLSEEEILKIAYQILEALAYLHSK---GIVHRDIKPENILLDENGEVKLIDFGSSVKL  148 (260)
T ss_dssp             TTEBHHHHHHHHS---SBBHHHHHHHHHHHHHHHHHHHHT---TEEESSBSGGGEEESTTSEEEESSGTTTEES
T ss_pred             ccccccccccccc---cccccccccccccccccccccccc---ccccccccccccccccccccccccccccccc
Confidence            4568888887433   588999999999999999999998   9999999999999999999999999988653

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.20  E-value=1.4e-10  Score=63.21  Aligned_cols=68  Identities=29%  Similarity=0.447  Sum_probs=59.8

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      ++++|.+++....   .+++.....++.|++.++.++|..   +++|+++++.|++++.+..+++.|||++...
T Consensus        89 ~~~~L~~~~~~~~---~l~~~~~~~~~~~i~~al~~LH~~---~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~  156 (264)
T cd06653          89 PGGSIKDQLKAYG---ALTENVTRRYTRQILQGVSYLHSN---MIVHRDIKGANILRDSAGNVKLGDFGASKRI  156 (264)
T ss_pred             CCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEEcCCCCEEECcccccccc
Confidence            4678888887544   477888889999999999999988   9999999999999999889999999988754

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=99.20  E-value=2.3e-10  Score=62.03  Aligned_cols=73  Identities=23%  Similarity=0.370  Sum_probs=62.6

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      +++|+|.+++.+... ..+++.....++.|++.++.++|..   +++|+++++.|++++.+..+++.|||++.....
T Consensus        81 ~~~~~L~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~lh~~---~i~h~dl~p~ni~~~~~~~~kl~d~~~~~~~~~  153 (256)
T cd08221          81 ANGGTLYDKIVRQKG-QLFEEEMVLWYLFQIVSAVSYIHKA---GILHRDIKTLNIFLTKAGLIKLGDFGISKILGS  153 (256)
T ss_pred             cCCCcHHHHHHhccc-cCCCHHHHHHHHHHHHHHHHHHHhC---CccccCCChHhEEEeCCCCEEECcCcceEEccc
Confidence            357899999876532 2578889999999999999999988   999999999999999999999999998876543

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=99.20  E-value=2.6e-10  Score=62.43  Aligned_cols=70  Identities=23%  Similarity=0.332  Sum_probs=60.2

Q ss_pred             CCCcHHHHHhcCCCc------ccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEccccccee
Q 040123            2 ERGSLFCVLRDDDEA------IELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARL   74 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~   74 (84)
                      ++|+|.+++......      ..+++.....++.|++.++.|+|..   +++|+|+++.|++++.....++.+||++..
T Consensus        91 ~~~~L~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH~~---~i~H~dlkp~Nili~~~~~~~l~~~~~~~~  166 (275)
T cd05046          91 DLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIALGMDHLSNA---RFVHRDLAARNCLVSSQREVKVSLLSLSKD  166 (275)
T ss_pred             CCCcHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHhhhc---CcccCcCccceEEEeCCCcEEEcccccccc
Confidence            578999998764421      1478899999999999999999988   999999999999999999999999998754

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=99.20  E-value=4.1e-10  Score=62.25  Aligned_cols=68  Identities=29%  Similarity=0.502  Sum_probs=58.9

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEccccccee
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARL   74 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~   74 (84)
                      ++++|..++.+...  .+++.....++.|++.++.++|..   +++|+++++.|++++.+..+++.|||++..
T Consensus        92 ~~~~l~~~~~~~~~--~l~~~~~~~~~~ql~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~kl~dfg~~~~  159 (292)
T cd06644          92 PGGAVDAIMLELDR--GLTEPQIQVICRQMLEALQYLHSM---KIIHRDLKAGNVLLTLDGDIKLADFGVSAK  159 (292)
T ss_pred             CCCcHHHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHhcC---CeeecCCCcceEEEcCCCCEEEccCcccee
Confidence            56788877765332  578899999999999999999988   999999999999999889999999998754

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=99.20  E-value=2.7e-10  Score=62.32  Aligned_cols=68  Identities=26%  Similarity=0.441  Sum_probs=60.6

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      ++|+|.+++++..   .+++.....++.|++.++.++|..   +++|+++++.|++++.+..+++.|||++...
T Consensus        91 ~~~~L~~~l~~~~---~l~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~~~nil~~~~~~~~l~d~~~~~~~  158 (272)
T cd06629          91 PGGSIGSCLRTYG---RFEEQLVRFFTEQVLEGLAYLHSK---GILHRDLKADNLLVDADGICKISDFGISKKS  158 (272)
T ss_pred             CCCcHHHHHhhcc---CCCHHHHHHHHHHHHHHHHHHhhC---CeeecCCChhhEEEcCCCeEEEeeccccccc
Confidence            5789999887654   588888888999999999999988   9999999999999999999999999987654

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=99.20  E-value=3e-10  Score=61.43  Aligned_cols=71  Identities=32%  Similarity=0.545  Sum_probs=61.4

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      ++++|.+++...... .+++.....++.|++.++.++|..   +++|+++++.|++++....+++.|||++....
T Consensus        84 ~~~~l~~~~~~~~~~-~~~~~~~~~~~~ql~~~l~~lh~~---~~~h~dl~~~nil~~~~~~~~l~dfg~~~~~~  154 (258)
T smart00219       84 EGGDLLDYLRKNRPK-ELSLSDLLSFALQIARGMEYLESK---NFIHRDLAARNCLVGENLVVKISDFGLSRDLY  154 (258)
T ss_pred             CCCCHHHHHHhhhhc-cCCHHHHHHHHHHHHHHHHHHhcC---CeeecccccceEEEccCCeEEEcccCCceecc
Confidence            468899888764421 288999999999999999999988   99999999999999999999999999887554

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=99.20  E-value=3.4e-10  Score=62.07  Aligned_cols=72  Identities=32%  Similarity=0.521  Sum_probs=61.0

Q ss_pred             CCCCcHHHHHhcCCC-----------cccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEccc
Q 040123            1 MERGSLFCVLRDDDE-----------AIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADF   69 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~-----------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~   69 (84)
                      +++|+|.+++.....           ...+++.....++.|++.++.++|..   +++|+++++.|++++.+..++++||
T Consensus        90 ~~~~~L~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~---~i~h~dlkp~nili~~~~~~kl~d~  166 (280)
T cd05049          90 MEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVYLASQ---HFVHRDLATRNCLVGYDLVVKIGDF  166 (280)
T ss_pred             CCCCCHHHHHHhcCCchhhhcccccccccccHHHHHHHHHHHHHHHHHHhhC---CeeccccccceEEEcCCCeEEECCc
Confidence            357899999876431           12467788889999999999999988   9999999999999999999999999


Q ss_pred             ccceec
Q 040123           70 GTARLL   75 (84)
Q Consensus        70 g~~~~~   75 (84)
                      |++..+
T Consensus       167 g~~~~~  172 (280)
T cd05049         167 GMSRDV  172 (280)
T ss_pred             ccceec
Confidence            988654

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.19  E-value=1.3e-10  Score=70.24  Aligned_cols=73  Identities=32%  Similarity=0.449  Sum_probs=63.2

Q ss_pred             CCCCcHHHHHhcCC---C---c-------ccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEc
Q 040123            1 MERGSLFCVLRDDD---E---A-------IELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVA   67 (84)
Q Consensus         1 ~~~g~L~~~l~~~~---~---~-------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~   67 (84)
                      ++.|+|..|++...   .   .       ..+....+..++.|++.|+.|+.+.   .++|+|+.++|+++..+..+|+.
T Consensus       384 ~~~G~L~~~Lr~~r~~~~~~~~~~~~~~~~~L~~~dLlsfa~QIa~GMe~L~~~---~~vHRDLAaRNVLi~~~~~~kIa  460 (609)
T KOG0200|consen  384 AEHGDLLEFLRKKRVTESIDGSGVFPNERDALTTKDLLSFAYQIANGMEYLASV---PCVHRDLAARNVLITKNKVIKIA  460 (609)
T ss_pred             ccCCcHHHHHHhccccccccccCCCccccCCcCHHHHHHHHHHHHHHHHHHhhC---CccchhhhhhhEEecCCCEEEEc
Confidence            35799999999766   0   0       1377889999999999999999988   99999999999999999999999


Q ss_pred             ccccceecc
Q 040123           68 DFGTARLLH   76 (84)
Q Consensus        68 ~~g~~~~~~   76 (84)
                      |||+++...
T Consensus       461 DFGlar~~~  469 (609)
T KOG0200|consen  461 DFGLARDHY  469 (609)
T ss_pred             cccceeccC
Confidence            999998544

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=99.19  E-value=2.5e-10  Score=62.83  Aligned_cols=71  Identities=25%  Similarity=0.427  Sum_probs=59.0

Q ss_pred             CCCcHHHHHhcCCC--------------cccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEc
Q 040123            2 ERGSLFCVLRDDDE--------------AIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVA   67 (84)
Q Consensus         2 ~~g~L~~~l~~~~~--------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~   67 (84)
                      .+|+|.+++.....              ...+++.....++.+++.++.|+|..   +++|+++++.|++++.+..+++.
T Consensus        90 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~---~i~H~dlkp~nili~~~~~~kl~  166 (283)
T cd05090          90 NQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAIQIAAGMEYLSSH---FFVHKDLAARNILIGEQLHVKIS  166 (283)
T ss_pred             CCCcHHHHHHhcCCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHhc---CeehhccccceEEEcCCCcEEec
Confidence            46788888853221              11367788888999999999999988   99999999999999999999999


Q ss_pred             ccccceec
Q 040123           68 DFGTARLL   75 (84)
Q Consensus        68 ~~g~~~~~   75 (84)
                      |||++...
T Consensus       167 dfg~~~~~  174 (283)
T cd05090         167 DLGLSREI  174 (283)
T ss_pred             cccccccc
Confidence            99988755

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=99.19  E-value=2.8e-10  Score=62.55  Aligned_cols=70  Identities=23%  Similarity=0.350  Sum_probs=58.9

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      +++.+..++....   .+++.....++.|++.++.|+|..   +++|+++++.|++++.+..+++.|||++..+..
T Consensus        83 ~~~~l~~~~~~~~---~~~~~~~~~~~~ql~~~l~~LH~~---~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~  152 (286)
T cd07847          83 DHTVLNELEKNPR---GVPEHLIKKIIWQTLQAVNFCHKH---NCIHRDVKPENILITKQGQIKLCDFGFARILTG  152 (286)
T ss_pred             CccHHHHHHhCCC---CCCHHHHHHHHHHHHHHHHHHHHC---CceecCCChhhEEEcCCCcEEECccccceecCC
Confidence            4555665554432   588999999999999999999988   999999999999999889999999999876643

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=99.19  E-value=4e-10  Score=61.33  Aligned_cols=73  Identities=18%  Similarity=0.301  Sum_probs=61.7

Q ss_pred             CCCCcHHHHHhcCC-CcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDD-EAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++|+|..++.... ....+++.....++.+++.++.++|..   +++|+++++.|++++.+..+++.|||++..+.
T Consensus        84 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~---~i~h~dl~p~nil~~~~~~~~l~d~~~~~~~~  157 (267)
T cd08224          84 ADAGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSALEHMHSK---RIMHRDIKPANVFITATGVVKLGDLGLGRFFS  157 (267)
T ss_pred             CCCCCHHHHHHHhcccCCCcCHHHHHHHHHHHHHHHHHHHhC---CEecCCcChhhEEECCCCcEEEeccceeeecc
Confidence            35789998887532 122578889999999999999999988   99999999999999999999999999876543

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=99.19  E-value=4.2e-10  Score=61.53  Aligned_cols=72  Identities=28%  Similarity=0.496  Sum_probs=59.0

Q ss_pred             CCCcHHHHHhcCC---CcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            2 ERGSLFCVLRDDD---EAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         2 ~~g~L~~~l~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      .+|+|..++....   ....++......++.|++.++.|+|..   +++|+|+++.|+++..+..+++.|||++..+.
T Consensus        90 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~nili~~~~~~kl~dfg~~~~~~  164 (273)
T cd05074          90 KHGDLHTFLLMSRIGEEPFTLPLQTLVRFMIDIASGMEYLSSK---NFIHRDLAARNCMLNENMTVCVADFGLSKKIY  164 (273)
T ss_pred             CCCcHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHhC---CEeecccchhhEEEcCCCCEEECccccccccc
Confidence            3577877764321   122467888899999999999999988   99999999999999988999999999887653

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=99.18  E-value=3.6e-10  Score=62.24  Aligned_cols=72  Identities=25%  Similarity=0.378  Sum_probs=60.3

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhc-CCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHH-DCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      +++++|..++........+++.....++.+++.++.|+|. .   +++|+++++.|++++.+..+++.|||.+..+
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~---~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~  153 (286)
T cd06622          81 MDAGSLDKLYAGGVATEGIPEDVLRRITYAVVKGLKFLKEEH---NIIHRDVKPTNVLVNGNGQVKLCDFGVSGNL  153 (286)
T ss_pred             cCCCCHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhcC---CEeeCCCCHHHEEECCCCCEEEeecCCcccc
Confidence            3578888888764222257889999999999999999995 4   8999999999999999889999999987654

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=99.18  E-value=2.9e-10  Score=62.52  Aligned_cols=68  Identities=26%  Similarity=0.401  Sum_probs=58.8

Q ss_pred             CCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            3 RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         3 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      .++|.+++.+...  .+++.....++.|++.++.|+|..   +++|+++++.|++++.+..+++.|||++..+
T Consensus        82 ~~~l~~~~~~~~~--~~~~~~~~~~~~qi~~al~~LH~~---~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~  149 (284)
T cd07839          82 DQDLKKYFDSCNG--DIDPEIVKSFMFQLLKGLAFCHSH---NVLHRDLKPQNLLINKNGELKLADFGLARAF  149 (284)
T ss_pred             CCCHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEEcCCCcEEECccchhhcc
Confidence            3577777765433  588999999999999999999988   9999999999999999999999999988754

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=99.18  E-value=2.3e-10  Score=63.43  Aligned_cols=68  Identities=35%  Similarity=0.554  Sum_probs=58.7

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      +++++|.+++...    .+++.....++.|++.++.|+|..   +++|+++++.|++++.+..+++.|||++...
T Consensus       101 ~~~~~L~~~~~~~----~l~~~~~~~~~~qi~~~l~~LH~~---~ivH~dlkp~Nill~~~~~~kL~dfg~~~~~  168 (292)
T cd06658         101 LEGGALTDIVTHT----RMNEEQIATVCLSVLRALSYLHNQ---GVIHRDIKSDSILLTSDGRIKLSDFGFCAQV  168 (292)
T ss_pred             CCCCcHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHHC---CEeecCCCHHHEEEcCCCCEEEccCcchhhc
Confidence            3567888877532    478888999999999999999988   9999999999999999899999999987644

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=99.18  E-value=8.3e-11  Score=66.27  Aligned_cols=74  Identities=27%  Similarity=0.451  Sum_probs=58.2

Q ss_pred             cHHHHHhcCC-CcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCC-CcEEEcccccceeccCCCCC
Q 040123            5 SLFCVLRDDD-EAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLN-LEASVADFGTARLLHVDSSN   81 (84)
Q Consensus         5 ~L~~~l~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~i~~~g~~~~~~~~~~~   81 (84)
                      +|.++++..- .+..++...+..+..|+..|+.|+|..   ++.|+|++|.|++++.. +.+|+.|||.|+.+...+..
T Consensus       107 tL~~~~r~~~~~~~~mp~~~iKLYt~Qlfrgl~yLh~~---~IcHRDIKPqNlLvD~~tg~LKicDFGSAK~L~~~epn  182 (364)
T KOG0658|consen  107 TLYRVIRHYTRANQRMPLLEIKLYTYQLFRGLAYLHSH---GICHRDIKPQNLLVDPDTGVLKICDFGSAKVLVKGEPN  182 (364)
T ss_pred             HHHHHHHHHhhcCCCCceeeeHHHHHHHHHHHHHHHhc---CcccCCCChheEEEcCCCCeEEeccCCcceeeccCCCc
Confidence            4555565310 011466677788899999999999988   99999999999999865 78999999999988766553

>PTZ00284 protein kinase; Provisional

Probab=99.18  E-value=2.2e-10  Score=67.23  Aligned_cols=66  Identities=20%  Similarity=0.315  Sum_probs=55.7

Q ss_pred             CCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhc-CCCCCeEecCCCCCcEEeCCCC----------------cEE
Q 040123            3 RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHH-DCTLSVVHRDISSNNILLDLNL----------------EAS   65 (84)
Q Consensus         3 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~----------------~~~   65 (84)
                      +++|.+++.+..   .+++..+..++.|++.++.|+|. .   +++|+|+++.|++++...                .++
T Consensus       215 g~~l~~~l~~~~---~l~~~~~~~i~~qi~~aL~yLH~~~---gIiHrDlKP~NILl~~~~~~~~~~~~~~~~~~~~~vk  288 (467)
T PTZ00284        215 GPCLLDWIMKHG---PFSHRHLAQIIFQTGVALDYFHTEL---HLMHTDLKPENILMETSDTVVDPVTNRALPPDPCRVR  288 (467)
T ss_pred             CCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHhcC---CeecCCCCHHHEEEecCCcccccccccccCCCCceEE
Confidence            567888887654   58889999999999999999996 5   899999999999997543                489


Q ss_pred             Eccccccee
Q 040123           66 VADFGTARL   74 (84)
Q Consensus        66 i~~~g~~~~   74 (84)
                      +.|||.+..
T Consensus       289 l~DfG~~~~  297 (467)
T PTZ00284        289 ICDLGGCCD  297 (467)
T ss_pred             ECCCCcccc
Confidence            999997643

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=99.18  E-value=3.8e-10  Score=61.17  Aligned_cols=69  Identities=29%  Similarity=0.509  Sum_probs=60.1

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      ++|+|.+++....+  .+++.....++.+++.++.++|..   +++|+++++.|++++.+..+++.|||.+...
T Consensus        82 ~~~~L~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~lH~~---~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~  150 (256)
T cd05112          82 EHGCLSDYLRAQRG--KFSQETLLGMCLDVCEGMAYLESS---NVIHRDLAARNCLVGENQVVKVSDFGMTRFV  150 (256)
T ss_pred             CCCcHHHHHHhCcc--CCCHHHHHHHHHHHHHHHHHHHHC---CccccccccceEEEcCCCeEEECCCcceeec
Confidence            57889888875443  478888899999999999999988   9999999999999998889999999987654

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=99.18  E-value=2.9e-10  Score=61.72  Aligned_cols=70  Identities=30%  Similarity=0.532  Sum_probs=62.4

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhc-CCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHH-DCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      ++++|.+++....   .+++.....++.|++.++.++|. .   +++|+++++.|++++.+..+++.|||.+..+..
T Consensus        82 ~~~~L~~~l~~~~---~l~~~~~~~~~~~l~~~l~~lh~~~---~~~H~~l~~~ni~~~~~~~~~l~df~~~~~~~~  152 (264)
T cd06623          82 DGGSLADLLKKVG---KIPEPVLAYIARQILKGLDYLHTKR---HIIHRDIKPSNLLINSKGEVKIADFGISKVLEN  152 (264)
T ss_pred             CCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHhccC---CCccCCCCHHHEEECCCCCEEEccCccceeccc
Confidence            5789999998654   58899999999999999999998 7   999999999999999999999999998876643

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=99.18  E-value=2.8e-10  Score=61.98  Aligned_cols=69  Identities=29%  Similarity=0.485  Sum_probs=59.6

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCC-cEEEcccccceecc
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNL-EASVADFGTARLLH   76 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~i~~~g~~~~~~   76 (84)
                      ++++|.+++++..   .+++.....++.|++.++.++|..   +++|+++++.|++++.+. .+++.|||.+..+.
T Consensus        86 ~~~~L~~~l~~~~---~~~~~~~~~~~~ql~~al~~LH~~---~i~H~~i~~~nil~~~~~~~~~l~dfg~~~~~~  155 (268)
T cd06630          86 AGGSVSHLLSKYG---AFKEAVIINYTEQLLRGLSYLHEN---QIIHRDVKGANLLIDSTGQRLRIADFGAAARLA  155 (268)
T ss_pred             CCCcHHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEEcccccccccc
Confidence            5788999887654   578889999999999999999998   999999999999997654 68999999876654

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=99.18  E-value=2.7e-10  Score=61.92  Aligned_cols=74  Identities=31%  Similarity=0.478  Sum_probs=62.7

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      +++++|.+++........+++.....++.|++.++.++|..   +++|+++++.|++++.+..+++.|||++..+..
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lh~~---~i~h~~l~p~ni~~~~~~~~~l~df~~~~~~~~  154 (267)
T cd06610          81 LSGGSLLDIMKSSYPRGGLDEAIIATVLKEVLKGLEYLHSN---GQIHRDIKAGNILLGEDGSVKIADFGVSASLAD  154 (267)
T ss_pred             cCCCcHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHhEEEcCCCCEEEcccchHHHhcc
Confidence            35788999987643322578899999999999999999988   999999999999999999999999998765543

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=99.18  E-value=2.2e-10  Score=64.43  Aligned_cols=68  Identities=28%  Similarity=0.505  Sum_probs=59.1

Q ss_pred             CCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            3 RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         3 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++|.+++....   .+++.....++.|++.++.|+|..   +++|+++++.|++++.+..+++.|||++..+.
T Consensus        89 ~~~L~~~l~~~~---~~~~~~~~~~~~qi~~aL~~LH~~---givH~dlkp~Nili~~~~~~kl~Dfg~a~~~~  156 (332)
T cd07857          89 EADLHQIIRSGQ---PLTDAHFQSFIYQILCGLKYIHSA---NVLHRDLKPGNLLVNADCELKICDFGLARGFS  156 (332)
T ss_pred             cCCHHHHHhcCC---CCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHeEEcCCCCEEeCcCCCceecc
Confidence            357777776544   588899999999999999999988   99999999999999999999999999887543

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=99.17  E-value=3e-10  Score=61.48  Aligned_cols=69  Identities=33%  Similarity=0.436  Sum_probs=60.7

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      ++++|.+++.+..   .+++.....++.|++.++.++|..   +++|+++++.|++++.+..+++.|||++....
T Consensus        85 ~~~~L~~~~~~~~---~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~~~ni~~~~~~~~kl~d~~~~~~~~  153 (258)
T cd06632          85 PGGSLAKLLKKYG---SFPEPVIRLYTRQILLGLEYLHDR---NTVHRDIKGANILVDTNGVVKLADFGMAKQVV  153 (258)
T ss_pred             CCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEccCccceecc
Confidence            5788999987654   478888889999999999999988   99999999999999999999999999876543

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=99.17  E-value=2.9e-10  Score=61.99  Aligned_cols=71  Identities=20%  Similarity=0.312  Sum_probs=60.1

Q ss_pred             CCCcHHHHHhcCCC-cccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            2 ERGSLFCVLRDDDE-AIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         2 ~~g~L~~~l~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      ++++|.+++..... ...+++.....++.+++.++.|+|..   +++|+++++.|++++.+..+++.|||.+..+
T Consensus        85 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~dl~p~nili~~~~~~~l~dfg~~~~~  156 (267)
T cd08229          85 DAGDLSRMIKHFKKQKRLIPEKTVWKYFVQLCSALEHMHSR---RVMHRDIKPANVFITATGVVKLGDLGLGRFF  156 (267)
T ss_pred             CCCCHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCCEEECcchhhhcc
Confidence            46788888864221 22578889999999999999999988   9999999999999999999999999987654

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=99.17  E-value=3.7e-10  Score=62.08  Aligned_cols=69  Identities=25%  Similarity=0.306  Sum_probs=59.0

Q ss_pred             CcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            4 GSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         4 g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      ++|.+++........+++.....++.|++.++.|+|..   +++|+++++.|++++.+..+++.|||++...
T Consensus        83 ~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~---~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~  151 (285)
T cd07861          83 MDLKKYLDSLPKGQYMDAELVKSYLYQILQGILFCHSR---RVLHRDLKPQNLLIDNKGVIKLADFGLARAF  151 (285)
T ss_pred             CCHHHHHhcCCCCCcCCHHHHHHHHHHHHHHHHHHHhC---CeeecCCCHHHEEEcCCCcEEECcccceeec
Confidence            56777776544323588899999999999999999988   9999999999999999999999999987654

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=99.17  E-value=2.5e-10  Score=62.71  Aligned_cols=70  Identities=24%  Similarity=0.325  Sum_probs=60.9

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      ++++|.+++.+... ..+++.....++.|++.++.|+|..   +++|+++++.|++++.+..++++|||.+...
T Consensus        76 ~~~~L~~~l~~~~~-~~~~~~~~~~~~~ql~~~l~~lH~~---~i~H~di~p~Nil~~~~~~~~l~dfg~~~~~  145 (277)
T cd05577          76 NGGDLKYHIYNVGE-PGFPEARAIFYAAQIICGLEHLHQR---RIVYRDLKPENVLLDDHGNVRISDLGLAVEL  145 (277)
T ss_pred             CCCcHHHHHHHcCc-CCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEECCCCCEEEccCcchhhh
Confidence            57889988876543 2478889999999999999999988   9999999999999999999999999987654

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=99.17  E-value=3.3e-10  Score=61.26  Aligned_cols=69  Identities=29%  Similarity=0.471  Sum_probs=60.0

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      ++++|.+++.+...  .++......++.+++.++.++|..   +++|+++++.|++++.+..+++.|||++...
T Consensus        75 ~~~~l~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~lH~~---~i~h~di~p~nili~~~~~~~l~d~g~~~~~  143 (251)
T cd05041          75 PGGSLLTFLRKKKN--RLTVKKLLQMSLDAAAGMEYLESK---NCIHRDLAARNCLVGENNVLKISDFGMSREE  143 (251)
T ss_pred             CCCcHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHhC---CEehhhcCcceEEEcCCCcEEEeeccccccc
Confidence            47889998876433  477888889999999999999988   9999999999999999999999999987654

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=99.17  E-value=2.4e-10  Score=64.83  Aligned_cols=56  Identities=25%  Similarity=0.460  Sum_probs=50.7

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123           18 ELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus        18 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||+++...
T Consensus       115 ~l~~~~~~~~~~qi~~aL~~LH~~---givHrDikp~Nill~~~~~~kl~Dfg~~~~~~  170 (355)
T cd07874         115 ELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLARTAG  170 (355)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCChHHEEECCCCCEEEeeCcccccCC
Confidence            367788888999999999999988   99999999999999999999999999987643

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=99.17  E-value=4.5e-10  Score=60.79  Aligned_cols=71  Identities=31%  Similarity=0.468  Sum_probs=61.5

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      ++++|.+++.....  .+++.....++.|++.++.++|..   +++|+++++.|++++.+..+++.|||++..+..
T Consensus        81 ~~~~L~~~l~~~~~--~l~~~~~~~~~~~l~~~l~~lh~~---~i~H~dl~~~ni~~~~~~~~~l~dfg~~~~~~~  151 (256)
T cd06612          81 GAGSVSDIMKITNK--TLTEEEIAAILYQTLKGLEYLHSN---KKIHRDIKAGNILLNEEGQAKLADFGVSGQLTD  151 (256)
T ss_pred             CCCcHHHHHHhCcc--CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCcceEEECCCCcEEEcccccchhccc
Confidence            46788888875433  578999999999999999999988   999999999999999999999999998776543

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>PTZ00036 glycogen synthase kinase; Provisional

Probab=99.17  E-value=2.4e-10  Score=66.73  Aligned_cols=70  Identities=24%  Similarity=0.376  Sum_probs=55.8

Q ss_pred             CcHHHHHhcCC-CcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCC-cEEEcccccceecc
Q 040123            4 GSLFCVLRDDD-EAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNL-EASVADFGTARLLH   76 (84)
Q Consensus         4 g~L~~~l~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~i~~~g~~~~~~   76 (84)
                      +++.+++.... ....++......++.|++.|+.|+|..   +++|+|+++.|++++... .+++.|||+++.+.
T Consensus       151 ~~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~gL~yLH~~---~IiHrDLKp~NILl~~~~~~vkL~DFGla~~~~  222 (440)
T PTZ00036        151 QTVHKYMKHYARNNHALPLFLVKLYSYQLCRALAYIHSK---FICHRDLKPQNLLIDPNTHTLKLCDFGSAKNLL  222 (440)
T ss_pred             ccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCcCHHHEEEcCCCCceeeeccccchhcc
Confidence            45555554311 122578888999999999999999988   999999999999998654 69999999987654

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.17  E-value=6.2e-11  Score=72.04  Aligned_cols=75  Identities=31%  Similarity=0.455  Sum_probs=64.8

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccCCCC
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSS   80 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~~~~   80 (84)
                      +.|+|.+.|++...+ .+.-..+..|+.|++.++.|+..+   +++|+|+-++|+++...-.+||.|||+.+.+...+.
T Consensus       193 plGSLldrLrka~~~-~llv~~Lcdya~QiA~aM~YLesk---rlvHRDLAARNlllasprtVKI~DFGLmRaLg~ned  267 (1039)
T KOG0199|consen  193 PLGSLLDRLRKAKKA-ILLVSRLCDYAMQIAKAMQYLESK---RLVHRDLAARNLLLASPRTVKICDFGLMRALGENED  267 (1039)
T ss_pred             ccchHHHHHhhcccc-ceeHHHHHHHHHHHHHHHHHHhhh---hhhhhhhhhhhheecccceeeeecccceeccCCCCc
Confidence            469999999883332 566778899999999999999999   999999999999999988999999999987765554

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=99.17  E-value=4.3e-10  Score=62.79  Aligned_cols=70  Identities=29%  Similarity=0.319  Sum_probs=60.6

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      ++++|.+++....+ ..+++.....++.|++.++.|+|..   +++|+++++.|++++.+..+++.|||++...
T Consensus        84 ~~~~L~~~~~~~~~-~~l~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~  153 (316)
T cd05574          84 PGGELFRLLQRQPG-KCLSEEVARFYAAEVLLALEYLHLL---GIVYRDLKPENILLHESGHIMLSDFDLSKQS  153 (316)
T ss_pred             CCCCHHHHHHhCCC-CccCHHHHHHHHHHHHHHHHHHHHC---CeeccCCChHHeEEcCCCCEEEeecchhhcc
Confidence            47899998875432 2588888889999999999999988   9999999999999999999999999987654

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=99.17  E-value=3.7e-10  Score=61.31  Aligned_cols=70  Identities=30%  Similarity=0.436  Sum_probs=60.3

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      ++++|.+++.....  .+++.....++.|++.++.|+|..   +++|+++++.|++++.+..+++.|||.+....
T Consensus        83 ~~~~l~~~~~~~~~--~l~~~~~~~~~~ql~~~l~~lh~~---~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~  152 (262)
T cd06613          83 GGGSLQDIYQVTRG--PLSELQIAYVCRETLKGLAYLHET---GKIHRDIKGANILLTEDGDVKLADFGVSAQLT  152 (262)
T ss_pred             CCCcHHHHHHhhcc--CCCHHHHHHHHHHHHHHHHHHHhC---CceecCCChhhEEECCCCCEEECccccchhhh
Confidence            46788888876422  588899999999999999999988   99999999999999999999999999876543

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=99.17  E-value=1.2e-10  Score=66.06  Aligned_cols=55  Identities=29%  Similarity=0.588  Sum_probs=49.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123           19 LNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus        19 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      ..+.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++..+.
T Consensus       165 ~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~kL~DfG~~~~~~  219 (353)
T PLN00034        165 ADEQFLADVARQILSGIAYLHRR---HIVHRDIKPSNLLINSAKNVKIADFGVSRILA  219 (353)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHC---CEeecCCCHHHEEEcCCCCEEEcccccceecc
Confidence            45667778899999999999988   99999999999999999999999999987653

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=99.17  E-value=4.2e-10  Score=62.73  Aligned_cols=71  Identities=24%  Similarity=0.301  Sum_probs=60.3

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      +++|+|.+++...... .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.+|+.+..+
T Consensus        81 ~~~~~l~~~l~~~~~~-~~~~~~~~~~~~~l~~~L~~LH~~---~ivH~dlk~~Nili~~~~~~kl~d~~~~~~~  151 (314)
T cd08216          81 MAYGSCEDLLKTHFPE-GLPELAIAFILKDVLNALDYIHSK---GFIHRSVKASHILLSGDGKVVLSGLRYSVSM  151 (314)
T ss_pred             cCCCCHHHHHHHhccc-CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCcceEEEecCCceEEecCccceee
Confidence            3568898888764322 478888889999999999999988   9999999999999998899999999977544

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=99.16  E-value=3.1e-10  Score=61.65  Aligned_cols=69  Identities=33%  Similarity=0.424  Sum_probs=60.2

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      ++++|.+++.+..   .+++.....++.+++.++.++|..   +++|+++++.|++++....+++.|||.+....
T Consensus        82 ~~~~L~~~~~~~~---~~~~~~~~~i~~~i~~~l~~lh~~---~i~H~dl~~~nil~~~~~~~kl~d~g~~~~~~  150 (264)
T cd06626          82 SGGTLEELLEHGR---ILDEHVIRVYTLQLLEGLAYLHSH---GIVHRDIKPANIFLDHNGVIKLGDFGCAVKLK  150 (264)
T ss_pred             CCCcHHHHHhhcC---CCChHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEcccccccccC
Confidence            5788998887643   467888888999999999999988   99999999999999999999999999877653

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=99.16  E-value=4.2e-10  Score=61.93  Aligned_cols=73  Identities=25%  Similarity=0.321  Sum_probs=60.6

Q ss_pred             CCCCcHHHHHhcCC-CcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDD-EAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++|+|.+++.... ....+++.....++.|++.++.|+|..   +++|+++++.|+++.....+++.|||++..+.
T Consensus       102 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~nili~~~~~~kl~dfg~~~~~~  175 (286)
T cd06638         102 CNGGSVTDLVKGFLKRGERMEEPIIAYILHEALMGLQHLHVN---KTIHRDVKGNNILLTTEGGVKLVDFGVSAQLT  175 (286)
T ss_pred             cCCCCHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHhC---CccccCCCHHhEEECCCCCEEEccCCceeecc
Confidence            35788888876422 112577888889999999999999988   99999999999999998899999999887654

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=99.16  E-value=2.7e-10  Score=62.89  Aligned_cols=71  Identities=27%  Similarity=0.353  Sum_probs=59.9

Q ss_pred             CCCcHHHHHhcCC-CcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            2 ERGSLFCVLRDDD-EAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         2 ~~g~L~~~l~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      ++|+|.++++... ....+++.....++.|++.++.++|..   +++|+++++.|++++.+..+++.|||++..+
T Consensus       107 ~~~sL~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~dlkp~nili~~~~~~kl~dfg~~~~~  178 (291)
T cd06639         107 NGGSVTELVKGLLICGQRLDEAMISYILYGALLGLQHLHNN---RIIHRDVKGNNILLTTEGGVKLVDFGVSAQL  178 (291)
T ss_pred             CCCcHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHEEEcCCCCEEEeecccchhc
Confidence            5788888876421 122578889999999999999999988   9999999999999999889999999987654

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=99.16  E-value=3.5e-10  Score=61.85  Aligned_cols=69  Identities=33%  Similarity=0.570  Sum_probs=62.0

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      ++++|.+++.+..   .+++.....++.|++.++.++|..   ++.|+++++.|+++..+..+++.|||++....
T Consensus        85 ~~~~L~~~l~~~~---~l~~~~~~~i~~ql~~~l~~Lh~~---~~~H~dl~~~ni~i~~~~~~~l~df~~~~~~~  153 (280)
T cd05581          85 PNGELLQYIRKYG---SLDEKCTRFYAAEILLALEYLHSK---GIIHRDLKPENILLDKDMHIKITDFGTAKVLD  153 (280)
T ss_pred             CCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCHHHeEECCCCCEEecCCccccccC
Confidence            4789999998754   588999999999999999999988   99999999999999998999999999877554

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=99.16  E-value=3e-10  Score=62.45  Aligned_cols=70  Identities=30%  Similarity=0.457  Sum_probs=60.0

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      .+|+|.+++...... .+++.....++.|++.++.|+|..   +++|+++++.|++++....+++.|||++...
T Consensus       102 ~~~~L~~~~~~~~~~-~~~~~~~~~~~~qi~~al~~LH~~---~ivH~dl~~~nili~~~~~~~l~dfg~~~~~  171 (282)
T cd06636         102 GAGSVTDLVKNTKGN-ALKEDWIAYICREILRGLAHLHAH---KVIHRDIKGQNVLLTENAEVKLVDFGVSAQL  171 (282)
T ss_pred             CCCcHHHHHHHccCC-CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEeeCcchhhh
Confidence            467898888764332 477888888999999999999988   9999999999999999999999999987644

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=99.16  E-value=5.1e-10  Score=61.44  Aligned_cols=69  Identities=33%  Similarity=0.536  Sum_probs=59.9

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++++|.+++...    .+++.....++.+++.++.|+|..   +++|+++++.|+++..+..+++.|||++..+.
T Consensus        84 ~~~~~L~~~~~~~----~~~~~~~~~~~~~i~~~l~~lH~~---~ivH~dl~p~ni~i~~~~~~~l~dfg~~~~~~  152 (277)
T cd06642          84 LGGGSALDLLKPG----PLEETYIATILREILKGLDYLHSE---RKIHRDIKAANVLLSEQGDVKLADFGVAGQLT  152 (277)
T ss_pred             cCCCcHHHHhhcC----CCCHHHHHHHHHHHHHHHHHHhcC---CeeccCCChheEEEeCCCCEEEcccccccccc
Confidence            3578888887642    478888899999999999999988   99999999999999999999999999886654

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=99.16  E-value=3.2e-10  Score=64.52  Aligned_cols=65  Identities=25%  Similarity=0.432  Sum_probs=54.8

Q ss_pred             CcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            4 GSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         4 g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++..++..     .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++....
T Consensus       113 ~~l~~~~~~-----~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~  177 (364)
T cd07875         113 ANLCQVIQM-----ELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLARTAG  177 (364)
T ss_pred             CCHHHHHHh-----cCCHHHHHHHHHHHHHHHHHHhhC---CeecCCCCHHHEEECCCCcEEEEeCCCccccC
Confidence            345555532     367788888999999999999988   99999999999999999999999999987643

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=99.16  E-value=5.2e-10  Score=61.98  Aligned_cols=72  Identities=28%  Similarity=0.433  Sum_probs=59.3

Q ss_pred             CCCCcHHHHHhcCCC---------cccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEccccc
Q 040123            1 MERGSLFCVLRDDDE---------AIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGT   71 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~---------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~   71 (84)
                      +.+++|.+++.....         ...+++.....++.+++.++.|+|..   +++|+++++.|++++.+..++++|||+
T Consensus        99 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~---~i~H~dlkp~Nill~~~~~~kl~dfg~  175 (295)
T cd05097          99 MENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKYLASL---NFVHRDLATRNCLVGNHYTIKIADFGM  175 (295)
T ss_pred             CCCCcHHHHHHhccccccccccccCCcccHHHHHHHHHHHHHHHHHHHhc---CeeccccChhhEEEcCCCcEEeccccc
Confidence            357889888864321         01356778888999999999999988   999999999999999888999999998


Q ss_pred             ceec
Q 040123           72 ARLL   75 (84)
Q Consensus        72 ~~~~   75 (84)
                      +..+
T Consensus       176 ~~~~  179 (295)
T cd05097         176 SRNL  179 (295)
T ss_pred             cccc
Confidence            8654

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=99.16  E-value=3.4e-10  Score=63.19  Aligned_cols=71  Identities=27%  Similarity=0.453  Sum_probs=55.8

Q ss_pred             CCcHHHHHhcCC------CcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeC----CCCcEEEcccccc
Q 040123            3 RGSLFCVLRDDD------EAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLD----LNLEASVADFGTA   72 (84)
Q Consensus         3 ~g~L~~~l~~~~------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~i~~~g~~   72 (84)
                      +++|..++....      ....+++..+..++.|++.|+.|+|..   +++|+|+++.|+++.    ....+++.|||++
T Consensus        83 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~---~ivHrDlkp~Nil~~~~~~~~~~~kl~DfG~a  159 (317)
T cd07868          83 EHDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHAN---WVLHRDLKPANILVMGEGPERGRVKIADMGFA  159 (317)
T ss_pred             CCCHHHHHHhcccccccCCcccCCHHHHHHHHHHHHHHHHHHHhC---CEEcCCCCHHHEEEecCCCCcCcEEEeecCce
Confidence            356666654321      112478888899999999999999988   999999999999993    4567999999998


Q ss_pred             eecc
Q 040123           73 RLLH   76 (84)
Q Consensus        73 ~~~~   76 (84)
                      ..+.
T Consensus       160 ~~~~  163 (317)
T cd07868         160 RLFN  163 (317)
T ss_pred             eccC
Confidence            7653

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.16  E-value=2.7e-10  Score=70.48  Aligned_cols=67  Identities=12%  Similarity=0.233  Sum_probs=54.5

Q ss_pred             CCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCC-------------------CCc
Q 040123            3 RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL-------------------NLE   63 (84)
Q Consensus         3 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------------------~~~   63 (84)
                      +++|.++|.....  .++......++.|++.|+.|+|..   +++|+|++|.|+++..                   ...
T Consensus        63 ~~~L~~~l~~~~~--~~~~~~~~~i~~qi~~al~~lH~~---gIvHrDlKP~NiLl~~~~~~k~~d~~~~~~~~~~~~~~  137 (793)
T PLN00181         63 DVSLRQWLDNPDR--SVDAFECFHVFRQIVEIVNAAHSQ---GIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDEDAT  137 (793)
T ss_pred             CccHHHHHhcccc--cccHHHHHHHHHHHHHHHHHHHhC---CeeeccCCchhEEEcccCcEEEeeccccCcccccccCc
Confidence            5688888875332  588999999999999999999988   9999999999999954                   344


Q ss_pred             EEEccccccee
Q 040123           64 ASVADFGTARL   74 (84)
Q Consensus        64 ~~i~~~g~~~~   74 (84)
                      +++.|||+++.
T Consensus       138 ~ki~DfG~a~~  148 (793)
T PLN00181        138 TKSREIGSSRR  148 (793)
T ss_pred             ccccccccccc
Confidence            56777776654

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.16  E-value=4.8e-11  Score=66.03  Aligned_cols=60  Identities=30%  Similarity=0.467  Sum_probs=53.6

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccCCCC
Q 040123           18 ELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSS   80 (84)
Q Consensus        18 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~~~~   80 (84)
                      .++.....-++.||+.|+.|+|+.   +++|+|+++.|.+...+..+||.|||+++....++.
T Consensus       152 ~Ls~DHvKVFlYQILRGLKYLHsA---~ILHRDIKPGNLLVNSNCvLKICDFGLARvee~d~~  211 (449)
T KOG0664|consen  152 ALTPDHVKVFVYQILRGLKYLHTA---NILHRDIKPGNLLVNSNCILKICDFGLARTWDQRDR  211 (449)
T ss_pred             CCCcchhhhhHHHHHhhhHHHhhc---chhhccCCCccEEeccCceEEecccccccccchhhh
Confidence            566777788899999999999988   999999999999999999999999999998765543

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=99.16  E-value=4.7e-10  Score=63.04  Aligned_cols=68  Identities=22%  Similarity=0.321  Sum_probs=57.7

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTA   72 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~   72 (84)
                      +++|+|.+++..+... .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.+|+..
T Consensus        81 ~~~~~l~~~~~~~~~~-~l~~~~~~~i~~qi~~~L~~LH~~---~iiH~dlkp~Nil~~~~~~~~l~~~~~~  148 (327)
T cd08227          81 MAYGSAKDLICTHFMD-GMSELAIAYILQGVLKALDYIHHM---GYVHRSVKASHILISVDGKVYLSGLRSN  148 (327)
T ss_pred             cCCCcHHHHHHhhccC-CCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCChhhEEEecCCcEEEcccchh
Confidence            4678999998764322 478888999999999999999988   9999999999999998888888888643

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=99.16  E-value=4.3e-10  Score=62.11  Aligned_cols=55  Identities=25%  Similarity=0.484  Sum_probs=50.3

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123           18 ELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus        18 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      .+++.....++.|++.++.++|..   +++|+++++.|++++.+..+++.|||++...
T Consensus       123 ~l~~~~~~~i~~~i~~~l~~LH~~---~ivH~dikp~nill~~~~~~kl~dfg~~~~~  177 (290)
T cd05045         123 ALTMGDLISFAWQISRGMQYLAEM---KLVHRDLAARNVLVAEGRKMKISDFGLSRDV  177 (290)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHC---CeehhhhhhheEEEcCCCcEEeccccccccc
Confidence            467888899999999999999988   9999999999999999999999999998654

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.15  E-value=3.5e-10  Score=69.15  Aligned_cols=73  Identities=32%  Similarity=0.485  Sum_probs=61.5

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCC-CCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL-NLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~i~~~g~~~~~~   76 (84)
                      ++||+|.+.|+..=++..-.+.+...|-.||+.|+.|+|..   .++|+|++..|+++.. .+.+||+|||.++.+-
T Consensus       654 VPGGSLSsLLrskWGPlKDNEstm~fYtkQILeGLkYLHen---~IVHRDIKGDNVLvNTySGvlKISDFGTsKRLA  727 (1226)
T KOG4279|consen  654 VPGGSLSSLLRSKWGPLKDNESTMNFYTKQILEGLKYLHEN---KIVHRDIKGDNVLVNTYSGVLKISDFGTSKRLA  727 (1226)
T ss_pred             CCCCcHHHHHHhccCCCccchhHHHHHHHHHHHHhhhhhhc---ceeeccccCCcEEEeeccceEEecccccchhhc
Confidence            46999999998644422337788999999999999999999   9999999999999964 5789999999887654

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=99.15  E-value=4e-10  Score=62.60  Aligned_cols=68  Identities=29%  Similarity=0.529  Sum_probs=59.8

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      ++++|..++...    .+++.....++.+++.++.++|..   +++|+++++.|++++.+..+++.|||++..+.
T Consensus        99 ~~~~L~~~~~~~----~l~~~~~~~i~~~l~~al~~LH~~---~i~H~dL~p~Nili~~~~~~kl~dfg~~~~~~  166 (296)
T cd06655          99 AGGSLTDVVTET----CMDEAQIAAVCRECLQALEFLHAN---QVIHRDIKSDNVLLGMDGSVKLTDFGFCAQIT  166 (296)
T ss_pred             CCCcHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEccCccchhcc
Confidence            578888888643    478899999999999999999988   99999999999999999999999999876543

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.15  E-value=1.2e-10  Score=61.17  Aligned_cols=67  Identities=28%  Similarity=0.409  Sum_probs=56.4

Q ss_pred             cHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            5 SLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         5 ~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +|..|..+..+  .+.......++.|++.++.|||+.   +++|+|+++.|.++..++..|+.|||+++.+.
T Consensus        86 dlkkyfdslng--~~d~~~~rsfmlqllrgl~fchsh---nvlhrdlkpqnllin~ngelkladfglarafg  152 (292)
T KOG0662|consen   86 DLKKYFDSLNG--DLDPEIVRSFMLQLLRGLGFCHSH---NVLHRDLKPQNLLINRNGELKLADFGLARAFG  152 (292)
T ss_pred             HHHHHHHhcCC--cCCHHHHHHHHHHHHhhhhhhhhh---hhhhccCCcceEEeccCCcEEecccchhhhcC
Confidence            45555555443  477788888899999999999988   99999999999999999999999999987543

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=99.15  E-value=3.6e-10  Score=61.37  Aligned_cols=70  Identities=29%  Similarity=0.410  Sum_probs=61.7

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +.+++|..++.+..   .+++.....++.|++.++.|+|..   +++|+++++.|++++.+..+++.|||.+....
T Consensus        82 ~~~~~L~~~l~~~~---~l~~~~~~~~~~~i~~~l~~lh~~---~i~h~dl~~~nil~~~~~~~~l~d~~~~~~~~  151 (258)
T cd05578          82 LLGGDLRYHLSQKV---KFSEEQVKFWICEIVLALEYLHSK---GIIHRDIKPDNILLDEQGHVHITDFNIATKVT  151 (258)
T ss_pred             CCCCCHHHHHHhcC---CcCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHeEEcCCCCEEEeecccccccC
Confidence            35788998887653   588899999999999999999988   99999999999999999999999999876654

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=99.15  E-value=5.2e-10  Score=60.38  Aligned_cols=70  Identities=34%  Similarity=0.449  Sum_probs=61.6

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      ++++|.+++....   .+++.....++.|++.++.++|..   +++|+++++.|++++.+..+++.|||.+.....
T Consensus        82 ~~~~L~~~~~~~~---~l~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~  151 (254)
T cd06627          82 ENGSLRQIIKKFG---PFPESLVAVYVYQVLQGLAYLHEQ---GVIHRDIKAANILTTKDGVVKLADFGVATKLND  151 (254)
T ss_pred             CCCcHHHHHHhcc---CCCHHHHHHHHHHHHHHHHHHhhC---CcccCCCCHHHEEECCCCCEEEeccccceecCC
Confidence            4678888887653   588999999999999999999988   999999999999999988999999998876644

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=99.15  E-value=3.2e-10  Score=64.45  Aligned_cols=55  Identities=25%  Similarity=0.477  Sum_probs=50.1

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123           18 ELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus        18 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      .++......++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++...
T Consensus       119 ~~~~~~~~~~~~qi~~~L~~LH~~---~ivHrDlkp~NIl~~~~~~~kl~Dfg~a~~~  173 (359)
T cd07876         119 ELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLARTA  173 (359)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEECCCCCEEEecCCCcccc
Confidence            367788888999999999999988   9999999999999999999999999988654

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=99.15  E-value=5.9e-10  Score=61.23  Aligned_cols=69  Identities=32%  Similarity=0.536  Sum_probs=60.4

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++|+|.+++...    .+++.....++.+++.++.++|..   +++|+++++.|++++.+..+++.|||++....
T Consensus        84 ~~~~~L~~~i~~~----~l~~~~~~~~~~~l~~~l~~lh~~---~ivH~dl~p~Nil~~~~~~~~l~dfg~~~~~~  152 (277)
T cd06640          84 LGGGSALDLLRAG----PFDEFQIATMLKEILKGLDYLHSE---KKIHRDIKAANVLLSEQGDVKLADFGVAGQLT  152 (277)
T ss_pred             CCCCcHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHhC---CccCcCCChhhEEEcCCCCEEEcccccceecc
Confidence            3578999988753    478888889999999999999988   99999999999999999999999999886654

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=99.15  E-value=6e-10  Score=61.45  Aligned_cols=71  Identities=34%  Similarity=0.554  Sum_probs=59.2

Q ss_pred             CCCcHHHHHhcCCC-------------------cccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCC
Q 040123            2 ERGSLFCVLRDDDE-------------------AIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNL   62 (84)
Q Consensus         2 ~~g~L~~~l~~~~~-------------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   62 (84)
                      ++|+|.+++.....                   ...+++.....++.|++.++.++|..   +++|+++++.|+++..+.
T Consensus        91 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~aL~~lH~~---~i~H~dl~p~nil~~~~~  167 (288)
T cd05050          91 AYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSCTEQLCIAKQVAAGMAYLSER---KFVHRDLATRNCLVGENM  167 (288)
T ss_pred             CCCCHHHHHHHcCccccccccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhC---CeecccccHhheEecCCC
Confidence            46788888864321                   12367778889999999999999988   999999999999999999


Q ss_pred             cEEEcccccceec
Q 040123           63 EASVADFGTARLL   75 (84)
Q Consensus        63 ~~~i~~~g~~~~~   75 (84)
                      .+++.|||++..+
T Consensus       168 ~~~l~dfg~~~~~  180 (288)
T cd05050         168 VVKIADFGLSRNI  180 (288)
T ss_pred             ceEECccccceec
Confidence            9999999988654

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=99.15  E-value=4.1e-10  Score=61.93  Aligned_cols=55  Identities=29%  Similarity=0.481  Sum_probs=49.7

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123           18 ELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus        18 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      .+++.....++.|++.++.|+|..   +++|+|+++.|+++..+..+++.|||+++.+
T Consensus       120 ~~~~~~~~~~~~ql~~aL~~lH~~---gi~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~  174 (283)
T cd05091         120 TLEPADFVHIVTQIAAGMEFLSSH---HVVHKDLATRNVLVFDKLNVKISDLGLFREV  174 (283)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHc---CccccccchhheEecCCCceEeccccccccc
Confidence            367778888999999999999988   9999999999999998889999999987654

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=99.15  E-value=5.2e-10  Score=64.73  Aligned_cols=54  Identities=30%  Similarity=0.511  Sum_probs=48.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123           19 LNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus        19 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      +++.....++.|++.++.|+|..   +++|+|+++.|++++....+++.|||++..+
T Consensus       236 l~~~~~~~~~~qi~~aL~~LH~~---~ivHrdlkp~NiLl~~~~~~kL~DfGla~~~  289 (401)
T cd05107         236 LSYMDLVGFSYQVANGMEFLASK---NCVHRDLAARNVLICEGKLVKICDFGLARDI  289 (401)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhcC---CcCcccCCcceEEEeCCCEEEEEecCcceec
Confidence            56667788899999999999988   9999999999999998889999999998754

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=99.15  E-value=5.6e-10  Score=61.18  Aligned_cols=69  Identities=33%  Similarity=0.503  Sum_probs=60.7

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      ++++|.+++...    .+++.....++.+++.++.++|..   +++|+++++.|++++....+++.|||++..+..
T Consensus        85 ~~~~L~~~~~~~----~l~~~~~~~i~~~i~~~l~~lh~~---~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~  153 (277)
T cd06917          85 EGGSVRTLMKAG----PIAEKYISVIIREVLVALKYIHKV---GVIHRDIKAANILVTNTGNVKLCDFGVAALLNQ  153 (277)
T ss_pred             CCCcHHHHHHcc----CCCHHHHHHHHHHHHHHHHHHHhC---CcccCCcCHHHEEEcCCCCEEEccCCceeecCC
Confidence            578898888653    478899999999999999999988   999999999999999999999999998876543

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.15  E-value=3.7e-10  Score=63.60  Aligned_cols=72  Identities=26%  Similarity=0.495  Sum_probs=61.6

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCC---CcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLN---LEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~i~~~g~~~~~~~   77 (84)
                      |.||+|.+.|.++.   .+++.....+...++.++.|+|.+   ++.|+|+++.||+-...   ..+||.||-++..+..
T Consensus       158 m~GGplLshI~~~~---~F~E~EAs~vvkdia~aLdFlH~k---gIAHRDlKPENiLC~~pn~vsPvKiCDfDLgSg~k~  231 (463)
T KOG0607|consen  158 MRGGPLLSHIQKRK---HFNEREASRVVKDIASALDFLHTK---GIAHRDLKPENILCESPNKVSPVKICDFDLGSGIKL  231 (463)
T ss_pred             ccCchHHHHHHHhh---hccHHHHHHHHHHHHHHHHHHhhc---CcccccCCccceeecCCCCcCceeeecccccccccc
Confidence            67999999999876   799999999999999999999999   99999999999998543   3579999977665543


Q ss_pred             C
Q 040123           78 D   78 (84)
Q Consensus        78 ~   78 (84)
                      +
T Consensus       232 ~  232 (463)
T KOG0607|consen  232 N  232 (463)
T ss_pred             C
Confidence            3

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=99.15  E-value=3.5e-10  Score=62.84  Aligned_cols=67  Identities=36%  Similarity=0.589  Sum_probs=58.5

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      ++++|..++...    .+++.....++.|++.++.++|..   +++|+++++.|++++.+..+++.|||++..+
T Consensus       101 ~~~~L~~~~~~~----~~~~~~~~~~~~qi~~~L~~LH~~---~ivH~dl~p~Nill~~~~~~kL~dfg~~~~~  167 (297)
T cd06659         101 QGGALTDIVSQT----RLNEEQIATVCESVLQALCYLHSQ---GVIHRDIKSDSILLTLDGRVKLSDFGFCAQI  167 (297)
T ss_pred             CCCCHHHHHhhc----CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHeEEccCCcEEEeechhHhhc
Confidence            567888877542    478889999999999999999988   9999999999999999999999999987543

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=99.14  E-value=5.4e-10  Score=62.05  Aligned_cols=67  Identities=30%  Similarity=0.415  Sum_probs=58.0

Q ss_pred             CcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            4 GSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         4 g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      ++|.+++.....  .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++...
T Consensus        88 ~~l~~~l~~~~~--~~~~~~~~~~~~qi~~aL~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~  154 (301)
T cd07873          88 KDLKQYLDDCGN--SINMHNVKLFLFQLLRGLNYCHRR---KVLHRDLKPQNLLINERGELKLADFGLARAK  154 (301)
T ss_pred             cCHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCHHHEEECCCCcEEECcCcchhcc
Confidence            577777765433  478888899999999999999988   9999999999999999999999999987654

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=99.14  E-value=4.1e-10  Score=61.38  Aligned_cols=72  Identities=18%  Similarity=0.279  Sum_probs=59.9

Q ss_pred             CCCcHHHHHhcCCC-cccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            2 ERGSLFCVLRDDDE-AIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         2 ~~g~L~~~l~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      ++|+|.+++..... ...++......++.|++.++.|+|..   +++|+++++.|++++.+..+++.|||++..+.
T Consensus        85 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~dl~~~nil~~~~~~~~l~d~g~~~~~~  157 (267)
T cd08228          85 DAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEHMHSR---RVMHRDIKPANVFITATGVVKLGDLGLGRFFS  157 (267)
T ss_pred             CCCcHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHhhC---CeeCCCCCHHHEEEcCCCCEEECccccceecc
Confidence            46788887754221 22478888899999999999999988   99999999999999998999999999877643

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.14  E-value=2.5e-10  Score=72.71  Aligned_cols=72  Identities=35%  Similarity=0.461  Sum_probs=62.7

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccCC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVD   78 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~~   78 (84)
                      |++|+|.+.+....   ...+.....+-.|++.|+.|+|..   +++|+|+++.||+++.++.+|..|||.+..+.++
T Consensus      1316 C~~GsLa~ll~~gr---i~dE~vt~vyt~qll~gla~LH~~---gIVHRDIK~aNI~Ld~~g~iK~~DFGsa~ki~~~ 1387 (1509)
T KOG4645|consen 1316 CEGGSLASLLEHGR---IEDEMVTRVYTKQLLEGLAYLHEH---GIVHRDIKPANILLDFNGLIKYGDFGSAVKIKNN 1387 (1509)
T ss_pred             hccCcHHHHHHhcc---hhhhhHHHHHHHHHHHHHHHHHhc---CceecCCCccceeeecCCcEEeecccceeEecCc
Confidence            57899999887543   466667777889999999999988   9999999999999999999999999999887654

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=99.13  E-value=6.6e-10  Score=61.63  Aligned_cols=69  Identities=30%  Similarity=0.534  Sum_probs=59.6

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++++|.+++.+.    .+++.....++.+++.++.++|..   +++|+++++.|+++.....+++.|||++....
T Consensus        98 ~~~~~L~~~~~~~----~l~~~~~~~i~~~l~~al~~LH~~---gi~H~dL~p~Nili~~~~~~kL~dfg~~~~~~  166 (293)
T cd06647          98 LAGGSLTDVVTET----CMDEGQIAAVCRECLQALEFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQIT  166 (293)
T ss_pred             CCCCcHHHHHhhc----CCCHHHHHHHHHHHHHHHHHHHhC---CEeeccCCHHHEEEcCCCCEEEccCcceeccc
Confidence            3578899888753    367888888999999999999988   99999999999999998999999999876543

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=99.13  E-value=4.2e-10  Score=67.06  Aligned_cols=69  Identities=25%  Similarity=0.408  Sum_probs=58.3

Q ss_pred             CcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeC--CCCcEEEcccccceecc
Q 040123            4 GSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLD--LNLEASVADFGTARLLH   76 (84)
Q Consensus         4 g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~i~~~g~~~~~~   76 (84)
                      -+|.++|+.+... .++...+..++.|++.++.++|..   ++||.||+|+||++.  ....+||+|||.+....
T Consensus       272 ~NLYellK~n~f~-Glsl~~ir~~~~Qil~~L~~L~~l---~IIHcDLKPENILL~~~~r~~vKVIDFGSSc~~~  342 (586)
T KOG0667|consen  272 TNLYELLKNNKFR-GLSLPLVRKFAQQILTALLFLHEL---GIIHCDLKPENILLKDPKRSRIKVIDFGSSCFES  342 (586)
T ss_pred             hhHHHHHHhcCCC-CCCHHHHHHHHHHHHHHHHHHHhC---CeeeccCChhheeeccCCcCceeEEecccccccC
Confidence            3688899876643 478889999999999999999988   999999999999995  34689999999876543

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=99.13  E-value=4e-10  Score=63.49  Aligned_cols=67  Identities=28%  Similarity=0.510  Sum_probs=58.5

Q ss_pred             CcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            4 GSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         4 g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      |+|.+++....   .+++.....++.|++.++.|+|..   +++|+++++.|++++.+..+++.|||++..+.
T Consensus        92 ~~l~~~~~~~~---~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~Nil~~~~~~~kl~dfg~~~~~~  158 (334)
T cd07855          92 SDLHHIIHSDQ---PLTEEHIRYFLYQLLRGLKYIHSA---NVIHRDLKPSNLLVNEDCELRIGDFGMARGLS  158 (334)
T ss_pred             hhHHHHhccCC---CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCcEEecccccceeec
Confidence            56777775443   488899999999999999999988   99999999999999999999999999887654

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=99.13  E-value=4.7e-10  Score=59.03  Aligned_cols=56  Identities=23%  Similarity=0.272  Sum_probs=49.5

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHhc-CCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123           18 ELNWTKRVSIVKSVAHALSYLHH-DCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus        18 ~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      .++......++.+++.++.++|. .   +++|+|++|.|++++ +..+++.|||++..+..
T Consensus       113 ~~~~~~~~~i~~~l~~~l~~lH~~~---givHrDlkP~NIll~-~~~~~liDFG~a~~~~~  169 (190)
T cd05145         113 PLEEEEAEELYEQVVEQMRRLYQEA---GLVHGDLSEYNILYH-DGKPYIIDVSQAVELDH  169 (190)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHhC---CEecCCCChhhEEEE-CCCEEEEEcccceecCC
Confidence            35667788899999999999998 7   999999999999998 77899999999987654

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=99.12  E-value=5.4e-10  Score=61.40  Aligned_cols=69  Identities=30%  Similarity=0.537  Sum_probs=60.5

Q ss_pred             CCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            3 RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         3 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++|.+++.....  .+++.....++.|++.++.|+|..   +++|+++++.|++++.+..+++.|||.+....
T Consensus        82 ~~~L~~~~~~~~~--~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~ni~~~~~~~~~l~dfg~~~~~~  150 (286)
T cd07832          82 PSDLSEVLRDEER--PLPEAQVKSYMRMLLKGVAYMHAN---GIMHRDLKPANLLISADGVLKIADFGLARLFS  150 (286)
T ss_pred             CCCHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCcCHHHEEEcCCCcEEEeeeeeccccc
Confidence            6788888865432  588899999999999999999988   99999999999999999999999999877654

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=99.12  E-value=3.1e-10  Score=59.81  Aligned_cols=54  Identities=20%  Similarity=0.193  Sum_probs=48.0

Q ss_pred             cCCHHHHHHHHHHHHHHHHHH-hcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123           18 ELNWTKRVSIVKSVAHALSYL-HHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus        18 ~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      .++......++.|++.++.++ |..   +++|+|+++.|++++. ..+++.|||++...
T Consensus       113 ~~~~~~~~~i~~qi~~~L~~l~H~~---giiHrDlkP~NIli~~-~~v~LiDFG~a~~~  167 (190)
T cd05147         113 PLSESKARELYLQVIQIMRILYQDC---RLVHADLSEYNLLYHD-GKLYIIDVSQSVEH  167 (190)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEEEC-CcEEEEEccccccC
Confidence            577888899999999999998 687   9999999999999984 67999999998754

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=99.12  E-value=7.8e-10  Score=60.35  Aligned_cols=71  Identities=31%  Similarity=0.442  Sum_probs=58.6

Q ss_pred             CCCcHHHHHhcCCC----cccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCC-----cEEEcccccc
Q 040123            2 ERGSLFCVLRDDDE----AIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNL-----EASVADFGTA   72 (84)
Q Consensus         2 ~~g~L~~~l~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~i~~~g~~   72 (84)
                      ++|+|.+++.....    ...+++.....++.|++.++.|+|..   +++|+++++.|++++...     .+++.|||++
T Consensus        82 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~---~i~H~dl~p~nil~~~~~~~~~~~~~l~dfg~~  158 (269)
T cd05044          82 EGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCVYLEQM---HFIHRDLAARNCLVSEKGYDADRVVKIGDFGLA  158 (269)
T ss_pred             CCCcHHHHHHHhhhcccCCccccHHHHHHHHHHHHHHHHHHHhC---CcccCCCChheEEEecCCCCCCcceEECCcccc
Confidence            57899999875321    12367788889999999999999988   999999999999998766     7999999987


Q ss_pred             eec
Q 040123           73 RLL   75 (84)
Q Consensus        73 ~~~   75 (84)
                      ...
T Consensus       159 ~~~  161 (269)
T cd05044         159 RDI  161 (269)
T ss_pred             ccc
Confidence            654

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=99.12  E-value=8.2e-10  Score=59.89  Aligned_cols=71  Identities=28%  Similarity=0.439  Sum_probs=60.7

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      ++++|.+++...... .+++.....++.|++.++.++|..   +++|+++++.|++++.+..+++.|||.+..+.
T Consensus        82 ~~~~l~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~lh~~---~i~h~~l~~~nil~~~~~~~~l~d~~~~~~~~  152 (256)
T cd08218          82 EGGDLYKKINAQRGV-LFPEDQILDWFVQICLALKHVHDR---KILHRDIKSQNIFLTKDGTIKLGDFGIARVLN  152 (256)
T ss_pred             CCCcHHHHHHhccCC-CCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEEcCCCCEEEeeccceeecC
Confidence            578898888754321 468888899999999999999988   99999999999999998999999999887653

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=99.12  E-value=7.7e-10  Score=61.07  Aligned_cols=67  Identities=28%  Similarity=0.379  Sum_probs=58.2

Q ss_pred             CcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            4 GSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         4 g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      ++|.+++.....  .+++.....++.|++.++.|+|..   +++|+++++.|++++.+..++++|||++...
T Consensus        87 ~~L~~~~~~~~~--~~~~~~~~~~~~ql~~al~~lH~~---~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~  153 (291)
T cd07844          87 TDLKQYMDDCGG--GLSMHNVRLFLFQLLRGLAYCHQR---RVLHRDLKPQNLLISERGELKLADFGLARAK  153 (291)
T ss_pred             CCHHHHHHhCCC--CCCHHHHHHHHHHHHHHHHHHHhC---CeecccCCHHHEEEcCCCCEEECcccccccc
Confidence            578888765443  578888999999999999999988   9999999999999999999999999987643

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=99.12  E-value=1e-09  Score=59.95  Aligned_cols=71  Identities=32%  Similarity=0.518  Sum_probs=58.0

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCC-CCcEEEcccccceec
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL-NLEASVADFGTARLL   75 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~i~~~g~~~~~   75 (84)
                      ++++|.+++.........+......++.|++.++.|+|..   +++|+++++.|++++. ...+++.|||.+..+
T Consensus        88 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~i~h~dl~p~nil~~~~~~~~~l~dfg~~~~~  159 (268)
T cd06624          88 PGGSLSALLRSKWGPLKDNEQTIIFYTKQILEGLKYLHDN---QIVHRDIKGDNVLVNTYSGVVKISDFGTSKRL  159 (268)
T ss_pred             CCCCHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHHC---CEeecCCCHHHEEEcCCCCeEEEecchhheec
Confidence            5789999987643211226778888899999999999988   9999999999999976 568999999987654

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=99.12  E-value=5.3e-10  Score=67.12  Aligned_cols=50  Identities=30%  Similarity=0.454  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCC-CCcEEEcccccceec
Q 040123           23 KRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL-NLEASVADFGTARLL   75 (84)
Q Consensus        23 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~i~~~g~~~~~   75 (84)
                      .+..++.|++.++.|+|..   +++|+|+++.|++++. +..+++.|||++..+
T Consensus       256 ~i~~i~~qll~aL~yLH~~---gIiHRDLKP~NILl~~~~~~~KL~DFGlA~~l  306 (566)
T PLN03225        256 IIQTIMRQILFALDGLHST---GIVHRDVKPQNIIFSEGSGSFKIIDLGAAADL  306 (566)
T ss_pred             HHHHHHHHHHHHHHHHHHC---CEEeCcCCHHHEEEeCCCCcEEEEeCCCcccc
Confidence            4556889999999999988   9999999999999985 568999999998754

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=99.11  E-value=6.2e-10  Score=60.38  Aligned_cols=73  Identities=29%  Similarity=0.383  Sum_probs=61.4

Q ss_pred             CCCcHHHHHhcCCC-cccCCHHHHHHHHHHHHHHHHHHh-----cCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            2 ERGSLFCVLRDDDE-AIELNWTKRVSIVKSVAHALSYLH-----HDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         2 ~~g~L~~~l~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      ++++|.+++..... ...+++.....++.+++.++.++|     ..   +++|+++++.|++++.+..+++.|||++...
T Consensus        84 ~~~~L~~~l~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~~~~~---~i~h~dl~p~nili~~~~~~kl~d~g~~~~~  160 (265)
T cd08217          84 EGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLALYECHNRSDPGN---TVLHRDLKPANIFLDANNNVKLGDFGLAKIL  160 (265)
T ss_pred             cCCCHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhcCccccC---cceecCCCHHHEEEecCCCEEEecccccccc
Confidence            46788888875321 225888899999999999999999     66   9999999999999999999999999988765


Q ss_pred             cC
Q 040123           76 HV   77 (84)
Q Consensus        76 ~~   77 (84)
                      ..
T Consensus       161 ~~  162 (265)
T cd08217         161 GH  162 (265)
T ss_pred             cC
Confidence            43

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.11  E-value=8.9e-10  Score=62.31  Aligned_cols=77  Identities=19%  Similarity=0.285  Sum_probs=62.9

Q ss_pred             CCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCC-----CcEEEcccccceeccC
Q 040123            3 RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLN-----LEASVADFGTARLLHV   77 (84)
Q Consensus         3 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~i~~~g~~~~~~~   77 (84)
                      |.+|.+...-.+.  .++-+++..++.|++..++++|.+   .++++|+++.|+++...     ..+.++|||+++.+.+
T Consensus       107 GPSLEDLFD~CgR--~FSvKTV~miA~Qmi~rie~vH~k---~LIYRDIKPdNFLIGrp~~k~~n~IhiiDFGmAK~YrD  181 (449)
T KOG1165|consen  107 GPSLEDLFDLCGR--RFSVKTVAMIAKQMITRIEYVHEK---DLIYRDIKPDNFLIGRPGTKDANVIHIIDFGMAKEYRD  181 (449)
T ss_pred             CcCHHHHHHHhcC--cccHHhHHHHHHHHHHHHHHHHhc---ceeecccCccceeecCCCCCCCceEEEEeccchhhhcC
Confidence            4566666554443  588889999999999999999999   99999999999999532     4578999999999988


Q ss_pred             CCCCCCC
Q 040123           78 DSSNRTL   84 (84)
Q Consensus        78 ~~~~~~~   84 (84)
                      ..+++++
T Consensus       182 p~TkqHI  188 (449)
T KOG1165|consen  182 PKTKQHI  188 (449)
T ss_pred             ccccccC
Confidence            7776653

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=99.11  E-value=1.3e-09  Score=59.90  Aligned_cols=71  Identities=32%  Similarity=0.480  Sum_probs=58.9

Q ss_pred             CCCcHHHHHhcCCC----cccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCC---cEEEccccccee
Q 040123            2 ERGSLFCVLRDDDE----AIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNL---EASVADFGTARL   74 (84)
Q Consensus         2 ~~g~L~~~l~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~i~~~g~~~~   74 (84)
                      ++|+|.+++.....    ...+++.....++.|++.++.|+|..   +++|+++++.|++++...   .+++.|||++..
T Consensus        92 ~g~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~dlkp~nil~~~~~~~~~~kl~dfg~~~~  168 (277)
T cd05036          92 AGGDLKSFLRENRPRPERPSSLTMKDLLFCARDVAKGCKYLEEN---HFIHRDIAARNCLLTCKGPGRVAKIADFGMARD  168 (277)
T ss_pred             CCCCHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CEeecccchheEEEeccCCCcceEeccCccccc
Confidence            57899999876432    12478888899999999999999988   999999999999997543   589999998875


Q ss_pred             c
Q 040123           75 L   75 (84)
Q Consensus        75 ~   75 (84)
                      +
T Consensus       169 ~  169 (277)
T cd05036         169 I  169 (277)
T ss_pred             c
Confidence            5

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.11  E-value=2.5e-10  Score=64.83  Aligned_cols=68  Identities=22%  Similarity=0.381  Sum_probs=61.0

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      .||+|...+.+..   .+++..+..|..+++.++.|+|++   +++++|++..|++++..+.+|+.|+|.++.-
T Consensus       334 ~ggdlmfhmqrqr---klpeeharfys~ei~lal~flh~r---giiyrdlkldnvlldaeghikltdygmcke~  401 (593)
T KOG0695|consen  334 NGGDLMFHMQRQR---KLPEEHARFYSAEICLALNFLHER---GIIYRDLKLDNVLLDAEGHIKLTDYGMCKEG  401 (593)
T ss_pred             cCcceeeehhhhh---cCcHHHhhhhhHHHHHHHHHHhhc---CeeeeeccccceEEccCCceeecccchhhcC
Confidence            5788887776544   699999999999999999999999   9999999999999999999999999987653

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=99.11  E-value=9.4e-10  Score=61.37  Aligned_cols=56  Identities=32%  Similarity=0.516  Sum_probs=49.3

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEe----CCCCcEEEcccccceecc
Q 040123           18 ELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILL----DLNLEASVADFGTARLLH   76 (84)
Q Consensus        18 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~i~~~g~~~~~~   76 (84)
                      .+++.....++.|++.++.|+|..   +++|+|+++.|+++    .....+++.|||+++...
T Consensus       104 ~l~~~~~~~i~~qi~~aL~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~~kl~DfG~a~~~~  163 (317)
T cd07867         104 QLPRSMVKSLLYQILDGIHYLHAN---WVLHRDLKPANILVMGEGPERGRVKIADMGFARLFN  163 (317)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHhC---CEEcCCCCHHHEEEccCCCCCCcEEEeeccceeccC
Confidence            477888889999999999999988   99999999999999    345679999999987653

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=99.11  E-value=5.9e-10  Score=69.68  Aligned_cols=72  Identities=29%  Similarity=0.414  Sum_probs=58.7

Q ss_pred             CCCCcHHHHHhcCCC--------cccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccc
Q 040123            1 MERGSLFCVLRDDDE--------AIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTA   72 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~--------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~   72 (84)
                      ++||+|.+++.....        ....+......++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++
T Consensus        84 ~eGGSL~~lL~s~~~~~~l~e~~~~~lsv~~iL~I~~QIa~AL~yLHs~---GIIHRDLKPeNILLd~dg~vKLiDFGLA  160 (932)
T PRK13184         84 IEGYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFHKICATIEYVHSK---GVLHRDLKPDNILLGLFGEVVILDWGAA  160 (932)
T ss_pred             CCCCCHHHHHHHhhhccccchhhhcccCHHHHHHHHHHHHHHHHHHHHC---CccccCCchheEEEcCCCCEEEEecCcc
Confidence            468899988864211        11234556778889999999999988   9999999999999999999999999998


Q ss_pred             eec
Q 040123           73 RLL   75 (84)
Q Consensus        73 ~~~   75 (84)
                      ...
T Consensus       161 k~i  163 (932)
T PRK13184        161 IFK  163 (932)
T ss_pred             eec
Confidence            765

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=99.10  E-value=1.1e-09  Score=60.44  Aligned_cols=67  Identities=33%  Similarity=0.524  Sum_probs=59.0

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      ++++|.+++.. .   .++......++.|++.++.++|..   +++|+++++.|++++.+..+++.|||.+...
T Consensus        99 ~~~~L~~~~~~-~---~~~~~~~~~~~~ql~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~l~d~g~~~~~  165 (285)
T cd06648          99 EGGALTDIVTH-T---RMNEEQIATVCLAVLKALSFLHAQ---GVIHRDIKSDSILLTSDGRVKLSDFGFCAQV  165 (285)
T ss_pred             CCCCHHHHHHh-C---CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCChhhEEEcCCCcEEEcccccchhh
Confidence            57889888876 2   478888899999999999999988   9999999999999999999999999976543

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=99.10  E-value=9.5e-10  Score=61.03  Aligned_cols=68  Identities=26%  Similarity=0.484  Sum_probs=58.1

Q ss_pred             CcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            4 GSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         4 g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++.+++.....  .+++.....++.|++.++.|+|..   +++|+++++.|++++.+..+++.|||++..+.
T Consensus       103 ~~l~~~l~~~~~--~~~~~~~~~i~~qi~~al~~lH~~---~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~  170 (310)
T cd07865         103 HDLAGLLSNKNV--KFTLSEIKKVMKMLLNGLYYIHRN---KILHRDMKAANILITKDGILKLADFGLARAFS  170 (310)
T ss_pred             cCHHHHHHhccc--CCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHEEECCCCcEEECcCCCccccc
Confidence            466666654332  478899999999999999999988   99999999999999999999999999887553

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=99.10  E-value=1.6e-09  Score=58.51  Aligned_cols=69  Identities=30%  Similarity=0.478  Sum_probs=60.9

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      ++++|.+++....   .+++.....++.|++.++.++|..   +++|+++++.|+++.....+++.|||.+....
T Consensus        76 ~~~~L~~~l~~~~---~l~~~~~~~~~~qi~~~l~~lh~~---~~~H~~l~p~ni~~~~~~~~~l~d~~~~~~~~  144 (250)
T cd05123          76 PGGELFSHLSKEG---RFSEERARFYAAEIVLALEYLHSL---GIIYRDLKPENILLDADGHIKLTDFGLAKELS  144 (250)
T ss_pred             CCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCcceEEEcCCCcEEEeecCcceecc
Confidence            4788998887654   578899999999999999999988   99999999999999998899999999876554

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>PHA03210 serine/threonine kinase US3; Provisional

Probab=99.10  E-value=8.1e-10  Score=65.48  Aligned_cols=54  Identities=31%  Similarity=0.539  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123           21 WTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus        21 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      ......++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++..+..
T Consensus       266 ~~~~~~i~~ql~~aL~yLH~~---gIiHrDLKP~NILl~~~~~vkL~DFGla~~~~~  319 (501)
T PHA03210        266 LKQTRAIMKQLLCAVEYIHDK---KLIHRDIKLENIFLNCDGKIVLGDFGTAMPFEK  319 (501)
T ss_pred             HHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCCEEEEeCCCceecCc
Confidence            445667899999999999988   999999999999999999999999999876643

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=99.10  E-value=1.1e-09  Score=60.16  Aligned_cols=68  Identities=25%  Similarity=0.389  Sum_probs=58.6

Q ss_pred             CCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            3 RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         3 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      .|++.+++.....  .+++.....++.|++.++.++|..   +++|+++++.|++++. ..+++.|||++..+.
T Consensus        83 ~~~l~~~l~~~~~--~~~~~~~~~~~~qi~~~L~~LH~~---~i~H~dl~p~ni~l~~-~~~kl~dfg~~~~~~  150 (282)
T cd07831          83 DMNLYELIKGRKR--PLPEKRVKSYMYQLLKSLDHMHRN---GIFHRDIKPENILIKD-DILKLADFGSCRGIY  150 (282)
T ss_pred             CccHHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHHC---CceecccCHHHEEEcC-CCeEEEecccccccc
Confidence            3577777765432  578999999999999999999988   9999999999999998 899999999887654

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=99.10  E-value=3.6e-10  Score=63.43  Aligned_cols=70  Identities=30%  Similarity=0.450  Sum_probs=57.1

Q ss_pred             cHHHHHhcCCC--cccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCC----CcEEEcccccceeccC
Q 040123            5 SLFCVLRDDDE--AIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLN----LEASVADFGTARLLHV   77 (84)
Q Consensus         5 ~L~~~l~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~i~~~g~~~~~~~   77 (84)
                      ||...|+.+..  ...++...+..++.|++.|+.|+|+.   =++|+|+++.||++..+    +.+||.|+|+++.+..
T Consensus       113 DL~~II~fHr~~~~~~lp~~mvKsilwQil~Gv~YLH~N---WvlHRDLKPaNIlvmgdgperG~VKIaDlGlaR~~~~  188 (438)
T KOG0666|consen  113 DLWHIIKFHRASKAKQLPRSMVKSILWQILDGVHYLHSN---WVLHRDLKPANILVMGDGPERGRVKIADLGLARLFNN  188 (438)
T ss_pred             hHHHHHHHhccchhccCCHHHHHHHHHHHHhhhHHHhhh---heeeccCCcceEEEeccCCccCeeEeecccHHHHhhc
Confidence            45555554331  33678888889999999999999998   89999999999999665    7899999999987654

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=99.09  E-value=1e-09  Score=62.18  Aligned_cols=66  Identities=23%  Similarity=0.432  Sum_probs=56.8

Q ss_pred             CCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            3 RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         3 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      +++|.+++...    .+++.....++.|++.++.|+|..   +++|+++++.|++++.+..+++.|||++...
T Consensus       105 ~~~L~~~~~~~----~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIll~~~~~~kl~dfg~~~~~  170 (345)
T cd07877         105 GADLNNIVKCQ----KLTDDHVQFLIYQILRGLKYIHSA---DIIHRDLKPSNLAVNEDCELKILDFGLARHT  170 (345)
T ss_pred             ccCHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCChHHEEEcCCCCEEEecccccccc
Confidence            45666666532    478888999999999999999988   9999999999999999999999999987654

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=99.09  E-value=9.7e-10  Score=62.04  Aligned_cols=67  Identities=28%  Similarity=0.503  Sum_probs=58.8

Q ss_pred             CcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            4 GSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         4 g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      ++|.+++....   .+++.....++.|++.++.|+|..   +++|+++++.|++++....+++.|||++....
T Consensus        93 ~~L~~~~~~~~---~l~~~~~~~i~~qi~~aL~~LH~~---~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~  159 (337)
T cd07858          93 TDLHQIIRSSQ---TLSDDHCQYFLYQLLRGLKYIHSA---NVLHRDLKPSNLLLNANCDLKICDFGLARTTS  159 (337)
T ss_pred             CCHHHHHhcCC---CCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEEcCCCCEEECcCccccccC
Confidence            56777776543   588999999999999999999988   99999999999999999999999999887654

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=99.09  E-value=1.6e-09  Score=59.91  Aligned_cols=69  Identities=22%  Similarity=0.313  Sum_probs=57.8

Q ss_pred             CcHHHHHhcCCC--cccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCC-CCcEEEcccccceec
Q 040123            4 GSLFCVLRDDDE--AIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL-NLEASVADFGTARLL   75 (84)
Q Consensus         4 g~L~~~l~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~i~~~g~~~~~   75 (84)
                      ++|.+++.....  ...+++.....++.|++.++.|+|..   +++|+++++.|++++. +..+++.|||++..+
T Consensus        90 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~---~i~H~dl~~~nil~~~~~~~~kl~dfg~~~~~  161 (295)
T cd07837          90 SDLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGVAHCHKH---GVMHRDLKPQNLLVDKQKGLLKIADLGLGRAF  161 (295)
T ss_pred             cCHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCChHHEEEecCCCeEEEeecccceec
Confidence            467777764321  12578899999999999999999988   9999999999999988 788999999988754

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=99.09  E-value=9.5e-10  Score=59.98  Aligned_cols=71  Identities=32%  Similarity=0.483  Sum_probs=59.3

Q ss_pred             CCCcHHHHHhcCC-CcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            2 ERGSLFCVLRDDD-EAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         2 ~~g~L~~~l~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      ++++|.+++.... ....+++.....++.|++.++.|+|+.   +++|+++++.|++++.+..+++.|||.+...
T Consensus        92 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH~~---~i~H~~l~p~ni~~~~~~~~~l~d~~~~~~~  163 (275)
T cd06608          92 GGGSVTDLVKGLRKKGKRLKEEWIAYILRETLRGLAYLHEN---KVIHRDIKGQNILLTKNAEVKLVDFGVSAQL  163 (275)
T ss_pred             CCCcHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhcC---CcccCCCCHHHEEEccCCeEEECCCccceec
Confidence            4677887776422 112578889999999999999999988   9999999999999999999999999987654

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=99.08  E-value=8.6e-10  Score=60.02  Aligned_cols=69  Identities=29%  Similarity=0.474  Sum_probs=60.1

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhc-CCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHH-DCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      ++++|.+++.....  .+++.....++.|++.++.++|. .   +++|+++++.|++++.+..+++.|||.+...
T Consensus        82 ~~~~L~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~lH~~~---~i~H~dl~~~ni~~~~~~~~~l~d~g~~~~~  151 (265)
T cd06605          82 DGGSLDKILKEVQG--RIPERILGKIAVAVLKGLTYLHEKH---KIIHRDVKPSNILVNSRGQIKLCDFGVSGQL  151 (265)
T ss_pred             CCCcHHHHHHHccC--CCCHHHHHHHHHHHHHHHHHHcCCC---CeecCCCCHHHEEECCCCCEEEeecccchhh
Confidence            46789998876532  58888889999999999999998 7   9999999999999999999999999987644

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=99.08  E-value=1.3e-09  Score=61.47  Aligned_cols=66  Identities=27%  Similarity=0.553  Sum_probs=56.4

Q ss_pred             CcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            4 GSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         4 g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++.+.+...    .+++.....++.|++.++.++|..   +++|+++++.|++++....+++.|||++....
T Consensus        92 ~~l~~~~~~~----~l~~~~~~~i~~ql~~aL~~LH~~---~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~  157 (336)
T cd07849          92 TDLYKLIKTQ----HLSNDHIQYFLYQILRGLKYIHSA---NVLHRDLKPSNLLLNTNCDLKICDFGLARIAD  157 (336)
T ss_pred             cCHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHEEECCCCCEEECcccceeecc
Confidence            4566555432    478888999999999999999988   99999999999999999999999999886653

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=99.07  E-value=1.8e-09  Score=59.65  Aligned_cols=67  Identities=25%  Similarity=0.352  Sum_probs=55.7

Q ss_pred             CcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            4 GSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         4 g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      +++.+++.....  .+.+.....++.|++.++.|+|..   +++|+++++.|++++.+..+++.|||++...
T Consensus        87 ~~l~~~~~~~~~--~~~~~~~~~~~~qi~~~L~~lH~~---~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~  153 (291)
T cd07870          87 TDLAQYMIQHPG--GLHPYNVRLFMFQLLRGLAYIHGQ---HILHRDLKPQNLLISYLGELKLADFGLARAK  153 (291)
T ss_pred             CCHHHHHHhCCC--CCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCChHHEEEcCCCcEEEecccccccc
Confidence            566666654322  466777888899999999999988   9999999999999999999999999987643

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=99.07  E-value=1.4e-09  Score=59.80  Aligned_cols=69  Identities=25%  Similarity=0.363  Sum_probs=59.1

Q ss_pred             CcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            4 GSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         4 g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      |+|.+++........+++.....++.|++.++.|+|..   +++|+++++.|++++.+..+++.|||++...
T Consensus        82 ~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~h~dl~p~ni~~~~~~~~~l~d~g~~~~~  150 (284)
T cd07836          82 KDLKKYMDTHGVRGALDPNTVKSFTYQLLKGIAFCHEN---RVLHRDLKPQNLLINKRGELKLADFGLARAF  150 (284)
T ss_pred             ccHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHHHEEECCCCcEEEeecchhhhh
Confidence            57778776544323588999999999999999999988   9999999999999999999999999987644

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=99.07  E-value=1.9e-09  Score=60.10  Aligned_cols=68  Identities=26%  Similarity=0.407  Sum_probs=58.5

Q ss_pred             CcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            4 GSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         4 g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      ++|.+++.....  .+++.....++.|++.++.|+|..   +++|+++++.|++++....+++.|||++..+.
T Consensus        92 ~~l~~~l~~~~~--~l~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~nil~~~~~~~kL~dfg~~~~~~  159 (309)
T cd07845          92 QDLASLLDNMPT--PFSESQVKCLMLQLLRGLQYLHEN---FIIHRDLKVSNLLLTDKGCLKIADFGLARTYG  159 (309)
T ss_pred             CCHHHHHHhccc--CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCCEEECccceeeecC
Confidence            466777665332  588899999999999999999998   99999999999999999999999999887654

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=99.07  E-value=1.4e-09  Score=60.19  Aligned_cols=69  Identities=20%  Similarity=0.322  Sum_probs=59.2

Q ss_pred             CcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            4 GSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         4 g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      ++|.+++.....  .+++.....++.|++.++.|+|..   +++|+++++.|++++.+..+++.|||++..+..
T Consensus        90 ~~L~~~~~~~~~--~l~~~~~~~i~~qi~~aL~~LH~~---~i~H~dl~p~nili~~~~~~~l~d~g~~~~~~~  158 (293)
T cd07843          90 HDLKSLMETMKQ--PFLQSEVKCLMLQLLSGVAHLHDN---WILHRDLKTSNLLLNNRGILKICDFGLAREYGS  158 (293)
T ss_pred             cCHHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCCHHHEEECCCCcEEEeecCceeeccC
Confidence            467777765432  588999999999999999999988   999999999999999999999999998776543

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=99.07  E-value=1.7e-09  Score=59.50  Aligned_cols=56  Identities=25%  Similarity=0.413  Sum_probs=50.6

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123           18 ELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus        18 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      .+++.....++.|++.++.|+|..   +++|+++++.|++++.+..+++.|||++..+.
T Consensus        91 ~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nill~~~~~~~l~dfg~~~~~~  146 (279)
T cd06619          91 KIPEHVLGRIAVAVVKGLTYLWSL---KILHRDVKPSNMLVNTRGQVKLCDFGVSTQLV  146 (279)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHC---CEeeCCCCHHHEEECCCCCEEEeeCCcceecc
Confidence            367778888999999999999988   99999999999999999999999999887543

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=99.07  E-value=1.8e-09  Score=58.00  Aligned_cols=72  Identities=32%  Similarity=0.508  Sum_probs=62.1

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccCC
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVD   78 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~~   78 (84)
                      .+++|.+++.....  .+++.....++.+++.++.++|..   +++|+++++.|++++.+..+++.|||.+......
T Consensus        80 ~~~~L~~~~~~~~~--~~~~~~~~~i~~~i~~~l~~lh~~---~i~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~  151 (253)
T cd05122          80 SGGSLKDLLKSTNQ--TLTESQIAYVCKELLKGLEYLHSN---GIIHRDIKAANILLTSDGEVKLIDFGLSAQLSDT  151 (253)
T ss_pred             CCCcHHHHHhhcCC--CCCHHHHHHHHHHHHHHHHHhhcC---CEecCCCCHHHEEEccCCeEEEeecccccccccc
Confidence            46788888876532  588899999999999999999988   9999999999999999999999999988766543

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=99.07  E-value=1.1e-09  Score=60.61  Aligned_cols=61  Identities=28%  Similarity=0.385  Sum_probs=53.2

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccCCCC
Q 040123           18 ELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSS   80 (84)
Q Consensus        18 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~~~~   80 (84)
                      ++++..+-.+...+..++.|+..+  ++++|+|+++.||+++..+.+|+.|||.+.++.+...
T Consensus       187 piPE~ilGk~tva~v~AL~YLKeK--H~viHRDvKPSNILlDe~GniKlCDFGIsGrlvdSkA  247 (391)
T KOG0983|consen  187 PIPERILGKMTVAIVKALYYLKEK--HGVIHRDVKPSNILLDERGNIKLCDFGISGRLVDSKA  247 (391)
T ss_pred             CchHHhhhhhHHHHHHHHHHHHHh--cceeecccCccceEEccCCCEEeecccccceeecccc
Confidence            578888888888899999998754  6999999999999999999999999999988765543

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=99.07  E-value=1.3e-09  Score=63.06  Aligned_cols=69  Identities=29%  Similarity=0.438  Sum_probs=57.3

Q ss_pred             CcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            4 GSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         4 g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++..++...... .+++.....++.|++.++.|+|..   +++|+++++.|++++.+..+++.|||++..+.
T Consensus       220 ~~l~~~~~~~~~~-~l~~~~~~~~~~qi~~aL~~LH~~---~ivH~dikp~Nill~~~~~~kL~DfGla~~~~  288 (400)
T cd05105         220 SEVKNLLSDDGSE-GLTTLDLLSFTYQVARGMEFLASK---NCVHRDLAARNVLLAQGKIVKICDFGLARDIM  288 (400)
T ss_pred             hhHHHHHHhcccC-CCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChHhEEEeCCCEEEEEeCCcceecc
Confidence            3455555543322 588889999999999999999988   99999999999999998899999999987653

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.06  E-value=6.7e-10  Score=66.27  Aligned_cols=70  Identities=27%  Similarity=0.372  Sum_probs=55.7

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEe-CCCCcEEEcccccceeccCC
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILL-DLNLEASVADFGTARLLHVD   78 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~i~~~g~~~~~~~~   78 (84)
                      .+|.+.+.++...    ........|+++++.++.|+|..   +++|+|+++.||++ .....+++.+||.++...+.
T Consensus       399 ~g~ell~ri~~~~----~~~~e~~~w~~~lv~Av~~LH~~---gvvhRDLkp~NIL~~~~~g~lrltyFG~a~~~~~~  469 (612)
T KOG0603|consen  399 DGGELLRRIRSKP----EFCSEASQWAAELVSAVDYLHEQ---GVVHRDLKPGNILLDGSAGHLRLTYFGFWSELERS  469 (612)
T ss_pred             cccHHHHHHHhcc----hhHHHHHHHHHHHHHHHHHHHhc---CeeecCCChhheeecCCCCcEEEEEechhhhCchh
Confidence            3555666555432    22256778999999999999998   99999999999999 47788999999998877654

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=99.06  E-value=1.7e-09  Score=59.12  Aligned_cols=73  Identities=27%  Similarity=0.388  Sum_probs=59.8

Q ss_pred             CCCcHHHHHhcCC-CcccCCHHHHHHHHHHHHHHHHHHhc-CCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            2 ERGSLFCVLRDDD-EAIELNWTKRVSIVKSVAHALSYLHH-DCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         2 ~~g~L~~~l~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      ++++|.+++.... ....+++...+.++.|++.++.++|. .   +++|+++++.|+++.....++++|||.+.....
T Consensus        92 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~---~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~  166 (269)
T cd08528          92 EGAPLGEHFNSLKEKKQRFTEERIWNIFVQMVLALRYLHKEK---RIVHRDLTPNNIMLGEDDKVTITDFGLAKQKQP  166 (269)
T ss_pred             CCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhccCC---ceeecCCCHHHEEECCCCcEEEecccceeeccc
Confidence            5678888775321 12257888999999999999999995 5   799999999999999999999999999876543

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=99.06  E-value=2e-09  Score=58.14  Aligned_cols=72  Identities=28%  Similarity=0.452  Sum_probs=61.4

Q ss_pred             CCCcHHHHHhcCC-CcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            2 ERGSLFCVLRDDD-EAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         2 ~~g~L~~~l~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      ++++|.+++.... ....++......++.+++.++.++|..   +++|+++++.|++++.+..+++.|||.+....
T Consensus        82 ~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~---~~~H~dl~~~nil~~~~~~~~l~d~~~~~~~~  154 (258)
T cd08215          82 DGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLHSR---KILHRDIKPQNIFLTSNGLVKLGDFGISKVLS  154 (258)
T ss_pred             CCCcHHHHHHHhhccCCCcCHHHHHHHHHHHHHHHHHHHhC---CEecccCChHHeEEcCCCcEEECCccceeecc
Confidence            4678988887642 112688899999999999999999988   99999999999999998999999999876543

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=99.06  E-value=2.5e-09  Score=58.76  Aligned_cols=69  Identities=26%  Similarity=0.440  Sum_probs=59.1

Q ss_pred             CcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            4 GSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         4 g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      ++|.+++...... .+++.....++.|++.++.++|..   +++|+++++.|++++.+..+++.|||.+..+.
T Consensus        90 ~~l~~~l~~~~~~-~l~~~~~~~~~~~i~~al~~LH~~---~i~h~~l~~~nili~~~~~~~l~dfg~~~~~~  158 (287)
T cd07838          90 QDLATYLSKCPKP-GLPPETIKDLMRQLLRGVDFLHSH---RIVHRDLKPQNILVTSDGQVKIADFGLARIYS  158 (287)
T ss_pred             cCHHHHHHHccCC-CCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCChhhEEEccCCCEEEeccCcceecc
Confidence            5677777654322 478899999999999999999988   99999999999999999999999999887654

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=99.06  E-value=2e-09  Score=59.19  Aligned_cols=68  Identities=35%  Similarity=0.551  Sum_probs=59.5

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      ++++|..++...    .+++.....++.+++.++.++|..   +++|+++++.|++++.+..+++.|||++..+.
T Consensus        85 ~~~~l~~~i~~~----~~~~~~~~~~~~~l~~~l~~lh~~---~i~h~dl~p~Ni~i~~~~~~~l~dfg~~~~~~  152 (277)
T cd06641          85 GGGSALDLLEPG----PLDETQIATILREILKGLDYLHSE---KKIHRDIKAANVLLSEHGEVKLADFGVAGQLT  152 (277)
T ss_pred             CCCcHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHccC---CeecCCCCHHhEEECCCCCEEEeecccceecc
Confidence            567888888642    478888999999999999999988   99999999999999998999999999876543

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=99.06  E-value=2.5e-09  Score=57.92  Aligned_cols=71  Identities=25%  Similarity=0.439  Sum_probs=59.5

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCC-CcEEEcccccceecc
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLN-LEASVADFGTARLLH   76 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~i~~~g~~~~~~   76 (84)
                      ++++|.+++...... .+++.....++.+++.++.++|..   +++|+++++.|++++.. ..+++.|||.+....
T Consensus        82 ~~~~L~~~~~~~~~~-~~~~~~~~~~~~~i~~~l~~lh~~---~i~h~dl~~~nil~~~~~~~~~l~d~~~~~~~~  153 (256)
T cd08220          82 PGGTLAEYIQKRCNS-LLDEDTILHFFVQILLALHHVHTK---LILHRDLKTQNILLDKHKMVVKIGDFGISKILS  153 (256)
T ss_pred             CCCCHHHHHHHhccc-CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEEccCCCceecC
Confidence            578999998764322 478888999999999999999988   99999999999999754 457999999887654

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=99.06  E-value=1.7e-09  Score=59.24  Aligned_cols=69  Identities=35%  Similarity=0.503  Sum_probs=61.0

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      ++++|.+++...    .+++.....++.|++.++.++|..   +++|+++++.|++++.+...++.|||++..+..
T Consensus        82 ~~~~L~~~~~~~----~~~~~~~~~~~~ql~~~l~~lh~~---~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~  150 (274)
T cd06609          82 GGGSCLDLLKPG----KLDETYIAFILREVLLGLEYLHEE---GKIHRDIKAANILLSEEGDVKLADFGVSGQLTS  150 (274)
T ss_pred             CCCcHHHHHhhc----CCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEECCCCCEEEcccccceeecc
Confidence            467888888754    478899999999999999999988   999999999999999999999999998876643

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.06  E-value=4.8e-10  Score=61.48  Aligned_cols=55  Identities=27%  Similarity=0.561  Sum_probs=50.7

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123           18 ELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus        18 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      .++...+..++.++..|+.|+|..   .++|+|+++.|++++.+..+++.|||+++.+
T Consensus       120 r~sls~Ikk~Mk~Lm~GL~~iHr~---kilHRDmKaaNvLIt~dgilklADFGlar~f  174 (376)
T KOG0669|consen  120 RFSLSEIKKVMKGLMNGLYYIHRN---KILHRDMKAANVLITKDGILKLADFGLARAF  174 (376)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHh---hHHhhcccHhhEEEcCCceEEeeccccccce
Confidence            467788889999999999999988   9999999999999999999999999999654

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=99.06  E-value=1.5e-09  Score=59.73  Aligned_cols=69  Identities=29%  Similarity=0.363  Sum_probs=56.8

Q ss_pred             CCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            3 RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         3 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      ++.+..+.++..   .+++.....++.+++.++.++|..   +++|+++++.|++++.+..+++.|||++.....
T Consensus        84 ~~~l~~~~~~~~---~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~dl~~~ni~~~~~~~~kl~d~g~~~~~~~  152 (288)
T cd07833          84 RTLLELLEASPG---GLPPDAVRSYIWQLLQAIAYCHSH---NIIHRDIKPENILVSESGVLKLCDFGFARALRA  152 (288)
T ss_pred             CCHHHHHHhcCC---CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEECCCCCEEEEeeecccccCC
Confidence            444444444322   478889999999999999999988   999999999999999999999999998776544

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=99.05  E-value=2e-09  Score=59.22  Aligned_cols=69  Identities=23%  Similarity=0.367  Sum_probs=57.6

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++.+..+.....   .+++.....++.|++.++.|+|..   +++|+++++.|++++.+..+++.|||++..+.
T Consensus        83 ~~~~l~~~~~~~~---~~~~~~~~~~~~~i~~~l~~LH~~---~i~h~~l~p~ni~~~~~~~~~l~dfg~~~~~~  151 (286)
T cd07846          83 DHTVLDDLEKYPN---GLDESRVRKYLFQILRGIEFCHSH---NIIHRDIKPENILVSQSGVVKLCDFGFARTLA  151 (286)
T ss_pred             CccHHHHHHhccC---CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEECCCCcEEEEeeeeeeecc
Confidence            3455665554332   478899999999999999999988   99999999999999999999999999877653

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=99.05  E-value=2.2e-09  Score=59.20  Aligned_cols=69  Identities=36%  Similarity=0.544  Sum_probs=60.5

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      ++++|.+++.....  .++......++.+++.++.++|..   +++|+++++.|++++.+..+++.|||++...
T Consensus        98 ~~~~L~~~l~~~~~--~l~~~~~~~i~~~i~~~L~~lH~~---gi~H~dl~p~ni~i~~~~~~~l~d~~~~~~~  166 (286)
T cd06614          98 DGGSLTDIITQNFV--RMNEPQIAYVCREVLQGLEYLHSQ---NVIHRDIKSDNILLSKDGSVKLADFGFAAQL  166 (286)
T ss_pred             CCCcHHHHHHHhcc--CCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCChhhEEEcCCCCEEECccchhhhh
Confidence            46899999987542  488889999999999999999988   9999999999999999899999999976544

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=99.05  E-value=3.1e-09  Score=63.19  Aligned_cols=53  Identities=28%  Similarity=0.479  Sum_probs=47.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123           20 NWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus        20 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      .+.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++..+
T Consensus       307 ~~~~~~~i~~ql~~aL~~lH~~---~ivHrDLKp~NILl~~~~~~kL~DFGla~~~  359 (507)
T PLN03224        307 DINVIKGVMRQVLTGLRKLHRI---GIVHRDIKPENLLVTVDGQVKIIDFGAAVDM  359 (507)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHC---CeecCCCchHhEEECCCCcEEEEeCcCcccc
Confidence            4556778899999999999988   9999999999999999899999999988654

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=99.05  E-value=3.5e-09  Score=58.18  Aligned_cols=71  Identities=25%  Similarity=0.440  Sum_probs=61.0

Q ss_pred             CCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            3 RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         3 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      +|+|.+++....+ ..+++.....++.|++.++.++|..   +++|+++++.|++++.+..+++.|||.+.....
T Consensus        81 ~~~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~Lh~~---~i~H~dl~~~ni~i~~~~~~~l~d~~~~~~~~~  151 (283)
T cd07830          81 EGNLYQLMKDRKG-KPFSESVIRSIIYQILQGLAHIHKH---GFFHRDLKPENLLVSGPEVVKIADFGLAREIRS  151 (283)
T ss_pred             CCCHHHHHHhccc-ccCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChhhEEEcCCCCEEEeecccceeccC
Confidence            5778887776442 2578899999999999999999988   999999999999999999999999998876543

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=99.05  E-value=1.9e-09  Score=58.13  Aligned_cols=71  Identities=34%  Similarity=0.459  Sum_probs=62.3

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccCC
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVD   78 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~~   78 (84)
                      ++++|.+++.+..   .+++.....++.+++.++.|+|..   +++|+++++.|+++..+..+++.|||.+......
T Consensus        84 ~~~~L~~~~~~~~---~~~~~~~~~~~~~l~~~l~~lh~~---~~~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~  154 (260)
T cd06606          84 SGGSLSSLLKKFG---KLPEPVIRKYTRQILEGLAYLHSN---GIVHRDIKGANILVDSDGVVKLADFGCAKRLGDI  154 (260)
T ss_pred             CCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEcCCCCEEEcccccEEecccc
Confidence            4678888887654   588999999999999999999988   9999999999999999999999999988766543

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=99.05  E-value=2e-09  Score=59.69  Aligned_cols=68  Identities=32%  Similarity=0.473  Sum_probs=57.6

Q ss_pred             CcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            4 GSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         4 g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++..++.....  .+++.....++.|++.++.|+|..   +++|+++++.|++++.+..+++.|||.+..+.
T Consensus       100 ~~l~~~l~~~~~--~~~~~~~~~i~~qi~~aL~~LH~~---~i~H~dl~p~nili~~~~~~kl~dfg~~~~~~  167 (302)
T cd07864         100 HDLMGLLESGLV--HFSEDHIKSFMKQLLEGLNYCHKK---NFLHRDIKCSNILLNNKGQIKLADFGLARLYN  167 (302)
T ss_pred             ccHHHHHhcCCC--CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCcEEeCccccccccc
Confidence            456666654322  578899999999999999999988   99999999999999999999999999887653

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=99.04  E-value=2.5e-09  Score=59.41  Aligned_cols=67  Identities=33%  Similarity=0.492  Sum_probs=57.9

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      ++++|.+++...    .+++.....++.|++.++.++|..   +++|+++++.|++++.+..+++.|||++..+
T Consensus       100 ~~~~L~~~~~~~----~~~~~~~~~~~~ql~~~l~~lH~~---givH~dl~p~Nilv~~~~~~~l~dfg~~~~~  166 (292)
T cd06657         100 EGGALTDIVTHT----RMNEEQIAAVCLAVLKALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCAQV  166 (292)
T ss_pred             CCCcHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEECCCCCEEEcccccceec
Confidence            467888776542    377888889999999999999988   9999999999999999889999999987654

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=99.04  E-value=2e-09  Score=60.94  Aligned_cols=67  Identities=24%  Similarity=0.434  Sum_probs=57.3

Q ss_pred             CCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            3 RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         3 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++|..++...    .+++.....++.|++.++.|+|..   +++|+++++.|++++.+..+++.|||++....
T Consensus       103 ~~~l~~~~~~~----~l~~~~~~~i~~qi~~al~~LH~~---gi~H~dlkp~Nill~~~~~~kl~dfg~~~~~~  169 (343)
T cd07880         103 GTDLGKLMKHE----KLSEDRIQFLVYQMLKGLKYIHAA---GIIHRDLKPGNLAVNEDCELKILDFGLARQTD  169 (343)
T ss_pred             CCCHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEeecccccccc
Confidence            45666666532    478889999999999999999988   99999999999999999999999999887543

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=99.04  E-value=1.8e-09  Score=60.64  Aligned_cols=69  Identities=30%  Similarity=0.494  Sum_probs=59.6

Q ss_pred             CcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccCC
Q 040123            4 GSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVD   78 (84)
Q Consensus         4 g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~~   78 (84)
                      ++|.+++....   .+++.....++.+++.++.++|..   +++|+++++.|++++.+..+++.|||++......
T Consensus        88 ~~l~~~l~~~~---~l~~~~~~~i~~~l~~~l~~LH~~---gi~H~dlkp~nili~~~~~~~L~dfg~~~~~~~~  156 (330)
T cd07834          88 TDLHKVIKSPQ---PLTDDHIQYFLYQILRGLKYLHSA---NVIHRDLKPSNILVNSNCDLKICDFGLARGVDPD  156 (330)
T ss_pred             hhHHHHHhCCC---CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEcccCceEeeccc
Confidence            46777776543   588899999999999999999988   9999999999999999999999999988776543

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=99.03  E-value=1.4e-09  Score=64.81  Aligned_cols=74  Identities=27%  Similarity=0.450  Sum_probs=59.5

Q ss_pred             CCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCC---CcEEEcccccceeccCCC
Q 040123            3 RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLN---LEASVADFGTARLLHVDS   79 (84)
Q Consensus         3 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~i~~~g~~~~~~~~~   79 (84)
                      +||....|-+...+ .+++.....++.||+.+++|+|-+   +++|.|++++|+++...   ...|+.|||+++.+....
T Consensus       646 ~GDMLEMILSsEkg-RL~er~TkFlvtQIL~ALr~LH~k---nIvHCDLKPENVLLas~~~FPQvKlCDFGfARiIgEks  721 (888)
T KOG4236|consen  646 HGDMLEMILSSEKG-RLPERITKFLVTQILVALRYLHFK---NIVHCDLKPENVLLASASPFPQVKLCDFGFARIIGEKS  721 (888)
T ss_pred             cchHHHHHHHhhcc-cchHHHHHHHHHHHHHHHHHhhhc---ceeeccCCchheeeccCCCCCceeeccccceeecchhh
Confidence            46666655443332 588888999999999999999988   99999999999999643   467999999999876544


Q ss_pred             C
Q 040123           80 S   80 (84)
Q Consensus        80 ~   80 (84)
                      -
T Consensus       722 F  722 (888)
T KOG4236|consen  722 F  722 (888)
T ss_pred             h
Confidence            3

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=99.03  E-value=4.5e-09  Score=58.61  Aligned_cols=68  Identities=34%  Similarity=0.485  Sum_probs=57.1

Q ss_pred             CcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            4 GSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         4 g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      |++.+++.....  .+++.....++.|++.++.|+|..   +++|+++++.|++++.+..+++.|||++....
T Consensus        99 g~l~~~~~~~~~--~l~~~~~~~~~~ql~~~L~~LH~~---~i~H~dl~p~nIl~~~~~~~kL~dfg~~~~~~  166 (307)
T cd06607          99 GSASDILEVHKK--PLQEVEIAAICHGALQGLAYLHSH---ERIHRDIKAGNILLTEPGTVKLADFGSASLVS  166 (307)
T ss_pred             CCHHHHHHHccc--CCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCcccEEECCCCCEEEeecCcceecC
Confidence            556666554332  578889999999999999999988   99999999999999999999999999876543

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=99.03  E-value=2.8e-09  Score=57.66  Aligned_cols=72  Identities=25%  Similarity=0.336  Sum_probs=60.3

Q ss_pred             CCCcHHHHHhcCCC-cccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            2 ERGSLFCVLRDDDE-AIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         2 ~~g~L~~~l~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      ++++|.+++.+... ...+++.....++.+++.++.++|..   +++|+++++.|++++.+..+++.|||++....
T Consensus        82 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lh~~---~i~h~~l~~~ni~~~~~~~~kl~d~g~~~~~~  154 (256)
T cd08530          82 PFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALHEQ---KILHRDLKSANILLVANDLVKIGDLGISKVLK  154 (256)
T ss_pred             CCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhC---CcccCCCCcceEEEecCCcEEEeeccchhhhc
Confidence            46788888865221 12578888999999999999999988   99999999999999998899999999876554

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=99.03  E-value=3.5e-09  Score=60.15  Aligned_cols=65  Identities=23%  Similarity=0.427  Sum_probs=55.2

Q ss_pred             CcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            4 GSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         4 g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      ++|.+.+..     .++......++.|++.++.++|..   +++|+|+++.|++++.+..+++.|||++....
T Consensus       105 ~~l~~~~~~-----~l~~~~~~~~~~ql~~aL~~LH~~---gi~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~  169 (353)
T cd07850         105 ANLCQVIQM-----DLDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLARTAG  169 (353)
T ss_pred             CCHHHHHhh-----cCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEECCCCCEEEccCccceeCC
Confidence            455555542     267788888999999999999988   99999999999999999999999999987654

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=99.03  E-value=1.1e-09  Score=60.50  Aligned_cols=65  Identities=25%  Similarity=0.439  Sum_probs=52.2

Q ss_pred             CCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeC--CCCcEEEccccccee
Q 040123            3 RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLD--LNLEASVADFGTARL   74 (84)
Q Consensus         3 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~i~~~g~~~~   74 (84)
                      .|||.+-+-..    -+.+.....++.|+++++.|||++   +++|+|++..|+++.  ....+|+.|||....
T Consensus       106 ~gdL~snv~~~----GigE~~~K~v~~ql~SAi~fMHsk---nlVHRdlK~eNiLif~~df~rvKlcDFG~t~k  172 (378)
T KOG1345|consen  106 RGDLRSNVEAA----GIGEANTKKVFAQLLSAIEFMHSK---NLVHRDLKAENILIFDADFYRVKLCDFGLTRK  172 (378)
T ss_pred             cchhhhhcCcc----cccHHHHHHHHHHHHHHHHHhhcc---chhhcccccceEEEecCCccEEEeeecccccc
Confidence            46665544322    367778888999999999999999   999999999999993  345899999998754

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=99.02  E-value=2.4e-09  Score=58.99  Aligned_cols=70  Identities=29%  Similarity=0.410  Sum_probs=59.5

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      +++|+|.+++.+..   .+++.....++.+++.++.|+|..  .+++|+++++.|+++.....+++.|||++..+
T Consensus        85 ~~~~~L~~~~~~~~---~~~~~~~~~~~~~i~~~l~~LH~~--~~i~H~dl~p~nil~~~~~~~~l~d~gl~~~~  154 (284)
T cd06620          85 MDCGSLDRIYKKGG---PIPVEILGKIAVAVVEGLTYLYNV--HRIMHRDIKPSNILVNSRGQIKLCDFGVSGEL  154 (284)
T ss_pred             CCCCCHHHHHHhcc---CCCHHHHHHHHHHHHHHHHHHHHh--cCeeccCCCHHHEEECCCCcEEEccCCcccch
Confidence            35788988887654   578889999999999999999952  17999999999999999899999999987644

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=99.02  E-value=1.4e-09  Score=58.10  Aligned_cols=59  Identities=36%  Similarity=0.546  Sum_probs=53.5

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccCC
Q 040123           18 ELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVD   78 (84)
Q Consensus        18 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~~   78 (84)
                      .+++..+-.++..+..++.|+|++  ..++|+|.++.|++++..+..|+.|||.+..+.++
T Consensus       144 ~ipE~vlGkIa~Svv~al~~L~~k--L~vIHRDvKPsNiLIn~~GqVKiCDFGIsG~L~dS  202 (282)
T KOG0984|consen  144 TIPEDVLGKIAVSVVHALEFLHSK--LSVIHRDVKPSNILINYDGQVKICDFGISGYLVDS  202 (282)
T ss_pred             cCchHHhhHhHHHHHHHHHHHHHH--hhhhhccCCcceEEEccCCcEEEcccccceeehhh
Confidence            688888889999999999999976  68999999999999999999999999998877653

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=99.02  E-value=5e-09  Score=58.71  Aligned_cols=67  Identities=33%  Similarity=0.496  Sum_probs=57.0

Q ss_pred             CcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            4 GSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         4 g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      |++.+.+.....  .+++.....++.+++.++.|+|..   +++|+++++.|++++....+++.|||++...
T Consensus       109 g~l~~~~~~~~~--~l~~~~~~~i~~~i~~~l~~lH~~---~i~H~dL~p~Nil~~~~~~~kl~dfg~~~~~  175 (317)
T cd06635         109 GSASDLLEVHKK--PLQEVEIAAITHGALQGLAYLHSH---NMIHRDIKAGNILLTEPGQVKLADFGSASIA  175 (317)
T ss_pred             CCHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCcccEEECCCCCEEEecCCCcccc
Confidence            567666654332  578889999999999999999988   9999999999999999899999999987644

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=99.01  E-value=3.7e-09  Score=58.14  Aligned_cols=68  Identities=24%  Similarity=0.360  Sum_probs=57.7

Q ss_pred             CcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            4 GSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         4 g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      ++|.+++...... .+++.....++.|++.++.|+|..   +++|+++++.|++++.+..+++.|||++..+
T Consensus        83 ~~l~~~~~~~~~~-~l~~~~~~~~~~~i~~~l~~lh~~---~i~H~~l~p~nill~~~~~~~l~dfg~~~~~  150 (284)
T cd07860          83 QDLKKFMDASPLS-GIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLARAF  150 (284)
T ss_pred             cCHHHHHHhCCCC-CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEECCCCCEEEeeccchhhc
Confidence            4677777643322 578889999999999999999988   9999999999999999999999999987654

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=99.01  E-value=1.1e-09  Score=65.56  Aligned_cols=70  Identities=29%  Similarity=0.402  Sum_probs=62.1

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      ++-||++||..+.   .+.+.....++.|+..++.++|..   +++|||++-+|+.++.++-.+++|||.+.+...
T Consensus       653 ~gIDLFd~IE~kp---~m~E~eAk~IFkQV~agi~hlh~~---~ivhrdikdenvivd~~g~~klidfgsaa~~ks  722 (772)
T KOG1152|consen  653 EGIDLFDFIEFKP---RMDEPEAKLIFKQVVAGIKHLHDQ---GIVHRDIKDENVIVDSNGFVKLIDFGSAAYTKS  722 (772)
T ss_pred             CCcchhhhhhccC---ccchHHHHHHHHHHHhcccccccc---CceecccccccEEEecCCeEEEeeccchhhhcC
Confidence            3568999997654   588899999999999999999999   999999999999999999999999998876543

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=99.01  E-value=1.9e-09  Score=59.52  Aligned_cols=71  Identities=34%  Similarity=0.465  Sum_probs=58.9

Q ss_pred             CCCcHHHHHhcCC-CcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            2 ERGSLFCVLRDDD-EAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         2 ~~g~L~~~l~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      ++++|.+++.... ....++......++.|++.++.|+|..   +++|+++++.|++++....+++.|||++...
T Consensus        84 ~~~~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~lH~~---~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~  155 (287)
T cd06621          84 EGGSLDSIYKKVKKRGGRIGEKVLGKIAESVLKGLSYLHSR---KIIHRDIKPSNILLTRKGQVKLCDFGVSGEL  155 (287)
T ss_pred             CCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEecCCeEEEeeccccccc
Confidence            5778887765422 122477888889999999999999988   9999999999999998889999999987643

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=99.01  E-value=3.2e-09  Score=58.22  Aligned_cols=69  Identities=25%  Similarity=0.432  Sum_probs=59.3

Q ss_pred             CcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            4 GSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         4 g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      +++..++.....  .+++.....++.+++.++.++|..   +++|+++++.|++++.+..+++.|||.+.....
T Consensus        82 ~~l~~~l~~~~~--~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~dl~p~nili~~~~~~~l~df~~~~~~~~  150 (283)
T cd05118          82 TDLYKLIKDRQR--GLPESLIKSYLYQLLQGLAFCHSH---GILHRDLKPENLLINTEGVLKLADFGLARSFGS  150 (283)
T ss_pred             CCHHHHHHhhcc--cCCHHHHHHHHHHHHHHHHHHHHC---CeeecCcCHHHEEECCCCcEEEeeeeeeEecCC
Confidence            577777765432  578889999999999999999988   999999999999999989999999998876544

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=99.01  E-value=2.2e-09  Score=60.36  Aligned_cols=66  Identities=21%  Similarity=0.288  Sum_probs=56.3

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEccccc
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGT   71 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~   71 (84)
                      .+|++.+++++.... .+++.....++.|++.++.|+|..   +++|+|+++.|+++.....+++.+|+.
T Consensus        82 ~~~~l~~~l~~~~~~-~~~~~~~~~~~~qi~~aL~~lH~~---~ivHrDlkp~Nill~~~~~~~~~~~~~  147 (328)
T cd08226          82 AYGSANSLLKTYFPE-GMSEALIGNILFGALRGLNYLHQN---GYIHRNIKASHILISGDGLVSLSGLSH  147 (328)
T ss_pred             cCCCHHHHHHhhccc-CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEeCCCcEEEechHH
Confidence            467888888765422 478888889999999999999988   999999999999999888899888864

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=99.01  E-value=3.1e-09  Score=67.03  Aligned_cols=76  Identities=26%  Similarity=0.359  Sum_probs=58.8

Q ss_pred             CCCCcHHHHHhcCCC-cccCCHHHHHHHHHHHHHHHHHHhcCC----CCCeEecCCCCCcEEeCCC--------------
Q 040123            1 MERGSLFCVLRDDDE-AIELNWTKRVSIVKSVAHALSYLHHDC----TLSVVHRDISSNNILLDLN--------------   61 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~--------------   61 (84)
                      +++|+|.++|..... ...+++..++.++.|++.++.|+|...    ..+++|+|+++.||++...              
T Consensus        96 ~~gGSL~~lL~k~~~~~g~L~E~~Il~Ia~QIL~ALaYLHs~g~~~~~k~IVHRDLKPeNILL~s~~~~lg~i~~~~~n~  175 (1021)
T PTZ00266         96 CDAGDLSRNIQKCYKMFGKIEEHAIVDITRQLLHALAYCHNLKDGPNGERVLHRDLKPQNIFLSTGIRHIGKITAQANNL  175 (1021)
T ss_pred             CCCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCceeccCcHHHeEeecCcccccccccccccc
Confidence            357899998875321 125889999999999999999999741    1259999999999999542              


Q ss_pred             ---CcEEEcccccceecc
Q 040123           62 ---LEASVADFGTARLLH   76 (84)
Q Consensus        62 ---~~~~i~~~g~~~~~~   76 (84)
                         ..+++.|||++..+.
T Consensus       176 ng~~iVKLsDFGlAr~l~  193 (1021)
T PTZ00266        176 NGRPIAKIGDFGLSKNIG  193 (1021)
T ss_pred             CCCCceEEccCCcccccc
Confidence               347999999887653

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=99.00  E-value=4.3e-09  Score=58.46  Aligned_cols=68  Identities=29%  Similarity=0.472  Sum_probs=56.6

Q ss_pred             CcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            4 GSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         4 g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++...+....  ..+++.....++.|++.++.|+|..   +++|+++++.|++++.+..+++.|||++....
T Consensus        99 ~~l~~~~~~~~--~~~~~~~~~~i~~~l~~al~~lH~~---~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~  166 (311)
T cd07866          99 HDLSGLLENPS--VKLTESQIKCYMLQLLEGINYLHEN---HILHRDIKAANILIDNQGILKIADFGLARPYD  166 (311)
T ss_pred             cCHHHHHhccc--cCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCCEEECcCccchhcc
Confidence            34555554322  2588999999999999999999988   99999999999999999999999999887543

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=99.00  E-value=3.6e-09  Score=58.93  Aligned_cols=70  Identities=24%  Similarity=0.407  Sum_probs=56.8

Q ss_pred             CcHHHHHhcCCC--cccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCC----CCcEEEcccccceecc
Q 040123            4 GSLFCVLRDDDE--AIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL----NLEASVADFGTARLLH   76 (84)
Q Consensus         4 g~L~~~l~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~i~~~g~~~~~~   76 (84)
                      +++.+++.....  ...++......++.|++.++.|+|..   +++|+++++.|++++.    ...+++.|||++....
T Consensus        88 ~~l~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~h~dlkp~Nil~~~~~~~~~~~kl~Dfg~~~~~~  163 (316)
T cd07842          88 HDLWQIIKFHRQAKRVSIPPSMVKSLLWQILNGVHYLHSN---WVLHRDLKPANILVMGEGPERGVVKIGDLGLARLFN  163 (316)
T ss_pred             cCHHHHHHhhccCCCcCcCHHHHHHHHHHHHHHHHHHHhC---CEeeCCCCHHHEEEcCCCCccceEEECCCccccccC
Confidence            456665543221  12578888899999999999999988   9999999999999988    8889999999877653

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=99.00  E-value=3.5e-09  Score=58.12  Aligned_cols=69  Identities=29%  Similarity=0.445  Sum_probs=59.3

Q ss_pred             CcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            4 GSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         4 g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      ++|..++.+...  .+++.....++.|++.++.++|..   +++|+++++.|++++.+..+++.|||.+.....
T Consensus        84 ~~l~~~~~~~~~--~~~~~~~~~i~~~i~~al~~LH~~---~~~h~dl~p~nil~~~~~~~~l~d~g~~~~~~~  152 (287)
T cd07840          84 HDLTGLLDSPEV--KFTESQIKCYMKQLLEGLQYLHSN---GILHRDIKGSNILINNDGVLKLADFGLARPYTK  152 (287)
T ss_pred             ccHHHHHhccCC--CCCHHHHHHHHHHHHHHHHHHHHC---CceeccCcHHHeEEcCCCCEEEccccceeeccC
Confidence            467777765422  588899999999999999999988   999999999999999999999999998876644

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=99.00  E-value=3e-09  Score=59.91  Aligned_cols=68  Identities=28%  Similarity=0.342  Sum_probs=59.2

Q ss_pred             CCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            3 RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         3 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      .|+|.+++....   .++......++.|++.++.++|..   +++|+++++.|++++....+++.|||.+....
T Consensus       103 ~~~l~~~l~~~~---~~~~~~~~~~~~ql~~aL~~LH~~---~i~H~dl~~~nill~~~~~~kl~dfg~~~~~~  170 (335)
T PTZ00024        103 ASDLKKVVDRKI---RLTESQVKCILLQILNGLNVLHKW---YFMHRDLSPANIFINSKGICKIADFGLARRYG  170 (335)
T ss_pred             ccCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CeecccccHHHeEECCCCCEEECCccceeecc
Confidence            367888876543   578889999999999999999988   99999999999999999999999999886554

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=98.99  E-value=5.3e-09  Score=57.35  Aligned_cols=68  Identities=29%  Similarity=0.375  Sum_probs=59.4

Q ss_pred             CcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            4 GSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         4 g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      ++|.+++.+...  .+++.....++.+++.++.++|..   +++|+++++.|++++.+..+++.|||.+....
T Consensus        82 ~~l~~~i~~~~~--~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~~l~~~ni~~~~~~~~~l~d~g~~~~~~  149 (282)
T cd07829          82 MDLKKYLDKRPG--PLSPNLIKSIMYQLLRGLAYCHSH---RILHRDLKPQNILINRDGVLKLADFGLARAFG  149 (282)
T ss_pred             cCHHHHHHhhcc--CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChheEEEcCCCCEEEecCCcccccC
Confidence            578888876532  588899999999999999999988   99999999999999999999999999876553

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=98.99  E-value=4.4e-09  Score=57.80  Aligned_cols=70  Identities=31%  Similarity=0.452  Sum_probs=57.6

Q ss_pred             CcHHHHHhcCC-CcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            4 GSLFCVLRDDD-EAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         4 g~L~~~l~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      |+|.+++.... ....+++.....++.|++.++.|+|..  .+++|+++++.|++++.+..+++.|||++..+
T Consensus        84 ~~l~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~--~~i~h~dlkp~nil~~~~~~~kl~dfg~~~~~  154 (283)
T cd06617          84 TSLDKFYKKVYDKGLTIPEDILGKIAVSIVKALEYLHSK--LSVIHRDVKPSNVLINRNGQVKLCDFGISGYL  154 (283)
T ss_pred             ccHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhc--CCeecCCCCHHHEEECCCCCEEEeeccccccc
Confidence            56777765422 123588999999999999999999963  17999999999999999999999999988754

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=98.99  E-value=2.8e-09  Score=63.44  Aligned_cols=71  Identities=23%  Similarity=0.222  Sum_probs=57.9

Q ss_pred             CcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccCCCC
Q 040123            4 GSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSS   80 (84)
Q Consensus         4 g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~~~~   80 (84)
                      -||...|++...  ..+...+..+..|++.++.++|..   +++|.|+++.|+++- ++.+|++|||.+..+..+..
T Consensus       444 ~DL~kiL~k~~~--~~~~~~lk~ywkqML~aV~~IH~~---gIVHSDLKPANFLlV-kG~LKLIDFGIA~aI~~DTT  514 (677)
T KOG0596|consen  444 IDLNKILKKKKS--IDPDWFLKFYWKQMLLAVKTIHQH---GIVHSDLKPANFLLV-KGRLKLIDFGIANAIQPDTT  514 (677)
T ss_pred             ccHHHHHHhccC--CCchHHHHHHHHHHHHHHHHHHHh---ceeecCCCcccEEEE-eeeEEeeeechhcccCcccc
Confidence            378888887654  344347788899999999999988   999999999999974 56889999999988765543

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=98.99  E-value=4.9e-09  Score=57.20  Aligned_cols=71  Identities=27%  Similarity=0.301  Sum_probs=59.7

Q ss_pred             CCcHHHHHhcCC-CcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEccccccee
Q 040123            3 RGSLFCVLRDDD-EAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARL   74 (84)
Q Consensus         3 ~g~L~~~l~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~   74 (84)
                      .|+|.+.+.... ++..+++.+...++.+++.|+.++|.. .+++.|+|+++.|+++.......+.|||.+..
T Consensus       107 ~Gsl~d~i~~~k~kg~~~sE~~iL~if~gic~gL~~lH~~-~~~yAH~DiKP~NILls~~~~~vl~D~GS~~~  178 (302)
T KOG2345|consen  107 RGSLLDEIERLKIKGNFVSEAQILWIFLGICRGLEALHEK-EPPYAHRDIKPANILLSDSGLPVLMDLGSATQ  178 (302)
T ss_pred             cccHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHhcc-CCcccccCCCcceeEecCCCceEEEeccCccc
Confidence            478888877543 233689999999999999999999988 44599999999999999988999999997654

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=98.98  E-value=3.1e-09  Score=58.01  Aligned_cols=75  Identities=20%  Similarity=0.309  Sum_probs=59.5

Q ss_pred             CCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCC---CcEEEcccccceeccCCC
Q 040123            3 RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLN---LEASVADFGTARLLHVDS   79 (84)
Q Consensus         3 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~i~~~g~~~~~~~~~   79 (84)
                      |.+|.+...-...  .++..+...++-|++..++|+|..   +++|+|++|.|++..-+   ..+.++|||+++.+.+..
T Consensus        94 GPsLEdLfnfC~R--~ftmkTvLMLaDQml~RiEyvH~r---~fiHRDIKPdNFLMGlgrh~~kl~LIDFGLaKky~d~~  168 (341)
T KOG1163|consen   94 GPSLEDLFNFCSR--RFTMKTVLMLADQMLSRIEYVHLR---NFIHRDIKPDNFLMGLGRHCNKLYLIDFGLAKKYRDIR  168 (341)
T ss_pred             CccHHHHHHHHhh--hhhHHhHHHHHHHHHHHHHHHHhh---ccccccCCccceeeccccccceEEEEeccchhhhcccc
Confidence            4466665543332  578889999999999999999999   99999999999999654   456799999999887665


Q ss_pred             CCC
Q 040123           80 SNR   82 (84)
Q Consensus        80 ~~~   82 (84)
                      +..
T Consensus       169 t~~  171 (341)
T KOG1163|consen  169 TRQ  171 (341)
T ss_pred             ccc
Confidence            544

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=98.98  E-value=4e-09  Score=59.74  Aligned_cols=67  Identities=25%  Similarity=0.434  Sum_probs=58.2

Q ss_pred             CCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            3 RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         3 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++|.+++...    .+++.....++.|++.++.++|..   +++|+++++.|++++.+..++++|||++....
T Consensus       103 ~~~L~~~~~~~----~l~~~~~~~~~~ql~~aL~~LH~~---gi~H~dlkp~Nill~~~~~~kL~dfg~~~~~~  169 (343)
T cd07851         103 GADLNNIVKCQ----KLSDDHIQFLVYQILRGLKYIHSA---GIIHRDLKPSNIAVNEDCELKILDFGLARHTD  169 (343)
T ss_pred             CCCHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEECCCCCEEEcccccccccc
Confidence            45677777642    488899999999999999999988   99999999999999999999999999887653

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=98.98  E-value=4.7e-09  Score=59.23  Aligned_cols=66  Identities=36%  Similarity=0.582  Sum_probs=56.6

Q ss_pred             CcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            4 GSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         4 g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      ++|..++...    .+++.....++.|++.++.++|..   +++|+++++.|++++.+..+++.|||++..+.
T Consensus        93 ~~L~~~~~~~----~~~~~~~~~i~~qi~~~L~~LH~~---~i~H~dl~p~nill~~~~~~kl~d~g~~~~~~  158 (337)
T cd07852          93 TDLHAVIRAN----ILEDVHKRYIMYQLLKALKYIHSG---NVIHRDLKPSNILLNSDCRVKLADFGLARSLS  158 (337)
T ss_pred             cCHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCcEEEeeccchhccc
Confidence            4666666543    467788888999999999999988   99999999999999999999999999887553

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=98.98  E-value=5.5e-09  Score=56.61  Aligned_cols=71  Identities=30%  Similarity=0.433  Sum_probs=59.0

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCC-cEEEcccccceecc
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNL-EASVADFGTARLLH   76 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~i~~~g~~~~~~   76 (84)
                      ++++|.+++....+. .+++.....++.+++.++.|+|..   +++|+++++.|++++.+. ..++.|||.+....
T Consensus        82 ~~~~L~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~lh~~---~i~H~dl~~~nil~~~~~~~~~l~d~~~~~~~~  153 (257)
T cd08225          82 DGGDLMKRINRQRGV-LFSEDQILSWFVQISLGLKHIHDR---KILHRDIKSQNIFLSKNGMVAKLGDFGIARQLN  153 (257)
T ss_pred             CCCcHHHHHHhccCC-CCCHHHHHHHHHHHHHHHHHHHHC---CcccccCCHHHEEEcCCCCeEEecccccchhcc
Confidence            578888888754332 478889999999999999999988   999999999999998764 46999999876553

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=98.98  E-value=6.8e-09  Score=57.97  Aligned_cols=68  Identities=28%  Similarity=0.467  Sum_probs=57.4

Q ss_pred             CcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            4 GSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         4 g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      |++.+++.....  .+++.....++.+++.++.|+|..   +++|+++++.|++++....+++.|||++....
T Consensus        99 ~~l~~~~~~~~~--~l~~~~~~~~~~~l~~~l~~LH~~---~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~  166 (308)
T cd06634          99 GSASDLLEVHKK--PLQEVEIAAVTHGALQGLAYLHSH---NMIHRDVKAGNILLSEPGLVKLGDFGSASIMA  166 (308)
T ss_pred             CCHHHHHHHcCC--CCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHhEEECCCCcEEECCcccceeec
Confidence            566666654332  478888899999999999999988   99999999999999988999999999876543

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=98.97  E-value=1.7e-09  Score=60.56  Aligned_cols=54  Identities=26%  Similarity=0.451  Sum_probs=49.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123           19 LNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus        19 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      +.+.+...+..|+++|++|+|+.   +++|+|++|.|+++......|+.|||+++.-
T Consensus       115 lDH~tis~i~yq~~~~ik~lhs~---~IihRdLkPsnivv~~~~~lKi~dfg~ar~e  168 (369)
T KOG0665|consen  115 LDHETISYILYQMLCGIKHLHSA---GIIHRDLKPSNIVVNSDCTLKILDFGLARTE  168 (369)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhc---ceeecccCcccceecchhheeeccchhhccc
Confidence            56788889999999999999988   9999999999999999999999999998753

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=98.97  E-value=7.3e-09  Score=57.47  Aligned_cols=67  Identities=28%  Similarity=0.402  Sum_probs=55.0

Q ss_pred             CcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhc-CCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            4 GSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHH-DCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         4 g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      +.+.+++.....  .+++.....++.+++.++.|+|. .   +++|+++++.|++++.+..+++.|||++..+
T Consensus        98 ~~l~~l~~~~~~--~l~~~~~~~i~~~i~~~l~~lH~~~---~i~H~dl~p~nill~~~~~~kL~dfg~~~~~  165 (296)
T cd06618          98 TCLDKLLKRIQG--PIPEDILGKMTVAIVKALHYLKEKH---GVIHRDVKPSNILLDASGNVKLCDFGISGRL  165 (296)
T ss_pred             cCHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhhC---CEecCCCcHHHEEEcCCCCEEECccccchhc
Confidence            345555544322  57888888999999999999996 5   8999999999999999999999999987654

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=98.95  E-value=1e-08  Score=56.44  Aligned_cols=68  Identities=26%  Similarity=0.352  Sum_probs=58.4

Q ss_pred             CcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            4 GSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         4 g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      ++|.+++..... ..+++.....++.|++.++.++|..   +++|+++++.|++++.+..+++.|||.+..+
T Consensus        82 ~~l~~~~~~~~~-~~~~~~~~~~~~~~i~~~L~~lH~~---~~~H~dl~p~nil~~~~~~~~l~df~~~~~~  149 (283)
T cd07835          82 LDLKKYMDSSPL-TGLDPPLIKSYLYQLLQGIAYCHSH---RVLHRDLKPQNLLIDREGALKLADFGLARAF  149 (283)
T ss_pred             cCHHHHHhhCCC-CCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCHHHEEEcCCCcEEEeeccccccc
Confidence            567777765432 2478899999999999999999988   9999999999999999999999999988654

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=98.94  E-value=1.4e-08  Score=56.94  Aligned_cols=66  Identities=33%  Similarity=0.485  Sum_probs=56.4

Q ss_pred             CcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEccccccee
Q 040123            4 GSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARL   74 (84)
Q Consensus         4 g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~   74 (84)
                      |++.+++.....  .+++.....++.|++.++.|+|..   +++|+++++.|+++.....+++.|||++..
T Consensus       105 ~~l~~~l~~~~~--~l~~~~~~~~~~qi~~al~~LH~~---gi~H~dl~p~nili~~~~~~kL~dfg~~~~  170 (313)
T cd06633         105 GSASDLLEVHKK--PLQEVEIAAITHGALQGLAYLHSH---NMIHRDIKAGNILLTEPGQVKLADFGSASK  170 (313)
T ss_pred             CCHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCChhhEEECCCCCEEEeecCCCcc
Confidence            566676654332  578888899999999999999988   999999999999999888999999997654

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>PRK09188 serine/threonine protein kinase; Provisional

Probab=98.94  E-value=3.7e-09  Score=60.65  Aligned_cols=50  Identities=30%  Similarity=0.419  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCeEecCC-CCCcEEeCCCCcEEEcccccceeccC
Q 040123           25 VSIVKSVAHALSYLHHDCTLSVVHRDI-SSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus        25 ~~~~~~i~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      ..++.+++.++.++|..   +++|+|+ ++.|++++.+..+++.|||+++.+..
T Consensus       114 ~~~~~~i~~aL~~lH~~---gIiHrDL~KP~NILv~~~~~ikLiDFGlA~~~~~  164 (365)
T PRK09188        114 PAWFRSAHRALRDLHRA---GITHNDLAKPQNWLMGPDGEAAVIDFQLASVFRR  164 (365)
T ss_pred             HHHHHHHHHHHHHHHHC---CCeeCCCCCcceEEEcCCCCEEEEECccceeccc
Confidence            35678899999999988   9999999 89999998888899999999987653

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=98.94  E-value=2e-08  Score=55.63  Aligned_cols=68  Identities=25%  Similarity=0.367  Sum_probs=54.9

Q ss_pred             CcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCC-CCcEEEcccccceec
Q 040123            4 GSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL-NLEASVADFGTARLL   75 (84)
Q Consensus         4 g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~i~~~g~~~~~   75 (84)
                      +++.+++..... ..+++.....++.|++.++.|+|..   +++|+++++.|++++. +..+++.|||++...
T Consensus        85 ~~l~~~~~~~~~-~~~~~~~~~~~~~qi~~aL~~LH~~---~i~H~dl~p~nill~~~~~~~kl~dfg~~~~~  153 (294)
T PLN00009         85 LDLKKHMDSSPD-FAKNPRLIKTYLYQILRGIAYCHSH---RVLHRDLKPQNLLIDRRTNALKLADFGLARAF  153 (294)
T ss_pred             ccHHHHHHhCCC-CCcCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCcceEEEECCCCEEEEccccccccc
Confidence            567777655432 2356778888999999999999988   9999999999999974 557899999988654

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=98.94  E-value=1.2e-08  Score=55.52  Aligned_cols=71  Identities=27%  Similarity=0.435  Sum_probs=57.9

Q ss_pred             CCCcHHHHHhcCC-CcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            2 ERGSLFCVLRDDD-EAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         2 ~~g~L~~~l~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      ++++|..++.... ....+++.....++.|++.++.++|..   +++|+++++.|+++.. ..+++.|||++..+.
T Consensus        85 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~---~i~h~~l~~~nili~~-~~~~l~d~g~~~~~~  156 (260)
T cd08222          85 EGRDLDCKLEELKHTGKTLSENQVCEWFIQLLLGVHYMHQR---RILHRDLKAKNIFLKN-NLLKIGDFGVSRLLM  156 (260)
T ss_pred             CCCCHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHHc---CccccCCChhheEeec-CCEeecccCceeecC
Confidence            5678888776421 122588899999999999999999988   9999999999999975 458999999876653

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=98.92  E-value=1e-08  Score=63.50  Aligned_cols=74  Identities=28%  Similarity=0.439  Sum_probs=65.4

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccCC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVD   78 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~~   78 (84)
                      |.+|+..+.+++..+ ..+.+.....++.+++.++.++|..   .++|+|++-.|+++...+.+|+.|||++..++..
T Consensus       103 C~gGSVTDLVKn~~g-~rl~E~~IaYI~re~lrgl~HLH~n---kviHRDikG~NiLLT~e~~VKLvDFGvSaQldsT  176 (953)
T KOG0587|consen  103 CGGGSVTDLVKNTKG-NRLKEEWIAYILREILRGLAHLHNN---KVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDST  176 (953)
T ss_pred             cCCccHHHHHhhhcc-cchhhHHHHHHHHHHHHHHHHHhhc---ceeeecccCceEEEeccCcEEEeeeeeeeeeecc
Confidence            458999998887663 3688899999999999999999988   9999999999999999999999999998876643

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=98.91  E-value=1.6e-08  Score=57.03  Aligned_cols=66  Identities=30%  Similarity=0.478  Sum_probs=55.8

Q ss_pred             CCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            3 RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         3 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      +++|..+++..    .++......++.|++.++.++|..   +++|+++++.|++++.+..+++.|||.+...
T Consensus        93 ~~~L~~~~~~~----~~~~~~~~~~~~ql~~aL~~LH~~---~iiH~dl~p~Nili~~~~~~~l~dfg~~~~~  158 (328)
T cd07856          93 GTDLHRLLTSR----PLEKQFIQYFLYQILRGLKYVHSA---GVVHRDLKPSNILINENCDLKICDFGLARIQ  158 (328)
T ss_pred             ccCHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEeECCCCCEEeCcccccccc
Confidence            45677666532    367777888899999999999988   9999999999999999999999999987654

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>smart00090 RIO RIO-like kinase

Probab=98.91  E-value=5.8e-09  Score=56.76  Aligned_cols=55  Identities=18%  Similarity=0.269  Sum_probs=47.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHhcCCCCC-eEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123           19 LNWTKRVSIVKSVAHALSYLHHDCTLS-VVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus        19 ~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      ........++.|++.++.++|..   + ++|+|+++.|++++ +..+++.|||.+.....
T Consensus       145 ~~~~~~~~i~~qi~~~l~~LH~~---g~iiH~Dikp~NIli~-~~~i~LiDFg~a~~~~~  200 (237)
T smart00090      145 PEEEEEFELYDDILEEMRKLYKE---GELVHGDLSEYNILVH-DGKVVIIDVSQSVELDH  200 (237)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhc---CCEEeCCCChhhEEEE-CCCEEEEEChhhhccCC
Confidence            44455678889999999999988   8 99999999999998 77899999998876543

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.90  E-value=1.5e-09  Score=62.70  Aligned_cols=75  Identities=32%  Similarity=0.479  Sum_probs=62.3

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccCCCC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSS   80 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~~~~   80 (84)
                      |.||++.+.++...   .+.+.....++.+++.++.|+|..   +.+|+|+++.|+++...+..++.|||++..++....
T Consensus        93 ~~gGsv~~lL~~~~---~~~E~~i~~ilre~l~~l~ylH~~---~kiHrDIKaanil~s~~g~vkl~DfgVa~ql~~~~~  166 (467)
T KOG0201|consen   93 CGGGSVLDLLKSGN---ILDEFEIAVILREVLKGLDYLHSE---KKIHRDIKAANILLSESGDVKLADFGVAGQLTNTVK  166 (467)
T ss_pred             hcCcchhhhhccCC---CCccceeeeehHHHHHHhhhhhhc---ceecccccccceeEeccCcEEEEecceeeeeechhh
Confidence            45788888776543   346666777789999999999998   999999999999999889999999999988776554


Q ss_pred             C
Q 040123           81 N   81 (84)
Q Consensus        81 ~   81 (84)
                      .
T Consensus       167 r  167 (467)
T KOG0201|consen  167 R  167 (467)
T ss_pred             c
Confidence            3

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=98.88  E-value=4.2e-09  Score=57.20  Aligned_cols=59  Identities=24%  Similarity=0.388  Sum_probs=51.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCC-CCcEEEcccccceeccCCCC
Q 040123           19 LNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL-NLEASVADFGTARLLHVDSS   80 (84)
Q Consensus        19 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~i~~~g~~~~~~~~~~   80 (84)
                      +.......++.+++.++.|||+.   ++.|+|.+|.|+.++. .-.++++|||+|.++++...
T Consensus       129 l~d~dIryY~~elLkALdyCHS~---GImHRDVKPhNvmIdh~~rkLrlIDWGLAEFYHp~~e  188 (338)
T KOG0668|consen  129 LTDYDIRYYIYELLKALDYCHSM---GIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKE  188 (338)
T ss_pred             hchhhHHHHHHHHHHHHhHHHhc---CcccccCCcceeeechhhceeeeeecchHhhcCCCce
Confidence            44556778899999999999988   9999999999999974 56799999999999887654

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=98.86  E-value=2.6e-09  Score=60.05  Aligned_cols=70  Identities=33%  Similarity=0.483  Sum_probs=62.3

Q ss_pred             CCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            3 RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         3 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      .|++.+.++-+..  .+.+.....++...+.+++|+|.-   .-+|+|+++.|+++...+..|+.|||++..+++
T Consensus       112 AGSiSDI~R~R~K--~L~E~EIs~iL~~TLKGL~YLH~~---~KIHRDIKAGNILLNT~G~AKLADFGVAGQLTD  181 (502)
T KOG0574|consen  112 AGSISDIMRARRK--PLSEQEISAVLRDTLKGLQYLHDL---KKIHRDIKAGNILLNTDGIAKLADFGVAGQLTD  181 (502)
T ss_pred             CCcHHHHHHHhcC--CccHHHHHHHHHHHHhHHHHHHHH---HHHHhhcccccEEEcccchhhhhhccccchhhh
Confidence            5888888886554  688999999999999999999977   889999999999999999999999999987764

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=98.85  E-value=3.2e-08  Score=52.85  Aligned_cols=70  Identities=36%  Similarity=0.592  Sum_probs=60.5

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      .+++|..++....   .++......++.+++.++.++|..   +++|+++++.|++++.+..+++.|||.+.....
T Consensus        70 ~~~~L~~~~~~~~---~~~~~~~~~~~~~l~~~l~~lh~~---~i~h~~i~~~ni~~~~~~~~~l~d~~~~~~~~~  139 (244)
T smart00220       70 DGGDLFDLLKKRG---RLSEDEARFYARQILSALEYLHSN---GIIHRDLKPENILLDEDGHVKLADFGLARQLDP  139 (244)
T ss_pred             CCCCHHHHHHhcc---CCCHHHHHHHHHHHHHHHHHHHHc---CeecCCcCHHHeEECCCCcEEEccccceeeecc
Confidence            3568888887543   378888999999999999999988   999999999999999999999999998876654

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=98.84  E-value=2.5e-08  Score=56.36  Aligned_cols=67  Identities=25%  Similarity=0.314  Sum_probs=56.9

Q ss_pred             CCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCC-----CcEEEcccccce
Q 040123            3 RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLN-----LEASVADFGTAR   73 (84)
Q Consensus         3 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~i~~~g~~~   73 (84)
                      |.+|.+..+... ...++..+...++.|++.++.++|+.   +++|+|+++.|+.+...     ..+.+.|||+++
T Consensus       104 G~sL~dl~~~~~-~~~fs~~T~l~ia~q~l~~l~~lH~~---G~iHRDiKp~N~~~g~~~~~~~~~~~llDfGlar  175 (322)
T KOG1164|consen  104 GPSLEDLRKRNP-PGRFSRKTVLRIAIQNLNALEDLHSK---GFIHRDIKPENFVVGQSSRSEVRTLYLLDFGLAR  175 (322)
T ss_pred             CccHHHHHHhCC-CCCcCHhHHHHHHHHHHHHHHHHHhc---CcccCCcCHHHeeecCCCCcccceEEEEecCCCc
Confidence            567777665444 33688999999999999999999998   99999999999999754     358999999998

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=98.83  E-value=2.9e-08  Score=56.25  Aligned_cols=65  Identities=28%  Similarity=0.510  Sum_probs=54.2

Q ss_pred             CcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCC-CCcEEEcccccceec
Q 040123            4 GSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL-NLEASVADFGTARLL   75 (84)
Q Consensus         4 g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~i~~~g~~~~~   75 (84)
                      ++|.+++...    .+++.....++.|++.++.|+|..   +++|+++++.|++++. +..+++.|||.+..+
T Consensus       100 ~~L~~~~~~~----~l~~~~~~~~~~qi~~aL~~LH~~---givH~dikp~Nili~~~~~~~kl~dfg~~~~~  165 (342)
T cd07854         100 TDLANVLEQG----PLSEEHARLFMYQLLRGLKYIHSA---NVLHRDLKPANVFINTEDLVLKIGDFGLARIV  165 (342)
T ss_pred             ccHHHHHHcC----CCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEEcCCCceEEECCcccceec
Confidence            4666666432    478889999999999999999988   9999999999999974 557899999988654

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=98.83  E-value=6.5e-08  Score=50.46  Aligned_cols=71  Identities=37%  Similarity=0.630  Sum_probs=60.4

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCC-CCcEEEcccccceeccC
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL-NLEASVADFGTARLLHV   77 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~i~~~g~~~~~~~   77 (84)
                      .+++|.+++.....  .++......++.+++.++.++|..   +++|+++.+.|+++.. ....++.||+.+.....
T Consensus        74 ~~~~l~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~lh~~---~~~H~dl~~~ni~~~~~~~~~~l~d~~~~~~~~~  145 (215)
T cd00180          74 EGGSLKDLLKENEG--KLSEDEILRILLQILEGLEYLHSN---GIIHRDLKPENILLDSDNGKVKLADFGLSKLLTS  145 (215)
T ss_pred             CCCcHHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHhhEEEeCCCCcEEEecCCceEEccC
Confidence            35788888876521  478888999999999999999988   9999999999999998 78999999998876543

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.83  E-value=8.1e-09  Score=62.38  Aligned_cols=59  Identities=32%  Similarity=0.492  Sum_probs=52.6

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccCCC
Q 040123           18 ELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDS   79 (84)
Q Consensus        18 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~~~   79 (84)
                      ++-+..+..++.+.+.|+.|+|+.   +.+|+|+++.||++...+.+|+.|||.+..+.+..
T Consensus       122 plqEvEIAAi~~gaL~gLaYLHS~---~~IHRDiKAGNILLse~g~VKLaDFGSAsi~~PAn  180 (948)
T KOG0577|consen  122 PLQEVEIAAITHGALQGLAYLHSH---NRIHRDIKAGNILLSEPGLVKLADFGSASIMAPAN  180 (948)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHh---hHHhhhccccceEecCCCeeeeccccchhhcCchh
Confidence            577778888899999999999988   99999999999999999999999999887765543

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=98.82  E-value=5.6e-08  Score=50.22  Aligned_cols=60  Identities=25%  Similarity=0.198  Sum_probs=50.9

Q ss_pred             CcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            4 GSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         4 g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      |+|.+++..+..  .+++..+..++.|++.|+.|+|..   +      ++.|++++.+..+++  ||.+....
T Consensus         1 GsL~~~l~~~~~--~l~~~~~~~i~~qi~~~L~~lH~~---~------kp~Nil~~~~~~~~~--fG~~~~~~   60 (176)
T smart00750        1 VSLADILEVRGR--PLNEEEIWAVCLQCLRALRELHRQ---A------KSGNILLTWDGLLKL--DGSVAFKT   60 (176)
T ss_pred             CcHHHHHHHhCC--CCCHHHHHHHHHHHHHHHHHHHhc---C------CcccEeEcCccceee--ccceEeec
Confidence            789999986543  589999999999999999999987   4      899999988888887  88876653

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=98.81  E-value=3.3e-08  Score=56.04  Aligned_cols=55  Identities=29%  Similarity=0.488  Sum_probs=50.3

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123           18 ELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus        18 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      .+++.....++.|++.++.|+|..   +++|+++++.|++++.+..++++|||++...
T Consensus       113 ~~~~~~~~~~~~qi~~aL~~LH~~---~i~H~dlkp~NIll~~~~~~kL~dfg~~~~~  167 (342)
T cd07879         113 PLSEDKVQYLVYQMLCGLKYIHSA---GIIHRDLKPGNLAVNEDCELKILDFGLARHA  167 (342)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEeeCCCCcCC
Confidence            477888888999999999999988   9999999999999999999999999987654

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>PRK12274 serine/threonine protein kinase; Provisional

Probab=98.79  E-value=2.7e-08  Score=53.36  Aligned_cols=49  Identities=24%  Similarity=0.283  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHHhcCCCCCeEecCC-CCCcEEeCCCCcEEEcccccceeccC
Q 040123           26 SIVKSVAHALSYLHHDCTLSVVHRDI-SSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus        26 ~~~~~i~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      .+..|+..++.++|..   +++|+|+ ++.|++++.+..++++|||++....+
T Consensus        95 ~~~~qi~~~L~~lH~~---GIvHrDL~kp~NILv~~~g~i~LIDFG~A~~~~~  144 (218)
T PRK12274         95 AYFRAARRLLQQLHRC---GVAHNDLAKEANWLVQEDGSPAVIDFQLAVRGNP  144 (218)
T ss_pred             HHHHHHHHHHHHHHHC---cCccCCCCCcceEEEcCCCCEEEEECCCceecCC
Confidence            4667888999999998   9999999 68999998888899999999985543

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=98.77  E-value=9.3e-08  Score=50.72  Aligned_cols=72  Identities=39%  Similarity=0.610  Sum_probs=61.0

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccCC
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVD   78 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~~   78 (84)
                      .+++|.+++.....  .+++.....++.+++.++.++|..   ++.|+++++.|++++....+++.|||.+......
T Consensus        80 ~~~~L~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~lh~~---~i~h~di~~~ni~v~~~~~~~l~d~g~~~~~~~~  151 (225)
T smart00221       80 EGGDLFDYLRKKGG--KLSEEEARFYLRQILEALEYLHSL---GIVHRDLKPENILLGMDGLVKLADFGLARFIHRD  151 (225)
T ss_pred             CCCCHHHHHHhccc--CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEeeCceeeEecCc
Confidence            35688888876542  177888889999999999999988   9999999999999998899999999988776543

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=98.77  E-value=2.5e-08  Score=61.61  Aligned_cols=74  Identities=30%  Similarity=0.459  Sum_probs=54.3

Q ss_pred             CcHHHHHhcCCCccc-CCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCC-----CCcEEEcccccceeccC
Q 040123            4 GSLFCVLRDDDEAIE-LNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL-----NLEASVADFGTARLLHV   77 (84)
Q Consensus         4 g~L~~~l~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~i~~~g~~~~~~~   77 (84)
                      .+|.+++........ ...........|++.|+.++|..   +++|+|++|.||++..     ....+|+|||+++.+..
T Consensus       587 ~sL~dlie~~~~d~~~~~~i~~~~~l~q~~~GlaHLHsl---~iVHRDLkPQNILI~~~~~~~~~ra~iSDfglsKkl~~  663 (903)
T KOG1027|consen  587 CSLQDLIESSGLDVEMQSDIDPISVLSQIASGLAHLHSL---KIVHRDLKPQNILISVPSADGTLRAKISDFGLSKKLAG  663 (903)
T ss_pred             hhHHHHHhccccchhhcccccHHHHHHHHHHHHHHHHhc---ccccccCCCceEEEEccCCCcceeEEecccccccccCC
Confidence            357777765311001 11134466678999999999988   9999999999999965     24679999999998876


Q ss_pred             CCC
Q 040123           78 DSS   80 (84)
Q Consensus        78 ~~~   80 (84)
                      +.+
T Consensus       664 ~~s  666 (903)
T KOG1027|consen  664 GKS  666 (903)
T ss_pred             Ccc
Confidence            654

>PRK10345 hypothetical protein; Provisional

Probab=98.75  E-value=5.5e-08  Score=52.15  Aligned_cols=63  Identities=19%  Similarity=0.278  Sum_probs=46.8

Q ss_pred             CCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHH-HHHhcCCCCCeEecCCCCCcEEeCC----CCcEEEcc-ccccee
Q 040123            3 RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHAL-SYLHHDCTLSVVHRDISSNNILLDL----NLEASVAD-FGTARL   74 (84)
Q Consensus         3 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~i~~-~g~~~~   74 (84)
                      +|+|.+++++.    .+++.  ..++.+++.++ .|+|..   +++|+|+++.|++++.    +..+++.| ||....
T Consensus        91 ~~tL~~~l~~~----~~~e~--~~~~~~~L~~l~~yLh~~---~IvhrDlKp~NILl~~~~~~~~~~~LiDg~G~~~~  159 (210)
T PRK10345         91 SITLTEFAEQC----RYEED--VAQLRQLLKKLKRYLLDN---RIVTMELKPQNILCQRISESEVIPVVCDNIGESTF  159 (210)
T ss_pred             chhHHHHHHcc----cccHh--HHHHHHHHHHHHHHHHHC---CEeecCCCHHHEEEeccCCCCCcEEEEECCCCcce
Confidence            57999999753    24444  24567777776 899988   9999999999999964    23789999 454433

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=98.74  E-value=1e-07  Score=54.66  Aligned_cols=72  Identities=22%  Similarity=0.324  Sum_probs=57.6

Q ss_pred             CCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCC--------------------CC
Q 040123            3 RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL--------------------NL   62 (84)
Q Consensus         3 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------------------~~   62 (84)
                      |-++.+|++.+.-. +++..++..+..|++.++.++|..   .++|.|++|+||++..                    ..
T Consensus       174 G~S~~dFlk~N~y~-~fpi~~ir~m~~QL~~sv~fLh~~---kl~HTDLKPENILfvss~~~~~~~~k~~~~~~r~~ks~  249 (415)
T KOG0671|consen  174 GLSTFDFLKENNYI-PFPIDHIRHMGYQLLESVAFLHDL---KLTHTDLKPENILFVSSEYFKTYNPKKKVCFIRPLKST  249 (415)
T ss_pred             ChhHHHHhccCCcc-ccchHHHHHHHHHHHHHHHHHHhc---ceeecCCChheEEEeccceEEEeccCCccceeccCCCc
Confidence            34788999875532 578899999999999999999988   9999999999998832                    12


Q ss_pred             cEEEcccccceeccCC
Q 040123           63 EASVADFGTARLLHVD   78 (84)
Q Consensus        63 ~~~i~~~g~~~~~~~~   78 (84)
                      .++++|||-+.+-...
T Consensus       250 ~I~vIDFGsAtf~~e~  265 (415)
T KOG0671|consen  250 AIKVIDFGSATFDHEH  265 (415)
T ss_pred             ceEEEecCCcceeccC
Confidence            3688899988765443

>PRK14879 serine/threonine protein kinase; Provisional

Probab=98.73  E-value=8.9e-08  Score=50.90  Aligned_cols=63  Identities=19%  Similarity=0.420  Sum_probs=51.1

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      +|++|.+++....      . ....++.+++.++.++|..   +++|+|+++.|++++ ...+++.|||.+...
T Consensus        82 ~G~~L~~~~~~~~------~-~~~~i~~~i~~~l~~lH~~---~i~H~Dl~p~Nil~~-~~~~~liDf~~a~~~  144 (211)
T PRK14879         82 EGEPLKDLINSNG------M-EELELSREIGRLVGKLHSA---GIIHGDLTTSNMILS-GGKIYLIDFGLAEFS  144 (211)
T ss_pred             CCcCHHHHHHhcc------H-HHHHHHHHHHHHHHHHHhC---CcccCCCCcccEEEE-CCCEEEEECCcccCC
Confidence            4677777765321      1 5667788999999999988   999999999999998 677899999987653

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=98.73  E-value=9.3e-08  Score=52.17  Aligned_cols=62  Identities=24%  Similarity=0.402  Sum_probs=48.8

Q ss_pred             CcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            4 GSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         4 g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      .+|.+++...    .++...    ..+++.++.++|..   +++|+|+++.|++++.+..++++|||.+....
T Consensus       132 ~~L~~~l~~~----~l~~~~----~~~i~~~l~~lH~~---GI~HrDlkp~NILv~~~~~v~LIDfg~~~~~~  193 (239)
T PRK01723        132 RDLVALLQEA----PLSEEQ----WQAIGQLIARFHDA---GVYHADLNAHNILLDPDGKFWLIDFDRGELRT  193 (239)
T ss_pred             CCHHHHHhcC----CCCHHH----HHHHHHHHHHHHHC---CCCCCCCCchhEEEcCCCCEEEEECCCcccCC
Confidence            4677666542    233332    46788899999988   99999999999999888889999999887654

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=98.73  E-value=4.5e-08  Score=54.01  Aligned_cols=57  Identities=33%  Similarity=0.490  Sum_probs=49.9

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123           18 ELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus        18 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      .+++.....++.+++.++.|+|..  .+++|+|+++.|++++....+++.|||++..+.
T Consensus       103 ~l~~~~~~~i~~~i~~~l~~lh~~--~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~  159 (288)
T cd06616         103 VIPEEILGKIAVATVKALNYLKEE--LKIIHRDVKPSNILLDRNGNIKLCDFGISGQLV  159 (288)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHhhc--CCeeccCCCHHHEEEccCCcEEEeecchhHHhc
Confidence            578888999999999999999852  179999999999999988899999999886543

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=98.72  E-value=5.3e-08  Score=58.34  Aligned_cols=48  Identities=23%  Similarity=0.470  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123           25 VSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus        25 ~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      ..++.+++.++.++|..   +++|+|+++.|+++ .+..+++.|||+++...
T Consensus       431 ~~~~~~i~~~L~~lH~~---giiHrDlkp~NILl-~~~~~~liDFGla~~~~  478 (535)
T PRK09605        431 PELVRKVGEIVAKLHKA---GIVHGDLTTSNFIV-RDDRLYLIDFGLGKYSD  478 (535)
T ss_pred             HHHHHHHHHHHHHHHhC---CCccCCCChHHEEE-ECCcEEEEeCcccccCC
Confidence            45778899999999988   99999999999999 56788999999987654

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=98.68  E-value=9.8e-08  Score=50.36  Aligned_cols=47  Identities=21%  Similarity=0.514  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123           26 SIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus        26 ~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      .++.+++.++.++|..   +++|+|+++.|++++ +..+++.|||++....
T Consensus        94 ~~~~~i~~~l~~lH~~---gi~H~Dl~~~Nil~~-~~~~~liDfg~a~~~~  140 (199)
T TIGR03724        94 ELLREIGRLVGKLHKA---GIVHGDLTTSNIIVR-DDKLYLIDFGLGKYSD  140 (199)
T ss_pred             HHHHHHHHHHHHHHHC---CeecCCCCcceEEEE-CCcEEEEECCCCcCCC
Confidence            6778899999999988   999999999999998 7789999999877643

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.60  E-value=4.6e-07  Score=57.39  Aligned_cols=60  Identities=35%  Similarity=0.596  Sum_probs=50.5

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEE
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASV   66 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i   66 (84)
                      |++|+|.++++.      +++.....++.|++.|+.|+|..+..+++|+|+++.|++++.+...++
T Consensus       765 ~~~g~L~~~l~~------l~~~~~~~i~~~ia~~L~yLH~~~~~~iiH~dlkp~Nil~~~~~~~~~  824 (968)
T PLN00113        765 IEGKNLSEVLRN------LSWERRRKIAIGIAKALRFLHCRCSPAVVVGNLSPEKIIIDGKDEPHL  824 (968)
T ss_pred             CCCCcHHHHHhc------CCHHHHHHHHHHHHHHHHHhccCCCCCeecCCCCHHhEEECCCCceEE
Confidence            468999999863      678888999999999999999655569999999999999987665554

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=98.60  E-value=2.2e-07  Score=49.19  Aligned_cols=50  Identities=16%  Similarity=0.245  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123           24 RVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus        24 ~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      ...++.++..++.++|..   +++|+|+++.|++++.+..+++.|||.+....
T Consensus       127 ~~~~~~~i~~~l~~lh~~---gi~H~Dl~p~Nill~~~~~~~liDfg~~~~~~  176 (198)
T cd05144         127 PEEVLDEILEEIVKAYKH---GIIHGDLSEFNILVDDDEKIYIIDWPQMVSTD  176 (198)
T ss_pred             HHHHHHHHHHHHHHHHHC---CCCcCCCCcccEEEcCCCcEEEEECCccccCC
Confidence            345678888899999988   99999999999999988999999999986554

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=98.54  E-value=4.3e-07  Score=55.30  Aligned_cols=65  Identities=26%  Similarity=0.452  Sum_probs=56.3

Q ss_pred             cHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            5 SLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         5 ~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      ||+.++....   .+.......++.|++.|+.|+|..   ++.|+++++.|+++.....+++.|||.+...
T Consensus       406 Dlf~~~~~~~---~~~~~e~~c~fKqL~~Gv~y~h~~---GiahrdlK~enll~~~~g~lki~Dfg~~~vf  470 (601)
T KOG0590|consen  406 DLFSLVMSNG---KLTPLEADCFFKQLLRGVKYLHSM---GLAHRDLKLENLLVTENGILKIIDFGAASVF  470 (601)
T ss_pred             HHHHHHhccc---ccchhhhhHHHHHHHHHHHHHHhc---CceeccCccccEEEecCCceEEeecCcceee
Confidence            7777776542   367788888999999999999988   9999999999999999999999999987654

>cd05119 RIO RIO kinase family, catalytic domain

Probab=98.47  E-value=4.9e-07  Score=47.25  Aligned_cols=52  Identities=21%  Similarity=0.276  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHHHHHHhc-CCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123           22 TKRVSIVKSVAHALSYLHH-DCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus        22 ~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      .....++.+++.++.++|. .   +++|+|+++.|++++ +..+++.|||.+.....
T Consensus       114 ~~~~~~~~~~~~~l~~lh~~~---~ivH~Dl~p~Nili~-~~~~~liDfg~a~~~~~  166 (187)
T cd05119         114 EDPEELYDQILELMRKLYREA---GLVHGDLSEYNILVD-DGKVYIIDVPQAVEIDH  166 (187)
T ss_pred             ccHHHHHHHHHHHHHHHhhcc---CcCcCCCChhhEEEE-CCcEEEEECcccccccC
Confidence            4456778899999999998 7   999999999999999 78899999999977654

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=98.46  E-value=3.1e-06  Score=46.59  Aligned_cols=74  Identities=35%  Similarity=0.495  Sum_probs=58.7

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCC-cEEEcccccceeccCC
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNL-EASVADFGTARLLHVD   78 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~i~~~g~~~~~~~~   78 (84)
                      .++++.+++........+.......+..|++.++.++|..   +++|+|+++.|+++.... ..++.|||.+..+...
T Consensus        81 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~H~~---~~~hrd~kp~nil~~~~~~~~~l~dfg~~~~~~~~  155 (384)
T COG0515          81 DGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLHSK---GIIHRDIKPENILLDRDGRVVKLIDFGLAKLLPDP  155 (384)
T ss_pred             CCCcHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHeeecCCCCeEEEeccCcceecCCC
Confidence            4566776665432101477888899999999999999988   899999999999999877 6999999998755443

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=98.45  E-value=8.3e-07  Score=51.72  Aligned_cols=69  Identities=28%  Similarity=0.377  Sum_probs=57.8

Q ss_pred             CcHHHHHhc-----CCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            4 GSLFCVLRD-----DDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         4 g~L~~~l~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      |.|..|+..     -..+..+...+++.++.|+..++.|+|..   +++|.|+.++|+++++....|+.|-.+++-+
T Consensus       373 gNLK~FL~~Cr~~~~~~aqtvtt~qlV~masQla~am~hlh~~---~ViHkDiAaRNCvIdd~LqVkltDsaLSRDL  446 (563)
T KOG1024|consen  373 GNLKSFLQICRGDDPSYAQTVTTIQLVLMASQLAMAMEHLHNH---GVIHKDIAARNCVIDDQLQVKLTDSALSRDL  446 (563)
T ss_pred             chHHHHHHHhccCCCccccchhHHHHHHHHHHHHHHHHHHHhc---CcccchhhhhcceehhheeEEeccchhcccc
Confidence            678888883     22233566778889999999999999988   9999999999999999999999998877643

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=98.34  E-value=5.7e-07  Score=55.06  Aligned_cols=70  Identities=29%  Similarity=0.424  Sum_probs=58.2

Q ss_pred             CCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccCC
Q 040123            3 RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVD   78 (84)
Q Consensus         3 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~~   78 (84)
                      +|+|.+.-.--+   ++++.+....+++.+.++.|+|+.   +-+|+|++-.|+++......++.|||.+..++..
T Consensus        96 ggslQdiy~~Tg---plselqiayvcRetl~gl~ylhs~---gk~hRdiKGanilltd~gDvklaDfgvsaqitat  165 (829)
T KOG0576|consen   96 GGSLQDIYHVTG---PLSELQIAYVCRETLQGLKYLHSQ---GKIHRDIKGANILLTDEGDVKLADFGVSAQITAT  165 (829)
T ss_pred             CCcccceeeecc---cchhHHHHHHHhhhhccchhhhcC---CcccccccccceeecccCceeecccCchhhhhhh
Confidence            455555433222   688899999999999999999988   8899999999999999999999999998776543

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=98.34  E-value=3.6e-06  Score=50.71  Aligned_cols=71  Identities=27%  Similarity=0.340  Sum_probs=55.8

Q ss_pred             cHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCC-CCcEEEcccccceeccCC
Q 040123            5 SLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL-NLEASVADFGTARLLHVD   78 (84)
Q Consensus         5 ~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~i~~~g~~~~~~~~   78 (84)
                      .|...|++.+...-+....+..|+.|+..++.++-.+   +++|.|++|.||++.. +..+|+.|||.|.....+
T Consensus       519 NLRevLKKyG~nvGL~ikaVRsYaqQLflALklLK~c---~vlHaDIKPDNiLVNE~k~iLKLCDfGSA~~~~en  590 (752)
T KOG0670|consen  519 NLREVLKKYGRNVGLHIKAVRSYAQQLFLALKLLKKC---GVLHADIKPDNILVNESKNILKLCDFGSASFASEN  590 (752)
T ss_pred             hHHHHHHHhCcccceeehHHHHHHHHHHHHHHHHHhc---CeeecccCccceEeccCcceeeeccCccccccccc
Confidence            3455666655433455667788999999999999988   9999999999999975 567899999988765543

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=98.31  E-value=3.5e-06  Score=53.66  Aligned_cols=66  Identities=20%  Similarity=0.274  Sum_probs=55.1

Q ss_pred             CCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCC-------CCcEEEccccccee
Q 040123            3 RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL-------NLEASVADFGTARL   74 (84)
Q Consensus         3 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~~~i~~~g~~~~   74 (84)
                      -|+|.+++....   .+.+-....++.|++.-+..+|..   +|||.|+++.|+++..       ...++++|||.+--
T Consensus       778 ~Gtlld~~N~~~---~m~e~lv~~~~~qml~ive~lH~~---~IIHgDiKPDNfll~~~~~~~~~~~~l~lIDfG~siD  850 (974)
T KOG1166|consen  778 YGTLLDLINTNK---VMDEYLVMFFSCQMLRIVEHLHAM---GIIHGDIKPDNFLLRREICADSDSKGLYLIDFGRSID  850 (974)
T ss_pred             cccHHHhhccCC---CCCchhhhHHHHHHHHHHHHHHhc---ceecccCCcceeEeecccCCCCcccceEEEeccccee
Confidence            488888887443   688888889999999999999988   9999999999999943       24589999997643

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=98.29  E-value=3.8e-06  Score=48.79  Aligned_cols=53  Identities=30%  Similarity=0.493  Sum_probs=46.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCC-CCcEEEccccccee
Q 040123           19 LNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL-NLEASVADFGTARL   74 (84)
Q Consensus        19 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~i~~~g~~~~   74 (84)
                      ++...+..|+..+..++.++|..   +++|+|+++.|+++.. .....+.|||++..
T Consensus       129 l~~~~i~~Yl~~ll~Al~~~h~~---GIvHRDiKpsNFL~n~~t~rg~LvDFgLA~~  182 (418)
T KOG1167|consen  129 LSLAEIRWYLRNLLKALAHLHKN---GIVHRDIKPSNFLYNRRTQRGVLVDFGLAQR  182 (418)
T ss_pred             CCHHHHHHHHHHHHHHhhhhhcc---CccccCCCccccccccccCCceEEechhHHH
Confidence            55677788899999999999998   9999999999999975 46778999999874

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=98.28  E-value=3.1e-07  Score=51.00  Aligned_cols=57  Identities=32%  Similarity=0.499  Sum_probs=45.9

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123           18 ELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus        18 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      .+++..+-.+......++.|+...  ..++|+|++++||+++..+.+|+.|||.+..+.
T Consensus       163 ~ipE~Ilg~ItvatV~AL~yLK~~--lkiIHRDvKPSNILldr~G~vKLCDFGIcGqLv  219 (361)
T KOG1006|consen  163 RIPENILGHITVATVDALDYLKEE--LKIIHRDVKPSNILLDRHGDVKLCDFGICGQLV  219 (361)
T ss_pred             cCcHhhhhheeeeehhHHHHHHHH--hhhhhccCChhheEEecCCCEeeecccchHhHH
Confidence            356666656655667788888654  589999999999999999999999999887654

>KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms]

Probab=98.27  E-value=5.5e-06  Score=48.65  Aligned_cols=61  Identities=33%  Similarity=0.466  Sum_probs=46.6

Q ss_pred             cHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeC--CC--CcEEEcccccc
Q 040123            5 SLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLD--LN--LEASVADFGTA   72 (84)
Q Consensus         5 ~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~--~~~~i~~~g~~   72 (84)
                      +|..|+....    .+......++.|++.++.|+|..   ++.|+|++..||++.  .+  ..+.+.|||++
T Consensus       328 tLr~yl~~~~----~s~r~~~~~laQlLEav~hL~~h---gvAhRDlKSDNiL~ElddD~~P~LVvaDFGCc  392 (598)
T KOG4158|consen  328 TLREYLWTRH----RSYRTGRVILAQLLEAVTHLHKH---GVAHRDLKSDNILLELDDDEIPQLVVADFGCC  392 (598)
T ss_pred             hHHHHHhcCC----CchHHHHHHHHHHHHHHHHHHHc---cchhhcccccceEEEecCCCCcEEEEccccee
Confidence            3455555443    45566677889999999999988   999999999999983  22  24678999975

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.22  E-value=4.6e-06  Score=49.67  Aligned_cols=55  Identities=25%  Similarity=0.502  Sum_probs=44.4

Q ss_pred             CcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCC
Q 040123            4 GSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLN   61 (84)
Q Consensus         4 g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   61 (84)
                      -.|..+|....=. -++-..+..++.|++.|+.|+|..|  +++|.|+++.|+++..+
T Consensus       170 dnLLklI~~s~Yr-Glpl~~VK~I~~qvL~GLdYLH~ec--gIIHTDlKPENvLl~~~  224 (590)
T KOG1290|consen  170 DNLLKLIKYSNYR-GLPLSCVKEICRQVLTGLDYLHREC--GIIHTDLKPENVLLCST  224 (590)
T ss_pred             hHHHHHHHHhCCC-CCcHHHHHHHHHHHHHHHHHHHHhc--CccccCCCcceeeeecc
Confidence            3577777754311 3677788899999999999999987  99999999999998654

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=98.14  E-value=2.1e-05  Score=39.23  Aligned_cols=55  Identities=25%  Similarity=0.292  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123           22 TKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus        22 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      ........+++.++..+|.....+++|+|+++.|+++.....+++.||+.+....
T Consensus        86 ~~~~~~~~~~~~~l~~lh~~~~~~i~H~Dl~~~Nil~~~~~~~~l~Df~~~~~~~  140 (155)
T cd05120          86 EEKEDIAEQLAELLAKLHQLPLLVLCHGDLHPGNILVDDGKILGIIDWEYAGYGP  140 (155)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCceEEEecCCCcceEEEECCcEEEEEecccccCCC
Confidence            4556677888889999997523369999999999999988889999999876543

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=98.12  E-value=6.1e-06  Score=45.01  Aligned_cols=46  Identities=17%  Similarity=0.278  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123           27 IVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus        27 ~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      ...++..++..+|..   +++|+|++|.|++++.+. +++.|||......
T Consensus       140 ~~~~i~~~l~~lH~~---gi~H~Dikp~Nili~~~g-i~liDfg~~~~~~  185 (232)
T PRK10359        140 VKAKIKASIESLHQH---GMVSGDPHKGNFIVSKNG-LRIIDLSGKRCTA  185 (232)
T ss_pred             HHHHHHHHHHHHHHc---CCccCCCChHHEEEeCCC-EEEEECCCccccc
Confidence            355888899999988   999999999999998777 9999999776553

>KOG1266 consensus Protein kinase [Signal transduction mechanisms]

Probab=98.07  E-value=1e-05  Score=46.45  Aligned_cols=66  Identities=23%  Similarity=0.309  Sum_probs=54.2

Q ss_pred             CCCCcHHHHHhcCC-CcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEc
Q 040123            1 MERGSLFCVLRDDD-EAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVA   67 (84)
Q Consensus         1 ~~~g~L~~~l~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~   67 (84)
                      |+.|++..||++-. ....+.......|+.|+.+++.|+|++ .+.++|.++.-..+++..+..+++.
T Consensus       154 mssgs~~~fLkrt~~~~~a~~~~~wkkw~tqIlsal~yLhs~-~PpiihgnlTc~tifiq~ngLIkig  220 (458)
T KOG1266|consen  154 MSSGSLKQFLKRTKKNQKALFQKAWKKWCTQILSALSYLHSC-DPPIIHGNLTCDTIFIQHNGLIKIG  220 (458)
T ss_pred             ccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhcc-CCccccCCcchhheeecCCceEEec
Confidence            57789999998633 233567778889999999999999987 8899999999999999877777755

>KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms]

Probab=97.94  E-value=3.8e-05  Score=45.95  Aligned_cols=71  Identities=32%  Similarity=0.606  Sum_probs=59.2

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCe-EecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSV-VHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      |+.|+|.+.+....  ..+.+.-...++..+..++.|+|..   .+ .|..+...|++.+....+|+.+||+.....
T Consensus        29 c~rGsl~D~i~~~~--~~~d~~F~~s~~rdi~~Gl~ylh~s---~i~~hg~l~s~nClvd~~w~lklt~~Gl~~~~~  100 (484)
T KOG1023|consen   29 CSRGSLLDILSNED--IKLDYFFILSFIRDISKGLAYLHNS---PIGYHGALKSSNCLVDSRWVLKLTDFGLNSLLE  100 (484)
T ss_pred             ecCccHHhHHhccc--cCccHHHHHHHHHHHHHHHHHHhcC---cceeeeeeccccceeeeeEEEEechhhhccccc
Confidence            45789999998743  2466777777889999999999977   44 899999999999999999999999877663

>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=97.89  E-value=9.8e-05  Score=39.59  Aligned_cols=66  Identities=23%  Similarity=0.377  Sum_probs=50.6

Q ss_pred             cHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCC---cEEEcccccceecc
Q 040123            5 SLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNL---EASVADFGTARLLH   76 (84)
Q Consensus         5 ~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~i~~~g~~~~~~   76 (84)
                      +|.+++....   ..+......++.++...+.-+|..   ++.|.|+.+.|+++..+.   .+.++||..++...
T Consensus       104 ~L~~~~~~~~---~~~~~~~~~ll~~l~~~i~~lH~~---gi~H~Dl~~~NILv~~~~~~~~~~lIDld~~~~~~  172 (206)
T PF06293_consen  104 DLRDLLQQWE---QLDPSQRRELLRALARLIAKLHDA---GIYHGDLNPSNILVDPDDGQYRFYLIDLDRMRFRP  172 (206)
T ss_pred             cHHHHHHhhc---ccchhhHHHHHHHHHHHHHHHHHC---cCCCCCCCcccEEEeCCCCceeEEEEcchhceeCC
Confidence            5666665432   134455667788888889999998   999999999999998776   78899998766543

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=97.86  E-value=0.00016  Score=40.39  Aligned_cols=66  Identities=27%  Similarity=0.273  Sum_probs=49.1

Q ss_pred             cHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCC-------CCcEEEccccccee
Q 040123            5 SLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL-------NLEASVADFGTARL   74 (84)
Q Consensus         5 ~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~~~i~~~g~~~~   74 (84)
                      +|.+++...... ..+......++.++...+.-+|..   +++|+|+.+.|++++.       ...+.++||+.+..
T Consensus       122 sL~~~~~~~~~~-~~~~~~~~~ll~~la~~i~~LH~~---Gi~HgDL~~~NiLl~~~~~~~~~~~~~~LIDl~r~~~  194 (268)
T PRK15123        122 SLEDYCADWATN-PPDPRLKRMLIKRVATMVRDMHAA---GINHRDCYICHFLLHLPFPGREEDLKLSVIDLHRAQI  194 (268)
T ss_pred             cHHHHHHhhccc-CCCHHHHHHHHHHHHHHHHHHHHC---cCccCCCChhhEEEeccccCCCCCceEEEEECCcccc
Confidence            566666532211 234455667788888999999998   9999999999999974       35688999987753

>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]

Probab=97.77  E-value=0.00031  Score=37.65  Aligned_cols=67  Identities=18%  Similarity=0.332  Sum_probs=47.4

Q ss_pred             cHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCC---CcEEEcccccceec
Q 040123            5 SLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLN---LEASVADFGTARLL   75 (84)
Q Consensus         5 ~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~i~~~g~~~~~   75 (84)
                      .+.+|+....... ........++..+-..+.-+|..   .++|.|+.++||++..+   ....+.|||++..-
T Consensus        97 ~vk~~i~~~~~~~-~~d~~~~~~~~~iG~~igklH~n---diiHGDLTTSNill~~~~~~~~~~lIdfgls~~s  166 (229)
T KOG3087|consen   97 TVKDFILSTMEDE-SEDEGLAELARRIGELIGKLHDN---DIIHGDLTTSNILLRSDGNQITPILIDFGLSSVS  166 (229)
T ss_pred             HHHHHHHHHccCc-ccchhHHHHHHHHHHHHHHhhhC---CeecccccccceEEecCCCcCceEEEeecchhcc
Confidence            4556666554321 22333356777787889999988   99999999999998543   34478999987643

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=97.70  E-value=2.3e-05  Score=46.85  Aligned_cols=71  Identities=25%  Similarity=0.385  Sum_probs=56.8

Q ss_pred             CCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccCCC
Q 040123            3 RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDS   79 (84)
Q Consensus         3 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~~~   79 (84)
                      -++|.++|..+......+......++.|+..++.|   +   +.+|+++++.|++...+...+|.|||+...+...+
T Consensus       340 ~~tledWl~rr~~~e~~s~s~~~~~~~q~~~~~~y---k---~~ihrdlkp~nif~~~d~q~kIgDFgl~ts~~~~~  410 (516)
T KOG1033|consen  340 KETLEDWLRRRRTGEERSLSLMLDIFKQIAPAVEY---K---GLIHRDLKPSNIFFSDDDQLKIGDFGLVTSQDKDE  410 (516)
T ss_pred             hhhHHHHhhCCCcccccchhHHHHHHHhhccchhh---c---cchhhhccccccccccchhhhhhhhhheeecccCC
Confidence            45788888765544456667788888999999988   5   88999999999999888889999999877665444

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=97.69  E-value=0.00026  Score=37.92  Aligned_cols=54  Identities=20%  Similarity=0.122  Sum_probs=41.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHH-hcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123           19 LNWTKRVSIVKSVAHALSYL-HHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus        19 ~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      ++......+..++...+..+ |..   +++|.|+++.|+++.. ..+.++||+-+-...
T Consensus       121 ~~~~~~~~i~~~i~~~l~~l~H~~---glVHGDLs~~NIL~~~-~~v~iIDF~qav~~~  175 (197)
T cd05146         121 LNDEEMKNAYYQVLSMMKQLYKEC---NLVHADLSEYNMLWHD-GKVWFIDVSQSVEPT  175 (197)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEEC-CcEEEEECCCceeCC
Confidence            33444556677888888877 777   9999999999999964 568899999776553

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=97.68  E-value=0.00033  Score=41.67  Aligned_cols=40  Identities=25%  Similarity=0.333  Sum_probs=34.8

Q ss_pred             HHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123           35 LSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus        35 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      +..+|..   +++|+|+++.|+++..+..+++.|||++..+.+
T Consensus       270 l~ql~~~---g~~H~D~hPgNilv~~~g~i~liDfG~~~~l~~  309 (437)
T TIGR01982       270 LNQVLRD---GFFHADLHPGNIFVLKDGKIIALDFGIVGRLSE  309 (437)
T ss_pred             HHHHHhC---CceeCCCCcccEEECCCCcEEEEeCCCeeECCH
Confidence            5567766   999999999999999888999999999887653

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=97.66  E-value=0.00022  Score=38.06  Aligned_cols=46  Identities=26%  Similarity=0.496  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123           26 SIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus        26 ~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      .++..+-.-+.-+|..   +++|.|++++|+.+.... +.++|||++..-
T Consensus        96 ~~~r~vG~~vg~lH~~---givHGDLTtsNiIl~~~~-i~~IDfGLg~~s  141 (204)
T COG3642          96 DLLREVGRLVGKLHKA---GIVHGDLTTSNIILSGGR-IYFIDFGLGEFS  141 (204)
T ss_pred             HHHHHHHHHHHHHHhc---CeecCCCccceEEEeCCc-EEEEECCccccc
Confidence            4555665667789988   999999999999987654 788999998753

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=97.65  E-value=4.4e-05  Score=46.51  Aligned_cols=68  Identities=26%  Similarity=0.310  Sum_probs=56.2

Q ss_pred             CCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            3 RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         3 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      ||+++..+.+..   .+.+.....+..+.+.++.++|..   ++++++++..|++++..+.+++.|||+.+...
T Consensus        81 gg~lft~l~~~~---~f~~~~~~~~~aelaLald~lh~l---~iiyrd~k~enilld~~Ghi~~tdfglske~v  148 (612)
T KOG0603|consen   81 GGDLFTRLSKEV---MFDELDVAFYLAELALALDHLHKL---GIAYRDYKLENVLLLLEGHIKLTDFGLSKEAV  148 (612)
T ss_pred             cchhhhccccCC---chHHHHHHHHHHHHHHHHhhcchh---HHHHhcccccceeecccCccccCCchhhhHhH
Confidence            556666555443   466777778889999999999988   99999999999999999999999999887643

>cd05151 ChoK Choline Kinase (ChoK)

Probab=97.58  E-value=0.00034  Score=35.90  Aligned_cols=48  Identities=27%  Similarity=0.351  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHHhcCC--CCCeEecCCCCCcEEeCCCCcEEEccccccee
Q 040123           26 SIVKSVAHALSYLHHDC--TLSVVHRDISSNNILLDLNLEASVADFGTARL   74 (84)
Q Consensus        26 ~~~~~i~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~   74 (84)
                      ....++...+..+|...  ...++|+|+++.|++++ +..+++.||+.+..
T Consensus        87 ~~~~~l~~~l~~LH~~~~~~~~~~HgD~~~~Nil~~-~~~~~liDf~~a~~  136 (170)
T cd05151          87 ENLEKIAKLLKKLHSSPLPDLVPCHNDLLPGNFLLD-DGRLWLIDWEYAGM  136 (170)
T ss_pred             HHHHHHHHHHHHHhCCCCCCceeecCCCCcCcEEEE-CCeEEEEecccccC
Confidence            34567888899999771  11259999999999998 55789999998764

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=97.42  E-value=0.0007  Score=38.31  Aligned_cols=44  Identities=27%  Similarity=0.407  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccce
Q 040123           27 IVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTAR   73 (84)
Q Consensus        27 ~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~   73 (84)
                      +-.|+...+.++|..   +++|.++++.|++++.++...+.||+...
T Consensus       150 lT~Q~I~lvA~Lh~~---GlVHgdi~~~nfll~~~G~v~Lg~F~~~~  193 (288)
T PF14531_consen  150 LTVQMIRLVANLHSY---GLVHGDIKPENFLLDQDGGVFLGDFSSLV  193 (288)
T ss_dssp             HHHHHHHHHHHHHHT---TEEEST-SGGGEEE-TTS-EEE--GGGEE
T ss_pred             HHHHHHHHHHHHhhc---ceEecccceeeEEEcCCCCEEEcChHHHe
Confidence            347778889999998   99999999999999999999999997543

>PRK09902 hypothetical protein; Provisional

Probab=97.26  E-value=0.0029  Score=34.47  Aligned_cols=66  Identities=18%  Similarity=0.119  Sum_probs=48.5

Q ss_pred             CcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCc--EEEcccccce
Q 040123            4 GSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLE--ASVADFGTAR   73 (84)
Q Consensus         4 g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~i~~~g~~~   73 (84)
                      -+|.+++.+..-. ..+......+..++...+.-+|..   ++.|+++.+.+|+++....  +.++||--++
T Consensus       111 ~~L~~~l~~~~~~-~~~~~~k~~il~~va~~ia~LH~~---Gv~Hgdly~khIll~~~g~~~v~lIDlEk~r  178 (216)
T PRK09902        111 ISIADWYAQHAVS-PYSDEVRQAMLKAVALAFKKMHSV---NRQHGCCYVRHIYVKTEGKAEAGFLDLEKSR  178 (216)
T ss_pred             ccHHHHHhcCCcC-CcchHHHHHHHHHHHHHHHHHHHC---CCcCCCCCHhheeecCCCCeeEEEEEhhccc
Confidence            3677777553211 345566667788888999999998   9999999999999975444  7788875443

>KOG3741 consensus Poly(A) ribonuclease subunit [RNA processing and modification]

Probab=97.16  E-value=0.0026  Score=39.03  Aligned_cols=59  Identities=15%  Similarity=0.228  Sum_probs=52.0

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccCCC
Q 040123           18 ELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDS   79 (84)
Q Consensus        18 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~~~   79 (84)
                      ..++..+|.++.|+..++.++|+.   ++..+.+.+.++++..+..++++..|....+..++
T Consensus       389 ~~~e~~lW~y~~QLtaaL~sIHss---GLAck~L~~~kIlv~G~~RIriS~C~i~Dvl~~d~  447 (655)
T KOG3741|consen  389 KAPEEVLWSYISQLTAALYSIHSS---GLACKTLDLKKILVTGKMRIRISGCGIMDVLQEDP  447 (655)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHhc---CceeecccHhHeEeeCcceEEEecccceeeecCCC
Confidence            467889999999999999999988   99889999999999988899999888777766554

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=97.07  E-value=0.0042  Score=38.11  Aligned_cols=33  Identities=24%  Similarity=0.398  Sum_probs=29.5

Q ss_pred             CeEecCCCCCcEEeCCCC----cEEEcccccceeccC
Q 040123           45 SVVHRDISSNNILLDLNL----EASVADFGTARLLHV   77 (84)
Q Consensus        45 ~~~~~~l~~~~~~~~~~~----~~~i~~~g~~~~~~~   77 (84)
                      +++|.|+++.|++++.+.    .+.+.|||+...+.+
T Consensus       280 GffHaDpHPGNIlv~~~g~~~~~i~llDFGivg~l~~  316 (537)
T PRK04750        280 GFFHADMHPGNIFVSYDPPENPRYIALDFGIVGSLNK  316 (537)
T ss_pred             CeeeCCCChHHeEEecCCCCCCeEEEEecceEEECCH
Confidence            899999999999998776    899999999887754

>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=97.06  E-value=0.0083  Score=32.02  Aligned_cols=48  Identities=29%  Similarity=0.454  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHHH-HhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123           25 VSIVKSVAHALSY-LHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus        25 ~~~~~~i~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      ..++.++...+.. +|..   +++|.|++..|+++..+ .+.++|||-+....
T Consensus       109 ~~~~~~il~~~~~~~~~~---givHGDLs~~NIlv~~~-~~~iIDf~qav~~~  157 (188)
T PF01163_consen  109 KELLEEILEEIIKMLHKA---GIVHGDLSEYNILVDDG-KVYIIDFGQAVDSS  157 (188)
T ss_dssp             HHHHHHHHHHHHHHHHCT---TEEESS-STTSEEEETT-CEEE--GTTEEETT
T ss_pred             HHHHHHHHHHHHHHHHhc---CceecCCChhhEEeecc-eEEEEecCcceecC
Confidence            3445555554444 5677   99999999999999877 89999998775544

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=97.04  E-value=0.0013  Score=43.43  Aligned_cols=47  Identities=32%  Similarity=0.300  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccc
Q 040123           23 KRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTA   72 (84)
Q Consensus        23 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~   72 (84)
                      ...-++-|++.++..||..   ++.|+|++.+|+++..-+.+.+.||.-.
T Consensus       121 EKkWiaFQLL~al~qcH~~---gVcHGDIKsENILiTSWNW~~LtDFAsF  167 (1431)
T KOG1240|consen  121 EKKWIAFQLLKALSQCHKL---GVCHGDIKSENILITSWNWLYLTDFASF  167 (1431)
T ss_pred             HHHHHHHHHHHHHHHHHHc---CccccccccceEEEeeechhhhhccccc
Confidence            4444578999999999988   9999999999999988888888998743

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=96.76  E-value=0.0011  Score=43.38  Aligned_cols=41  Identities=32%  Similarity=0.588  Sum_probs=37.4

Q ss_pred             HHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEccccccee
Q 040123           31 VAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARL   74 (84)
Q Consensus        31 i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~   74 (84)
                      ++.+++|+|..   +++|+++++.|.++..-+.+|+.|||+.+.
T Consensus       152 mvla~Eylh~y---givhrdlkpdnllIT~mGhiKlTDfgLsk~  192 (1205)
T KOG0606|consen  152 MVLAVEYLHSY---GIVHRDLKPDNLLITSMGHIKLTDFGLSKK  192 (1205)
T ss_pred             hhHHhHhhccC---CeecCCCCCCcceeeecccccccchhhhhh
Confidence            36789999988   999999999999999999999999998765

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=96.59  E-value=0.0007  Score=41.86  Aligned_cols=71  Identities=34%  Similarity=0.480  Sum_probs=54.1

Q ss_pred             CCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHh-cCCCCCeEecCCCCCcEEeCCCC-cEEEcccccceeccC
Q 040123            3 RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLH-HDCTLSVVHRDISSNNILLDLNL-EASVADFGTARLLHV   77 (84)
Q Consensus         3 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~-~~~i~~~g~~~~~~~   77 (84)
                      +|++++.+..... ...+......++.|+..++.|.| ..   .+.|+++++.|.+++... ..++.|||++..+..
T Consensus       105 g~~~f~~i~~~~~-~~~~~~~~~~~~~ql~s~l~~~H~~~---~~~h~~ikP~n~~l~~s~~~l~~~df~~At~~~~  177 (601)
T KOG0590|consen  105 GGSLFSKISHPDS-TGTSSSSASRYLPQLNSGLSYLHPEN---GVTHRDIKPSNSLLDESGSALKIADFGLATAYRN  177 (601)
T ss_pred             ccccccccccCCc-cCCCCcchhhhhhhhccCccccCccc---ccccCCCCCccchhccCCCcccCCCchhhccccc
Confidence            4556555521111 03455667788999999999999 77   999999999999998887 899999999876654

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=95.54  E-value=0.029  Score=34.50  Aligned_cols=56  Identities=25%  Similarity=0.334  Sum_probs=47.2

Q ss_pred             CCHHHHHHHHHHHHH----HHHHHhcCCCCCeEecCCCCCcEEeCCC-CcEEEcccccceeccC
Q 040123           19 LNWTKRVSIVKSVAH----ALSYLHHDCTLSVVHRDISSNNILLDLN-LEASVADFGTARLLHV   77 (84)
Q Consensus        19 ~~~~~~~~~~~~i~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~i~~~g~~~~~~~   77 (84)
                      ++...++....+...    |+.++|..   .++|.++++.+++...+ ..++..+||+...+..
T Consensus       215 ~p~~~l~~~~~~~~~~~~~al~~~hs~---~~~~~~~kp~~i~~~~~~~s~~~~df~~v~~i~~  275 (524)
T KOG0601|consen  215 LPDNLLWNSLRDWLSRDVTALSHLHSN---NIVHDDLKPANIFTTSDWTSCKLTDFGLVSKISD  275 (524)
T ss_pred             CCchhhhhHHhhhhhcccccccccCCC---cccccccchhheecccccceeecCCcceeEEccC
Confidence            666777777777777    99999998   99999999999999888 7889999997666544

>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY)

Probab=95.10  E-value=0.093  Score=29.04  Aligned_cols=41  Identities=22%  Similarity=0.302  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccce
Q 040123           29 KSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTAR   73 (84)
Q Consensus        29 ~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~   73 (84)
                      ..+...+.-+|..   ++.|.|..+.|+++.. ..+.+.|++..+
T Consensus       142 ~ki~~~ikqlH~~---G~~HGD~hpgNFlv~~-~~i~iID~~~k~  182 (229)
T PF06176_consen  142 EKIVEAIKQLHKH---GFYHGDPHPGNFLVSN-NGIRIIDTQGKR  182 (229)
T ss_pred             HHHHHHHHHHHHc---CCccCCCCcCcEEEEC-CcEEEEECcccc
Confidence            4456678889988   9999999999998874 448889987654

The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=94.73  E-value=0.1  Score=33.12  Aligned_cols=45  Identities=20%  Similarity=0.413  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccce
Q 040123           27 IVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTAR   73 (84)
Q Consensus        27 ~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~   73 (84)
                      -+.|++.++.|+|..|  +++|.++....+++...+..++.+|-+..
T Consensus       109 Gl~qIl~AL~FL~~d~--~lvHgNv~~~SVfVn~~GeWkLggle~v~  153 (690)
T KOG1243|consen  109 GLFQILAALSFLNDDC--NLVHGNVCKDSVFVNESGEWKLGGLELVS  153 (690)
T ss_pred             HHHHHHHHHHHHhccC--CeeeccEeeeeEEEcCCCcEEEeeeEEEe
Confidence            3688999999998554  89999999999999999999999876553

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=94.73  E-value=0.055  Score=31.15  Aligned_cols=63  Identities=22%  Similarity=0.420  Sum_probs=45.6

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEE
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEAS   65 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~   65 (84)
                      |+.|+|...+...- ...+...+.+.++..++.++.|+|+- .+-+....+....+.++.+...+
T Consensus       269 mp~gslynvlhe~t-~vvvd~sqav~faldiargmaflhsl-ep~ipr~~lns~hvmidedltar  331 (448)
T KOG0195|consen  269 MPFGSLYNVLHEQT-SVVVDHSQAVRFALDIARGMAFLHSL-EPMIPRFYLNSKHVMIDEDLTAR  331 (448)
T ss_pred             ccchHHHHHHhcCc-cEEEecchHHHHHHHHHhhHHHHhhc-chhhhhhhcccceEEecchhhhh
Confidence            56788988886543 34577889999999999999999976 33344445677777877665433

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=94.35  E-value=0.036  Score=34.10  Aligned_cols=52  Identities=27%  Similarity=0.459  Sum_probs=42.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCC-CcEEEcccccce
Q 040123           19 LNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLN-LEASVADFGTAR   73 (84)
Q Consensus        19 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~i~~~g~~~   73 (84)
                      +.+...+....|++.++.++|..   ..+|.|+++.|+++..+ ...++.++++..
T Consensus       363 ~d~~~~~~~~~q~~~~l~~i~s~---~~~~~d~~psni~i~~~~~~~~~~~~~~~t  415 (524)
T KOG0601|consen  363 LDEDPRLRLTAQILTALNVIHSK---LFVHLDVKPSNILISNDGFFSKLGDFGCWT  415 (524)
T ss_pred             cCcchhhhhHHHHHhccccccch---hhhcccccccceeeccchhhhhcccccccc
Confidence            45556677788999999999977   99999999999999765 666777777654

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=93.99  E-value=0.42  Score=29.72  Aligned_cols=33  Identities=27%  Similarity=0.346  Sum_probs=29.7

Q ss_pred             CeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123           45 SVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus        45 ~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      ++.|.|..+.|+++..+..+-..|||....+.+
T Consensus       285 gffHaDpHpGNi~v~~~g~i~~lDfGi~g~l~~  317 (517)
T COG0661         285 GFFHADPHPGNILVRSDGRIVLLDFGIVGRLDP  317 (517)
T ss_pred             CccccCCCccceEEecCCcEEEEcCcceecCCH
Confidence            899999999999999999999999998776653

>cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members

Probab=93.50  E-value=0.13  Score=28.18  Aligned_cols=31  Identities=26%  Similarity=0.383  Sum_probs=25.5

Q ss_pred             CCeEecCCCCCcEEeCCCCcEEEccccccee
Q 040123           44 LSVVHRDISSNNILLDLNLEASVADFGTARL   74 (84)
Q Consensus        44 ~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~   74 (84)
                      ..++|.|+.+.|++++.+....+.||+.+..
T Consensus       164 ~~l~HGD~~~~Nvlv~~~~i~giIDw~~a~~  194 (235)
T cd05155         164 PVWFHGDLAPGNLLVQDGRLSAVIDFGCLGV  194 (235)
T ss_pred             ceEEeCCCCCCcEEEECCCEEEEEeCcccCc
Confidence            3689999999999998766667999987643

The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resista

>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]

Probab=93.40  E-value=0.28  Score=28.24  Aligned_cols=41  Identities=24%  Similarity=0.348  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccc
Q 040123           27 IVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFG   70 (84)
Q Consensus        27 ~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g   70 (84)
                      ++..++..+.-.-..   +++|.|++.-|++++.++.+.++||-
T Consensus       207 il~~il~~~~~~~~~---GiVHGDlSefNIlV~~dg~~~vIDwP  247 (304)
T COG0478         207 ILDKILEEVRKAYRR---GIVHGDLSEFNILVTEDGDIVVIDWP  247 (304)
T ss_pred             HHHHHHHHHHHHHHc---CccccCCchheEEEecCCCEEEEeCc
Confidence            334444444433345   89999999999999999999999984

>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]

Probab=93.33  E-value=0.93  Score=28.46  Aligned_cols=53  Identities=15%  Similarity=0.164  Sum_probs=38.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCC----CCcEEEcccccceecc
Q 040123           19 LNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL----NLEASVADFGTARLLH   76 (84)
Q Consensus        19 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~i~~~g~~~~~~   76 (84)
                      ++...+...+.+......+.+     +++|.|-.|.|+++.+    +..+.+.|+|+...+.
T Consensus       300 i~~~~i~~~l~~~~~~qIf~~-----GffHaDPHPGNilv~~~~~~~~~ivllDhGl~~~is  356 (538)
T KOG1235|consen  300 ISPHDILNKLVEAYLEQIFKT-----GFFHADPHPGNILVRPNPEGDEEIVLLDHGLYAVIS  356 (538)
T ss_pred             CCHHHHHHHHHHHHHHHHHhc-----CCccCCCCCCcEEEecCCCCCccEEEEccccccccc
Confidence            555555555666555555555     8999999999999984    5678899999876543

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=93.24  E-value=0.14  Score=27.24  Aligned_cols=31  Identities=29%  Similarity=0.348  Sum_probs=25.7

Q ss_pred             CCeEecCCCCCcEEeCC--CCcEEEccccccee
Q 040123           44 LSVVHRDISSNNILLDL--NLEASVADFGTARL   74 (84)
Q Consensus        44 ~~~~~~~l~~~~~~~~~--~~~~~i~~~g~~~~   74 (84)
                      ..++|+|+.+.|++++.  .....+.||..+..
T Consensus       174 ~~l~HgD~~~~Nil~~~~~~~~~~iID~e~~~~  206 (223)
T cd05154         174 PGLVHGDYRLGNVLFHPDEPRVVAVLDWELATL  206 (223)
T ss_pred             cEEEECCCCcccEEEcCCCCcEEEEEecccccc
Confidence            47899999999999987  45578999987654

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH)

Probab=92.69  E-value=0.14  Score=28.02  Aligned_cols=31  Identities=29%  Similarity=0.379  Sum_probs=26.1

Q ss_pred             CCeEecCCCCCcEEeCCCCcEEEccccccee
Q 040123           44 LSVVHRDISSNNILLDLNLEASVADFGTARL   74 (84)
Q Consensus        44 ~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~   74 (84)
                      ..++|.|+.+.|++++.+....++||+.+..
T Consensus       163 ~~l~HgD~~~~Nil~~~~~~~~iIDwe~a~~  193 (244)
T cd05150         163 LVVTHGDACLPNIIVDPGKFSGFIDLGRLGV  193 (244)
T ss_pred             eEEECCCCCCccEEEeCCcEEEEEEcccccc
Confidence            4689999999999998876678999987653

The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio

>PF12260 PIP49_C: Protein-kinase domain of FAM69; InterPro: IPR022049 Family with sequence similarity 69 has three members (A, B and C)

Probab=92.49  E-value=0.94  Score=24.29  Aligned_cols=53  Identities=19%  Similarity=0.207  Sum_probs=43.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEccccc
Q 040123           19 LNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGT   71 (84)
Q Consensus        19 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~   71 (84)
                      .+|.....++.+++..+.+++......+...|.++.|+.+..+..+++.|...
T Consensus        56 ~~w~~R~~iA~~lL~~l~~l~~~~~~~~~lcDv~~~nfgv~~~~~lk~iDld~  108 (188)
T PF12260_consen   56 SPWEQRAKIALQLLELLEELDHGPLGFFYLCDVSPDNFGVNDDGRLKLIDLDD  108 (188)
T ss_pred             cCHHHHHHHHHHHHHHHHHHhcCCCCcEEEeecchHHeEEeCCCcEEEEechh
Confidence            57888899999999988888874333678889999999999888899998754

Proteins in this uncharacterised family are described as transmembrane proteins.

>PRK05231 homoserine kinase; Provisional

Probab=92.00  E-value=0.18  Score=28.79  Aligned_cols=30  Identities=27%  Similarity=0.354  Sum_probs=25.1

Q ss_pred             CCeEecCCCCCcEEeCCCCcEEEcccccce
Q 040123           44 LSVVHRDISSNNILLDLNLEASVADFGTAR   73 (84)
Q Consensus        44 ~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~   73 (84)
                      .+++|.|+.+.|++++.+....+.||+.+.
T Consensus       187 ~~liHgD~~~~Nil~~~~~~~~iIDf~~~~  216 (319)
T PRK05231        187 RGVIHADLFRDNVLFEGDRLSGFIDFYFAC  216 (319)
T ss_pred             cccCCCCCCCCcEEEECCceEEEEeccccc
Confidence            379999999999999876666899998653

>cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes

Probab=91.43  E-value=0.36  Score=27.39  Aligned_cols=32  Identities=28%  Similarity=0.341  Sum_probs=26.4

Q ss_pred             CCCeEecCCCCCcEEeCCC----CcEEEccccccee
Q 040123           43 TLSVVHRDISSNNILLDLN----LEASVADFGTARL   74 (84)
Q Consensus        43 ~~~~~~~~l~~~~~~~~~~----~~~~i~~~g~~~~   74 (84)
                      ...+.|.|+.+.|++++.+    ..+.++||..+..
T Consensus       178 ~~~lcH~Dl~~~Nil~~~~~~~~~~i~lIDwEya~~  213 (302)
T cd05156         178 PVVFCHNDLQEGNILLLNPSSETKKLVLIDFEYASY  213 (302)
T ss_pred             CceEEecCCCcCeEEecCCCCCCCcEEEEeeCCCCC
Confidence            4478999999999999874    6788999987654

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=91.32  E-value=0.23  Score=31.75  Aligned_cols=47  Identities=28%  Similarity=0.426  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123           28 VKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus        28 ~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +.++..|+.|+|..  ..++|..+.+.++....+..+|+.+|+++....
T Consensus       105 l~~v~dgl~flh~s--Ak~VH~ni~p~~i~~na~~~wkl~Gf~f~v~~~  151 (700)
T KOG2137|consen  105 LGNVADGLAFLHRS--AKVVHGNIQPEAIVVNANGDWKLAGFSFCVNAN  151 (700)
T ss_pred             hhcccchhhhhccC--cceeecccchhheeeccCcceeeccchhhhccC
Confidence            34556788999965  589999999999999999999999998765433

>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily

Probab=91.23  E-value=0.22  Score=26.62  Aligned_cols=31  Identities=29%  Similarity=0.459  Sum_probs=20.6

Q ss_pred             CCeEecCCCCCcEEeC-CCCcEEEccccccee
Q 040123           44 LSVVHRDISSNNILLD-LNLEASVADFGTARL   74 (84)
Q Consensus        44 ~~~~~~~l~~~~~~~~-~~~~~~i~~~g~~~~   74 (84)
                      ..++|.|+.+.|++++ .+..+.+.||+.+..
T Consensus       166 ~~~~HgD~~~~Nil~~~~~~~i~iID~e~a~~  197 (239)
T PF01636_consen  166 PVLIHGDLHPGNILVDPSDGRIGIIDFEDAGW  197 (239)
T ss_dssp             EEEE-SS-SGGGEEEESSTTEEEE--GTT-EE
T ss_pred             cEEEEeccccccceeeeccceeEEEecccceE
Confidence            3799999999999998 445558999987654

; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....

>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]

Probab=91.19  E-value=0.9  Score=25.90  Aligned_cols=49  Identities=24%  Similarity=0.337  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHHHHHhc-CCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123           23 KRVSIVKSVAHALSYLHH-DCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus        23 ~~~~~~~~i~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      ....+..+++..+.-+.. .   +++|.|++.-|+++. +..+.++|++=+-..
T Consensus       167 e~~~~~~~~v~~~~~l~~~a---~LVHgDLSEyNiL~~-~~~p~iID~~QaV~~  216 (268)
T COG1718         167 EAEGLYEDVVEYMRRLYKEA---GLVHGDLSEYNILVH-DGEPYIIDVSQAVTI  216 (268)
T ss_pred             hHHHHHHHHHHHHHHHHHhc---CcccccchhhheEEE-CCeEEEEECcccccc
Confidence            344455556666665554 4   899999999999998 777888998755443

>COG3173 Predicted aminoglycoside phosphotransferase [General function prediction only]

Probab=90.96  E-value=0.43  Score=27.89  Aligned_cols=34  Identities=26%  Similarity=0.349  Sum_probs=28.6

Q ss_pred             CCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123           43 TLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus        43 ~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      ...++|.|+.+.|++++......+.||+.+..-+
T Consensus       197 ~~~lvHGD~~~gNlii~~~~~~gVlDwe~~~lGD  230 (321)
T COG3173         197 PPVLVHGDYRPGNLIIDPGRPTGVLDWELATLGD  230 (321)
T ss_pred             CceeeeCCcccCCEEEeCCCeeEEEeccccccCC
Confidence            3478999999999999988889999998876543

>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172

Probab=90.46  E-value=0.45  Score=26.18  Aligned_cols=30  Identities=17%  Similarity=0.186  Sum_probs=24.9

Q ss_pred             CCeEecCCCCCcEEeCCCCcEEEccccccee
Q 040123           44 LSVVHRDISSNNILLDLNLEASVADFGTARL   74 (84)
Q Consensus        44 ~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~   74 (84)
                      ..++|.|+.+.|+++..+. ..+.||+.+..
T Consensus       153 ~~~~HgD~~~~Nii~~~~~-~~iIDwe~a~~  182 (226)
T TIGR02172       153 STCLHGDFQIGNLITSGKG-TYWIDLGDFGY  182 (226)
T ss_pred             CceEecCCCCCcEEEcCCC-cEEEechhcCc
Confidence            3678999999999998766 88999987643

This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.

>cd05153 HomoserineK_II Homoserine Kinase, type II

Probab=89.89  E-value=0.36  Score=27.26  Aligned_cols=29  Identities=34%  Similarity=0.445  Sum_probs=24.8

Q ss_pred             CeEecCCCCCcEEeCCCCcEEEcccccce
Q 040123           45 SVVHRDISSNNILLDLNLEASVADFGTAR   73 (84)
Q Consensus        45 ~~~~~~l~~~~~~~~~~~~~~i~~~g~~~   73 (84)
                      .++|.|+.+.|++++.+....+.||..+.
T Consensus       176 ~l~HgD~~~~Nil~~~~~~~~iIDfe~a~  204 (296)
T cd05153         176 GVIHADLFRDNVLFDGDELSGVIDFYFAC  204 (296)
T ss_pred             cCCccCcCcccEEEeCCceEEEeehhhhc
Confidence            68999999999999887777899987653

Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a PK fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine.

>cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes

Probab=89.50  E-value=0.62  Score=25.35  Aligned_cols=31  Identities=23%  Similarity=0.348  Sum_probs=25.6

Q ss_pred             CCeEecCCCCCcEEeCC-CCcEEEccccccee
Q 040123           44 LSVVHRDISSNNILLDL-NLEASVADFGTARL   74 (84)
Q Consensus        44 ~~~~~~~l~~~~~~~~~-~~~~~i~~~g~~~~   74 (84)
                      ..++|+|+.+.|++++. +..+.+.||-.+..
T Consensus       170 ~~l~H~Dl~~~Nil~~~~~~~~~lIDwe~a~~  201 (235)
T cd05157         170 IVFCHNDLLSGNIIYNEEKNSVKFIDYEYAGY  201 (235)
T ss_pred             EEEEcCCCCcCcEEEeCCCCCEEEEEcccCCc
Confidence            36899999999999987 46789999876543

ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo

>cd05152 MPH2' Macrolide 2'-Phosphotransferase (MPH2')

Probab=89.18  E-value=0.56  Score=26.63  Aligned_cols=31  Identities=26%  Similarity=0.452  Sum_probs=24.8

Q ss_pred             CeEecCCCCCcEEeCCCC-cEEEcccccceec
Q 040123           45 SVVHRDISSNNILLDLNL-EASVADFGTARLL   75 (84)
Q Consensus        45 ~~~~~~l~~~~~~~~~~~-~~~i~~~g~~~~~   75 (84)
                      .++|.|+.+.|++++.+. ...+.||+.+..-
T Consensus       186 ~lvHGD~~~~Nilv~~~~~~~gviDWe~a~iG  217 (276)
T cd05152         186 VLVHGDLHPGHILIDEDARVTGLIDWTEAKVG  217 (276)
T ss_pred             eeEeCCCCCCcEEEeCCCCEEEEECcHhcccC
Confidence            689999999999998733 4679999876543

MPH2' is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). MPH2' catalyzes the transfer of the gamma-phosphoryl group from ATP to the 2'-hydroxyl of macrolide antibiotics such as erythromycin, clarithromycin, and azithromycin, among others. Macrolides penetrate the bacterial cell and bind to ribosomes, where it interrupts protein elongation, leading ultimately to the demise of the bacterium. Phosphorylation of macrolides leads to their inactivation. Based on substrate specificity and amino acid sequence, MPH2' is divided into types I and II, encoded by mphA and mphB genes, respectively. MPH2'I inactivates 14-membered ring macrolides while MPH2'II inactivates both 14- and 16-membered ring macrolides. Enzymatic inactivation of macrolides has been reported

>TIGR00938 thrB_alt homoserine kinase, Neisseria type

Probab=89.04  E-value=0.52  Score=26.93  Aligned_cols=30  Identities=33%  Similarity=0.413  Sum_probs=25.3

Q ss_pred             CCeEecCCCCCcEEeCCCCcEEEcccccce
Q 040123           44 LSVVHRDISSNNILLDLNLEASVADFGTAR   73 (84)
Q Consensus        44 ~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~   73 (84)
                      ..++|.|+...|++++.+....+.||+.+.
T Consensus       187 ~~l~HgD~~~~Nvl~~~~~~~~vIDfd~~~  216 (307)
T TIGR00938       187 RGVIHADLFPDNVLFDGDSVKGVIDFYFAC  216 (307)
T ss_pred             CccCCCCCCcCcEEEECCceEEEeeccccc
Confidence            489999999999999877666899998653

Homoserine kinase is required in the biosynthesis of threonine from aspartate.The member of this family from Pseudomonas aeruginosa was shown by direct assay and complementation to act specifically as a homoserine kinase.

>TIGR02721 ycfN_thiK thiamine kinase

Probab=88.88  E-value=0.58  Score=25.95  Aligned_cols=29  Identities=17%  Similarity=0.239  Sum_probs=24.0

Q ss_pred             CeEecCCCCCcEEeCCCCcEEEccccccee
Q 040123           45 SVVHRDISSNNILLDLNLEASVADFGTARL   74 (84)
Q Consensus        45 ~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~   74 (84)
                      .++|+|+.+.|++++.+. +.+.||..+..
T Consensus       147 ~l~H~Dl~~~Nil~~~~~-~~lIDwE~a~~  175 (256)
T TIGR02721       147 APLHMDVHAYNLVVTPQG-LKLIDWEYASD  175 (256)
T ss_pred             eeecCCCCcCcEEEeCCC-CEEEeccccCc
Confidence            689999999999998755 67999876654

Members of this family are the ycfN gene product of Escherichia coli, now identified as the salvage enzyme thiamine kinase (thiK), and additional proteobacterial homologs taken to be orthologs with equivalent function.

>PRK10271 thiK thiamine kinase; Provisional

Probab=88.82  E-value=0.65  Score=25.05  Aligned_cols=30  Identities=17%  Similarity=0.169  Sum_probs=24.7

Q ss_pred             CeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123           45 SVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus        45 ~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      ...|.|+.+.|++...+. ++++||+.+..-
T Consensus        78 ~p~H~D~~~~N~~~~~~~-~~lIDwe~a~~g  107 (188)
T PRK10271         78 APLHMDVHAGNLVHSASG-LRLIDWEYAGDG  107 (188)
T ss_pred             eeecCCCCCccEEEECCC-EEEEeCCcccCC
Confidence            569999999999887665 889999887543

>PF01633 Choline_kinase: Choline/ethanolamine kinase; InterPro: IPR002573 Choline kinase, (ATP:choline phosphotransferase, 2

Probab=87.92  E-value=0.73  Score=24.80  Aligned_cols=30  Identities=30%  Similarity=0.471  Sum_probs=20.5

Q ss_pred             CeEecCCCCCcEEe-CCCCcEEEccccccee
Q 040123           45 SVVHRDISSNNILL-DLNLEASVADFGTARL   74 (84)
Q Consensus        45 ~~~~~~l~~~~~~~-~~~~~~~i~~~g~~~~   74 (84)
                      .+.|.|+.+.|++. ..+..++++||-.+..
T Consensus       144 v~cHnDl~~~Nil~~~~~~~~~lIDfEya~~  174 (211)
T PF01633_consen  144 VFCHNDLNPGNILINNKDGEVKLIDFEYAGY  174 (211)
T ss_dssp             EEE-S--SGGGEEETSSSSCEEE--GTT-EE
T ss_pred             eEeeccCccccEEeccCCCeEEEecHHHHhh
Confidence            67999999999999 7788999999976653

7.1.32 from EC) belongs to the choline/ethanolamine kinase family. Ethanolamine and choline are major membrane phospholipids, in the form of glycerophosphoethanolamine and glycerophosphocholine. Ethanolamine is also a component of the glycosylphosphatidylinositol (GPI) anchor, which is necessary for cell-surface protein attachment []. The de novo synthesis of these phospholipids begins with the creation of phosphoethanolamine and phosphocholine by ethanolamine and choline kinases in the first step of the CDP-ethanolamine pathway [, ]. There are two putative choline/ethanolamine kinases (C/EKs) in the Trypanosoma brucei genome. Ethanolamine kinase has no choline kinase activity [] and its activity is inhibited by ADP []. Inositol supplementation represses ethanolamine kinase, decreasing the incorporation of ethanolamine into the CDP-ethanolamine pathway and into phosphatidylethanolamine and phosphatidylcholine []. ; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 3C5I_A 2IG7_A 3LQ3_A 3FEG_A 2QG7_E 3FI8_A 1NW1_A 3MES_A 3G15_A 2CKP_B ....

>smart00587 CHK ZnF_C4 abd HLH domain containing kinases domain

Probab=86.21  E-value=1.3  Score=23.80  Aligned_cols=31  Identities=23%  Similarity=0.384  Sum_probs=24.8

Q ss_pred             CeEecCCCCCcEEeCCCC-----cEEEcccccceec
Q 040123           45 SVVHRDISSNNILLDLNL-----EASVADFGTARLL   75 (84)
Q Consensus        45 ~~~~~~l~~~~~~~~~~~-----~~~i~~~g~~~~~   75 (84)
                      .+.|+|+.+.|+++..+.     .+.+.||..+..-
T Consensus       121 vl~HgD~~~~N~~~~~~~~~~~~~~~liDfq~~~~g  156 (196)
T smart00587      121 VLNHGDLWANNIMFKYDDEGKPEDVALIDFQLSHYG  156 (196)
T ss_pred             EEeeCCCCccceeeccCCCCCccceEEEecccCCcC
Confidence            689999999999997543     5788999876553

subfamily of choline kinases

>COG2334 Putative homoserine kinase type II (protein kinase fold) [General function prediction only]

Probab=84.21  E-value=1.6  Score=25.74  Aligned_cols=28  Identities=29%  Similarity=0.623  Sum_probs=23.9

Q ss_pred             eEecCCCCCcEEeCCCCc-EEEcccccce
Q 040123           46 VVHRDISSNNILLDLNLE-ASVADFGTAR   73 (84)
Q Consensus        46 ~~~~~l~~~~~~~~~~~~-~~i~~~g~~~   73 (84)
                      ++|.|+.+.|++++.... ..+.||+-+.
T Consensus       199 iIH~D~~~~NVl~d~~~~~~g~iDFdDa~  227 (331)
T COG2334         199 IIHGDLHPDNVLFDDDTDVSGFIDFDDAG  227 (331)
T ss_pred             eeecCCCccceeEcCCCCeeeEEEccccc
Confidence            899999999999988764 7889987554

>TIGR02906 spore_CotS spore coat protein, CotS family

Probab=84.14  E-value=1.6  Score=24.86  Aligned_cols=28  Identities=36%  Similarity=0.409  Sum_probs=23.1

Q ss_pred             CCeEecCCCCCcEEeCCCCcEEEcccccc
Q 040123           44 LSVVHRDISSNNILLDLNLEASVADFGTA   72 (84)
Q Consensus        44 ~~~~~~~l~~~~~~~~~~~~~~i~~~g~~   72 (84)
                      .+++|+|+...|++++. ..+.+.||..+
T Consensus       187 ~~liHgD~~~~Nil~~~-~~i~lIDfd~~  214 (313)
T TIGR02906       187 RGFCHQDYAYHNILLKD-NEVYVIDFDYC  214 (313)
T ss_pred             CceEcCCCCcccEEEeC-CcEEEEECccc
Confidence            37899999999999976 45778998754

Members of this family include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologs that are more closely related to these two than to the spore coat proteins YutH and YsxE. The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers.

>COG0510 ycfN Thiamine kinase and related kinases [Coenzyme transport and metabolism]

Probab=81.24  E-value=2.4  Score=24.18  Aligned_cols=29  Identities=24%  Similarity=0.265  Sum_probs=25.5

Q ss_pred             CeEecCCCCCcEEeCCCCcEEEcccccce
Q 040123           45 SVVHRDISSNNILLDLNLEASVADFGTAR   73 (84)
Q Consensus        45 ~~~~~~l~~~~~~~~~~~~~~i~~~g~~~   73 (84)
                      .+.|.|+.+.|++......+.++||-.+.
T Consensus       154 v~cH~Dl~~~N~l~t~~~~l~LIDWEyAg  182 (269)
T COG0510         154 VPCHNDLNPGNLLLTDKGGLFLIDWEYAG  182 (269)
T ss_pred             eeecCCCCccceEEcCCCcEEEEecccCC
Confidence            58999999999999998999999986554

>COG5072 ALK1 Serine/threonine kinase of the haspin family [Cell division and chromosome partitioning]

Probab=81.22  E-value=7.7  Score=23.96  Aligned_cols=52  Identities=23%  Similarity=0.369  Sum_probs=35.2

Q ss_pred             CHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEccccccee
Q 040123           20 NWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARL   74 (84)
Q Consensus        20 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~   74 (84)
                      .+.+...++.+... +.+..+. ....-|+++.-.|++++ .+.+.++||.+++.
T Consensus       319 ~~~e~lsff~s~~s-il~~lek-kf~fehrnlt~~niLId-~GnvtLIDfklsRl  370 (488)
T COG5072         319 RSEEELSFFWSCIS-ILDILEK-KFPFEHRNLTLDNILID-EGNVTLIDFKLSRL  370 (488)
T ss_pred             cHHHHHHHHHHHHH-HHhhhhh-cCCcccccccccceeee-cCceEEEEeeeeec
Confidence            34454555444333 3333333 34678999999999999 78899999998874

>PLN02236 choline kinase

Probab=80.35  E-value=2.7  Score=24.74  Aligned_cols=31  Identities=23%  Similarity=0.449  Sum_probs=25.0

Q ss_pred             CCeEecCCCCCcEEeCC-CCcEEEccccccee
Q 040123           44 LSVVHRDISSNNILLDL-NLEASVADFGTARL   74 (84)
Q Consensus        44 ~~~~~~~l~~~~~~~~~-~~~~~i~~~g~~~~   74 (84)
                      ..+.|+|+.+.|++++. +..+.++||..+..
T Consensus       200 ~~~cH~Dl~~~Nil~~~~~~~~~lID~Eya~~  231 (344)
T PLN02236        200 IGFCHNDLQYGNIMIDEETRAITIIDYEYASY  231 (344)
T ss_pred             ceEEeCCCCcCcEEEeCCCCcEEEEeehhccc
Confidence            36899999999999975 45789999876653

>COG4248 Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains [General function prediction only]

Probab=80.27  E-value=8.8  Score=24.22  Aligned_cols=48  Identities=21%  Similarity=0.396  Sum_probs=40.2

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcc
Q 040123           18 ELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVAD   68 (84)
Q Consensus        18 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~   68 (84)
                      ...|..+....+.++.+..-+|..   +....|....+++........+.|
T Consensus       113 ~~~w~fllrvaRnlA~aFA~lH~~---Gh~vGDVn~~~~lVsd~~~V~LVd  160 (637)
T COG4248         113 HCAWDFLLRVARNLASAFATLHEH---GHVVGDVNQNSFLVSDDSKVVLVD  160 (637)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHhc---CCcccccCccceeeecCceEEEEc
Confidence            356778888899999999999988   888999999999998777665554

>PLN02421 phosphotransferase, alcohol group as acceptor/kinase

Probab=80.20  E-value=3.2  Score=24.27  Aligned_cols=30  Identities=23%  Similarity=0.329  Sum_probs=24.8

Q ss_pred             CeEecCCCCCcEEeCC-CCcEEEccccccee
Q 040123           45 SVVHRDISSNNILLDL-NLEASVADFGTARL   74 (84)
Q Consensus        45 ~~~~~~l~~~~~~~~~-~~~~~i~~~g~~~~   74 (84)
                      .+.|+|+.+.|+++.. +..+.++||..+..
T Consensus       183 v~CHnDl~~~NiL~~~~~~~l~lID~EYag~  213 (330)
T PLN02421        183 VFAHNDLLSGNLMLNEDEGKLYFIDFEYGSY  213 (330)
T ss_pred             EEEECCCCcccEEEeCCCCcEEEEcccccCC
Confidence            5799999999999964 46799999977654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	84
3uim_A	326	Structural Basis For The Impact Of Phosphorylation		1e-06
3tl8_A	349	The Avrptob-Bak1 Complex Reveals Two Structurally S		1e-06
3s95_A	310	Crystal Structure Of The Human Limk1 Kinase Domain		4e-05

>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation Length = 326

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 1   MERGSLFCVLRDDDEAIE-LNWTKRVSIVKSVAHALSYLHHDCTLSVVHRXXXXXXXXXX 59
           M  GS+   LR+  E+   L+W KR  I    A  L+YLH  C   ++HR          
Sbjct: 109 MANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLD 168
Query: 60  XXXEASVADFGTARLL 75
              EA V DFG A+L+
Sbjct: 169 EEFEAVVGDFGLAKLM 184

>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector Length = 349

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 1   MERGSLFCVLRDDDEA-IELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRXXXXXXXXXX 59
           M  GS+   LR+  E+   L+W KR  I    A  L+YLH  C   ++HR          
Sbjct: 117 MANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLD 176
Query: 60  XXXEASVADFGTARLL 75
              EA V DFG A+L+
Sbjct: 177 EEFEAVVGDFGLAKLM 192

>pdb|3S95|A Chain A, Crystal Structure Of The Human Limk1 Kinase Domain In Complex With Staurosporine Length = 310

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 4   GSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRXXXXXXXXXXXXXE 63
           G+L  +++  D   +  W++RVS  K +A  ++YLH   +++++HR              
Sbjct: 92  GTLRGIIKSMDS--QYPWSQRVSFAKDIASGMAYLH---SMNIIHRDLNSHNCLVRENKN 146
Query: 64  ASVADFGTARLL 75
             VADFG ARL+
Sbjct: 147 VVVADFGLARLM 158

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	84
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	1e-24
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	1e-22
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	3e-22
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	5e-21
3soc_A	322	Activin receptor type-2A; structural genomics cons	2e-20
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	3e-20
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	1e-19
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	2e-19
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	2e-19
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	1e-18
3q4u_A	301	Activin receptor type-1; structural genomics conso	1e-18
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	2e-18
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	2e-18
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	4e-18
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	4e-18
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	2e-17
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	2e-17
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	1e-16
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	1e-12
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	1e-11
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	2e-11
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	2e-11
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	2e-11
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	3e-11
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	4e-11
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	4e-11
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	6e-11
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	6e-11
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	7e-11
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	7e-11
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	7e-11
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	9e-11
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	1e-10
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	1e-10
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	1e-10
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	1e-10
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	2e-10
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	3e-10
2dyl_A	318	Dual specificity mitogen-activated protein kinase	3e-10
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	3e-10
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	4e-10
3aln_A	327	Dual specificity mitogen-activated protein kinase;	4e-10
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	4e-10
3an0_A	340	Dual specificity mitogen-activated protein kinase;	5e-10
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	6e-10
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	6e-10
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	7e-10
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	8e-10
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	8e-10
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	8e-10
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	1e-09
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	1e-09
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	1e-09
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	1e-09
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	1e-09
3fme_A	290	Dual specificity mitogen-activated protein kinase;	1e-09
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	1e-09
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	1e-09
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	2e-09
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	2e-09
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	2e-09
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	2e-09
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	2e-09
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	2e-09
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	2e-09
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	2e-09
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	2e-09
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	3e-09
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	3e-09
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	3e-09
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	3e-09
3pls_A	298	Macrophage-stimulating protein receptor; protein k	3e-09
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	3e-09
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	4e-09
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	4e-09
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	4e-09
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	4e-09
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	4e-09
3ork_A	311	Serine/threonine protein kinase; structural genomi	5e-09
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	5e-09
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	6e-09
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	7e-09
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	9e-09
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	1e-08
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	1e-08
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	1e-08
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	1e-08
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	2e-08
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	2e-08
2a19_B	284	Interferon-induced, double-stranded RNA-activated	2e-08
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	2e-08
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	2e-08
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	2e-08
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	3e-08
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	4e-08
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	7e-08
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	9e-08
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	9e-08
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	1e-07
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	1e-07
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	1e-07
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	1e-07
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	2e-07
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	2e-07
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	2e-07
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	3e-07
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	3e-07
4aoj_A	329	High affinity nerve growth factor receptor; transf	3e-07
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	3e-07
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	4e-07
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	4e-07
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	4e-07
1uu3_A	310	HPDK1, 3-phosphoinositide dependent protein kinase	4e-07
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	6e-07
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	7e-07
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	7e-07
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	7e-07
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	7e-07
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	8e-07
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	8e-07
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	9e-07
3zzw_A	289	Tyrosine-protein kinase transmembrane receptor RO;	9e-07
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	9e-07
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	9e-07
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	1e-06
3v5q_A	297	NT-3 growth factor receptor; kinase domain, kinase	1e-06
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	1e-06
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	1e-06
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	1e-06
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	1e-06
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	1e-06
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	1e-06
3o0g_A	292	Cell division protein kinase 5; kinase activator c	1e-06
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	2e-06
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	2e-06
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	2e-06
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	2e-06
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	2e-06
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	2e-06
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	2e-06
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	2e-06
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	2e-06
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	2e-06
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	2e-06
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	2e-06
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	2e-06
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	2e-06
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	2e-06
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	2e-06
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	2e-06
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	3e-06
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	3e-06
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	3e-06
3niz_A	311	Rhodanese family protein; structural genomics, str	3e-06
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	3e-06
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	3e-06
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	3e-06
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	3e-06
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	3e-06
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	4e-06
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	4e-06
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	4e-06
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	4e-06
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	4e-06
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	4e-06
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	4e-06
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	5e-06
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	5e-06
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	5e-06
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	5e-06
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	6e-06
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	6e-06
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	6e-06
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	6e-06
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	8e-06
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	8e-06
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	8e-06
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	9e-06
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	9e-06
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	1e-05
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	1e-05
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	1e-05
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	1e-05
3rp9_A	458	Mitogen-activated protein kinase; structural genom	1e-05
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	1e-05
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	1e-05
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	1e-05
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	2e-05
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	2e-05
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	3e-05
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	3e-05
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	3e-05
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	3e-05
3uqc_A	286	Probable conserved transmembrane protein; structur	3e-05
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	4e-05
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	4e-05
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	5e-05
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	5e-05
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	6e-05
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	6e-05
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	7e-05
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	8e-05
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	8e-05
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	1e-04
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	1e-04
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	1e-04
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	1e-04
3g51_A	325	Ribosomal protein S6 kinase alpha-3; N-terminal ki	1e-04
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	2e-04
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	2e-04
3pvu_A	695	Beta-adrenergic receptor kinase 1; transferase, se	2e-04
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	2e-04
3bhy_A	283	Death-associated protein kinase 3; death associate	2e-04
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	2e-04
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	2e-04
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	2e-04
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	3e-04
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	3e-04
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	3e-04
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	3e-04
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	4e-04
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	4e-04
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	4e-04
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	4e-04

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score = 93.0 bits (232), Expect = 1e-24
 Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 1/81 (1%)

Query: 1   MERGSL-FCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLD 59
           M  GS+  C+    +    L+W KR  I    A  L+YLH  C   ++HRD+ + NILLD
Sbjct: 109 MANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLD 168

Query: 60  LNLEASVADFGTARLLHVDSS 80
              EA V DFG A+L+    +
Sbjct: 169 EEFEAVVGDFGLAKLMDYKDT 189

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score = 87.4 bits (217), Expect = 1e-22
 Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 1/83 (1%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           + RGSL+ +L       +L+  +R+S+   VA  ++YLH+     +VHR++ S N+L+D 
Sbjct: 116 LSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHN-RNPPIVHRNLKSPNLLVDK 174

Query: 61  NLEASVADFGTARLLHVDSSNRT 83
                V DFG +RL      +  
Sbjct: 175 KYTVKVCDFGLSRLKASTFLSSK 197

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score = 86.2 bits (214), Expect = 3e-22
 Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 1/84 (1%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
            E GSL+ VL   +          +S     +  ++YLH     +++HRD+   N+LL  
Sbjct: 81  AEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVA 140

Query: 61  NLEAS-VADFGTARLLHVDSSNRT 83
                 + DFGTA  +    +N  
Sbjct: 141 GGTVLKICDFGTACDIQTHMTNNK 164

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score = 83.0 bits (206), Expect = 5e-21
 Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 3/79 (3%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           M  GSL   L   D    L+W  R  I +  A+ +++LH +     +HRDI S NILLD 
Sbjct: 112 MPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHENH---HIHRDIKSANILLDE 168

Query: 61  NLEASVADFGTARLLHVDS 79
              A ++DFG AR     +
Sbjct: 169 AFTAKISDFGLARASEKFA 187

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score = 81.7 bits (202), Expect = 2e-20
 Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 11/87 (12%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHD-------CTLSVVHRDISS 53
            E+GSL   L+ +     ++W +   I +++A  L+YLH D          ++ HRDI S
Sbjct: 104 HEKGSLSDFLKAN----VVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKS 159

Query: 54  NNILLDLNLEASVADFGTARLLHVDSS 80
            N+LL  NL A +ADFG A       S
Sbjct: 160 KNVLLKNNLTACIADFGLALKFEAGKS 186

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score = 80.8 bits (200), Expect = 3e-20
 Identities = 27/83 (32%), Positives = 51/83 (61%), Gaps = 5/83 (6%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           ++ G+L  +++  D   +  W++RVS  K +A  ++YLH   +++++HRD++S+N L+  
Sbjct: 89  IKGGTLRGIIKSMDS--QYPWSQRVSFAKDIASGMAYLH---SMNIIHRDLNSHNCLVRE 143

Query: 61  NLEASVADFGTARLLHVDSSNRT 83
           N    VADFG ARL+  + +   
Sbjct: 144 NKNVVVADFGLARLMVDEKTQPE 166

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score = 78.4 bits (194), Expect = 1e-19
 Identities = 13/76 (17%), Positives = 34/76 (44%), Gaps = 2/76 (2%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           M  GSL+ VL +      ++ ++ V     +A  +++LH      +    ++S ++++D 
Sbjct: 91  MPYGSLYNVLHEG-TNFVVDQSQAVKFALDMARGMAFLHT-LEPLIPRHALNSRSVMIDE 148

Query: 61  NLEASVADFGTARLLH 76
           ++ A ++         
Sbjct: 149 DMTARISMADVKFSFQ 164

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score = 78.5 bits (194), Expect = 2e-19
 Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 8/88 (9%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           +  G L+  L D  +A  + W+ ++ ++  +A  + Y+ +     +VHRD+ S NI L  
Sbjct: 103 VPCGDLYHRLLD--KAHPIKWSVKLRLMLDIALGIEYMQN-QNPPIVHRDLRSPNIFLQS 159

Query: 61  NLEAS-----VADFGTARLLHVDSSNRT 83
             E +     VADFG ++      S   
Sbjct: 160 LDENAPVCAKVADFGLSQQSVHSVSGLL 187

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score = 78.4 bits (194), Expect = 2e-19
 Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)

Query: 1   MERGSLFCVLRDDDEAIE-LNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLD 59
           ME G+L   L   D     ++W +R+ I    A  L YLH      ++HRD+ S NILLD
Sbjct: 117 MENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTRA---IIHRDVKSINILLD 173

Query: 60  LNLEASVADFGTARL 74
            N    + DFG ++ 
Sbjct: 174 ENFVPKITDFGISKK 188

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score = 76.2 bits (188), Expect = 1e-18
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 12/88 (13%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
              G L  VL        +     V+    +A  ++YLH +  + ++HRD+ S+NIL+  
Sbjct: 88  ARGGPLNRVLSGK----RIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQ 143

Query: 61  NLEAS--------VADFGTARLLHVDSS 80
            +E          + DFG AR  H  + 
Sbjct: 144 KVENGDLSNKILKITDFGLAREWHRTTK 171

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score = 76.2 bits (188), Expect = 1e-18
 Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 9/85 (10%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHD-----CTLSVVHRDISSNN 55
            E GSL+  L+       L+    + IV S+A  L++LH +        ++ HRD+ S N
Sbjct: 88  HEMGSLYDYLQLT----TLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKN 143

Query: 56  ILLDLNLEASVADFGTARLLHVDSS 80
           IL+  N +  +AD G A +    ++
Sbjct: 144 ILVKKNGQCCIADLGLAVMHSQSTN 168

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score = 76.3 bits (188), Expect = 2e-18
 Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 9/89 (10%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLH-----HDCTLSVVHRDISSNN 55
            E GSL+  L+       L+    + +  S    L +LH          ++ HRD+ S N
Sbjct: 117 HENGSLYDYLKST----TLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKN 172

Query: 56  ILLDLNLEASVADFGTARLLHVDSSNRTL 84
           IL+  N    +AD G A     D++   +
Sbjct: 173 ILVKKNGTCCIADLGLAVKFISDTNEVDI 201

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score = 75.0 bits (185), Expect = 4e-18
 Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 5/84 (5%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
            E  SL+  L   +   +    K + I +  A  + YLH     S++HRD+ SNNI L  
Sbjct: 101 CEGSSLYHHLHASET--KFEMKKLIDIARQTARGMDYLH---AKSIIHRDLKSNNIFLHE 155

Query: 61  NLEASVADFGTARLLHVDSSNRTL 84
           +    + DFG A      S +   
Sbjct: 156 DNTVKIGDFGLATEKSRWSGSHQF 179

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score = 73.3 bits (180), Expect = 2e-17
 Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 10/89 (11%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHD------CTLSVVHRDISSN 54
              GSL   L         +W     +  SV   L+YLH +         ++ HRD++S 
Sbjct: 94  YPNGSLXKYLSLH----TSDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSR 149

Query: 55  NILLDLNLEASVADFGTARLLHVDSSNRT 83
           N+L+  +    ++DFG +  L  +   R 
Sbjct: 150 NVLVKNDGTCVISDFGLSMRLTGNRLVRP 178

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score = 73.7 bits (181), Expect = 2e-17
 Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 9/89 (10%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHD-----CTLSVVHRDISSNN 55
            E GSLF  L        +     + +  S A  L++LH +        ++ HRD+ S N
Sbjct: 122 HEHGSLFDYLNRY----TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKN 177

Query: 56  ILLDLNLEASVADFGTARLLHVDSSNRTL 84
           IL+  N    +AD G A      +    +
Sbjct: 178 ILVKKNGTCCIADLGLAVRHDSATDTIDI 206

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score = 71.2 bits (175), Expect = 1e-16
 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 6/82 (7%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
            +  +L+ V+RD    I L+  K   I + +   + YLH      ++H+D+ S N+  D 
Sbjct: 111 CKGRTLYSVVRDAK--IVLDVNKTRQIAQEIVKGMGYLH---AKGILHKDLKSKNVFYD- 164

Query: 61  NLEASVADFGTARLLHVDSSNR 82
           N +  + DFG   +  V  + R
Sbjct: 165 NGKVVITDFGLFSISGVLQAGR 186

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 60.0 bits (146), Expect = 1e-12
 Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 5/79 (6%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           ++ G     LR +     L     + +V   A  + YL    +   +HRD+++ N L+  
Sbjct: 194 VQGGDFLTFLRTEGA--RLRVKTLLQMVGDAAAGMEYLE---SKCCIHRDLAARNCLVTE 248

Query: 61  NLEASVADFGTARLLHVDS 79
                ++DFG +R      
Sbjct: 249 KNVLKISDFGMSREEADGV 267

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373

 Score = 57.4 bits (139), Expect = 1e-11
 Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 5/79 (6%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           ME GSL   LR  D   +    + V +++ +A  + YL     +  VHRD+++ NIL++ 
Sbjct: 128 MENGSLDSFLRKHDA--QFTVIQLVGMLRGIASGMKYLS---DMGYVHRDLAARNILINS 182

Query: 61  NLEASVADFGTARLLHVDS 79
           NL   V+DFG  R+L  D 
Sbjct: 183 NLVCKVSDFGLGRVLEDDP 201

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325

 Score = 56.9 bits (138), Expect = 2e-11
 Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 5/79 (6%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           ME GSL   LR  D   +    + V +++ V   + YL     L  VHRD+++ N+L+D 
Sbjct: 132 MENGSLDTFLRTHDG--QFTIMQLVGMLRGVGAGMRYLS---DLGYVHRDLAARNVLVDS 186

Query: 61  NLEASVADFGTARLLHVDS 79
           NL   V+DFG +R+L  D 
Sbjct: 187 NLVCKVSDFGLSRVLEDDP 205

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287

 Score = 56.9 bits (138), Expect = 2e-11
 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 5/80 (6%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
              G L   L    E  E+  +    ++  V+  + YL      + VHRD+++ N+LL  
Sbjct: 91  AGGGPLHKFLVGKRE--EIPVSNVAELLHQVSMGMKYL---EEKNFVHRDLAARNVLLVN 145

Query: 61  NLEASVADFGTARLLHVDSS 80
              A ++DFG ++ L  D S
Sbjct: 146 RHYAKISDFGLSKALGADDS 165

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327

 Score = 56.5 bits (137), Expect = 2e-11
 Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 5/83 (6%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           M  G L   +R+  + I       ++    +A  ++YL       +VHRD+++ N+L+  
Sbjct: 98  MPFGCLLDYVREHKDNIGSQ--YLLNWCVQIAKGMNYLE---DRRLVHRDLAARNVLVKT 152

Query: 61  NLEASVADFGTARLLHVDSSNRT 83
                + DFG A+LL  +     
Sbjct: 153 PQHVKITDFGLAKLLGAEEKEYH 175

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 56.5 bits (136), Expect = 3e-11
 Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 5/80 (6%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
              G L   L    E  E+  +    ++  V+  + YL      + VHR++++ N+LL  
Sbjct: 417 AGGGPLHKFLVGKRE--EIPVSNVAELLHQVSMGMKYL---EEKNFVHRNLAARNVLLVN 471

Query: 61  NLEASVADFGTARLLHVDSS 80
              A ++DFG ++ L  D S
Sbjct: 472 RHYAKISDFGLSKALGADDS 491

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333

 Score = 55.8 bits (135), Expect = 4e-11
 Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 5/80 (6%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           ME G+L   LR+ D   E +  + V +++ +A  + YL     ++ VHRD+++ NIL++ 
Sbjct: 128 MENGALDKFLREKDG--EFSVLQLVGMLRGIAAGMKYLA---NMNYVHRDLAARNILVNS 182

Query: 61  NLEASVADFGTARLLHVDSS 80
           NL   V+DFG +R+L  D  
Sbjct: 183 NLVCKVSDFGLSRVLEDDPE 202

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267

 Score = 55.3 bits (134), Expect = 4e-11
 Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 5/78 (6%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           ME G L   LR             + +   V   ++YL       V+HRD+++ N L+  
Sbjct: 85  MEHGCLSDYLRTQRG--LFAAETLLGMCLDVCEGMAYL---EEACVIHRDLAARNCLVGE 139

Query: 61  NLEASVADFGTARLLHVD 78
           N    V+DFG  R +  D
Sbjct: 140 NQVIKVSDFGMTRFVLDD 157

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279

 Score = 55.3 bits (134), Expect = 6e-11
 Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 4/78 (5%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           ME GSL   L+      +L   K + +   +A  ++++      + +HRD+ + NIL+  
Sbjct: 89  MENGSLVDFLKTPSGI-KLTINKLLDMAAQIAEGMAFIE---ERNYIHRDLRAANILVSD 144

Query: 61  NLEASVADFGTARLLHVD 78
            L   +ADFG ARL+  +
Sbjct: 145 TLSCKIADFGLARLIEDN 162

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283

 Score = 55.3 bits (134), Expect = 6e-11
 Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 5/78 (6%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           M  G L   LR+          + + + K V  A+ YL    +   +HRD+++ N L++ 
Sbjct: 101 MANGCLLNYLREMRH--RFQTQQLLEMCKDVCEAMEYLE---SKQFLHRDLAARNCLVND 155

Query: 61  NLEASVADFGTARLLHVD 78
                V+DFG +R +  D
Sbjct: 156 QGVVKVSDFGLSRYVLDD 173

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 55.2 bits (133), Expect = 7e-11
 Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 4/78 (5%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           M  G+L   LR+ +   E++    + +   ++ A+ YL      + +HR++++ N L+  
Sbjct: 298 MTYGNLLDYLRECNRQ-EVSAVVLLYMATQISSAMEYLEK---KNFIHRNLAARNCLVGE 353

Query: 61  NLEASVADFGTARLLHVD 78
           N    VADFG +RL+  D
Sbjct: 354 NHLVKVADFGLSRLMTGD 371

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268

 Score = 54.9 bits (133), Expect = 7e-11
 Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 5/78 (6%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           +  G L   LR   +   L  ++ + +   V   +++L    +   +HRD+++ N L+D 
Sbjct: 85  ISNGCLLNYLRSHGK--GLEPSQLLEMCYDVCEGMAFLE---SHQFIHRDLAARNCLVDR 139

Query: 61  NLEASVADFGTARLLHVD 78
           +L   V+DFG  R +  D
Sbjct: 140 DLCVKVSDFGMTRYVLDD 157

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 55.3 bits (133), Expect = 7e-11
 Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 4/78 (5%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           M +GSL   L+ +     L   + V +   +A  ++Y+     ++ VHRD+ + NIL+  
Sbjct: 343 MSKGSLLDFLKGETGK-YLRLPQLVDMAAQIASGMAYVER---MNYVHRDLRAANILVGE 398

Query: 61  NLEASVADFGTARLLHVD 78
           NL   VADFG ARL+  +
Sbjct: 399 NLVCKVADFGLARLIEDN 416

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327

 Score = 54.6 bits (132), Expect = 9e-11
 Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 5/83 (6%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           M  G L   +R+  +   +     ++    +A  ++YL       +VHRD+++ N+L+  
Sbjct: 98  MPFGCLLDYVREHKD--NIGSQYLLNWCVQIAKGMNYLE---DRRLVHRDLAARNVLVKT 152

Query: 61  NLEASVADFGTARLLHVDSSNRT 83
                + DFG A+LL  +     
Sbjct: 153 PQHVKITDFGLAKLLGAEEKEYH 175

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 54.3 bits (131), Expect = 1e-10
 Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 5/81 (6%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           M  G+L   L+       +      S  + +   L +LH   T  ++HRD+  +NI +  
Sbjct: 111 MTSGTLKTYLKRFKV---MKIKVLRSWCRQILKGLQFLH-TRTPPIIHRDLKCDNIFITG 166

Query: 61  NL-EASVADFGTARLLHVDSS 80
                 + D G A L     +
Sbjct: 167 PTGSVKIGDLGLATLKRASFA 187

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288

 Score = 54.2 bits (131), Expect = 1e-10
 Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 4/78 (5%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           M  G+L   LR+ +   E++    + +   ++ A+ YL      + +HRD+++ N L+  
Sbjct: 91  MTYGNLLDYLRECNRQ-EVSAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLVGE 146

Query: 61  NLEASVADFGTARLLHVD 78
           N    VADFG +RL+  D
Sbjct: 147 NHLVKVADFGLSRLMTGD 164

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 54.4 bits (131), Expect = 1e-10
 Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 4/78 (5%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           M +GSL   L+ +     L   + V +   +A  ++Y+     ++ VHRD+ + NIL+  
Sbjct: 260 MSKGSLLDFLKGETGK-YLRLPQLVDMAAQIASGMAYVER---MNYVHRDLRAANILVGE 315

Query: 61  NLEASVADFGTARLLHVD 78
           NL   VADFG ARL+  +
Sbjct: 316 NLVCKVADFGLARLIEDN 333

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 54.3 bits (131), Expect = 1e-10
 Identities = 21/78 (26%), Positives = 42/78 (53%), Gaps = 4/78 (5%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           M +GSL   L+ D+ + +    K +     +A  ++++      + +HRD+ + NIL+  
Sbjct: 264 MAKGSLLDFLKSDEGS-KQPLPKLIDFSAQIAEGMAFIEQ---RNYIHRDLRAANILVSA 319

Query: 61  NLEASVADFGTARLLHVD 78
           +L   +ADFG AR++  +
Sbjct: 320 SLVCKIADFGLARVIEDN 337

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291

 Score = 53.8 bits (130), Expect = 2e-10
 Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 6/80 (7%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
            E G L   L+ +     +     + +V  V+  + YL      + VHRD+++ N+LL  
Sbjct: 99  AELGPLNKYLQQNRH---VKDKNIIELVHQVSMGMKYLE---ESNFVHRDLAARNVLLVT 152

Query: 61  NLEASVADFGTARLLHVDSS 80
              A ++DFG ++ L  D +
Sbjct: 153 QHYAKISDFGLSKALRADEN 172

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302

 Score = 53.5 bits (129), Expect = 3e-10
 Identities = 17/80 (21%), Positives = 37/80 (46%), Gaps = 5/80 (6%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           +  GSL   L  +    ++N  +++     +   + YL    +   VHRD+++ N+L++ 
Sbjct: 107 LPSGSLKEYLPKNKN--KINLKQQLKYAVQICKGMDYLG---SRQYVHRDLAARNVLVES 161

Query: 61  NLEASVADFGTARLLHVDSS 80
             +  + DFG  + +  D  
Sbjct: 162 EHQVKIGDFGLTKAIETDKE 181

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} Length = 318

 Score = 53.5 bits (129), Expect = 3e-10
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 27  IVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSSNRT 83
           +  ++  AL YL       V+HRD+  +NILLD   +  + DFG +  L VD   + 
Sbjct: 129 MTVAIVKALYYLKEK--HGVIHRDVKPSNILLDERGQIKLCDFGISGRL-VDDKAKD 182

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325

 Score = 53.1 bits (128), Expect = 3e-10
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 5/80 (6%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           +  GSL   +R    A+       ++    +A  + YL       +VHR++++ N+LL  
Sbjct: 96  LPLGSLLDHVRQHRGALGPQ--LLLNWGVQIAKGMYYLE---EHGMVHRNLAARNVLLKS 150

Query: 61  NLEASVADFGTARLLHVDSS 80
             +  VADFG A LL  D  
Sbjct: 151 PSQVQVADFGVADLLPPDDK 170

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 53.1 bits (128), Expect = 4e-10
 Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 3/82 (3%)

Query: 2   ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLN 61
            + +L   +       E   +  + I   +A A+ +LH   +  ++HRD+  +NI   ++
Sbjct: 98  RKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLH---SKGLMHRDLKPSNIFFTMD 154

Query: 62  LEASVADFGTARLLHVDSSNRT 83
               V DFG    +  D   +T
Sbjct: 155 DVVKVGDFGLVTAMDQDEEEQT 176

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327

 Score = 53.1 bits (128), Expect = 4e-10
 Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 27  IVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSSNRT 83
           I  +   AL++L  +  L ++HRDI  +NILLD +    + DFG +  L VDS  +T
Sbjct: 130 ITLATVKALNHLKEN--LKIIHRDIKPSNILLDRSGNIKLCDFGISGQL-VDSIAKT 183

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score = 52.8 bits (127), Expect = 4e-10
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 26  SIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLN-LEASVADFGTARLLHVDSSNRTL 84
             +      L YLH      ++H D+ ++N+LL  +   A++ DFG A  L  D   ++L
Sbjct: 154 YYLGQALEGLEYLHTRR---ILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLGKSL 210

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291

 Score = 52.6 bits (127), Expect = 6e-10
 Identities = 21/80 (26%), Positives = 30/80 (37%), Gaps = 5/80 (6%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
              GSL   LR       L           VA  + YL    +   +HRD+++ N+LL  
Sbjct: 102 APLGSLLDRLRKHQGHFLLG--TLSRYAVQVAEGMGYLE---SKRFIHRDLAARNLLLAT 156

Query: 61  NLEASVADFGTARLLHVDSS 80
                + DFG  R L  +  
Sbjct: 157 RDLVKIGDFGLMRALPQNDD 176

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281

 Score = 52.6 bits (127), Expect = 6e-10
 Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 5/78 (6%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
              G L   L+    +++L     +     ++ AL+YL    +   VHRDI++ N+L+  
Sbjct: 97  CTLGELRSFLQVRKYSLDLA--SLILYAYQLSTALAYLE---SKRFVHRDIAARNVLVSS 151

Query: 61  NLEASVADFGTARLLHVD 78
           N    + DFG +R +   
Sbjct: 152 NDCVKLGDFGLSRYMEDS 169

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389

 Score = 52.6 bits (126), Expect = 7e-10
 Identities = 12/57 (21%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 27  IVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSSNRT 83
           I++ V  AL Y+HH      VHR + +++IL+ ++ +  ++   +   +      + 
Sbjct: 133 ILQGVLKALDYIHHM---GYVHRSVKASHILISVDGKVYLSGLRSNLSMISHGQRQR 186

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score = 52.3 bits (126), Expect = 8e-10
 Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 19/91 (20%)

Query: 1   ME---RGSLFCVLR-----DDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDIS 52
           +E   R SL  + +      + EA       R   ++ +     YLH +    V+HRD+ 
Sbjct: 120 LELCRRRSLLELHKRRKALTEPEA-------R-YYLRQIVLGCQYLHRNR---VIHRDLK 168

Query: 53  SNNILLDLNLEASVADFGTARLLHVDSSNRT 83
             N+ L+ +LE  + DFG A  +  D   + 
Sbjct: 169 LGNLFLNEDLEVKIGDFGLATKVEYDGERKK 199

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326

 Score = 52.4 bits (126), Expect = 8e-10
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 27  IVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL 75
           I + +   LS+LH      V+HRDI   N+LL  N E  + DFG +  L
Sbjct: 134 ICREILRGLSHLHQH---KVIHRDIKGQNVLLTENAEVKLVDFGVSAQL 179

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 52.4 bits (125), Expect = 8e-10
 Identities = 8/79 (10%), Positives = 19/79 (24%), Gaps = 9/79 (11%)

Query: 1   MER--GSLFCVLRDDDEAIE----LNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSN 54
           M      L  +    D                +   +    + L       +VH   + +
Sbjct: 167 MPAASVDLELLFSTLDFVYVFRGDEGILALHILTAQLIRLAANLQS---KGLVHGHFTPD 223

Query: 55  NILLDLNLEASVADFGTAR 73
           N+ +  +    + D     
Sbjct: 224 NLFIMPDGRLMLGDVSALW 242

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score = 51.9 bits (125), Expect = 1e-09
 Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 7/87 (8%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           +  GSL  +LR     ++ N        K +   L YLH +    +VHRDI  +N+L++ 
Sbjct: 101 VPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDNQ---IVHRDIKGDNVLIN- 156

Query: 61  NLEASV--ADFGTA-RLLHVDSSNRTL 84
                +  +DFGT+ RL  ++    T 
Sbjct: 157 TYSGVLKISDFGTSKRLAGINPCTETF 183

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348

 Score = 51.6 bits (124), Expect = 1e-09
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 27  IVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTA 72
           +       L+YLH     +++HRD+ + NILL       + DFG+A
Sbjct: 159 VTHGALQGLAYLHSH---NMIHRDVKAGNILLSEPGLVKLGDFGSA 201

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360

 Score = 51.8 bits (124), Expect = 1e-09
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 27  IVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSSNRT 83
           +  +V   L+YL       ++HRD+  +NIL++   E  + DFG +  L +DS   +
Sbjct: 136 VSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVSGQL-IDSMANS 189

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281

 Score = 51.4 bits (124), Expect = 1e-09
 Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 5/75 (6%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
              G L   L  +  ++++     V     +  A++YL    +++ VHRDI+  NIL+  
Sbjct: 94  YPYGELGHYLERNKNSLKV--LTLVLYSLQICKAMAYLE---SINCVHRDIAVRNILVAS 148

Query: 61  NLEASVADFGTARLL 75
                + DFG +R +
Sbjct: 149 PECVKLGDFGLSRYI 163

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278

 Score = 51.4 bits (124), Expect = 1e-09
 Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 4/81 (4%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           M +GSL   LR    +  L     +     V  A+ YL      + VHRD+++ N+L+  
Sbjct: 97  MAKGSLVDYLRSRGRS-VLGGDCLLKFSLDVCEAMEYLE---GNNFVHRDLAARNVLVSE 152

Query: 61  NLEASVADFGTARLLHVDSSN 81
           +  A V+DFG  +        
Sbjct: 153 DNVAKVSDFGLTKEASSTQDT 173

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A Length = 290

 Score = 51.5 bits (124), Expect = 1e-09
 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 3/57 (5%)

Query: 27  IVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSSNRT 83
           I  S+  AL +LH    LSV+HRD+  +N+L++   +  + DFG +  L VD   + 
Sbjct: 114 IAVSIVKALEHLHSK--LSVIHRDVKPSNVLINALGQVKMCDFGISGYL-VDDVAKD 167

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 51.6 bits (124), Expect = 1e-09
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 6/82 (7%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYL-HHDCTLSVVHRDISSNNILLD 59
           M +GSL   LR    +  L     +     V  A+ YL  ++     VHRD+++ N+L+ 
Sbjct: 269 MAKGSLVDYLRSRGRS-VLGGDCLLKFSLDVCEAMEYLEGNNF----VHRDLAARNVLVS 323

Query: 60  LNLEASVADFGTARLLHVDSSN 81
            +  A V+DFG  +        
Sbjct: 324 EDNVAKVSDFGLTKEASSTQDT 345

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score = 51.5 bits (124), Expect = 1e-09
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 27  IVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTA 72
           + +    AL +LH   +  V+HRDI S+NILL ++    + DFG  
Sbjct: 121 VCRECLQALEFLH---SNQVIHRDIKSDNILLGMDGSVKLTDFGFC 163

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303

 Score = 51.2 bits (123), Expect = 2e-09
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 3/45 (6%)

Query: 26  SIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFG 70
           +I++ V   L YLH +     +HRD+ + NILL  +    +ADFG
Sbjct: 125 TILREVLEGLEYLHKN---GQIHRDVKAGNILLGEDGSVQIADFG 166

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score = 51.4 bits (124), Expect = 2e-09
 Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 19/91 (20%)

Query: 1   ME---RGSLFCVLR-----DDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDIS 52
           +E   R SL  + +      + EA       R   ++ +     YLH      V+HRD+ 
Sbjct: 94  LELCRRRSLLELHKRRKALTEPEA-------R-YYLRQIVLGCQYLHR---NRVIHRDLK 142

Query: 53  SNNILLDLNLEASVADFGTARLLHVDSSNRT 83
             N+ L+ +LE  + DFG A  +  D   + 
Sbjct: 143 LGNLFLNEDLEVKIGDFGLATKVEYDGERKK 173

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score = 51.2 bits (123), Expect = 2e-09
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 3/46 (6%)

Query: 27  IVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTA 72
           I++ +   L YLH +     +HRDI + N+LL  + E  +ADFG A
Sbjct: 124 ILREILKGLDYLHSE---KKIHRDIKAANVLLSEHGEVKLADFGVA 166

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score = 51.2 bits (123), Expect = 2e-09
 Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 3/44 (6%)

Query: 27  IVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFG 70
           + ++V  AL+YLH      V+HRDI S++ILL L+    ++DFG
Sbjct: 146 VCEAVLQALAYLH---AQGVIHRDIKSDSILLTLDGRVKLSDFG 186

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314

 Score = 51.2 bits (123), Expect = 2e-09
 Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 27  IVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTA 72
           I++S    L YLH       +HRDI + NILL+    A +ADFG A
Sbjct: 130 ILQSTLKGLEYLHFM---RKIHRDIKAGNILLNTEGHAKLADFGVA 172

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score = 51.2 bits (122), Expect = 2e-09
 Identities = 21/90 (23%), Positives = 34/90 (37%), Gaps = 9/90 (10%)

Query: 1   ME---RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNIL 57
           ME    G L   L   +    L      +++  ++ AL YLH      ++HRD+   NI+
Sbjct: 97  MEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHE---NRIIHRDLKPENIV 153

Query: 58  LDLNLEAS---VADFGTARLLHVDSSNRTL 84
           L    +     + D G A+ L         
Sbjct: 154 LQPGPQRLIHKIIDLGYAKELDQGELCTEF 183

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score = 50.7 bits (122), Expect = 2e-09
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 16/74 (21%)

Query: 2   ERGSLFCVLR-----DDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNI 56
             G+++  L+     D+            + +  +A+ALSY H   +  V+HRDI   N+
Sbjct: 92  PLGTVYRELQKLSKFDEQRT--------ATYITELANALSYCH---SKRVIHRDIKPENL 140

Query: 57  LLDLNLEASVADFG 70
           LL    E  +ADFG
Sbjct: 141 LLGSAGELKIADFG 154

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score = 51.2 bits (122), Expect = 2e-09
 Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 3/50 (6%)

Query: 24  RVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTAR 73
           R+ +   V   L+ LHH     +VH  +   +I+LD      +  F    
Sbjct: 208 RLQLTLQVIRLLASLHH---YGLVHTYLRPVDIVLDQRGGVFLTGFEHLV 254

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score = 50.8 bits (122), Expect = 2e-09
 Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 3/46 (6%)

Query: 27  IVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTA 72
           + + +  AL++LH      ++HRD+ + N+L+ L  +  +ADFG +
Sbjct: 122 VCRQMLEALNFLHSK---RIIHRDLKAGNVLMTLEGDIRLADFGVS 164

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656

 Score = 51.0 bits (122), Expect = 3e-09
 Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 5/79 (6%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
              G L   L+    +++L     +     ++ AL+YL    +   VHRDI++ N+L+  
Sbjct: 472 CTLGELRSFLQVRKFSLDL--ASLILYAYQLSTALAYLE---SKRFVHRDIAARNVLVSS 526

Query: 61  NLEASVADFGTARLLHVDS 79
           N    + DFG +R +   +
Sbjct: 527 NDCVKLGDFGLSRYMEDST 545

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 50.3 bits (121), Expect = 3e-09
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 31  VAHALSYLH--HDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSS 80
           +  AL   H   D   +V+HRD+   N+ LD      + DFG AR+L+ D+S
Sbjct: 120 LTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTS 171

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score = 50.5 bits (121), Expect = 3e-09
 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 9/76 (11%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVS------IVKSVAHALSYLHHDCTLSVVHRDISSN 54
           ME  S+           + N+T  +       I+KSV ++ SY+H+    ++ HRD+  +
Sbjct: 125 MENDSILKFDEYFFVLDK-NYTCFIPIQVIKCIIKSVLNSFSYIHN--EKNICHRDVKPS 181

Query: 55  NILLDLNLEASVADFG 70
           NIL+D N    ++DFG
Sbjct: 182 NILMDKNGRVKLSDFG 197

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score = 50.6 bits (122), Expect = 3e-09
 Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 17/87 (19%)

Query: 2   ERGSLFCVLR------DDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNN 55
             G +   L+       ++EA           +  +   + YLH   +  ++HRD++ +N
Sbjct: 94  HNGEMNRYLKNRVKPFSENEAR--------HFMHQIITGMLYLH---SHGILHRDLTLSN 142

Query: 56  ILLDLNLEASVADFGTARLLHVDSSNR 82
           +LL  N+   +ADFG A  L +     
Sbjct: 143 LLLTRNMNIKIADFGLATQLKMPHEKH 169

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298

 Score = 50.3 bits (121), Expect = 3e-09
 Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 5/76 (6%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           M  G L   +R             +S    VA  + YL        VHRD+++ N +LD 
Sbjct: 105 MCHGDLLQFIRSPQR--NPTVKDLISFGLQVARGMEYLA---EQKFVHRDLAARNCMLDE 159

Query: 61  NLEASVADFGTARLLH 76
           +    VADFG AR + 
Sbjct: 160 SFTVKVADFGLARDIL 175

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score = 50.4 bits (120), Expect = 3e-09
 Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 3/65 (4%)

Query: 19  LNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVD 78
           L    R+ +   V   L+ LHH     +VH  +   +I+LD      +  F         
Sbjct: 208 LVHHARLQLTLQVIRLLASLHH---YGLVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGAS 264

Query: 79  SSNRT 83
           + +  
Sbjct: 265 AVSPI 269

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373

 Score = 50.5 bits (121), Expect = 4e-09
 Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 5/83 (6%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           M+ G L   +R++     +     +     VA  + +L    +   VHRD+++ N +LD 
Sbjct: 173 MKHGDLRNFIRNETHNPTV--KDLIGFGLQVAKGMKFLA---SKKFVHRDLAARNCMLDE 227

Query: 61  NLEASVADFGTARLLHVDSSNRT 83
                VADFG AR ++    +  
Sbjct: 228 KFTVKVADFGLARDMYDKEFDSV 250

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} Length = 309

 Score = 50.3 bits (121), Expect = 4e-09
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 5/59 (8%)

Query: 25  VSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSSNRT 83
           V+IV+ +  AL   H        HRD+   NIL+  +  A + DFG A          T
Sbjct: 137 VAIVRQIGSALDAAHAA---GATHRDVKPENILVSADDFAYLVDFGIASA--TTDEKLT 190

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295

 Score = 50.4 bits (121), Expect = 4e-09
 Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 5/79 (6%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           +  GSL   L+   E I+    K +     +   + YL    T   +HRD+++ NIL++ 
Sbjct: 95  LPYGSLRDYLQKHKERIDHI--KLLQYTSQICKGMEYLG---TKRYIHRDLATRNILVEN 149

Query: 61  NLEASVADFGTARLLHVDS 79
                + DFG  ++L  D 
Sbjct: 150 ENRVKIGDFGLTKVLPQDK 168

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298

 Score = 50.3 bits (121), Expect = 4e-09
 Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 5/83 (6%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           M+ G L   +R++           +     VA  + YL    +   VHRD+++ N +LD 
Sbjct: 109 MKHGDLRNFIRNETH--NPTVKDLIGFGLQVAKGMKYLA---SKKFVHRDLAARNCMLDE 163

Query: 61  NLEASVADFGTARLLHVDSSNRT 83
                VADFG AR ++       
Sbjct: 164 KFTVKVADFGLARDMYDKEYYSV 186

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327

 Score = 50.0 bits (120), Expect = 4e-09
 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 7/81 (8%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLH-HDCTLSVVHRDISSNNILLD 59
           +  G L   L+     ++ +  + +     +   + YL    C    VHRD+++ NIL++
Sbjct: 108 LPSGCLRDFLQRHRARLDAS--RLLLYSSQICKGMEYLGSRRC----VHRDLAARNILVE 161

Query: 60  LNLEASVADFGTARLLHVDSS 80
                 +ADFG A+LL +D  
Sbjct: 162 SEAHVKIADFGLAKLLPLDKD 182

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* Length = 311

 Score = 49.9 bits (120), Expect = 5e-09
 Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 19  LNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVD 78
           +   + + ++     AL++ H      ++HRD+   NI++       V DFG AR +   
Sbjct: 113 MTPKRAIEVIADACQALNFSHQ---NGIIHRDVKPANIMISATNAVKVMDFGIARAIADS 169

Query: 79  SSNRT 83
            ++ T
Sbjct: 170 GNSVT 174

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326

 Score = 50.1 bits (120), Expect = 5e-09
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 5/80 (6%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           +  GSL   L+   E I+    K +     +   + YL    T   +HRD+++ NIL++ 
Sbjct: 126 LPYGSLRDYLQKHKERIDHI--KLLQYTSQICKGMEYLG---TKRYIHRDLATRNILVEN 180

Query: 61  NLEASVADFGTARLLHVDSS 80
                + DFG  ++L  D  
Sbjct: 181 ENRVKIGDFGLTKVLPQDKE 200

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 49.6 bits (119), Expect = 6e-09
 Identities = 18/84 (21%), Positives = 27/84 (32%), Gaps = 13/84 (15%)

Query: 4   GSLFCVLRDD----DEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLD 59
            SL            EA    + +          AL++LH   +  +VH D+   NI L 
Sbjct: 141 PSLQQHCEAWGASLPEAQVWGYLR------DTLLALAHLH---SQGLVHLDVKPANIFLG 191

Query: 60  LNLEASVADFGTARLLHVDSSNRT 83
                 + DFG    L    +   
Sbjct: 192 PRGRCKLGDFGLLVELGTAGAGEV 215

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score = 49.8 bits (119), Expect = 7e-09
 Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 10/91 (10%)

Query: 1   ME---RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNIL 57
           ME    GSL+ VL +   A  L  ++ + +++ V   +++L       +VHR+I   NI+
Sbjct: 88  MEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRE---NGIVHRNIKPGNIM 144

Query: 58  LDLNLEAS----VADFGTARLLHVDSSNRTL 84
             +  +      + DFG AR L  D    +L
Sbjct: 145 RVIGEDGQSVYKLTDFGAARELEDDEQFVSL 175

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score = 49.5 bits (118), Expect = 9e-09
 Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 10/91 (10%)

Query: 1   ME---RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNIL 57
           ME    GSL+ VL +   A  L  ++ + +++ V   +++L       +VHR+I   NI+
Sbjct: 88  MEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRE---NGIVHRNIKPGNIM 144

Query: 58  LDLNLEAS----VADFGTARLLHVDSSNRTL 84
             +  +      + DFG AR L  D    +L
Sbjct: 145 RVIGEDGQSVYKLTDFGAARELEDDEQFVSL 175

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323

 Score = 49.3 bits (118), Expect = 1e-08
 Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 6/79 (7%)

Query: 1   MERGSLFCVLRD---DDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNIL 57
           M+ G L   L      +    L     V  +  +A  + YL    + + +HRD+++ N +
Sbjct: 113 MKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLS---SRNFIHRDLAARNCM 169

Query: 58  LDLNLEASVADFGTARLLH 76
           L  ++   VADFG +R ++
Sbjct: 170 LAEDMTVCVADFGLSRKIY 188

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 48.9 bits (117), Expect = 1e-08
 Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 14/79 (17%)

Query: 2   ERGSLFCVLRDD-----DEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNI 56
           E G LF  +         E   L+W  ++        AL ++H      ++HRDI S NI
Sbjct: 106 EGGDLFKRINAQKGVLFQEDQILDWFVQI------CLALKHVH---DRKILHRDIKSQNI 156

Query: 57  LLDLNLEASVADFGTARLL 75
            L  +    + DFG AR+L
Sbjct: 157 FLTKDGTVQLGDFGIARVL 175

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} Length = 294

 Score = 48.8 bits (117), Expect = 1e-08
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 5/65 (7%)

Query: 19  LNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVD 78
           L+    ++    +   + + H    + +VHRDI   NIL+D N    + DFG A+   + 
Sbjct: 108 LSVDTAINFTNQILDGIKHAHD---MRIVHRDIKPQNILIDSNKTLKIFDFGIAKA--LS 162

Query: 79  SSNRT 83
            ++ T
Sbjct: 163 ETSLT 167

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313

 Score = 48.8 bits (117), Expect = 1e-08
 Identities = 17/79 (21%), Positives = 36/79 (45%), Gaps = 6/79 (7%)

Query: 1   MERGSLFCVLR---DDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNIL 57
           M+ G L   L     +     +     +  +  +A  + YL      + +HRD+++ N +
Sbjct: 123 MKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYL---SNRNFLHRDLAARNCM 179

Query: 58  LDLNLEASVADFGTARLLH 76
           L  ++   VADFG ++ ++
Sbjct: 180 LRDDMTVCVADFGLSKKIY 198

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score = 48.4 bits (116), Expect = 2e-08
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 19/78 (24%)

Query: 1   ME---RGSLFCVLR-----DDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDIS 52
           +E   RG L+  L+     D+  +         + ++ +A AL Y H      V+HRDI 
Sbjct: 93  LEFAPRGELYKELQKHGRFDEQRS--------ATFMEELADALHYCH---ERKVIHRDIK 141

Query: 53  SNNILLDLNLEASVADFG 70
             N+L+    E  +ADFG
Sbjct: 142 PENLLMGYKGELKIADFG 159

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 48.3 bits (115), Expect = 2e-08
 Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 3/82 (3%)

Query: 2   ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLN 61
            + +L   +       +      + I   +A A+ +LH      ++HRD+  +NI   ++
Sbjct: 144 RKENLKDWMNRRCSLEDREHGVCLHIFIQIAEAVEFLHS---KGLMHRDLKPSNIFFTMD 200

Query: 62  LEASVADFGTARLLHVDSSNRT 83
               V DFG    +  D   +T
Sbjct: 201 DVVKVGDFGLVTAMDQDEEEQT 222

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 48.4 bits (116), Expect = 2e-08
 Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 31  VAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSSNRT 83
           +   + Y+H   +  +++RD+  +NI L    +  + DFG    L  D     
Sbjct: 131 ITKGVDYIH---SKKLINRDLKPSNIFLVDTKQVKIGDFGLVTSLKNDGKRTR 180

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318

 Score = 48.5 bits (116), Expect = 2e-08
 Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 7/79 (8%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           +  GSL   L        +   + +   + +   ++YLH       +HRD+++ N+LLD 
Sbjct: 117 VPLGSLRDYLPRH----SIGLAQLLLFAQQICEGMAYLH---AQHYIHRDLAARNVLLDN 169

Query: 61  NLEASVADFGTARLLHVDS 79
           +    + DFG A+ +    
Sbjct: 170 DRLVKIGDFGLAKAVPEGH 188

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score = 48.5 bits (116), Expect = 2e-08
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 3/58 (5%)

Query: 27  IVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSSNRTL 84
           + + +  ALSY+H   +  ++HRD+   NI +D +    + DFG A+ +H       L
Sbjct: 121 LFRQILEALSYIH---SQGIIHRDLKPMNIFIDESRNVKIGDFGLAKNVHRSLDILKL 175

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score = 48.2 bits (115), Expect = 2e-08
 Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 8/63 (12%)

Query: 26  SIVKSVAHALSYLHHDCTLSVVHRDISSNNILL-----DLNLEASVADFGTARLLHVDSS 80
           ++++     L++LH    L++VHRD+  +NIL+        ++A ++DFG  + L V   
Sbjct: 122 TLLQQTTSGLAHLHS---LNIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAVGRH 178

Query: 81  NRT 83
           + +
Sbjct: 179 SFS 181

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289

 Score = 47.7 bits (114), Expect = 3e-08
 Identities = 17/89 (19%), Positives = 39/89 (43%), Gaps = 17/89 (19%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYL--HHDCTLSVVHRDISSNNILL 58
           ++ GSL   L+ +   I + W  ++ + K +A A+ +L  +      ++H ++ + NILL
Sbjct: 94  VKFGSLDTYLKKNKNCINILW--KLEVAKQLAAAMHFLEENT-----LIHGNVCAKNILL 146

Query: 59  DLNLEAS--------VADFGTARLLHVDS 79
               +          ++D G +  +    
Sbjct: 147 IREEDRKTGNPPFIKLSDPGISITVLPKD 175

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 47.3 bits (113), Expect = 4e-08
 Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 3/45 (6%)

Query: 31  VAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL 75
           +  AL ++H   +  V+HRDI   N+ +       + D G  R  
Sbjct: 145 LCSALEHMH---SRRVMHRDIKPANVFITATGVVKLGDLGLGRFF 186

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score = 46.7 bits (111), Expect = 7e-08
 Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 31  VAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSSNRT 83
              A+ ++H      ++HRD+   N+LL       + DFG+A  +        
Sbjct: 145 TCRAVQHMHR-QKPPIIHRDLKVENLLLSNQGTIKLCDFGSATTISHYPDYSW 196

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score = 46.5 bits (111), Expect = 9e-08
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 3/59 (5%)

Query: 26  SIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSSNRTL 84
            I++++   +  LH    L++VHRD+   NILLD ++   + DFG +  L      R +
Sbjct: 128 KIMRALLEVICALH---KLNIVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGEKLREV 183

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} Length = 305

 Score = 46.5 bits (111), Expect = 9e-08
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 34  ALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSSNRTL 84
            L YLH      +VH+DI   N+LL       ++  G A  LH  +++ T 
Sbjct: 121 GLEYLHS---QGIVHKDIKPGNLLLTTGGTLKISALGVAEALHPFAADDTC 168

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365

 Score = 46.2 bits (110), Expect = 1e-07
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 3/59 (5%)

Query: 26  SIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSSNRTL 84
           SI++S+  A+S+LH     ++VHRD+   NILLD N++  ++DFG +  L      R L
Sbjct: 204 SIMRSLLEAVSFLHA---NNIVHRDLKPENILLDDNMQIRLSDFGFSCHLEPGEKLREL 259

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score = 46.2 bits (110), Expect = 1e-07
 Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 9/83 (10%)

Query: 1   ME--RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILL 58
           ME     L   L+   ++I+    K     K++  A+  +H      +VH D+   N L+
Sbjct: 88  MECGNIDLNSWLKKK-KSIDPWERKS--YWKNMLEAVHTIHQ---HGIVHSDLKPANFLI 141

Query: 59  DLNLEASVADFGTARLLHVDSSN 81
             +    + DFG A  +  D+++
Sbjct: 142 V-DGMLKLIDFGIANQMQPDTTS 163

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322

 Score = 46.1 bits (110), Expect = 1e-07
 Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 10/83 (12%)

Query: 1   MERGSLFCVLR-------DDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISS 53
           M RG L   LR       ++      + +K + +   +A  ++YL+       VHRD+++
Sbjct: 110 MTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLN---ANKFVHRDLAA 166

Query: 54  NNILLDLNLEASVADFGTARLLH 76
            N ++  +    + DFG  R ++
Sbjct: 167 RNCMVAEDFTVKIGDFGMTRDIY 189

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 46.0 bits (109), Expect = 1e-07
 Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 9/86 (10%)

Query: 1   ME--RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILL 58
           ME     L   L+   ++I+    K     K++  A+  +H      +VH D+   N L+
Sbjct: 135 MECGNIDLNSWLKKK-KSIDPWERKS--YWKNMLEAVHTIHQ---HGIVHSDLKPANFLI 188

Query: 59  DLNLEASVADFGTARLLHVDSSNRTL 84
             +    + DFG A  +  D+++   
Sbjct: 189 V-DGMLKLIDFGIANQMQPDTTSVVK 213

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 45.8 bits (109), Expect = 2e-07
 Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 9/86 (10%)

Query: 1   ME--RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILL 58
           ME     L   L+   ++I+    K     K++  A+  +H      +VH D+   N L+
Sbjct: 107 MECGNIDLNSWLKKK-KSIDPWERKS--YWKNMLEAVHTIHQ---HGIVHSDLKPANFLI 160

Query: 59  DLNLEASVADFGTARLLHVDSSNRTL 84
             +    + DFG A  +  D+++   
Sbjct: 161 V-DGMLKLIDFGIANQMQPDTTSVVK 185

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419

 Score = 45.8 bits (109), Expect = 2e-07
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 6/61 (9%)

Query: 27  IVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEAS---VADFGTARLLHVDSSNRT 83
               +  A+ YLH      ++HRD+   N+LL    E     + DFG +++L   S  RT
Sbjct: 244 YFYQMLLAVQYLH---ENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSLMRT 300

Query: 84  L 84
           L
Sbjct: 301 L 301

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens} Length = 412

 Score = 45.1 bits (107), Expect = 2e-07
 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 34  ALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSSNRT 83
           A+  +H    L  VHRDI  +NILLD      +ADFG+   L  D + R+
Sbjct: 174 AIDSVH---RLGYVHRDIKPDNILLDRCGHIRLADFGSCLKLRADGTVRS 220

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 45.0 bits (107), Expect = 3e-07
 Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 3/52 (5%)

Query: 31  VAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSSNR 82
           +   L  +H        HRD+   NILL    +  + D G+     +     
Sbjct: 143 ICRGLEAIHA---KGYAHRDLKPTNILLGDEGQPVLMDLGSMNQACIHVEGS 191

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} Length = 335

 Score = 45.1 bits (107), Expect = 3e-07
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 31  VAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDS 79
           +  A+ YL       ++HRDI   NI++  +    + DFG+A  L    
Sbjct: 139 LVSAVGYLR---LKDIIHRDIKDENIVIAEDFTIKLIDFGSAAYLERGK 184

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329

 Score = 45.0 bits (107), Expect = 3e-07
 Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 15/88 (17%)

Query: 1   MERGSLFCVLR------------DDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVH 48
           M  G L   LR            +D     L   + +++   VA  + YL     L  VH
Sbjct: 125 MRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLA---GLHFVH 181

Query: 49  RDISSNNILLDLNLEASVADFGTARLLH 76
           RD+++ N L+   L   + DFG +R ++
Sbjct: 182 RDLATRNCLVGQGLVVKIGDFGMSRDIY 209

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major} Length = 360

 Score = 45.0 bits (107), Expect = 3e-07
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 2/49 (4%)

Query: 34  ALSYLHHDCTLSVVHRDISSNNILLD-LNLEASVADFGTARLLHVDSSN 81
           ++  LH   +++V HRDI  +N+L++  +    + DFG+A+ L     N
Sbjct: 141 SIGCLHLP-SVNVCHRDIKPHNVLVNEADGTLKLCDFGSAKKLSPSEPN 188

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345

 Score = 44.8 bits (106), Expect = 4e-07
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 5/53 (9%)

Query: 26  SIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASV--ADFGTARLLH 76
           +I++ +  AL YLH+     + HRDI   N L   N    +   DFG ++  +
Sbjct: 172 NIMRQIFSALHYLHN---QGICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFY 221

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* Length = 322

 Score = 44.6 bits (106), Expect = 4e-07
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 6/61 (9%)

Query: 27  IVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEAS---VADFGTARLLHVDSSNRT 83
               +  A+ YLH      ++HRD+   N+LL    E     + DFG +++L   S  RT
Sbjct: 119 YFYQMLLAVQYLHE---NGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSLMRT 175

Query: 84  L 84
           L
Sbjct: 176 L 176

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens} Length = 384

 Score = 44.6 bits (106), Expect = 4e-07
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 34  ALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSSNRTL 84
           AL YL       ++HRD+  +NILLD +    + DF  A +L  ++   T+
Sbjct: 127 ALDYLQ---NQRIIHRDMKPDNILLDEHGHVHITDFNIAAMLPRETQITTM 174

>1uu3_A HPDK1, 3-phosphoinositide dependent protein kinase-1; PKB, inhibitor, LY333531, diabetes, cancer, transferase, serine/threonine-protein kinase; HET: SEP LY4; 1.7A {Homo sapiens} SCOP: d.144.1.7 PDB: 1okz_A* 1oky_A* 1uu7_A* 1uu8_A* 2biy_A* 3rwp_A* 2xch_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* ... Length = 310

 Score = 44.5 bits (106), Expect = 4e-07
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 4/54 (7%)

Query: 31  VAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTA-RLLHVDSSNRT 83
           +  AL YLH      ++HRD+   NILL+ ++   + DFGTA  L       R 
Sbjct: 139 IVSALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARA 189

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 44.1 bits (104), Expect = 6e-07
 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 4/51 (7%)

Query: 25  VSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL 75
           ++ +  +  ALSYLH    + +V+ D+   NI+L    +  + D G    +
Sbjct: 185 IAYLLEILPALSYLHS---IGLVYNDLKPENIMLTEE-QLKLIDLGAVSRI 231

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333

 Score = 43.8 bits (104), Expect = 7e-07
 Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 14/90 (15%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKR-----------VSIVKSVAHALSYLHHDCTLSVVHR 49
              G L   LR     +E +               +     VA  +++L    + + +HR
Sbjct: 132 CCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLA---SKNCIHR 188

Query: 50  DISSNNILLDLNLEASVADFGTARLLHVDS 79
           D+++ N+LL     A + DFG AR +  DS
Sbjct: 189 DVAARNVLLTNGHVAKIGDFGLARDIMNDS 218

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} Length = 312

 Score = 43.8 bits (104), Expect = 7e-07
 Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 4/47 (8%)

Query: 31  VAHALSYLHHDCTLSVVHRDISSNNILLDL-NLEASVADFGTARLLH 76
           V  A+ + H      VVHRDI   NIL+DL    A + DFG+  LLH
Sbjct: 148 VVAAIQHCHS---RGVVHRDIKDENILIDLRRGCAKLIDFGSGALLH 191

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A* Length = 410

 Score = 43.9 bits (104), Expect = 7e-07
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 34  ALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSSNRT 83
           AL  +H    +  +HRD+  +N+LLD +    +ADFGT   ++ +   R 
Sbjct: 180 ALDAIHS---MGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMVRC 226

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A* Length = 437

 Score = 44.0 bits (104), Expect = 7e-07
 Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 3/50 (6%)

Query: 34  ALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSSNRT 83
           A+  +H    L  VHRDI  +NIL+D+N    +ADFG+   L  D + ++
Sbjct: 187 AIDSVH---QLHYVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGTVQS 233

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* Length = 351

 Score = 43.8 bits (104), Expect = 8e-07
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 7/56 (12%)

Query: 26  SIVKSVAH----ALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV 77
           S +K V       L Y+H +    ++HRD+ + N+L+  +    +ADFG AR   +
Sbjct: 124 SEIKRVMQMLLNGLYYIHRN---KILHRDMKAANVLITRDGVLKLADFGLARAFSL 176

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327

 Score = 43.8 bits (104), Expect = 8e-07
 Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 10/83 (12%)

Query: 1   MERGSLFCVLR----DDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNI 56
           M  G L   LR       +   L     + + + +A    YL        +HRDI++ N 
Sbjct: 115 MAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLE---ENHFIHRDIAARNC 171

Query: 57  LLDL---NLEASVADFGTARLLH 76
           LL        A + DFG AR ++
Sbjct: 172 LLTCPGPGRVAKIGDFGMARDIY 194

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* Length = 329

 Score = 43.4 bits (103), Expect = 9e-07
 Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 12/57 (21%)

Query: 26  SIVKSVAH----ALSYLHHDCTLSVVHRDISSNNILLDLNLEAS-----VADFGTAR 73
            ++KS  +     +++ H       +HRD+   N+LL ++  +      + DFG AR
Sbjct: 132 RVIKSFLYQLINGVNFCHSR---RCLHRDLKPQNLLLSVSDASETPVLKIGDFGLAR 185

>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289

 Score = 43.4 bits (103), Expect = 9e-07
 Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 16/89 (17%)

Query: 1   MERGSLFCVLR-------------DDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVV 47
              G L   L              D      L     V +V  +A  + YL    +  VV
Sbjct: 94  CSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLS---SHHVV 150

Query: 48  HRDISSNNILLDLNLEASVADFGTARLLH 76
           H+D+++ N+L+   L   ++D G  R ++
Sbjct: 151 HKDLATRNVLVYDKLNVKISDLGLFREVY 179

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382

 Score = 43.5 bits (103), Expect = 9e-07
 Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 16/89 (17%)

Query: 1   MERGSLFCVLR-------------DDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVV 47
             +G+L   L+               +   +L+    VS    VA  + YL    +   +
Sbjct: 157 ASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLA---SKKCI 213

Query: 48  HRDISSNNILLDLNLEASVADFGTARLLH 76
           HRD+++ N+L+  +    +ADFG AR +H
Sbjct: 214 HRDLAARNVLVTEDNVMKIADFGLARDIH 242

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II} Length = 383

 Score = 43.6 bits (103), Expect = 9e-07
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 4/49 (8%)

Query: 34  ALSYLHHDCTLSVVHRDISSNNILLDLNL-EASVADFGTARLLHVDSSN 81
           A+ ++H   +L + HRDI   N+L++       + DFG+A+ L     +
Sbjct: 153 AVGFIH---SLGICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSEPS 198

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367

 Score = 43.5 bits (103), Expect = 1e-06
 Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 10/83 (12%)

Query: 1   MERGSLFCVLR----DDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNI 56
           M  G L   LR       +   L     + + + +A    YL        +HRDI++ N 
Sbjct: 156 MAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLE---ENHFIHRDIAARNC 212

Query: 57  LLDLNLEASV---ADFGTARLLH 76
           LL       V    DFG AR ++
Sbjct: 213 LLTCPGPGRVAKIGDFGMARDIY 235

>3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297

 Score = 43.4 bits (103), Expect = 1e-06
 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 16/89 (17%)

Query: 1   MERGSLFCVLR-------------DDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVV 47
           M+ G L   LR                   EL  ++ + I   +A  + YL    +   V
Sbjct: 99  MKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLA---SQHFV 155

Query: 48  HRDISSNNILLDLNLEASVADFGTARLLH 76
           HRD+++ N L+  NL   + DFG +R ++
Sbjct: 156 HRDLATRNCLVGANLLVKIGDFGMSRDVY 184

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A Length = 304

 Score = 43.3 bits (103), Expect = 1e-06
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 6/53 (11%)

Query: 27  IVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEAS---VADFGTARLLH 76
           +++ V  A+ YLH      +VHRD+   N+L     E S   + DFG +++  
Sbjct: 111 VIQQVLSAVKYLH---ENGIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQ 160

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... Length = 320

 Score = 43.1 bits (102), Expect = 1e-06
 Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 4/47 (8%)

Query: 31  VAHALSYLHHDCTLSVVHRDISSNNILLDLN-LEASVADFGTARLLH 76
           V  A+ + H      V+HRDI   NIL+DLN  E  + DFG+  LL 
Sbjct: 158 VLEAVRHCH---NCGVLHRDIKDENILIDLNRGELKLIDFGSGALLK 201

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C Length = 400

 Score = 43.2 bits (102), Expect = 1e-06
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 6/61 (9%)

Query: 26  SIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEAS---VADFGTARLLHVDSSNR 82
            I+KS+  A+ YLH   ++++ HRD+   N+L       +   + DFG A+     +S  
Sbjct: 165 EIMKSIGEAIQYLH---SINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLT 221

Query: 83  T 83
           T
Sbjct: 222 T 222

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334

 Score = 43.0 bits (102), Expect = 1e-06
 Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 16/91 (17%)

Query: 1   MERGSLFCVLR-------------DDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVV 47
             +G+L   LR             +     ++ +   VS    +A  + YL    +   +
Sbjct: 123 ASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLA---SQKCI 179

Query: 48  HRDISSNNILLDLNLEASVADFGTARLLHVD 78
           HRD+++ N+L+  N    +ADFG AR ++  
Sbjct: 180 HRDLAARNVLVTENNVMKIADFGLARDINNI 210

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 308

 Score = 42.9 bits (102), Expect = 1e-06
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 7/52 (13%)

Query: 26  SIVKSVAH----ALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTAR 73
             +K +       L +LH +C   +VHRD+   NIL+       +ADFG AR
Sbjct: 120 ETIKDLMRQFLRGLDFLHANC---IVHRDLKPENILVTSGGTVKLADFGLAR 168

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} Length = 298

 Score = 43.0 bits (102), Expect = 1e-06
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 3/43 (6%)

Query: 34  ALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH 76
            + YLH+     ++HRDI  +N+L+  +    +ADFG +    
Sbjct: 149 GIEYLHY---QKIIHRDIKPSNLLVGEDGHIKIADFGVSNEFK 188

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A Length = 292

 Score = 42.9 bits (102), Expect = 1e-06
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 7/52 (13%)

Query: 26  SIVKSVAH----ALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTAR 73
            IVKS        L + H      V+HRD+   N+L++ N E  +A+FG AR
Sbjct: 101 EIVKSFLFQLLKGLGFCHSRN---VLHRDLKPQNLLINRNGELKLANFGLAR 149

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* Length = 317

 Score = 43.0 bits (102), Expect = 2e-06
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 7/52 (13%)

Query: 26  SIVKSVAH----ALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTAR 73
           ++VK         L++ H +    ++HRD+   N+L++   +  + DFG AR
Sbjct: 108 NLVKYFQWQLLQGLAFCHEN---KILHRDLKPQNLLINKRGQLKLGDFGLAR 156

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} Length = 324

 Score = 43.0 bits (102), Expect = 2e-06
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 7/52 (13%)

Query: 26  SIVKSVAH----ALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTAR 73
             VK         L+Y H      V+HRD+   N+L++   E  +ADFG AR
Sbjct: 100 HNVKLFLFQLLRGLAYCHRQK---VLHRDLKPQNLLINERGELKLADFGLAR 148

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... Length = 420

 Score = 42.8 bits (101), Expect = 2e-06
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 4/43 (9%)

Query: 34  ALSYLHHDCTLSVVHRDISSNNILLDLNLEA-SVADFGTARLL 75
           +L+Y+H   +  + HRDI   N+LLD +     + DFG+A+ L
Sbjct: 168 SLAYIH---SFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQL 207

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} Length = 349

 Score = 42.7 bits (101), Expect = 2e-06
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 6/62 (9%)

Query: 26  SIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEAS---VADFGTARLLHVDSSNR 82
             VK +  A++YLH      +VHRD+   N+L       +   +ADFG ++++      +
Sbjct: 152 DAVKQILEAVAYLH---ENGIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQVLMK 208

Query: 83  TL 84
           T+
Sbjct: 209 TV 210

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316

 Score = 42.6 bits (101), Expect = 2e-06
 Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 16/92 (17%)

Query: 1   MERGSLFCVLR-------------DDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVV 47
            + G+L   LR             +D     L     +     VA  + +L    +   +
Sbjct: 114 CKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---SRKCI 170

Query: 48  HRDISSNNILLDLNLEASVADFGTARLLHVDS 79
           HRD+++ NILL       + DFG AR ++ D 
Sbjct: 171 HRDLAARNILLSEKNVVKICDFGLARDIYKDP 202

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B Length = 326

 Score = 42.6 bits (101), Expect = 2e-06
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 7/52 (13%)

Query: 26  SIVKSVAH----ALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTAR 73
             +K +       L +LH      VVHRD+   NIL+  + +  +ADFG AR
Sbjct: 120 ETIKDMMFQLLRGLDFLHSHR---VVHRDLKPQNILVTSSGQIKLADFGLAR 168

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* Length = 276

 Score = 42.6 bits (101), Expect = 2e-06
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 3/50 (6%)

Query: 34  ALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSSNRT 83
           A+ Y H      VVHRD+   N+LLD ++ A +ADFG + ++      RT
Sbjct: 123 AVDYCHR---HMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRT 169

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ... Length = 299

 Score = 42.5 bits (101), Expect = 2e-06
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 7/52 (13%)

Query: 26  SIVKSVAH----ALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTAR 73
            ++KS        L++ H      V+HRD+   N+L++      +ADFG AR
Sbjct: 103 PLIKSYLFQLLQGLAFCHSHR---VLHRDLKPQNLLINTEGAIKLADFGLAR 151

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score = 42.7 bits (100), Expect = 2e-06
 Identities = 14/97 (14%), Positives = 32/97 (32%), Gaps = 16/97 (16%)

Query: 1   MERGSLFCVLRDDDEAIE--LNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILL 58
              G+L   +       E  +     +S    + + +  +H      ++H DI  +N +L
Sbjct: 149 YSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVH---DCEIIHGDIKPDNFIL 205

Query: 59  -----------DLNLEASVADFGTARLLHVDSSNRTL 84
                      DL+   ++ D G +  + +       
Sbjct: 206 GNGFLEQDDEDDLSAGLALIDLGQSIDMKLFPKGTIF 242

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A Length = 342

 Score = 42.7 bits (101), Expect = 2e-06
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 7/59 (11%)

Query: 26  SIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEAS----VADFGTARLLHVDSS 80
           +++ ++   + YLH      VVHRD+  +NIL            + DFG A+ L  ++ 
Sbjct: 120 AVLFTITKTVEYLH---AQGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAENG 175

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 Length = 346

 Score = 42.6 bits (101), Expect = 2e-06
 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 7/52 (13%)

Query: 26  SIVKSVAH----ALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTAR 73
           S +K+        L YLH      ++HRD+  NN+LLD N    +ADFG A+
Sbjct: 112 SHIKAYMLMTLQGLEYLHQH---WILHRDLKPNNLLLDENGVLKLADFGLAK 160

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328

 Score = 42.7 bits (101), Expect = 2e-06
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 3/38 (7%)

Query: 33  HALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFG 70
            A+ Y H      +VHRD+ + N+LLD ++   +ADFG
Sbjct: 125 SAVQYCHQ---KRIVHRDLKAENLLLDADMNIKIADFG 159

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313

 Score = 42.6 bits (101), Expect = 2e-06
 Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 18/94 (19%)

Query: 1   MERGSLFCVLRD---------------DDEAIELNWTKRVSIVKSVAHALSYLHHDCTLS 45
              G L   LR                +D+ + L+    +S    VA  +++L    + +
Sbjct: 109 CCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLA---SKN 165

Query: 46  VVHRDISSNNILLDLNLEASVADFGTARLLHVDS 79
            +HRD+++ NILL       + DFG AR +  DS
Sbjct: 166 CIHRDLAARNILLTHGRITKICDFGLARDIKNDS 199

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score = 42.5 bits (100), Expect = 2e-06
 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 16/68 (23%)

Query: 26  SIVKSVAHALSYLHHDCTLSVVHRDISSNNILLD-------------LNLEASVADFGTA 72
           S+++ +A  +++LH    L ++HRD+   NIL+               NL   ++DFG  
Sbjct: 119 SLLRQIASGVAHLHS---LKIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGLC 175

Query: 73  RLLHVDSS 80
           + L    S
Sbjct: 176 KKLDSGQS 183

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A Length = 288

 Score = 42.5 bits (101), Expect = 2e-06
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 7/52 (13%)

Query: 26  SIVKSVAH----ALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTAR 73
              KS        ++Y H      V+HRD+   N+L++   E  +ADFG AR
Sbjct: 100 VTAKSFLLQLLNGIAYCHDRR---VLHRDLKPQNLLINREGELKIADFGLAR 148

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362

 Score = 42.3 bits (100), Expect = 2e-06
 Identities = 13/62 (20%), Positives = 30/62 (48%), Gaps = 6/62 (9%)

Query: 26  SIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEAS---VADFGTARLLHVDSSNR 82
             ++ +  +++Y H   +  +VHR++   N+LL    + +   +ADFG A  ++   +  
Sbjct: 132 HCIQQILESIAYCH---SNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEAWH 188

Query: 83  TL 84
             
Sbjct: 189 GF 190

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A Length = 325

 Score = 42.3 bits (100), Expect = 3e-06
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 6/57 (10%)

Query: 26  SIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEAS---VADFGTARLLHVDS 79
            I++ +  A+S++H    + VVHRD+   N+L     +     + DFG ARL   D+
Sbjct: 110 YIMRKLVSAVSHMH---DVGVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDN 163

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370

 Score = 42.3 bits (100), Expect = 3e-06
 Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 16/92 (17%)

Query: 1   MERGSLFCVLR-------------DDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVV 47
             +G+L   LR             +     ++ +   VS    +A  + YL    +   +
Sbjct: 169 ASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLA---SQKCI 225

Query: 48  HRDISSNNILLDLNLEASVADFGTARLLHVDS 79
           HRD+++ N+L+  N    +ADFG AR ++   
Sbjct: 226 HRDLAARNVLVTENNVMKIADFGLARDINNID 257

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} Length = 336

 Score = 42.3 bits (100), Expect = 3e-06
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%)

Query: 34  ALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSSNRT 83
           A+ Y H      +VHRD+   N+LLD NL   +ADFG + ++   +  +T
Sbjct: 120 AIEYCHR---HKIVHRDLKPENLLLDDNLNVKIADFGLSNIMTDGNFLKT 166

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} PDB: 2qkr_A* Length = 311

 Score = 42.2 bits (100), Expect = 3e-06
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 7/52 (13%)

Query: 26  SIVKSVAH----ALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTAR 73
           S +K   +     +++ H      ++HRD+   N+L++ +    +ADFG AR
Sbjct: 119 SQIKIYLYQLLRGVAHCHQHR---ILHRDLKPQNLLINSDGALKLADFGLAR 167

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... Length = 276

 Score = 42.2 bits (100), Expect = 3e-06
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 34  ALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSSNRTL 84
            + YLH    + + HRDI   N+LLD      ++DFG A +   ++  R L
Sbjct: 117 GVVYLHG---IGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLL 164

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 405

 Score = 42.1 bits (99), Expect = 3e-06
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 11/57 (19%)

Query: 26  SIVKSVAH----ALSYLHHDCTLSVVHRDISSNNILLDLNLEAS----VADFGTARL 74
            +VKS+ +     + YLH +    V+HRD+   NIL+           +AD G ARL
Sbjct: 128 GMVKSLLYQILDGIHYLHANW---VLHRDLKPANILVMGEGPERGRVKIADMGFARL 181

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444

 Score = 41.9 bits (99), Expect = 3e-06
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 6/56 (10%)

Query: 26  SIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEAS---VADFGTARLLHVD 78
             ++ +  A+ + H    + VVHR++   N+LL   L+ +   +ADFG A  +  +
Sbjct: 114 HCIQQILEAVLHCH---QMGVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGE 166

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* Length = 336

 Score = 41.9 bits (99), Expect = 3e-06
 Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 6/54 (11%)

Query: 26  SIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEAS---VADFGTARLLH 76
            I++ +  A+ +LH   + ++ HRD+   N+L     + +   + DFG A+   
Sbjct: 132 EIMRDIGTAIQFLH---SHNIAHRDVKPENLLYTSKEKDAVLKLTDFGFAKETT 182

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} Length = 311

 Score = 41.8 bits (99), Expect = 3e-06
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 7/56 (12%)

Query: 26  SIVKSVAH----ALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV 77
            +VKS+      A+++ H     + +HRD+   NIL+  +    + DFG ARLL  
Sbjct: 102 HLVKSITWQTLQAVNFCHKH---NCIHRDVKPENILITKHSVIKLCDFGFARLLTG 154

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} Length = 331

 Score = 41.8 bits (99), Expect = 4e-06
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 7/56 (12%)

Query: 26  SIVKSVAH----ALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV 77
            +V+         + + H     +++HRDI   NIL+  +    + DFG AR L  
Sbjct: 124 QVVQKYLFQIINGIGFCHSH---NIIHRDIKPENILVSQSGVVKLCDFGFARTLAA 176

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A Length = 316

 Score = 41.9 bits (99), Expect = 4e-06
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 26  SIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEAS---VADFGTARLLHVDSSNR 82
            +V+ VA AL +LH      + HRD+   NIL +   + S   + DF     + ++    
Sbjct: 115 VVVQDVASALDFLH---NKGIAHRDLKPENILCEHPNQVSPVKICDFDLGSGIKLNGDCS 171

Query: 83  TL 84
            +
Sbjct: 172 PI 173

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284

 Score = 41.8 bits (99), Expect = 4e-06
 Identities = 13/62 (20%), Positives = 30/62 (48%), Gaps = 6/62 (9%)

Query: 26  SIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEAS---VADFGTARLLHVDSSNR 82
             ++ +  +++Y H   +  +VHR++   N+LL    + +   +ADFG A  ++   +  
Sbjct: 109 HCIQQILESIAYCH---SNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEAWH 165

Query: 83  TL 84
             
Sbjct: 166 GF 167

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} Length = 476

 Score = 41.7 bits (98), Expect = 4e-06
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 34  ALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSSNRT 83
            + Y H      VVHRD+   N+LLD ++ A +ADFG + ++      RT
Sbjct: 128 GVDYCHR---HMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRT 174

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277

 Score = 41.8 bits (99), Expect = 4e-06
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 6/51 (11%)

Query: 26  SIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEAS---VADFGTAR 73
            I+K V  A++Y H    L+V HRD+   N L   +   S   + DFG A 
Sbjct: 110 RIMKDVLSAVAYCHK---LNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAA 157

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351

 Score = 41.5 bits (98), Expect = 4e-06
 Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 6/54 (11%)

Query: 26  SIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEAS---VADFGTARLLH 76
             ++ +  AL Y H     +++HRD+  + +LL     ++   +  FG A  L 
Sbjct: 134 HYMRQILEALRYCHD---NNIIHRDVKPHCVLLASKENSAPVKLGGFGVAIQLG 184

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287

 Score = 41.4 bits (98), Expect = 4e-06
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 6/51 (11%)

Query: 26  SIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEAS---VADFGTAR 73
            I+K V   ++Y+H     ++VHRD+   NILL+   +     + DFG + 
Sbjct: 125 RIIKQVFSGITYMH---KHNIVHRDLKPENILLESKEKDCDIKIIDFGLST 172

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score = 41.6 bits (98), Expect = 5e-06
 Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 26  SIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEAS---VADFGTARLLHVDSSNR 82
            I++ V   ++Y+H      +VHRD+   N+LL+   + +   + DFG +         +
Sbjct: 130 RIIRQVLSGITYMHK---NKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASKKMK 186

Query: 83  TL 84
             
Sbjct: 187 DK 188

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} Length = 394

 Score = 41.5 bits (98), Expect = 5e-06
 Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 4/43 (9%)

Query: 34  ALSYLHHDCTLSVVHRDISSNNILLDLN-LEASVADFGTARLL 75
           +L+Y+H   ++ + HRDI   N+LLD       + DFG+A++L
Sbjct: 153 SLAYIH---SIGICHRDIKPQNLLLDPPSGVLKLIDFGSAKIL 192

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score = 41.6 bits (98), Expect = 5e-06
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 6/51 (11%)

Query: 26  SIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEAS---VADFGTAR 73
            I+K V   ++YLH     ++VHRD+   N+LL+   + +   + DFG + 
Sbjct: 140 VIIKQVLSGVTYLHK---HNIVHRDLKPENLLLESKEKDALIKIVDFGLSA 187

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* Length = 323

 Score = 41.5 bits (98), Expect = 5e-06
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 34  ALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSSNRTL 84
            + YLH    + + HRDI   N+LLD      ++DFG A +   ++  R L
Sbjct: 117 GVVYLHG---IGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLL 164

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score = 41.2 bits (97), Expect = 6e-06
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 6/57 (10%)

Query: 26  SIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEAS---VADFGTARLLHVDS 79
           +I+K +   + YLH     ++VHRDI   NILL+         + DFG +     D 
Sbjct: 150 NIMKQILSGICYLHK---HNIVHRDIKPENILLENKNSLLNIKIVDFGLSSFFSKDY 203

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327

 Score = 41.1 bits (97), Expect = 6e-06
 Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 16/86 (18%)

Query: 1   MERGSLFCVLR-------------DDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVV 47
              G+L   LR              +  A  L+  + +     VA  + YL        +
Sbjct: 108 APHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYL---SQKQFI 164

Query: 48  HRDISSNNILLDLNLEASVADFGTAR 73
           HRD+++ NIL+  N  A +ADFG +R
Sbjct: 165 HRDLAARNILVGENYVAKIADFGLSR 190

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} Length = 362

 Score = 41.1 bits (97), Expect = 6e-06
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 34  ALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDS 79
            L  LH      VVHRD+   NILL  N + ++ DF  AR    D+
Sbjct: 146 GLHVLH---EAGVVHRDLHPGNILLADNNDITICDFNLAREDTADA 188

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score = 41.1 bits (97), Expect = 6e-06
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 6/51 (11%)

Query: 26  SIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEAS---VADFGTAR 73
            ++K + +AL+Y H      VVH+D+   NIL       S   + DFG A 
Sbjct: 128 ELMKQMMNALAYFHS---QHVVHKDLKPENILFQDTSPHSPIKIIDFGLAE 175

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A* 3hng_A* Length = 359

 Score = 41.1 bits (96), Expect = 8e-06
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 25  VSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSSNR 82
           +     VA  + +L    +   +HRD+++ NILL       + DFG AR ++ D    
Sbjct: 196 ICYSFQVAKGMEFL---ASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYV 250

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3o71_A 3r63_A 3c9w_A* 2y9q_A* 3sa0_A* 1wzy_A* 2e14_A* 1tvo_A* 2ojg_A* 2oji_A* ... Length = 364

 Score = 40.7 bits (96), Expect = 8e-06
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 3/48 (6%)

Query: 34  ALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSSN 81
            L Y+H   + +V+HRD+  +N+LL+   +  + DFG AR+   D  +
Sbjct: 140 GLKYIH---SANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDH 184

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7 Length = 367

 Score = 40.8 bits (96), Expect = 8e-06
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 3/40 (7%)

Query: 34  ALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTAR 73
            L Y+H      ++HRD+   N+ ++ + E  + DFG AR
Sbjct: 140 GLRYIH---AAGIIHRDLKPGNLAVNEDCELKILDFGLAR 176

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* Length = 446

 Score = 40.9 bits (96), Expect = 9e-06
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 2/40 (5%)

Query: 31  VAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFG 70
           +  AL YLH +   +VV+RD+   N++LD +    + DFG
Sbjct: 257 IVSALDYLHSE--KNVVYRDLKLENLMLDKDGHIKITDFG 294

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A Length = 336

 Score = 41.0 bits (95), Expect = 9e-06
 Identities = 11/65 (16%), Positives = 21/65 (32%), Gaps = 2/65 (3%)

Query: 19  LNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVD 78
            +     SI+  +  +L+       L   HRD+   N+LL       +      +   + 
Sbjct: 158 SSLATAKSILHQLTASLAVAEAS--LRFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIP 215

Query: 79  SSNRT 83
           S    
Sbjct: 216 SCGLQ 220

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score = 40.8 bits (96), Expect = 1e-05
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 6/54 (11%)

Query: 26  SIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEAS---VADFGTARLLH 76
            I+K V   ++Y+H     ++VHRD+   NILL+   +     + DFG +    
Sbjct: 125 RIIKQVFSGITYMHK---HNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQ 175

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens} Length = 353

 Score = 40.7 bits (96), Expect = 1e-05
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)

Query: 34  ALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTAR 73
            L Y+H   +  VVHRD+   N+ ++ + E  + DFG AR
Sbjct: 138 GLKYIH---SAGVVHRDLKPGNLAVNEDCELKILDFGLAR 174

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A* Length = 432

 Score = 40.5 bits (95), Expect = 1e-05
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 34  ALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSSNRT 83
             +++H      ++HRD+   N LL+ +    V DFG AR ++ +     
Sbjct: 141 GENFIH---ESGIIHRDLKPANCLLNQDCSVKVCDFGLARTINSEKDTNI 187

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ... Length = 367

 Score = 40.4 bits (95), Expect = 1e-05
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 3/40 (7%)

Query: 34  ALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTAR 73
            L Y+H   +  ++HRD+  +N+ ++ + E  + DFG AR
Sbjct: 144 GLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLAR 180

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii} Length = 458

 Score = 40.6 bits (95), Expect = 1e-05
 Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 34  ALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSSNRT 83
            + Y+H   +  ++HRD+   N L++ +    V DFG AR +    +  +
Sbjct: 168 GVKYVH---SAGILHRDLKPANCLVNQDCSVKVCDFGLARTVDYPENGNS 214

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A* Length = 464

 Score = 40.6 bits (95), Expect = 1e-05
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 3/40 (7%)

Query: 34  ALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTAR 73
            + +LH   +  ++HRD+  +NI++  +    + DFG AR
Sbjct: 176 GIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLAR 212

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II} Length = 388

 Score = 40.4 bits (95), Expect = 1e-05
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 34  ALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSSNRT 83
            + YLH   +  ++HRD+  +NILL+      VADFG +R          
Sbjct: 121 VIKYLH---SGGLLHRDMKPSNILLNAECHVKVADFGLSRSFVNIRRVTN 167

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A* Length = 353

 Score = 40.3 bits (95), Expect = 1e-05
 Identities = 16/50 (32%), Positives = 31/50 (62%), Gaps = 3/50 (6%)

Query: 34  ALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSSNRT 83
           A+  LH     +V+HRD+  +N+L++ N +  V DFG AR++   +++ +
Sbjct: 124 AVKVLH---GSNVIHRDLKPSNLLINSNCDLKVCDFGLARIIDESAADNS 170

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A* Length = 299

 Score = 39.6 bits (93), Expect = 2e-05
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 6/50 (12%)

Query: 26  SIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEAS---VADFGTA 72
            I+KS+  A+ YLH   ++++ HRD+   N+L       +   + DFG A
Sbjct: 121 EIMKSIGEAIQYLH---SINIAHRDVKPENLLYTSKRPNAILKLTDFGFA 167

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ... Length = 371

 Score = 39.7 bits (93), Expect = 2e-05
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 3/40 (7%)

Query: 34  ALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTAR 73
            + +LH   +  ++HRD+  +NI++  +    + DFG AR
Sbjct: 139 GIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLAR 175

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* Length = 327

 Score = 39.5 bits (93), Expect = 3e-05
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 6/54 (11%)

Query: 25  VSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEAS---VADFGTARLL 75
           + ++K +   + YLH     ++VH D+   NILL          + DFG +R +
Sbjct: 134 IRLIKQILEGVYYLH---QNNIVHLDLKPQNILLSSIYPLGDIKIVDFGMSRKI 184

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373

 Score = 39.3 bits (92), Expect = 3e-05
 Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 5/53 (9%)

Query: 25  VSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASV--ADFGTARLL 75
           +  +K +   + ++H    + ++H D+   NIL        +   DFG AR  
Sbjct: 190 ILFMKQICEGIRHMHQ---MYILHLDLKPENILCVNRDAKQIKIIDFGLARRY 239

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* Length = 314

 Score = 39.1 bits (92), Expect = 3e-05
 Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 3/69 (4%)

Query: 11  RDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFG 70
            D  +   L     +S    ++  + YL     + +VHRD+++ NIL+    +  ++DFG
Sbjct: 139 LDHPDERALTMGDLISFAWQISQGMQYLA---EMKLVHRDLAARNILVAEGRKMKISDFG 195

Query: 71  TARLLHVDS 79
            +R ++ + 
Sbjct: 196 LSRDVYEED 204

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 39.4 bits (92), Expect = 3e-05
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 5/53 (9%)

Query: 25  VSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASV--ADFGTARLL 75
           V  ++ V   L ++H     + VH D+   NI+        +   DFG    L
Sbjct: 258 VEYMRQVCKGLCHMH---ENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHL 307

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A Length = 286

 Score = 39.0 bits (91), Expect = 3e-05
 Identities = 7/49 (14%), Positives = 18/49 (36%), Gaps = 3/49 (6%)

Query: 25  VSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTAR 73
           +  ++S+A A    H      V       + + + ++ +  +A   T  
Sbjct: 132 IRAMQSLAAAADAAHRA---GVALSIDHPSRVRVSIDGDVVLAYPATMP 177

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens} Length = 320

 Score = 38.8 bits (91), Expect = 4e-05
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 4/49 (8%)

Query: 34  ALSYLHHDCTLSVVHRDISSNNILLD-LNLEASVADFGTARLLHVDSSN 81
            L Y+H   + +V+HRD+   N+ ++  +L   + DFG AR++    S+
Sbjct: 132 GLKYIH---SANVLHRDLKPANLFINTEDLVLKIGDFGLARIMDPHYSH 177

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A Length = 361

 Score = 38.9 bits (91), Expect = 4e-05
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 5/52 (9%)

Query: 34  ALSYLHHDCTLSVVHRDISSNNILLDLNLEAS--VADFGTARLLHVDSSNRT 83
            +SY H    + + HRD+   N LLD +      + DFG ++   + S  ++
Sbjct: 128 GVSYCHS---MQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKS 176

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score = 38.5 bits (90), Expect = 5e-05
 Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 3/36 (8%)

Query: 26  SIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLN 61
            ++  V   L Y+H     S+VH DI  +NI +   
Sbjct: 119 DLLLQVGRGLRYIHSM---SLVHMDIKPSNIFISRT 151

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 Length = 344

 Score = 38.4 bits (90), Expect = 5e-05
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 25  VSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVD 78
           +     VA  + +L      S VHRD+++ N+L+       + DFG AR +  D
Sbjct: 175 LCFAYQVAKGMEFLE---FKSCVHRDLAARNVLVTHGKVVKICDFGLARDIMSD 225

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343

 Score = 38.4 bits (90), Expect = 6e-05
 Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 3/52 (5%)

Query: 25  VSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH 76
           + I + VA  ++YL        VHRD+++ N L+  N+   +ADFG +R ++
Sbjct: 177 LCIARQVAAGMAYLS---ERKFVHRDLATRNCLVGENMVVKIADFGLSRNIY 225

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387

 Score = 38.5 bits (90), Expect = 6e-05
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 5/62 (8%)

Query: 25  VSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASV--ADFGTARLLHVDSSNR 82
           ++ ++     L ++H     S+VH DI   NI+ +    +SV   DFG A  L+ D   +
Sbjct: 152 INYMRQACEGLKHMH---EHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIVK 208

Query: 83  TL 84
             
Sbjct: 209 VT 210

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A* Length = 373

 Score = 38.4 bits (90), Expect = 7e-05
 Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 3/40 (7%)

Query: 31  VAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFG 70
           +A AL YLH   +L++V+RD+   NILLD      + DFG
Sbjct: 148 IASALGYLH---SLNIVYRDLKPENILLDSQGHIVLTDFG 184

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ... Length = 350

 Score = 38.0 bits (89), Expect = 8e-05
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 3/42 (7%)

Query: 31  VAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTA 72
           +     YLH    L +++RD+   N+L+D      V DFG A
Sbjct: 150 IVLTFEYLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFA 188

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ... Length = 337

 Score = 38.0 bits (89), Expect = 8e-05
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 3/40 (7%)

Query: 31  VAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFG 70
           +  AL YLH   +  VV+RDI   N++LD +    + DFG
Sbjct: 114 IVSALEYLH---SRDVVYRDIKLENLMLDKDGHIKITDFG 150

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7 Length = 355

 Score = 37.7 bits (88), Expect = 1e-04
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 34  ALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSSNRT 83
           AL +LH    L +++RDI   NILLD N    + DFG ++    D + R 
Sbjct: 171 ALEHLH---KLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETERA 217

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* Length = 361

 Score = 37.7 bits (88), Expect = 1e-04
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 7/55 (12%)

Query: 25  VSIVKSVAHALSYLHHDCTLSVVHRDISSNNILL-DLNLEAS---VADFGTARLL 75
            S +K +   ++YLH   T  + H D+   NI+L D N+      + DFG A  +
Sbjct: 118 TSFIKQILDGVNYLH---TKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEI 169

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens} Length = 353

 Score = 37.6 bits (88), Expect = 1e-04
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 3/40 (7%)

Query: 31  VAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFG 70
           +  AL +LH      +++RD+  +N+LLD      +ADFG
Sbjct: 133 IISALMFLH---DKGIIYRDLKLDNVLLDHEGHCKLADFG 169

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A Length = 321

 Score = 37.6 bits (88), Expect = 1e-04
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 7/55 (12%)

Query: 25  VSIVKSVAHALSYLHHDCTLSVVHRDISSNNILL-DLNLEAS---VADFGTARLL 75
            S +K +   ++YLH   T  + H D+   NI+L D N+      + DFG A  +
Sbjct: 118 TSFIKQILDGVNYLH---TKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEI 169

>3g51_A Ribosomal protein S6 kinase alpha-3; N-terminal kinase domain of P90 ribosomal S6 kinase 2, ATP- binding, nucleotide-binding, phosphoprotein; HET: ANP; 1.80A {Mus musculus} PDB: 2z7q_A* 2z7r_A* 2z7s_A* Length = 325

 Score = 37.1 bits (87), Expect = 1e-04
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 3/40 (7%)

Query: 31  VAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFG 70
           +A AL +LH   +L +++RD+   NILLD      + DFG
Sbjct: 135 LALALDHLH---SLGIIYRDLKPENILLDEEGHIKLTDFG 171

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7 Length = 318

 Score = 37.1 bits (87), Expect = 2e-04
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)

Query: 34  ALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTA 72
           AL YLH      +++RD+   NILLD N    + DFG A
Sbjct: 118 ALEYLHS---KDIIYRDLKPENILLDKNGHIKITDFGFA 153

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} Length = 326

 Score = 37.2 bits (87), Expect = 2e-04
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 7/55 (12%)

Query: 25  VSIVKSVAHALSYLHHDCTLSVVHRDISSNNILL-DLNLEAS---VADFGTARLL 75
              +K + + + YLH   +L + H D+   NI+L D N+      + DFG A  +
Sbjct: 117 TEFLKQILNGVYYLH---SLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKI 168

>3pvu_A Beta-adrenergic receptor kinase 1; transferase, serine/threonine-protein kinase, ATP-binding, I membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A* 3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A* 1bak_A Length = 695

 Score = 37.2 bits (86), Expect = 2e-04
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 3/39 (7%)

Query: 34  ALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTA 72
            L ++H      VV+RD+   NILLD +    ++D G A
Sbjct: 304 GLEHMH---NRFVVYRDLKPANILLDEHGHVRISDLGLA 339

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A* Length = 327

 Score = 37.1 bits (87), Expect = 2e-04
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 3/40 (7%)

Query: 31  VAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFG 70
           ++ AL +LH      +++RD+   NI+L+      + DFG
Sbjct: 130 ISMALGHLH---QKGIIYRDLKPENIMLNHQGHVKLTDFG 166

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... Length = 283

 Score = 37.2 bits (87), Expect = 2e-04
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 7/53 (13%)

Query: 27  IVKSVAHALSYLHHDCTLSVVHRDISSNNILL-DLNLEAS---VADFGTARLL 75
            +K +   + YLH   +  + H D+   NI+L D N+      + DFG A  +
Sbjct: 113 FLKQILDGVHYLH---SKRIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHKI 162

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A Length = 674

 Score = 36.9 bits (85), Expect = 2e-04
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 3/40 (7%)

Query: 31  VAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFG 70
           +A  L +L    +  +++RD+  +N++LD      +ADFG
Sbjct: 451 IAIGLFFLQ---SKGIIYRDLKLDNVMLDSEGHIKIADFG 487

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A* Length = 397

 Score = 36.8 bits (85), Expect = 2e-04
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 26  SIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLN 61
            I++ V   L YLH  C   ++H DI   NILL +N
Sbjct: 150 KIIQQVLQGLDYLHTKC--RIIHTDIKPENILLSVN 183

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A* Length = 345

 Score = 36.8 bits (86), Expect = 2e-04
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 3/40 (7%)

Query: 31  VAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFG 70
           ++ AL+YLH      +++RD+  +N+LLD      + D+G
Sbjct: 119 ISLALNYLH---ERGIIYRDLKLDNVLLDSEGHIKLTDYG 155

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus} Length = 396

 Score = 36.6 bits (85), Expect = 3e-04
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 3/40 (7%)

Query: 31  VAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFG 70
           ++ AL+YLH      +++RD+  +N+LLD      + D+G
Sbjct: 162 ISLALNYLH---ERGIIYRDLKLDNVLLDSEGHIKLTDYG 198

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 Length = 321

 Score = 36.4 bits (85), Expect = 3e-04
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 5/53 (9%)

Query: 25  VSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASV--ADFGTARLL 75
           VS V  V  AL +LH     ++ H DI   NI+      +++   +FG AR L
Sbjct: 105 VSYVHQVCEALQFLHS---HNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQL 154

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B Length = 543

 Score = 36.3 bits (84), Expect = 3e-04
 Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 3/37 (8%)

Query: 34  ALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFG 70
            L +LH     ++++RD+   N+LLD +    ++D G
Sbjct: 301 GLEHLH---QRNIIYRDLKPENVLLDDDGNVRISDLG 334

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* Length = 576

 Score = 36.3 bits (84), Expect = 3e-04
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 34  ALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSSNRT 83
            L  LH      +V+RD+   NILLD +    ++D G A  +    + + 
Sbjct: 298 GLEDLH---RERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQTIKG 344

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A* Length = 345

 Score = 36.0 bits (84), Expect = 4e-04
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 3/40 (7%)

Query: 31  VAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFG 70
           +   L +LH   +  +V+RD+  +NILLD +    +ADFG
Sbjct: 127 IILGLQFLH---SKGIVYRDLKLDNILLDKDGHIKIADFG 163

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A* Length = 353

 Score = 36.1 bits (84), Expect = 4e-04
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 3/40 (7%)

Query: 31  VAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFG 70
           +A  L +L    +  +++RD+  +N++LD      +ADFG
Sbjct: 130 IAIGLFFLQ---SKGIIYRDLKLDNVMLDSEGHIKIADFG 166

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A Length = 373

 Score = 36.2 bits (84), Expect = 4e-04
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 12/62 (19%)

Query: 25  VSIVKSVAH----ALSYLHHDCTLSVVHRDISSNNILLDLNLEAS------VADFGTARL 74
           +  VK ++      L Y+H  C   ++H DI   N+L+++           +AD G A  
Sbjct: 130 LIYVKQISKQLLLGLDYMHRRC--GIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACW 187

Query: 75  LH 76
             
Sbjct: 188 YD 189

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3mb7_A* 3mb6_A* 3owj_A* 3owk_A* ... Length = 330

 Score = 36.1 bits (84), Expect = 4e-04
 Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 4/44 (9%)

Query: 34  ALSYLHHDCTLSVVHRDISSNNILLDL-NLEASVADFGTARLLH 76
           AL Y H   ++ ++HRD+  +N+++D  + +  + D+G A   H
Sbjct: 142 ALDYCH---SMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYH 182

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	84
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	99.78
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.78
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	99.77
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	99.76
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	99.75
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	99.75
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	99.75
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	99.74
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.73
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	99.73
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	99.73
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	99.73
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	99.72
4aoj_A	329	High affinity nerve growth factor receptor; transf	99.72
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	99.71
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.71
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.65
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	99.64
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.63
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	99.61
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	99.59
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	99.56
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.56
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	99.55
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	99.55
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	99.55
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	99.54
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	99.54
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	99.54
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	99.54
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	99.53
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	99.53
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	99.53
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	99.53
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	99.53
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	99.53
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	99.53
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	99.52
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	99.52
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	99.52
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	99.52
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	99.52
3q4u_A	301	Activin receptor type-1; structural genomics conso	99.52
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	99.51
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	99.51
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	99.5
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	99.5
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	99.5
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	99.5
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	99.5
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	99.5
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	99.5
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	99.5
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	99.5
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.49
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	99.49
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	99.49
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	99.49
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	99.48
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	99.48
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	99.48
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	99.48
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	99.47
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	99.47
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	99.47
3rp9_A	458	Mitogen-activated protein kinase; structural genom	99.47
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	99.47
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	99.47
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	99.47
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	99.47
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	99.46
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	99.46
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	99.46
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	99.46
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	99.46
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	99.46
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	99.46
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	99.46
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	99.46
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	99.46
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	99.46
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	99.46
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	99.46
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	99.45
3ork_A	311	Serine/threonine protein kinase; structural genomi	99.45
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	99.45
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	99.45
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	99.44
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	99.44
3pls_A	298	Macrophage-stimulating protein receptor; protein k	99.44
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	99.44
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	99.44
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	99.44
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	99.44
3soc_A	322	Activin receptor type-2A; structural genomics cons	99.44
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	99.44
2a19_B	284	Interferon-induced, double-stranded RNA-activated	99.44
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	99.44
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	99.43
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	99.43
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	99.43
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	99.43
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	99.43
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	99.43
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	99.43
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	99.43
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	99.43
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	99.43
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	99.43
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	99.43
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	99.43
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	99.43
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	99.42
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	99.42
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	99.42
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	99.42
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	99.42
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	99.42
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	99.42
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	99.42
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	99.42
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	99.41
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	99.41
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	99.41
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	99.41
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	99.41
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	99.41
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	99.41
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	99.41
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	99.41
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	99.41
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	99.41
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	99.4
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	99.4
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	99.4
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	99.4
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	99.4
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	99.4
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	99.4
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	99.39
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.39
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	99.39
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	99.39
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	99.39
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	99.39
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	99.39
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	99.39
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	99.39
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	99.39
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	99.39
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.39
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	99.39
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	99.39
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	99.39
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	99.39
3o0g_A	292	Cell division protein kinase 5; kinase activator c	99.39
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	99.39
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	99.38
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	99.38
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	99.38
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	99.38
3niz_A	311	Rhodanese family protein; structural genomics, str	99.38
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	99.38
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	99.38
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	99.38
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	99.37
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	99.37
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	99.37
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	99.37
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	99.37
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	99.37
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	99.37
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	99.37
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	99.37
3bhy_A	283	Death-associated protein kinase 3; death associate	99.37
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	99.36
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	99.36
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	99.36
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	99.36
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	99.36
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	99.36
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	99.36
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	99.36
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	99.36
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	99.35
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	99.35
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	99.35
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	99.35
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	99.35
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	99.35
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	99.35
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	99.34
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.34
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	99.33
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	99.33
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	99.33
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	99.32
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	99.32
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	99.32
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	99.32
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	99.31
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	99.31
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	99.31
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	99.3
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	99.3
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	99.3
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	99.29
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	99.29
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	99.29
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	99.29
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	99.29
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	99.29
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	99.29
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	99.29
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	99.29
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	99.29
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	99.29
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	99.28
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	99.28
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	99.28
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	99.28
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	99.27
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	99.27
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	99.26
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	99.26
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	99.26
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.26
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	99.26
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	99.25
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	99.25
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	99.25
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.23
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	99.23
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	99.23
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	99.22
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	99.22
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	99.22
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	99.2
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	99.2
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	99.2
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	99.18
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	99.18
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	99.17
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	99.16
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	99.16
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	99.15
3an0_A	340	Dual specificity mitogen-activated protein kinase;	99.14
3fme_A	290	Dual specificity mitogen-activated protein kinase;	99.12
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	99.08
3uqc_A	286	Probable conserved transmembrane protein; structur	99.04
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.03
2dyl_A	318	Dual specificity mitogen-activated protein kinase	99.02
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	99.0
3aln_A	327	Dual specificity mitogen-activated protein kinase;	98.93
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	98.07
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	96.56
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	96.29
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	96.04
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	94.25
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	92.45
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	92.38
2pyw_A	420	Uncharacterized protein; 5-methylthioribose kinase	91.34
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	91.33
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	90.88
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	90.35
3csv_A	333	Aminoglycoside phosphotransferase; YP_614837.1, ph	89.53
2ppq_A	322	HSK, HK, homoserine kinase; structural genomics, M	89.34
3ats_A	357	Putative uncharacterized protein; hypothetical pro	88.98
1zyl_A	328	Hypothetical protein YIHE; putative protein kinase	84.14
3dxq_A	301	Choline/ethanolamine kinase family protein; NP_106	83.73
3i1a_A	339	Spectinomycin phosphotransferase; protein kinase,	82.99
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	82.7
3c5i_A	369	Choline kinase; choline, kinase, malaria, transfer	82.33
2qg7_A	458	Ethanolamine kinase PV091845; malaria, SGC, struct	81.28
1nw1_A	429	Choline kinase (49.2 KD); phospholipid synthesis,	80.28

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=99.78  E-value=1.1e-18  Score=96.48  Aligned_cols=71  Identities=31%  Similarity=0.536  Sum_probs=65.7

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      |+||+|.+++.+..   .+++..+..++.|++.|+.|+|+.   +++|+|+++.|++++.+..+|+.|||+++.+..
T Consensus       114 ~~gG~L~~~i~~~~---~l~e~~~~~~~~qi~~al~ylH~~---~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~  184 (311)
T 4aw0_A          114 AKNGELLKYIRKIG---SFDETCTRFYTAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLSP  184 (311)
T ss_dssp             CTTEEHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTCEECCT
T ss_pred             CCCCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCCHHHeEEcCCCCEEEEEcCCceecCC
Confidence            56899999998765   699999999999999999999999   999999999999999999999999999988753

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=99.78  E-value=1.3e-18  Score=96.16  Aligned_cols=71  Identities=31%  Similarity=0.557  Sum_probs=63.7

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      |+||+|.++|.....  .+++.....++.|++.|+.|+|+.   +++|+|+++.|++++.+..+|++|||+++...
T Consensus       113 ~~gGsL~~~l~~~~~--~l~~~~~~~i~~qia~gL~yLH~~---~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~  183 (307)
T 3omv_A          113 CEGSSLYKHLHVQET--KFQMFQLIDIARQTAQGMDYLHAK---NIIHRDMKSNNIFLHEGLTVKIGDFGLATVKS  183 (307)
T ss_dssp             CSSCBHHHHHHTSCC--CCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCCSSSEEEETTEEEEECCCSSCBC--
T ss_pred             CCCCCHHHHHhhcCC--CCCHHHHHHHHHHHHHHHHHHHHC---CccCCccCHHHEEECCCCcEEEeeccCceecc
Confidence            579999999976543  589999999999999999999998   99999999999999999999999999997654

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=99.77  E-value=1.8e-18  Score=96.43  Aligned_cols=72  Identities=29%  Similarity=0.455  Sum_probs=63.5

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCC-cEEEcccccceeccCC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNL-EASVADFGTARLLHVD   78 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~i~~~g~~~~~~~~   78 (84)
                      |+||+|.++|++..   .+++..+..++.|++.|+.|+|..   +++|+|+++.|++++.+. .+|+.|||+++.+...
T Consensus       132 ~~gg~L~~~l~~~~---~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~  204 (336)
T 4g3f_A          132 LEGGSLGQLIKQMG---CLPEDRALYYLGQALEGLEYLHTR---RILHGDVKADNVLLSSDGSRAALCDFGHALCLQPD  204 (336)
T ss_dssp             CTTCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCCGGGEEECTTSCCEEECCCTTCEEC---
T ss_pred             cCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CceecccCHHHEEEeCCCCEEEEeeCCCCeEccCC
Confidence            57899999998765   699999999999999999999988   999999999999998776 6999999999876543

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=99.76  E-value=5.9e-18  Score=94.84  Aligned_cols=72  Identities=29%  Similarity=0.452  Sum_probs=64.3

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      |+||+|.++|...... .+++.....++.|++.|+.|+|..   +++|+|+++.|++++.+..+|+.|||+++.+.
T Consensus       105 ~~gg~L~~~i~~~~~~-~~~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~  176 (350)
T 4b9d_A          105 CEGGDLFKRINAQKGV-LFQEDQILDWFVQICLALKHVHDR---KILHRDIKSQNIFLTKDGTVQLGDFGIARVLN  176 (350)
T ss_dssp             CTTCBHHHHHHHTTTC-CCCHHHHHHHHHHHHHHHHHHHHT---TCEETTCCGGGEEECTTCCEEECSTTEESCCC
T ss_pred             CCCCcHHHHHHHcCCC-CCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCCHHHEEECCCCCEEEcccccceeec
Confidence            5789999999765432 578899999999999999999998   99999999999999999999999999998654

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=99.75  E-value=8.5e-18  Score=94.07  Aligned_cols=71  Identities=31%  Similarity=0.484  Sum_probs=64.7

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccCC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVD   78 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~~   78 (84)
                      |+||+|.+++.+.    .+++..+..++.|++.|+.|+|..   +++|+|+++.|++++.+..+|+.|||+++.+...
T Consensus       153 ~~gg~L~~~l~~~----~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~  223 (346)
T 4fih_A          153 LEGGALTDIVTHT----RMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKE  223 (346)
T ss_dssp             CTTEEHHHHHHHS----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECCSS
T ss_pred             CCCCcHHHHHHcC----CCCHHHHHHHHHHHHHHHHHHHHC---CcccccCCHHHEEECCCCCEEEecCcCceecCCC
Confidence            5689999999763    489999999999999999999999   9999999999999999999999999999877543

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=99.75  E-value=2.7e-18  Score=94.73  Aligned_cols=71  Identities=27%  Similarity=0.334  Sum_probs=63.7

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      |+||+|.+++.+..   .+++..+..++.|++.|+.|+|+.   +++|+|+++.|++++.+..+|+.|||+++....
T Consensus       108 ~~gg~L~~~l~~~~---~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~  178 (304)
T 3ubd_A          108 LRGGDLFTRLSKEV---MFTEEDVKFYLAELALALDHLHSL---GIIYRDLKPENILLDEEGHIKLTDFGLSKESID  178 (304)
T ss_dssp             CTTCEEHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECTTSCEEEESSEEEEC---
T ss_pred             CCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCCCHHHeEEcCCCCEEecccccceeccC
Confidence            57899999998765   689999999999999999999999   999999999999999999999999999986543

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=99.75  E-value=1.5e-17  Score=95.12  Aligned_cols=71  Identities=31%  Similarity=0.484  Sum_probs=64.7

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccCC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVD   78 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~~   78 (84)
                      |+||+|.++++..    .+++..+..++.|++.|+.|+|..   +++|+|+++.|++++.++.+|+.|||+++.+...
T Consensus       230 ~~gG~L~~~i~~~----~l~e~~~~~~~~qil~aL~ylH~~---~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~  300 (423)
T 4fie_A          230 LEGGALTDIVTHT----RMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKE  300 (423)
T ss_dssp             CTTEEHHHHHHHS----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSTTTEEECTTCCEEECCCTTCEECCSS
T ss_pred             CCCCcHHHHHhcc----CCCHHHHHHHHHHHHHHHHHHHHC---CeecccCCHHHEEEcCCCCEEEecCccceECCCC
Confidence            5789999999754    489999999999999999999999   9999999999999999999999999999877543

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=99.74  E-value=1.1e-17  Score=92.16  Aligned_cols=74  Identities=22%  Similarity=0.348  Sum_probs=60.7

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      |++|+|.+++.........++.....++.|++.|+.|+|+.   +++|+|+++.|++++.+..+|+.|||+++.+..
T Consensus        97 ~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~ylH~~---~IiHRDlKp~NILl~~~~~vKl~DFGla~~~~~  170 (299)
T 4g31_A           97 CRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLHSK---GLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQ  170 (299)
T ss_dssp             CCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECCCCCC-----
T ss_pred             CCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHC---cCccccCcHHHeEECCCCcEEEccCccceecCC
Confidence            56899999998765432355667888999999999999999   999999999999999999999999999987654

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=99.73  E-value=1.6e-17  Score=91.13  Aligned_cols=70  Identities=24%  Similarity=0.411  Sum_probs=62.4

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCC--eEecCCCCCcEEeCC-CCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLS--VVHRDISSNNILLDL-NLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~-~~~~~i~~~g~~~~~~   76 (84)
                      |+||+|.+++.+..   .+++..+..++.|++.|+.|+|+.   +  ++|+|+++.|++++. +..+|+.|||+++...
T Consensus       111 ~~gg~L~~~l~~~~---~l~~~~~~~~~~qi~~aL~ylH~~---~~~IiHRDlKp~NILl~~~~g~vKl~DFGla~~~~  183 (290)
T 3fpq_A          111 MTSGTLKTYLKRFK---VMKIKVLRSWCRQILKGLQFLHTR---TPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKR  183 (290)
T ss_dssp             CCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHTS---SSCCCCCCCCGGGEEESSTTSCEEECCTTGGGGCC
T ss_pred             CCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CCCEEecccChhheeEECCCCCEEEEeCcCCEeCC
Confidence            57899999998755   689999999999999999999987   6  999999999999974 6789999999997543

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=99.73  E-value=3.7e-17  Score=97.63  Aligned_cols=73  Identities=25%  Similarity=0.290  Sum_probs=66.7

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccCCC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDS   79 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~~~   79 (84)
                      |+||+|..+|.+..   .+++..+..++.|++.|+.|+|..   +++|+|+++.|++++.++.+|++|||++..+....
T Consensus       274 ~~GGdL~~~l~~~~---~l~E~~a~~y~~qIl~aL~yLH~~---gIiHRDLKPeNILld~~G~vKL~DFGlA~~~~~~~  346 (689)
T 3v5w_A          274 MNGGDLHYHLSQHG---VFSEADMRFYAAEIILGLEHMHNR---FVVYRDLKPANILLDEHGHVRISDLGLACDFSKKK  346 (689)
T ss_dssp             CCSCBHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECTTSCEEECCCTTCEECSSCC
T ss_pred             CCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCchHHeEEeCCCCEEecccceeeecCCCC
Confidence            57899999998765   699999999999999999999988   99999999999999999999999999998775443

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=99.73  E-value=1.7e-17  Score=91.68  Aligned_cols=74  Identities=26%  Similarity=0.380  Sum_probs=64.7

Q ss_pred             CCCCcHHHHHhcCCC-------------cccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEc
Q 040123            1 MERGSLFCVLRDDDE-------------AIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVA   67 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~-------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~   67 (84)
                      |++|+|.++|.....             ...+++.....++.|++.|+.|+|+.   +++|+|+++.|++++.+..+|++
T Consensus       111 ~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDLK~~NILl~~~~~~Ki~  187 (308)
T 4gt4_A          111 CSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSH---HVVHKDLATRNVLVYDKLNVKIS  187 (308)
T ss_dssp             CSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEEC
T ss_pred             CCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhC---CCCCCCccccceEECCCCCEEEC
Confidence            578999999975431             12588999999999999999999998   99999999999999999999999


Q ss_pred             ccccceeccC
Q 040123           68 DFGTARLLHV   77 (84)
Q Consensus        68 ~~g~~~~~~~   77 (84)
                      |||+++.+..
T Consensus       188 DFGlar~~~~  197 (308)
T 4gt4_A          188 DLGLFREVYA  197 (308)
T ss_dssp             CSCCBCGGGG
T ss_pred             CcccceeccC
Confidence            9999986543

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=99.73  E-value=9.6e-18  Score=92.38  Aligned_cols=73  Identities=32%  Similarity=0.505  Sum_probs=64.8

Q ss_pred             CCCCcHHHHHhcCC----------CcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccc
Q 040123            1 MERGSLFCVLRDDD----------EAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFG   70 (84)
Q Consensus         1 ~~~g~L~~~l~~~~----------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g   70 (84)
                      |++|+|.++|++..          ....+++.....++.|++.|+.|+|+.   +++|+|+++.|++++.+..+|++|||
T Consensus        97 ~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDlKp~NILl~~~~~~Ki~DFG  173 (299)
T 4asz_A           97 MKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQ---HFVHRDLATRNCLVGENLLVKIGDFG  173 (299)
T ss_dssp             CTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCS
T ss_pred             CCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCccCHhhEEECCCCcEEECCcc
Confidence            57999999998643          123689999999999999999999998   99999999999999999999999999


Q ss_pred             cceecc
Q 040123           71 TARLLH   76 (84)
Q Consensus        71 ~~~~~~   76 (84)
                      +++...
T Consensus       174 la~~~~  179 (299)
T 4asz_A          174 MSRDVY  179 (299)
T ss_dssp             CHHHHT
T ss_pred             cceecC
Confidence            997654

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=99.72  E-value=1.2e-17  Score=93.73  Aligned_cols=75  Identities=28%  Similarity=0.381  Sum_probs=65.4

Q ss_pred             CCCCcHHHHHhcCCC-------------cccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEc
Q 040123            1 MERGSLFCVLRDDDE-------------AIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVA   67 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~-------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~   67 (84)
                      |++|+|.++|++..+             ...+++.....++.|++.|+.|+|+.   +++|+|+++.|++++.+..+||+
T Consensus       151 ~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~---~iiHRDLK~~NILl~~~~~vKi~  227 (353)
T 4ase_A          151 CKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDLAARNILLSEKNVVKIC  227 (353)
T ss_dssp             CTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEEC
T ss_pred             CCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhhC---CeecCccCccceeeCCCCCEEEC
Confidence            578999999986432             12478899999999999999999999   99999999999999999999999


Q ss_pred             ccccceeccCC
Q 040123           68 DFGTARLLHVD   78 (84)
Q Consensus        68 ~~g~~~~~~~~   78 (84)
                      |||+++.+...
T Consensus       228 DFGlar~~~~~  238 (353)
T 4ase_A          228 DFGLARDIYKD  238 (353)
T ss_dssp             CCGGGSCTTTC
T ss_pred             cchhhhhcccC
Confidence            99999876543

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=99.72  E-value=2.8e-17  Score=91.50  Aligned_cols=73  Identities=29%  Similarity=0.433  Sum_probs=60.3

Q ss_pred             CCCCcHHHHHhcCCC------------cccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcc
Q 040123            1 MERGSLFCVLRDDDE------------AIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVAD   68 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~   68 (84)
                      |++|+|.+++++...            ...+++.....++.|++.|+.|+|..   +++|+|+++.|++++.+..+|++|
T Consensus       125 ~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDLKp~NILl~~~~~~Ki~D  201 (329)
T 4aoj_A          125 MRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGL---HFVHRDLATRNCLVGQGLVVKIGD  201 (329)
T ss_dssp             CTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEETTTEEEECC
T ss_pred             CCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhcC---CeecccccHhhEEECCCCcEEEcc
Confidence            579999999986432            12588999999999999999999998   999999999999999999999999


Q ss_pred             cccceecc
Q 040123           69 FGTARLLH   76 (84)
Q Consensus        69 ~g~~~~~~   76 (84)
                      ||+++.+.
T Consensus       202 FGla~~~~  209 (329)
T 4aoj_A          202 FGMSRDIY  209 (329)
T ss_dssp             CC------
T ss_pred             cccceecc
Confidence            99998654

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=99.71  E-value=4.6e-17  Score=88.81  Aligned_cols=69  Identities=28%  Similarity=0.529  Sum_probs=60.4

Q ss_pred             CCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            3 RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         3 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      +|+|.+++.+..   .+++..+..++.|++.|+.|+|+.   +++|+|+++.|++++.+..+|+.|||+++....
T Consensus        96 ~g~L~~~l~~~~---~l~e~~~~~~~~qi~~al~ylH~~---~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~  164 (275)
T 3hyh_A           96 GNELFDYIVQRD---KMSEQEARRFFQQIISAVEYCHRH---KIVHRDLKPENLLLDEHLNVKIADFGLSNIMTD  164 (275)
T ss_dssp             CEEHHHHHHHSC---SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCTTTEEECTTCCEEECCSSCC-----
T ss_pred             CCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CcccccCChHHeEECCCCCEEEeecCCCeecCC
Confidence            689999998765   699999999999999999999999   999999999999999999999999999987654

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=99.71  E-value=1.2e-16  Score=88.09  Aligned_cols=73  Identities=32%  Similarity=0.398  Sum_probs=64.0

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCC-----CCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDC-----TLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      |++|+|.++|+..    .+++.....++.|++.|+.|+|..+     .++++|+|+++.|++++.+..+|++|||+++..
T Consensus        83 ~~~gsL~~~l~~~----~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~  158 (303)
T 3hmm_A           83 HEHGSLFDYLNRY----TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRH  158 (303)
T ss_dssp             CTTCBHHHHHHHC----CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEEE
T ss_pred             CCCCcHHHHHHhC----CCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEeCCCCccc
Confidence            5789999999864    4889999999999999999999652     348999999999999999999999999999876


Q ss_pred             cC
Q 040123           76 HV   77 (84)
Q Consensus        76 ~~   77 (84)
                      ..
T Consensus       159 ~~  160 (303)
T 3hmm_A          159 DS  160 (303)
T ss_dssp             ET
T ss_pred             cC
Confidence            43

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.65  E-value=8.4e-16  Score=90.58  Aligned_cols=69  Identities=23%  Similarity=0.342  Sum_probs=59.2

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccCC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVD   78 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~~   78 (84)
                      ++||+|.++|+...   .++..   .++.|++.++.|+|..   +++|+|+++.||+++.++.+|+.|||+++.....
T Consensus       324 v~G~~L~d~i~~~~---~l~~~---~I~~QIl~AL~ylH~~---GIIHRDIKPeNILL~~dg~vKL~DFGlAr~~~~~  392 (569)
T 4azs_A          324 LPGRLLSDMLAAGE---EIDRE---KILGSLLRSLAALEKQ---GFWHDDVRPWNVMVDARQHARLIDFGSIVTTPQD  392 (569)
T ss_dssp             CCSEEHHHHHHTTC---CCCHH---HHHHHHHHHHHHHHHT---TCEESCCCGGGEEECTTSCEEECCCTTEESCC--
T ss_pred             CCCCcHHHHHHhCC---CCCHH---HHHHHHHHHHHHHHHC---CceeccCchHhEEECCCCCEEEeecccCeeCCCC
Confidence            57899999998765   46554   4689999999999999   9999999999999999999999999999876543

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=99.64  E-value=1.5e-15  Score=85.54  Aligned_cols=68  Identities=26%  Similarity=0.427  Sum_probs=60.6

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCC-CcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLN-LEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~i~~~g~~~~~~~   77 (84)
                      |++|+|.++++      .+++..+..++.|++.|+.|+|+.   +++|+|+++.|++++.+ ..+|+.|||+++....
T Consensus       102 ~~g~~L~~~~~------~l~~~~~~~~~~qll~al~ylH~~---gIiHRDiKPeNiLl~~~~~~~kl~DFGla~~~~~  170 (361)
T 4f9c_A          102 LEHESFLDILN------SLSFQEVREYMLNLFKALKRIHQF---GIVHRDVKPSNFLYNRRLKKYALVDFGLAQGTHD  170 (361)
T ss_dssp             CCCCCHHHHHT------TCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEETTTTEEEECCCTTCEECTT
T ss_pred             CCcccHHHHHc------CCCHHHHHHHHHHHHHHHHHHHHC---CeEeCcCCHHHeEEeCCCCeEEECcCCCCcccCC
Confidence            46899999985      478899999999999999999999   99999999999999766 6899999999986543

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.63  E-value=2.4e-15  Score=88.76  Aligned_cols=73  Identities=26%  Similarity=0.458  Sum_probs=64.0

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCC--CcEEEcccccceeccCC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLN--LEASVADFGTARLLHVD   78 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~i~~~g~~~~~~~~   78 (84)
                      |+||+|.++|....+  .+++..+..++.|++.|+.|+|..   +++|+|+++.|++++.+  ..+|+.|||+++.+...
T Consensus       236 ~~gg~L~~~i~~~~~--~l~e~~~~~~~~qi~~al~ylH~~---~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~~~~  310 (573)
T 3uto_A          236 MSGGELFEKVADEHN--KMSEDEAVEYMRQVCKGLCHMHEN---NYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPK  310 (573)
T ss_dssp             CCCCBHHHHHTCTTS--CEEHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSCCCEEECCCSSCEECCTT
T ss_pred             cCCCcHHHHHHHhCC--CCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCChhhccccCCCCCCEEEeeccceeEccCC
Confidence            578999999975443  589999999999999999999999   99999999999999754  68999999999887543

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=99.61  E-value=2.5e-15  Score=85.48  Aligned_cols=68  Identities=28%  Similarity=0.498  Sum_probs=61.7

Q ss_pred             CCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            3 RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         3 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +|+|.+++.+..   .+++..+..++.|++.|+.|+|+.   +++|+|+++.|++++.+..+|+.|||+++.+.
T Consensus       142 ~g~L~~~i~~~~---~l~~~~~~~~~~qil~al~ylH~~---~iiHRDlKP~NIl~~~~~~~Ki~DFGla~~~~  209 (398)
T 4b99_A          142 ESDLHQIIHSSQ---PLTLEHVRYFLYQLLRGLKYMHSA---QVIHRDLKPSNLLVNENCELKIGDFGMARGLC  209 (398)
T ss_dssp             SEEHHHHHTSSS---CCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTCCEEECCCTTCBCC-
T ss_pred             CCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---cCcCCCcCccccccCCCCCEEEeecceeeecc
Confidence            478999998655   699999999999999999999999   99999999999999999999999999998653

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=99.59  E-value=1.7e-14  Score=82.88  Aligned_cols=72  Identities=29%  Similarity=0.391  Sum_probs=64.6

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      |++|+|.+++.+...  .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++..+..
T Consensus       156 ~~gg~L~~~l~~~~~--~l~e~~~~~~~~qi~~aL~~LH~~---giiHrDLKp~NILl~~~g~vkL~DFGla~~~~~  227 (437)
T 4aw2_A          156 YVGGDLLTLLSKFED--RLPEEMARFYLAEMVIAIDSVHQL---HYVHRDIKPDNILMDMNGHIRLADFGSCLKLME  227 (437)
T ss_dssp             CTTCBHHHHHHTTTT--CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECCT
T ss_pred             CCCCcHHHHHHHccC--CCCHHHHHHHHHHHHHHHHHHHhC---CeEecccCHHHeeEcCCCCEEEcchhhhhhccc
Confidence            468999999987433  589999999999999999999998   999999999999999999999999999976643

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=99.56  E-value=2.8e-14  Score=81.51  Aligned_cols=73  Identities=30%  Similarity=0.382  Sum_probs=64.9

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccCC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVD   78 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~~   78 (84)
                      |++|+|.+++.+...  .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++..+...
T Consensus       143 ~~gg~L~~~l~~~~~--~l~~~~~~~~~~qi~~aL~~LH~~---giiHrDLKp~NILld~~g~vkL~DFGla~~~~~~  215 (412)
T 2vd5_A          143 YVGGDLLTLLSKFGE--RIPAEMARFYLAEIVMAIDSVHRL---GYVHRDIKPDNILLDRCGHIRLADFGSCLKLRAD  215 (412)
T ss_dssp             CCSCBHHHHHHHHSS--CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECCTT
T ss_pred             CCCCcHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHHC---CeeecccCHHHeeecCCCCEEEeechhheeccCC
Confidence            468999999986432  588999999999999999999998   9999999999999999999999999999876543

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.56  E-value=4.6e-14  Score=84.59  Aligned_cols=69  Identities=22%  Similarity=0.380  Sum_probs=63.5

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      +++|+|..++....   .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||+++..
T Consensus       424 ~~gg~L~~~l~~~~---~~~~~~~~~~~~qi~~aL~~LH~~---gIiHrDLKp~NILl~~~g~ikL~DFGla~~~  492 (674)
T 3pfq_A          424 VNGGDLMYHIQQVG---RFKEPHAVFYAAEIAIGLFFLQSK---GIIYRDLKLDNVMLDSEGHIKIADFGMCKEN  492 (674)
T ss_dssp             CCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---SEECCCCCSTTEEECSSSCEEECCCTTCEEC
T ss_pred             cCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CeEeccCChhhEEEcCCCcEEEeecceeecc
Confidence            46899999998755   589999999999999999999998   9999999999999999999999999998864

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=99.55  E-value=4.5e-14  Score=80.05  Aligned_cols=71  Identities=27%  Similarity=0.421  Sum_probs=64.2

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      +++|+|..++....   .+++..+..++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++..+..
T Consensus        97 ~~gg~L~~~l~~~~---~l~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~  167 (384)
T 4fr4_A           97 LLGGDLRYHLQQNV---HFKEETVKLFICELVMALDYLQNQ---RIIHRDMKPDNILLDEHGHVHITDFNIAAMLPR  167 (384)
T ss_dssp             CTTEEHHHHHHTTC---CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECCT
T ss_pred             CCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CceeccCcHHHeEECCCCCEEEeccceeeeccC
Confidence            45889999998754   589999999999999999999998   999999999999999999999999999987643

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=99.55  E-value=2.4e-14  Score=80.28  Aligned_cols=69  Identities=23%  Similarity=0.420  Sum_probs=63.0

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      |++|+|..++.+..   .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++...
T Consensus       106 ~~gg~L~~~l~~~~---~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NILl~~~g~ikL~DFG~a~~~  174 (353)
T 3txo_A          106 VNGGDLMFHIQKSR---RFDEARARFYAAEIISALMFLHDK---GIIYRDLKLDNVLLDHEGHCKLADFGMCKEG  174 (353)
T ss_dssp             CCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCS
T ss_pred             CCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CCcccCCCHHHEEECCCCCEEEccccceeec
Confidence            46899999998754   589999999999999999999998   9999999999999999999999999998753

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=99.55  E-value=3.8e-14  Score=80.59  Aligned_cols=68  Identities=24%  Similarity=0.422  Sum_probs=62.6

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEccccccee
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARL   74 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~   74 (84)
                      +++|+|..++.+..   .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||+++.
T Consensus       135 ~~gg~L~~~l~~~~---~l~~~~~~~~~~qi~~aL~~LH~~---givHrDLKp~NILl~~~g~ikL~DFGla~~  202 (396)
T 4dc2_A          135 VNGGDLMFHMQRQR---KLPEEHARFYSAEISLALNYLHER---GIIYRDLKLDNVLLDSEGHIKLTDYGMCKE  202 (396)
T ss_dssp             CTTCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBC
T ss_pred             CCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CEEeccCCHHHEEECCCCCEEEeecceeee
Confidence            46899999998754   589999999999999999999998   999999999999999999999999999875

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=99.54  E-value=7.2e-14  Score=78.31  Aligned_cols=73  Identities=15%  Similarity=0.222  Sum_probs=62.8

Q ss_pred             CCCCcHHHHHhcCC--CcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCC-----------CCcEEEc
Q 040123            1 MERGSLFCVLRDDD--EAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL-----------NLEASVA   67 (84)
Q Consensus         1 ~~~g~L~~~l~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----------~~~~~i~   67 (84)
                      |++|+|.+++....  ....+++.....++.|++.++.|+|..   +++|+|+++.|++++.           ...+++.
T Consensus       149 ~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH~~---~ivHrDiKp~NIll~~~~~~~~~~~~~~~~~kl~  225 (365)
T 3e7e_A          149 YSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVHDC---EIIHGDIKPDNFILGNGFLEQDDEDDLSAGLALI  225 (365)
T ss_dssp             CCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECGGGTCC------CTTEEEC
T ss_pred             cCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHhhC---CeecCCCCHHHEEecccccCccccccccCCEEEe
Confidence            46899999997421  122589999999999999999999988   9999999999999988           7899999


Q ss_pred             ccccceecc
Q 040123           68 DFGTARLLH   76 (84)
Q Consensus        68 ~~g~~~~~~   76 (84)
                      |||++..+.
T Consensus       226 DFG~a~~~~  234 (365)
T 3e7e_A          226 DLGQSIDMK  234 (365)
T ss_dssp             CCTTCEEGG
T ss_pred             eCchhhhhh
Confidence            999997543

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=99.54  E-value=9.5e-14  Score=76.92  Aligned_cols=70  Identities=34%  Similarity=0.542  Sum_probs=63.6

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++|+|.+++.+..   .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++....
T Consensus        88 ~~gg~L~~~l~~~~---~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~kL~Dfg~a~~~~  157 (318)
T 1fot_A           88 IEGGELFSLLRKSQ---RFPNPVAKFYAAEVCLALEYLHSK---DIIYRDLKPENILLDKNGHIKITDFGFAKYVP  157 (318)
T ss_dssp             CCSCBHHHHHHHTS---SCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECTTSCEEECCCSSCEECS
T ss_pred             CCCCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChheEEEcCCCCEEEeecCcceecC
Confidence            46889999998755   588999999999999999999988   99999999999999999999999999987654

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=99.54  E-value=5.1e-14  Score=79.01  Aligned_cols=69  Identities=22%  Similarity=0.380  Sum_probs=62.9

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      +++|+|.+++.+..   .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++...
T Consensus       103 ~~gg~L~~~l~~~~---~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~vkL~DFG~a~~~  171 (353)
T 2i0e_A          103 VNGGDLMYHIQQVG---RFKEPHAVFYAAEIAIGLFFLQSK---GIIYRDLKLDNVMLDSEGHIKIADFGMCKEN  171 (353)
T ss_dssp             CCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCC
T ss_pred             CCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CEEeccCCHHHEEEcCCCcEEEEeCCccccc
Confidence            46899999998654   589999999999999999999998   9999999999999999999999999998754

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=99.54  E-value=5.3e-14  Score=78.73  Aligned_cols=69  Identities=25%  Similarity=0.454  Sum_probs=62.8

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      +++|+|.+++.+..   .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++...
T Consensus       100 ~~gg~L~~~l~~~~---~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~  168 (345)
T 1xjd_A          100 LNGGDLMYHIQSCH---KFDLSRATFYAAEIILGLQFLHSK---GIVYRDLKLDNILLDKDGHIKIADFGMCKEN  168 (345)
T ss_dssp             CTTCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCC
T ss_pred             CCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCChhhEEECCCCCEEEeEChhhhhc
Confidence            46899999998654   588999999999999999999998   9999999999999999999999999998754

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=99.53  E-value=1.2e-13  Score=76.15  Aligned_cols=75  Identities=21%  Similarity=0.350  Sum_probs=64.9

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccCC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVD   78 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~~   78 (84)
                      +++|+|.+++.........++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++......
T Consensus       143 ~~~~~L~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~  217 (332)
T 3qd2_B          143 CRKENLKDWMNRRCSLEDREHGVCLHIFIQIAEAVEFLHSK---GLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQD  217 (332)
T ss_dssp             CCSSCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEECSCC
T ss_pred             cCCCCHHHHHhcccCccchhhHHHHHHHHHHHHHHHHHHhC---CeeecCCCcccEEEeCCCCEEEeecCcccccccc
Confidence            46789999998766544566677889999999999999998   9999999999999999999999999998876543

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=99.53  E-value=1.3e-13  Score=75.68  Aligned_cols=71  Identities=38%  Similarity=0.702  Sum_probs=63.9

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++|+|.+++.....  .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++..+.
T Consensus        89 ~~~~~L~~~l~~~~~--~~~~~~~~~i~~qi~~al~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~  159 (310)
T 3s95_A           89 IKGGTLRGIIKSMDS--QYPWSQRVSFAKDIASGMAYLHSM---NIIHRDLNSHNCLVRENKNVVVADFGLARLMV  159 (310)
T ss_dssp             CTTCBHHHHHHHCCT--TSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSTTSEEECTTSCEEECCCTTCEECC
T ss_pred             cCCCcHHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCcCeEEECCCCCEEEeecccceecc
Confidence            468899999987543  588999999999999999999998   99999999999999999999999999987654

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=99.53  E-value=4.4e-14  Score=78.51  Aligned_cols=71  Identities=28%  Similarity=0.518  Sum_probs=63.7

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      +++|+|.+++....   .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++.....
T Consensus        96 ~~~~~L~~~l~~~~---~l~~~~~~~~~~qi~~al~~lH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~  166 (328)
T 3fe3_A           96 ASGGEVFDYLVAHG---RMKEKEARSKFRQIVSAVQYCHQK---RIVHRDLKAENLLLDADMNIKIADFGFSNEFTV  166 (328)
T ss_dssp             CTTCBHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECSTTCCGGGSS
T ss_pred             CCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CEeccCCCHHHEEEcCCCCEEEeeccCceecCC
Confidence            46889999997655   588999999999999999999998   999999999999999999999999999876543

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=99.53  E-value=1.2e-13  Score=76.54  Aligned_cols=72  Identities=38%  Similarity=0.609  Sum_probs=63.9

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      +++|+|.+++.....  .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++..+..
T Consensus       132 ~~~~~L~~~l~~~~~--~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~  203 (325)
T 3kul_A          132 MENGSLDTFLRTHDG--QFTIMQLVGMLRGVGAGMRYLSDL---GYVHRDLAARNVLVDSNLVCKVSDFGLSRVLED  203 (325)
T ss_dssp             CTTCBHHHHHHTTTT--CSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCSSCEECC-
T ss_pred             CCCCcHHHHHHhccc--CCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCcceEEECCCCCEEECCCCccccccc
Confidence            468899999976543  588999999999999999999998   999999999999999999999999999887643

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=99.53  E-value=7.3e-14  Score=77.95  Aligned_cols=69  Identities=29%  Similarity=0.406  Sum_probs=62.6

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      +++|+|..++.+..   .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++...
T Consensus        87 ~~gg~L~~~l~~~~---~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~  155 (337)
T 1o6l_A           87 ANGGELFFHLSRER---VFTEERARFYGAEIVSALEYLHSR---DVVYRDIKLENLMLDKDGHIKITDFGLCKEG  155 (337)
T ss_dssp             CTTCBHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCS
T ss_pred             CCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeecCcCCHHHEEECCCCCEEEeeccchhhc
Confidence            46889999988654   588999999999999999999998   9999999999999999999999999998754

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=99.53  E-value=6.9e-14  Score=79.83  Aligned_cols=70  Identities=27%  Similarity=0.378  Sum_probs=63.1

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      |++|+|.+++...    .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++..+..
T Consensus       151 ~~gg~L~~~l~~~----~~~e~~~~~~~~qi~~aL~~LH~~---givHrDLKp~NILl~~~g~ikL~DFG~a~~~~~  220 (410)
T 3v8s_A          151 MPGGDLVNLMSNY----DVPEKWARFYTAEVVLALDAIHSM---GFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNK  220 (410)
T ss_dssp             CTTEEHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECCT
T ss_pred             CCCCcHHHHHHcC----CCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCCHHHeeECCCCCEEEeccceeEeecc
Confidence            4689999999764    488999999999999999999998   999999999999999999999999999976643

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=99.53  E-value=9.1e-14  Score=77.86  Aligned_cols=71  Identities=24%  Similarity=0.375  Sum_probs=64.1

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      +++|+|.+++.+..   .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++.....
T Consensus       123 ~~gg~L~~~l~~~~---~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~kL~DFg~a~~~~~  193 (350)
T 1rdq_E          123 VAGGEMFSHLRRIG---RFSEPHARFYAAQIVLTFEYLHSL---DLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG  193 (350)
T ss_dssp             CTTCBHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECSS
T ss_pred             CCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CcccccCccceEEECCCCCEEEcccccceeccC
Confidence            46899999998754   588999999999999999999998   999999999999999999999999999887643

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=99.52  E-value=8.2e-14  Score=77.90  Aligned_cols=69  Identities=23%  Similarity=0.394  Sum_probs=62.7

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      +++|+|..++.+..   .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||+++..
T Consensus        92 ~~gg~L~~~l~~~~---~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~kL~DFG~a~~~  160 (345)
T 3a8x_A           92 VNGGDLMFHMQRQR---KLPEEHARFYSAEISLALNYLHER---GIIYRDLKLDNVLLDSEGHIKLTDYGMCKEG  160 (345)
T ss_dssp             CCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCGGGCBCS
T ss_pred             CCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEECCCCCEEEEeccccccc
Confidence            46889999998654   589999999999999999999998   9999999999999999999999999998753

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=99.52  E-value=8e-14  Score=78.71  Aligned_cols=69  Identities=30%  Similarity=0.427  Sum_probs=62.6

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      +++|+|..++.+..   .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||+++..
T Consensus       121 ~~gg~L~~~l~~~~---~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~ikL~DFG~a~~~  189 (373)
T 2r5t_A          121 INGGELFYHLQRER---CFLEPRARFYAAEIASALGYLHSL---NIVYRDLKPENILLDSQGHIVLTDFGLCKEN  189 (373)
T ss_dssp             CCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCCBCGGG
T ss_pred             CCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEECCCCCEEEeeCcccccc
Confidence            46899999998654   588999999999999999999998   9999999999999999999999999998753

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=99.52  E-value=5.8e-14  Score=77.68  Aligned_cols=73  Identities=32%  Similarity=0.458  Sum_probs=64.0

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccCC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVD   78 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~~   78 (84)
                      +++|+|.+++.....  .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++..+...
T Consensus        96 ~~~~~L~~~l~~~~~--~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~~  168 (325)
T 3kex_A           96 LPLGSLLDHVRQHRG--ALGPQLLLNWGVQIAKGMYYLEEH---GMVHRNLAARNVLLKSPSQVQVADFGVADLLPPD  168 (325)
T ss_dssp             CTTCBSHHHHHSSGG--GSCTTHHHHHHHHHHHHHHHHHHT---TCCCSCCSSTTEEESSSSCEEECSCSGGGGSCCC
T ss_pred             CCCCCHHHHHHHccc--cCCHHHHHHHHHHHHHHHHHHHhC---CCCCCccchheEEECCCCeEEECCCCcccccCcc
Confidence            457899999986533  578888999999999999999999   9999999999999999999999999999876443

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=99.52  E-value=1.9e-13  Score=76.92  Aligned_cols=72  Identities=26%  Similarity=0.442  Sum_probs=63.2

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCC----cEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNL----EASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~i~~~g~~~~~~   76 (84)
                      +++|+|.+++....   .+++.....++.|++.++.|+|..   +++|+|+++.|+++....    .+++.|||++..+.
T Consensus        97 ~~gg~L~~~l~~~~---~l~~~~~~~i~~qi~~aL~~LH~~---givHrDlkp~NIll~~~~~~~~~vkl~DFG~a~~~~  170 (361)
T 2yab_A           97 VSGGELFDFLAQKE---SLSEEEATSFIKQILDGVNYLHTK---KIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIE  170 (361)
T ss_dssp             CCSCBHHHHHTTCS---CCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCTTSSSCCEEECCCSSCEECC
T ss_pred             CCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEeCCCCCccCEEEEecCCceEcC
Confidence            46899999997654   589999999999999999999998   999999999999997665    79999999998765


Q ss_pred             CC
Q 040123           77 VD   78 (84)
Q Consensus        77 ~~   78 (84)
                      ..
T Consensus       171 ~~  172 (361)
T 2yab_A          171 DG  172 (361)
T ss_dssp             TT
T ss_pred             CC
Confidence            43

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=99.52  E-value=2.2e-13  Score=74.66  Aligned_cols=71  Identities=30%  Similarity=0.523  Sum_probs=63.5

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccCC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVD   78 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~~   78 (84)
                      +++|+|.+++...    .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++......
T Consensus        99 ~~~~~L~~~~~~~----~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~  169 (297)
T 3fxz_A           99 LAGGSLTDVVTET----CMDEGQIAAVCRECLQALEFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPE  169 (297)
T ss_dssp             CTTCBHHHHHHHS----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECCST
T ss_pred             CCCCCHHHHHhhc----CCCHHHHHHHHHHHHHHHHHHHhC---CceeCCCCHHHEEECCCCCEEEeeCCCceecCCc
Confidence            4689999999764    488899999999999999999998   9999999999999999999999999998776543

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=99.52  E-value=1.4e-13  Score=75.14  Aligned_cols=69  Identities=36%  Similarity=0.493  Sum_probs=61.5

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHh--------cCCCCCeEecCCCCCcEEeCCCCcEEEcccccc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLH--------HDCTLSVVHRDISSNNILLDLNLEASVADFGTA   72 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~   72 (84)
                      +++|+|.++++..    .+++.....++.|++.++.|+|        ..   +++|+|+++.|++++.+..+++.|||++
T Consensus        88 ~~~g~L~~~l~~~----~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~---~ivH~Dlkp~Nill~~~~~~kl~Dfg~a  160 (301)
T 3q4u_A           88 HEMGSLYDYLQLT----TLDTVSCLRIVLSIASGLAHLHIEIFGTQGKP---AIAHRDLKSKNILVKKNGQCCIADLGLA  160 (301)
T ss_dssp             CTTCBHHHHHTTC----CBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBC---EEECSCCCGGGEEECTTSCEEECCCTTC
T ss_pred             ccCCCHHHHHhhc----ccCHHHHHHHHHHHHHHHHHHHHhhhhccCCC---CeecCCCChHhEEEcCCCCEEEeeCCCe
Confidence            4578999999643    4889999999999999999999        77   9999999999999999999999999998


Q ss_pred             eecc
Q 040123           73 RLLH   76 (84)
Q Consensus        73 ~~~~   76 (84)
                      ....
T Consensus       161 ~~~~  164 (301)
T 3q4u_A          161 VMHS  164 (301)
T ss_dssp             EEEE
T ss_pred             eecc
Confidence            7554

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=99.51  E-value=9.6e-14  Score=78.89  Aligned_cols=72  Identities=29%  Similarity=0.522  Sum_probs=62.2

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCC---CCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL---NLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~i~~~g~~~~~~   76 (84)
                      |++|+|.+++..... ..+++.....++.|++.++.|+|..   +++|+|+++.|++++.   +..+++.|||++....
T Consensus       141 ~~gg~L~~~l~~~~~-~~l~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~~~~kl~DFG~a~~~~  215 (400)
T 1nxk_A          141 LDGGELFSRIQDRGD-QAFTEREASEIMKSIGEAIQYLHSI---NIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETT  215 (400)
T ss_dssp             CCSEEHHHHHHCC----CCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSTTCCEEECCCTTCEECC
T ss_pred             CCCCcHHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHHC---CccccCcCcceEEEecCCCCccEEEEecccccccC
Confidence            468899999986542 2588999999999999999999998   9999999999999987   6789999999988654

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=99.51  E-value=4.9e-14  Score=78.06  Aligned_cols=72  Identities=26%  Similarity=0.503  Sum_probs=64.1

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      +++|+|.+++.....  .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++..+..
T Consensus        98 ~~~g~L~~~l~~~~~--~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~  169 (327)
T 3poz_A           98 MPFGCLLDYVREHKD--NIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLGA  169 (327)
T ss_dssp             CTTCBHHHHHHHSTT--SCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEETTEEEECCTTHHHHHTT
T ss_pred             cCCCcHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHhhC---CeeCCCCChheEEECCCCCEEEccCcceeEccC
Confidence            467999999987544  588999999999999999999998   999999999999999999999999999876543

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=99.50  E-value=3.7e-13  Score=75.78  Aligned_cols=74  Identities=28%  Similarity=0.452  Sum_probs=63.8

Q ss_pred             CCCCcHHHHHhcCCC-------------cccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEc
Q 040123            1 MERGSLFCVLRDDDE-------------AIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVA   67 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~-------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~   67 (84)
                      +++|+|.+++.....             ...+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.
T Consensus       169 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~kl~  245 (370)
T 2psq_A          169 ASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQ---KCIHRDLAARNVLVTENNVMKIA  245 (370)
T ss_dssp             CTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEEC
T ss_pred             CCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CeeccccchhhEEECCCCCEEEc
Confidence            457899999986532             12478888999999999999999998   99999999999999999999999


Q ss_pred             ccccceeccC
Q 040123           68 DFGTARLLHV   77 (84)
Q Consensus        68 ~~g~~~~~~~   77 (84)
                      |||++..+..
T Consensus       246 DFG~a~~~~~  255 (370)
T 2psq_A          246 DFGLARDINN  255 (370)
T ss_dssp             CCSSCEETTC
T ss_pred             cccCCcccCc
Confidence            9999986543

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=99.50  E-value=1.7e-13  Score=75.57  Aligned_cols=75  Identities=31%  Similarity=0.461  Sum_probs=64.1

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEe----CCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILL----DLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~i~~~g~~~~~~   76 (84)
                      +++|+|.+++........+++.....++.|++.++.|+|..   +++|+|+++.|+++    +....+++.|||++..+.
T Consensus        91 ~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~a~~~~  167 (319)
T 4euu_A           91 CPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLREN---GIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELE  167 (319)
T ss_dssp             CTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEECTTSCEEEEECCCTTCEECC
T ss_pred             CCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEEeccCCCCceEEEccCCCceecC
Confidence            45789999998755433489999999999999999999999   99999999999998    666679999999998765


Q ss_pred             CC
Q 040123           77 VD   78 (84)
Q Consensus        77 ~~   78 (84)
                      ..
T Consensus       168 ~~  169 (319)
T 4euu_A          168 DD  169 (319)
T ss_dssp             TT
T ss_pred             CC
Confidence            43

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=99.50  E-value=1.2e-13  Score=77.92  Aligned_cols=70  Identities=24%  Similarity=0.459  Sum_probs=62.7

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      |++|+|.++++....  .++......++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||+++..
T Consensus       194 ~~~g~L~~~l~~~~~--~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nil~~~~~~~kl~DfG~s~~~  263 (377)
T 3cbl_A          194 VQGGDFLTFLRTEGA--RLRVKTLLQMVGDAAAGMEYLESK---CCIHRDLAARNCLVTEKNVLKISDFGMSREE  263 (377)
T ss_dssp             CTTCBHHHHHHHHGG--GCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCGGGCEEC
T ss_pred             CCCCCHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHHC---CcCCcccCHHHEEEcCCCcEEECcCCCceec
Confidence            468999999986432  588899999999999999999998   9999999999999999999999999998754

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=99.50  E-value=2.9e-13  Score=74.98  Aligned_cols=72  Identities=31%  Similarity=0.424  Sum_probs=63.1

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCC--CCcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL--NLEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~i~~~g~~~~~~~   77 (84)
                      +++|+|.+++.....  .+++.....++.|++.++.|+|..   +++|+|+++.|++++.  +..+++.|||++..+..
T Consensus        83 ~~g~~L~~~l~~~~~--~~~~~~~~~i~~qi~~al~~lH~~---givH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~~  156 (321)
T 1tki_A           83 ISGLDIFERINTSAF--ELNEREIVSYVHQVCEALQFLHSH---NIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKP  156 (321)
T ss_dssp             CCCCBHHHHHTSSSC--CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSCCCEEECCCTTCEECCT
T ss_pred             CCCCCHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHHC---CCCcCCCCHHHEEEccCCCCCEEEEECCCCeECCC
Confidence            467899999976432  588999999999999999999998   9999999999999986  67899999999987643

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=99.50  E-value=2.2e-13  Score=80.56  Aligned_cols=73  Identities=26%  Similarity=0.329  Sum_probs=64.7

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      |+||+|..++...... .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++..+..
T Consensus       266 ~~gg~L~~~l~~~~~~-~l~e~~~~~i~~qIl~aL~yLH~~---gIvHrDLKPeNILld~~g~vKL~DFGla~~~~~  338 (576)
T 2acx_A          266 MNGGDLKFHIYHMGQA-GFPEARAVFYAAEICCGLEDLHRE---RIVYRDLKPENILLDDHGHIRISDLGLAVHVPE  338 (576)
T ss_dssp             CCSCBHHHHHHSSSSC-CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCCTTCEECCT
T ss_pred             CCCCcHHHHHHhcCCC-CCCHHHHHHHHHHHHHHHHHHHHC---CEeccCCchheEEEeCCCCeEEEecccceeccc
Confidence            4689999999865422 488999999999999999999998   999999999999999999999999999987654

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=99.50  E-value=1.3e-13  Score=77.78  Aligned_cols=72  Identities=38%  Similarity=0.624  Sum_probs=58.5

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      +++|+|.+++.....  .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++..+..
T Consensus       128 ~~~~sL~~~l~~~~~--~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~  199 (373)
T 2qol_A          128 MENGSLDSFLRKHDA--QFTVIQLVGMLRGIASGMKYLSDM---GYVHRDLAARNILINSNLVCKVSDFGLGRVLED  199 (373)
T ss_dssp             CTTCBHHHHHHTTTT--CSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCC--------
T ss_pred             CCCCcHHHHHHhCCC--CCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCcceEEEcCCCCEEECcCcccccccc
Confidence            468999999986543  588999999999999999999998   999999999999999999999999999876543

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=99.50  E-value=2e-13  Score=79.19  Aligned_cols=71  Identities=28%  Similarity=0.557  Sum_probs=64.0

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      +++|+|.+++.+..   .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++.....
T Consensus        98 ~~gg~L~~~l~~~~---~l~~~~~~~i~~qi~~aL~~LH~~---givHrDLkp~NIll~~~~~vkL~DFG~a~~~~~  168 (476)
T 2y94_A           98 VSGGELFDYICKNG---RLDEKESRRLFQQILSGVDYCHRH---MVVHRDLKPENVLLDAHMNAKIADFGLSNMMSD  168 (476)
T ss_dssp             CSSEEHHHHTTSSS---SCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCSGGGEEECTTCCEEECCCSSCEECCT
T ss_pred             CCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CCCcccccHHHEEEecCCCeEEEeccchhhccc
Confidence            45889999997654   589999999999999999999988   999999999999999999999999999887654

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=99.50  E-value=1.1e-13  Score=77.56  Aligned_cols=70  Identities=20%  Similarity=0.329  Sum_probs=62.1

Q ss_pred             CCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeC--CCCcEEEcccccceeccC
Q 040123            3 RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLD--LNLEASVADFGTARLLHV   77 (84)
Q Consensus         3 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~i~~~g~~~~~~~   77 (84)
                      +|+|.+++.....  .+++.....++.|++.++.|+|..   +++|+|+++.|++++  .+..+++.|||+++.+..
T Consensus       135 g~~L~~~~~~~~~--~l~~~~~~~i~~qi~~~l~~lH~~---~iiHrDlkp~Nill~~~~~~~~kl~DFG~a~~~~~  206 (364)
T 3op5_A          135 GSDLQKIYEANAK--RFSRKTVLQLSLRILDILEYIHEH---EYVHGDIKASNLLLNYKNPDQVYLVDYGLAYRYCP  206 (364)
T ss_dssp             EEEHHHHHHHTTS--CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEESSCTTCEEECCCTTCEESSG
T ss_pred             CCCHHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHHC---CeEEecCCHHHEEEecCCCCeEEEEECCcceeccc
Confidence            6789999887533  589999999999999999999999   999999999999998  778999999999976543

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=99.49  E-value=4.3e-13  Score=74.34  Aligned_cols=71  Identities=25%  Similarity=0.429  Sum_probs=62.7

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCC----cEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNL----EASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~i~~~g~~~~~~   76 (84)
                      +++|+|.+++....   .+++.....++.|++.++.|+|..   +++|+|+++.|+++....    .+++.|||++..+.
T Consensus        96 ~~~~~L~~~l~~~~---~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~~~~  169 (326)
T 2y0a_A           96 VAGGELFDFLAEKE---SLTEEEATEFLKQILNGVYYLHSL---QIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKID  169 (326)
T ss_dssp             CCSCBHHHHHTTSS---CCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESCSSSSSCCEEECCCTTCEECC
T ss_pred             CCCCCHHHHHHhcC---CcCHHHHHHHHHHHHHHHHHHHHC---CeEcCCCCHHHEEEecCCCCCCCEEEEECCCCeECC
Confidence            45889999997654   588999999999999999999998   999999999999997765    79999999998765


Q ss_pred             C
Q 040123           77 V   77 (84)
Q Consensus        77 ~   77 (84)
                      .
T Consensus       170 ~  170 (326)
T 2y0a_A          170 F  170 (326)
T ss_dssp             T
T ss_pred             C
Confidence            3

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=99.49  E-value=1.1e-13  Score=75.66  Aligned_cols=70  Identities=27%  Similarity=0.430  Sum_probs=62.8

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++|+|.+++....   .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++..+.
T Consensus        93 ~~g~~L~~~l~~~~---~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~  162 (294)
T 4eqm_A           93 IEGPTLSEYIESHG---PLSVDTAINFTNQILDGIKHAHDM---RIVHRDIKPQNILIDSNKTLKIFDFGIAKALS  162 (294)
T ss_dssp             CCSCBHHHHHHHHC---SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCSSSTTC-
T ss_pred             CCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEEeCCCccccc
Confidence            46789999998755   588999999999999999999998   99999999999999999999999999987553

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=99.49  E-value=1.2e-13  Score=79.28  Aligned_cols=69  Identities=28%  Similarity=0.410  Sum_probs=62.1

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhc-CCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHH-DCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      |++|+|..++....   .+++.....++.|++.++.|+|. .   +++|+|+++.|++++.+..+++.|||++...
T Consensus       230 ~~~~~L~~~l~~~~---~~~~~~~~~~~~qi~~aL~~LH~~~---giiHrDlkp~NIll~~~~~~kl~DFG~a~~~  299 (446)
T 4ejn_A          230 ANGGELFFHLSRER---VFSEDRARFYGAEIVSALDYLHSEK---NVVYRDLKLENLMLDKDGHIKITDFGLCKEG  299 (446)
T ss_dssp             CSSCBHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHHHT---CCCCCCCCGGGEEECSSSCEEECCCCCCCTT
T ss_pred             CCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHhhcC---CEEECCCCHHHEEECCCCCEEEccCCCceec
Confidence            46889999987654   58899999999999999999997 7   8999999999999999999999999998754

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=99.48  E-value=1.4e-13  Score=77.09  Aligned_cols=70  Identities=30%  Similarity=0.418  Sum_probs=63.0

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++|+|.+++....   .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++..+.
T Consensus       141 ~~~~~L~~~l~~~~---~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~DfG~a~~~~  210 (355)
T 1vzo_A          141 INGGELFTHLSQRE---RFTEHEVQIYVGEIVLALEHLHKL---GIIYRDIKLENILLDSNGHVVLTDFGLSKEFV  210 (355)
T ss_dssp             CCSCBHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEESCSSEEEECC
T ss_pred             CCCCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCcEEEeeCCCCeecc
Confidence            45789999998654   588999999999999999999998   99999999999999999999999999987653

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=99.48  E-value=2.2e-13  Score=79.18  Aligned_cols=72  Identities=29%  Similarity=0.505  Sum_probs=63.8

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      |++|+|.++++..... .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||+++.+.
T Consensus       298 ~~~g~L~~~l~~~~~~-~~~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~  369 (495)
T 1opk_A          298 MTYGNLLDYLRECNRQ-EVSAVVLLYMATQISSAMEYLEKK---NFIHRNLAARNCLVGENHLVKVADFGLSRLMT  369 (495)
T ss_dssp             CTTCBHHHHHHHSCTT-TSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECGGGCEEECCTTCEECCT
T ss_pred             cCCCCHHHHHHhcCcC-CCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCChhhEEECCCCcEEEeecccceecc
Confidence            4689999999865432 588899999999999999999998   99999999999999999999999999988654

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=99.48  E-value=6.4e-13  Score=78.18  Aligned_cols=75  Identities=23%  Similarity=0.361  Sum_probs=65.2

Q ss_pred             CCCCcHHHHHhcCCC-cccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccCC
Q 040123            1 MERGSLFCVLRDDDE-AIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVD   78 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~~   78 (84)
                      ++||+|..++..... ...+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++..+...
T Consensus       267 ~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH~~---gIvHrDLKP~NILl~~~g~vkL~DFGla~~~~~~  342 (543)
T 3c4z_A          267 MNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQR---NIIYRDLKPENVLLDDDGNVRISDLGLAVELKAG  342 (543)
T ss_dssp             CTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCCTTCEECCTT
T ss_pred             ccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHc---CCcccCCChHHEEEeCCCCEEEeecceeeeccCC
Confidence            468999999986432 22588999999999999999999998   9999999999999999999999999999876543

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=99.48  E-value=2.1e-13  Score=76.95  Aligned_cols=71  Identities=30%  Similarity=0.484  Sum_probs=57.8

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++|+|.++++....  .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||+++.+.
T Consensus       173 ~~~g~L~~~l~~~~~--~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~kL~DFG~a~~~~  243 (373)
T 3c1x_A          173 MKHGDLRNFIRNETH--NPTVKDLIGFGLQVAKGMKFLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMY  243 (373)
T ss_dssp             CTTCBHHHHHHCTTC--CCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCC-------
T ss_pred             CCCCCHHHHHhhccc--CCCHHHHHHHHHHHHHHHHHHHHC---CEecCccchheEEECCCCCEEEeecccccccc
Confidence            457899999986543  477888999999999999999998   99999999999999999999999999987553

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=99.47  E-value=3.8e-13  Score=73.41  Aligned_cols=71  Identities=31%  Similarity=0.496  Sum_probs=62.9

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++|+|.+++.....  .++......++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++..+.
T Consensus       109 ~~~~~L~~~l~~~~~--~~~~~~~~~i~~ql~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~a~~~~  179 (298)
T 3f66_A          109 MKHGDLRNFIRNETH--NPTVKDLIGFGLQVAKGMKYLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMY  179 (298)
T ss_dssp             CTTCBHHHHHHCTTC--CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTCCEEECSCGGGCCCS
T ss_pred             CCCCCHHHHHHhccc--CCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCchheEEECCCCCEEECccccccccc
Confidence            457899999976443  578899999999999999999998   99999999999999999999999999987653

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=99.47  E-value=1.2e-13  Score=75.31  Aligned_cols=72  Identities=25%  Similarity=0.478  Sum_probs=61.9

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      +++|+|.+++.....  .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++.....
T Consensus        95 ~~~~~L~~~l~~~~~--~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~kl~Dfg~~~~~~~  166 (295)
T 3ugc_A           95 LPYGSLRDYLQKHKE--RIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVENENRVKIGDFGLTKVLPQ  166 (295)
T ss_dssp             CTTCBHHHHHHHCGG--GCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCCCSCC----
T ss_pred             CCCCCHHHHHHhccc--ccCHHHHHHHHHHHHHHHHHHhcC---CcccCCCCHhhEEEcCCCeEEEccCcccccccC
Confidence            458899999987543  488999999999999999999998   999999999999999999999999999876543

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=99.47  E-value=5.5e-13  Score=73.86  Aligned_cols=71  Identities=18%  Similarity=0.242  Sum_probs=62.4

Q ss_pred             CCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCc-----EEEcccccceeccC
Q 040123            3 RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLE-----ASVADFGTARLLHV   77 (84)
Q Consensus         3 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~i~~~g~~~~~~~   77 (84)
                      +|+|.+++.....  .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..     +++.|||++..+..
T Consensus        88 ~~~L~~~~~~~~~--~~~~~~~~~i~~qi~~~l~~LH~~---~iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~a~~~~~  162 (330)
T 2izr_A           88 GPSLEDLFDLCDR--TFSLKTVLMIAIQLISRMEYVHSK---NLIYRDVKPENFLIGRPGNKTQQVIHIIDFALAKEYID  162 (330)
T ss_dssp             CCBHHHHHHHTTT--CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECCGGGTCTTSEEECCCTTCEESBC
T ss_pred             CCCHHHHHHHcCC--CCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHeeeccCCCCCCceEEEEEcccceeeec
Confidence            6899999986533  689999999999999999999998   9999999999999987766     99999999987644


Q ss_pred             C
Q 040123           78 D   78 (84)
Q Consensus        78 ~   78 (84)
                      .
T Consensus       163 ~  163 (330)
T 2izr_A          163 P  163 (330)
T ss_dssp             T
T ss_pred             C
Confidence            3

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=99.47  E-value=4.1e-13  Score=77.23  Aligned_cols=68  Identities=22%  Similarity=0.383  Sum_probs=61.9

Q ss_pred             CCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            3 RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         3 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +|+|..++....   .+++..+..++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||+++.+.
T Consensus       140 ~~~L~~~~~~~~---~l~~~~~~~~~~qi~~aL~~LH~~---~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~  207 (458)
T 3rp9_A          140 DSDFKKLFRTPV---YLTELHIKTLLYNLLVGVKYVHSA---GILHRDLKPANCLVNQDCSVKVCDFGLARTVD  207 (458)
T ss_dssp             SEEHHHHHHSSC---CCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTCCEEECCCTTCBCTT
T ss_pred             ccchhhhcccCC---CCCHHHHHHHHHHHHHHHHHHHhC---CcCCCCCChhhEEECCCCCEeecccccchhcc
Confidence            578888887654   589999999999999999999998   99999999999999999999999999998764

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=99.47  E-value=4.1e-13  Score=77.23  Aligned_cols=72  Identities=31%  Similarity=0.457  Sum_probs=63.3

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      |++|+|.++++..... .++......++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||+++...
T Consensus       269 ~~~g~L~~~l~~~~~~-~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~  340 (450)
T 1k9a_A          269 MAKGSLVDYLRSRGRS-VLGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSEDNVAKVSDFGLTKEAS  340 (450)
T ss_dssp             CTTCBHHHHHHHHCTT-TCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTSCEEECCCTTCEECC
T ss_pred             cCCCcHHHHHHhcCCC-CCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCHhhEEECCCCCEEEeeCCCccccc
Confidence            4688999999875432 368889999999999999999998   99999999999999999999999999987543

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=99.47  E-value=4.4e-13  Score=72.24  Aligned_cols=72  Identities=26%  Similarity=0.500  Sum_probs=63.6

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      +++|+|.+++.....  .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++.....
T Consensus        85 ~~~~~L~~~l~~~~~--~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~  156 (268)
T 3sxs_A           85 ISNGCLLNYLRSHGK--GLEPSQLLEMCYDVCEGMAFLESH---QFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLD  156 (268)
T ss_dssp             CTTCBHHHHHHHHGG--GCCHHHHHHHHHHHHHHHHHHHHT---TEEESSCSGGGEEECTTCCEEECCTTCEEECCT
T ss_pred             cCCCcHHHHHHHcCC--CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCcCcceEEECCCCCEEEccCccceecch
Confidence            357899999986532  588999999999999999999998   999999999999999999999999999876543

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=99.47  E-value=1.8e-13  Score=75.86  Aligned_cols=71  Identities=27%  Similarity=0.510  Sum_probs=60.2

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +.+|+|.+++.....  .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++..+.
T Consensus        98 ~~~g~L~~~l~~~~~--~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kL~DfG~a~~~~  168 (327)
T 3lzb_A           98 MPFGCLLDYVREHKD--NIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLG  168 (327)
T ss_dssp             CSSCBHHHHHHHTTT--CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEETTEEEECCTTC-----
T ss_pred             cCCCcHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHhhC---CCcCCCCCHHHEEEcCCCCEEEccCcceeEcc
Confidence            457899999987544  588999999999999999999998   99999999999999998999999999987654

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=99.47  E-value=2e-13  Score=75.61  Aligned_cols=70  Identities=27%  Similarity=0.431  Sum_probs=62.4

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++|+|.+++....   .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++..+.
T Consensus        87 ~~~~~L~~~l~~~~---~~~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~  156 (323)
T 3tki_A           87 CSGGELFDRIEPDI---GMPEPDAQRFFHQLMAGVVYLHGI---GITHRDIKPENLLLDERDNLKISDFGLATVFR  156 (323)
T ss_dssp             CTTEEGGGGSBTTT---BCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTTCEECE
T ss_pred             CCCCcHHHHHhhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CccccccchHHEEEeCCCCEEEEEeeccceec
Confidence            45788988887554   588999999999999999999998   99999999999999999999999999987653

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=99.46  E-value=6.2e-13  Score=76.58  Aligned_cols=71  Identities=24%  Similarity=0.332  Sum_probs=62.5

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeC---CCCcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLD---LNLEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~i~~~g~~~~~~~   77 (84)
                      +++|+|.+++....   .+++.....++.|++.++.|+|..   +++|+|+++.|++++   .+..+++.|||++.....
T Consensus        92 ~~gg~L~~~i~~~~---~~~e~~~~~i~~qil~aL~~lH~~---givHrDlKp~NIll~~~~~~~~vkL~DFG~a~~~~~  165 (444)
T 3soa_A           92 VTGGELFEDIVARE---YYSEADASHCIQQILEAVLHCHQM---GVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEG  165 (444)
T ss_dssp             CBCCBHHHHHHHCS---CCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSSTTEEESBSSTTCCEEECCCSSCBCCCT
T ss_pred             CCCCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEeccCCCCcEEEccCceeEEecC
Confidence            45789999998765   589999999999999999999998   999999999999997   456799999999976653

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=99.46  E-value=1.7e-13  Score=81.46  Aligned_cols=71  Identities=27%  Similarity=0.454  Sum_probs=63.7

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      |++|+|.+++.....  .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||+++.+.
T Consensus       417 ~~~g~L~~~l~~~~~--~l~~~~~~~i~~qi~~~L~~LH~~---~iiHrDlkp~NILl~~~~~vkL~DFGla~~~~  487 (613)
T 2ozo_A          417 AGGGPLHKFLVGKRE--EIPVSNVAELLHQVSMGMKYLEEK---NFVHRNLAARNVLLVNRHYAKISDFGLSKALG  487 (613)
T ss_dssp             CTTCBHHHHHTTCTT--TSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCCSTTTTCC
T ss_pred             CCCCcHHHHHhhccC--CCCHHHHHHHHHHHHHHHHHHHHC---CEEcCcCCHHHEEEcCCCcEEEeeccCccccc
Confidence            468999999976543  588999999999999999999998   99999999999999999999999999987654

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=99.46  E-value=1.2e-12  Score=71.31  Aligned_cols=71  Identities=23%  Similarity=0.249  Sum_probs=61.9

Q ss_pred             CCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCc-----EEEcccccceeccC
Q 040123            3 RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLE-----ASVADFGTARLLHV   77 (84)
Q Consensus         3 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~i~~~g~~~~~~~   77 (84)
                      +++|.+++.....  .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..     +++.|||++.....
T Consensus        89 ~~~L~~~l~~~~~--~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~~~~~  163 (298)
T 1csn_A           89 GPSLEDLLDLCGR--KFSVKTVAMAAKQMLARVQSIHEK---SLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRD  163 (298)
T ss_dssp             CCBHHHHHHHTTT--CCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBC
T ss_pred             CCCHHHHHHHhcc--CCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEeccCCCCCCCeEEEEECcccccccc
Confidence            7899999986543  588999999999999999999988   9999999999999976654     99999999987654


Q ss_pred             C
Q 040123           78 D   78 (84)
Q Consensus        78 ~   78 (84)
                      .
T Consensus       164 ~  164 (298)
T 1csn_A          164 P  164 (298)
T ss_dssp             T
T ss_pred             c
Confidence            3

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=99.46  E-value=2.9e-13  Score=75.04  Aligned_cols=69  Identities=23%  Similarity=0.394  Sum_probs=60.2

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      +++|+|.+++....   .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++...
T Consensus       103 ~~~~~L~~~l~~~~---~~~~~~~~~~~~qi~~al~~lH~~---~ivH~Dlkp~Nill~~~~~~kl~Dfg~~~~~  171 (327)
T 3a62_A          103 LSGGELFMQLEREG---IFMEDTACFYLAEISMALGHLHQK---GIIYRDLKPENIMLNHQGHVKLTDFGLCKES  171 (327)
T ss_dssp             CTTEEHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCTTTEEECTTSCEEECCCSCC---
T ss_pred             CCCCcHHHHHHhCC---CCCHHHHHHHHHHHHHHHHHHHhC---CEEcccCCHHHeEECCCCcEEEEeCCccccc
Confidence            45789999988654   588899999999999999999998   9999999999999999999999999988654

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=99.46  E-value=1.1e-12  Score=72.57  Aligned_cols=70  Identities=33%  Similarity=0.551  Sum_probs=62.6

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      +++|+|.+++...    .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++..+..
T Consensus       124 ~~~~~L~~~l~~~----~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~  193 (321)
T 2c30_A          124 LQGGALTDIVSQV----RLNEEQIATVCEAVLQALAYLHAQ---GVIHRDIKSDSILLTLDGRVKLSDFGFCAQISK  193 (321)
T ss_dssp             CCSCBHHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECCS
T ss_pred             CCCCCHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEECCCCcEEEeeeeeeeeccc
Confidence            4588999988753    488999999999999999999998   999999999999999999999999999877654

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=99.46  E-value=3.9e-13  Score=73.44  Aligned_cols=72  Identities=22%  Similarity=0.491  Sum_probs=63.6

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      +++|+|.+++.....  .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++..+..
T Consensus       107 ~~~~~L~~~l~~~~~--~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~  178 (302)
T 4e5w_A          107 LPSGSLKEYLPKNKN--KINLKQQLKYAVQICKGMDYLGSR---QYVHRDLAARNVLVESEHQVKIGDFGLTKAIET  178 (302)
T ss_dssp             CTTCBHHHHHHHHTT--TCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCCTTCEECCT
T ss_pred             CCCCcHHHHHHhccc--cCCHHHHHHHHHHHHHHHHHhhcC---CcccCCCchheEEEcCCCCEEECcccccccccC
Confidence            357899999965443  588999999999999999999998   999999999999999999999999999877654

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=99.46  E-value=8.6e-13  Score=74.46  Aligned_cols=73  Identities=30%  Similarity=0.450  Sum_probs=63.8

Q ss_pred             CCCCcHHHHHhcCCC-------------cccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEc
Q 040123            1 MERGSLFCVLRDDDE-------------AIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVA   67 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~-------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~   67 (84)
                      +++|+|.+++.....             ...+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.
T Consensus       157 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~  233 (382)
T 3tt0_A          157 ASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASK---KCIHRDLAARNVLVTEDNVMKIA  233 (382)
T ss_dssp             CTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEEC
T ss_pred             cCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCcceEEEcCCCcEEEc
Confidence            457899999986542             12488999999999999999999998   99999999999999999999999


Q ss_pred             ccccceecc
Q 040123           68 DFGTARLLH   76 (84)
Q Consensus        68 ~~g~~~~~~   76 (84)
                      |||++....
T Consensus       234 DFG~a~~~~  242 (382)
T 3tt0_A          234 DFGLARDIH  242 (382)
T ss_dssp             SCSCCCCSS
T ss_pred             ccCcccccc
Confidence            999987654

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=99.46  E-value=2.2e-13  Score=75.08  Aligned_cols=72  Identities=36%  Similarity=0.656  Sum_probs=59.6

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCC--eEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLS--VVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      +++|+|.+++........+++.....++.|++.++.|+|..   +  ++|+|+++.|++++.+..+++.|||++...
T Consensus       116 ~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~  189 (309)
T 3p86_A          116 LSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNR---NPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRLK  189 (309)
T ss_dssp             CTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHHHTS---SSCCCCTTCCGGGEEECTTCCEEECCCC-----
T ss_pred             CCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHcC---CCCEECCCCChhhEEEeCCCcEEECCCCCCccc
Confidence            45789999998754322488999999999999999999988   8  999999999999999999999999988654

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=99.46  E-value=9.1e-14  Score=82.86  Aligned_cols=71  Identities=28%  Similarity=0.481  Sum_probs=64.0

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      |++|+|.+++....   .+++..+..++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||+++.+..
T Consensus       451 ~~~g~L~~~l~~~~---~l~~~~~~~i~~qi~~~L~yLH~~---~iiHrDLkp~NILl~~~~~~kL~DFGla~~~~~  521 (635)
T 4fl3_A          451 AELGPLNKYLQQNR---HVKDKNIIELVHQVSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKISDFGLSKALRA  521 (635)
T ss_dssp             CTTEEHHHHHHHCT---TCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCTTHHHHTTC
T ss_pred             cCCCCHHHHHhhCC---CCCHHHHHHHHHHHHHHHHHHHHC---CEeCCCCChHhEEEeCCCCEEEEEcCCcccccc
Confidence            46899999998654   588999999999999999999998   999999999999999999999999999876543

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=99.46  E-value=5e-13  Score=74.09  Aligned_cols=70  Identities=31%  Similarity=0.500  Sum_probs=60.9

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCC---cEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNL---EASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~i~~~g~~~~~~   76 (84)
                      +++|+|.+++....   .+++.....++.|++.++.|+|..   +++|+|+++.|+++....   .+++.|||++....
T Consensus        88 ~~~~~L~~~l~~~~---~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~  160 (325)
T 3kn6_A           88 LNGGELFERIKKKK---HFSETEASYIMRKLVSAVSHMHDV---GVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKP  160 (325)
T ss_dssp             CCSCBHHHHHHHCS---CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEC----CEEEECCCTTCEECC
T ss_pred             cCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CCeecCCCHHHEEEecCCCcccEEEeccccceecC
Confidence            46789999998764   589999999999999999999998   999999999999996554   79999999987654

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=99.46  E-value=9.7e-13  Score=72.07  Aligned_cols=73  Identities=40%  Similarity=0.617  Sum_probs=63.7

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++|+|.+++........+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++....
T Consensus       112 ~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~  184 (307)
T 2nru_A          112 MPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHEN---HHIHRDIKSANILLDEAFTAKISDFGLARASE  184 (307)
T ss_dssp             CTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEECCCTTCEECC
T ss_pred             cCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhcC---CeecCCCCHHHEEEcCCCcEEEeecccccccc
Confidence            35789999987544333588999999999999999999998   99999999999999999999999999987654

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=99.46  E-value=2.4e-13  Score=77.06  Aligned_cols=75  Identities=31%  Similarity=0.461  Sum_probs=63.5

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEe----CCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILL----DLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~i~~~g~~~~~~   76 (84)
                      +++|+|.+++........+++.....++.|++.++.|+|..   +++|+|+++.|+++    +....+++.|||++....
T Consensus        91 ~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~a~~~~  167 (396)
T 4eut_A           91 CPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLREN---GIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELE  167 (396)
T ss_dssp             CTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEECTTSCEEEEECCGGGCEECC
T ss_pred             CCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHHC---CEEECCcCHHHEEEeecCCCceeEEEecCCCceEcc
Confidence            35789999998654433489999999999999999999999   99999999999998    666679999999998765


Q ss_pred             CC
Q 040123           77 VD   78 (84)
Q Consensus        77 ~~   78 (84)
                      ..
T Consensus       168 ~~  169 (396)
T 4eut_A          168 DD  169 (396)
T ss_dssp             CG
T ss_pred             CC
Confidence            43

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=99.46  E-value=8.5e-13  Score=72.27  Aligned_cols=73  Identities=29%  Similarity=0.507  Sum_probs=63.5

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCC---CCcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL---NLEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~i~~~g~~~~~~~   77 (84)
                      +++|+|.+++....+. .+++.....++.|++.++.|+|..   +++|+|+++.|++++.   +..+++.|||++.....
T Consensus        97 ~~~~~L~~~l~~~~~~-~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~  172 (299)
T 3m2w_A           97 LDGGELFSRIQDRGDQ-AFTEREASEIMKSIGEAIQYLHSI---NIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTG  172 (299)
T ss_dssp             CCSCBHHHHHHHCTTC-CCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSTTCCEEECCCTTCEECTT
T ss_pred             cCCCcHHHHHHhccCC-CCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEEecCCCCCcEEEecccccccccc
Confidence            4578999999875432 588999999999999999999998   9999999999999987   67899999999876543

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=99.45  E-value=1.6e-13  Score=78.99  Aligned_cols=72  Identities=29%  Similarity=0.582  Sum_probs=62.6

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      |++|+|.+++..... ..++......++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||+++...
T Consensus       264 ~~~g~L~~~l~~~~~-~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~  335 (454)
T 1qcf_A          264 MAKGSLLDFLKSDEG-SKQPLPKLIDFSAQIAEGMAFIEQR---NYIHRDLRAANILVSASLVCKIADFGLARVIE  335 (454)
T ss_dssp             CTTCBHHHHHHSHHH-HTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCSGGGEEECTTCCEEECSTTGGGGBC
T ss_pred             cCCCcHHHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCHHHEEECCCCcEEEeeCCCceEcC
Confidence            468999999985422 1477888999999999999999998   99999999999999999999999999987653

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=99.45  E-value=1.7e-13  Score=75.36  Aligned_cols=70  Identities=21%  Similarity=0.489  Sum_probs=60.5

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++|+|.+++....   .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++..+.
T Consensus        98 ~~g~~L~~~l~~~~---~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~a~~~~  167 (311)
T 3ork_A           98 VDGVTLRDIVHTEG---PMTPKRAIEVIADACQALNFSHQN---GIIHRDVKPANIMISATNAVKVMDFGIARAIA  167 (311)
T ss_dssp             CCEEEHHHHHHHHC---SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEETTSCEEECCCSCC----
T ss_pred             CCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CCCcCCCCHHHEEEcCCCCEEEeeccCccccc
Confidence            35789999998654   588999999999999999999998   99999999999999999999999999987654

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=99.45  E-value=9.8e-13  Score=73.94  Aligned_cols=71  Identities=23%  Similarity=0.410  Sum_probs=61.6

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCC---CcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLN---LEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~i~~~g~~~~~~~   77 (84)
                      +++|+|.+++....   .+++.....++.|++.++.|+|..   +++|+|+++.|++++..   ..+++.|||++.....
T Consensus       110 ~~gg~L~~~l~~~~---~~~~~~~~~~~~qi~~al~~lH~~---~ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~~~~~  183 (362)
T 2bdw_A          110 VTGGELFEDIVARE---FYSEADASHCIQQILESIAYCHSN---GIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVND  183 (362)
T ss_dssp             CCSCBHHHHHTTCS---CCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEESCSSTTCCEEECCCTTCBCCTT
T ss_pred             CCCCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCchHHEEEecCCCCCCEEEeecCcceEecC
Confidence            46789999987654   588999999999999999999998   99999999999999754   3599999999876653

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=99.45  E-value=1e-12  Score=73.91  Aligned_cols=71  Identities=38%  Similarity=0.614  Sum_probs=63.7

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      +++|+|.+++....   .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++..+..
T Consensus       182 ~~g~~L~~~l~~~~---~l~~~~~~~i~~qi~~~L~~LH~~---gi~H~Dlkp~NIl~~~~~~ikl~DfG~~~~~~~  252 (365)
T 2y7j_A          182 MRKGELFDYLTEKV---ALSEKETRSIMRSLLEAVSFLHAN---NIVHRDLKPENILLDDNMQIRLSDFGFSCHLEP  252 (365)
T ss_dssp             CTTCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTTCEECCT
T ss_pred             CCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCCEEEEecCcccccCC
Confidence            45789999998654   588999999999999999999998   999999999999999999999999999877654

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=99.44  E-value=9.7e-13  Score=73.08  Aligned_cols=74  Identities=28%  Similarity=0.440  Sum_probs=62.8

Q ss_pred             CCCCcHHHHHhcCCCc--------------------ccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCC
Q 040123            1 MERGSLFCVLRDDDEA--------------------IELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL   60 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~--------------------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   60 (84)
                      +++|+|.+++......                    ..+++.....++.|++.++.|+|..   +++|+|+++.|++++.
T Consensus       131 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIll~~  207 (344)
T 1rjb_A          131 CCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFK---SCVHRDLAARNVLVTH  207 (344)
T ss_dssp             CTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHT---TEEETTCSGGGEEEET
T ss_pred             CCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCChhhEEEcC
Confidence            4578999999865421                    1378888999999999999999998   9999999999999999


Q ss_pred             CCcEEEcccccceeccC
Q 040123           61 NLEASVADFGTARLLHV   77 (84)
Q Consensus        61 ~~~~~i~~~g~~~~~~~   77 (84)
                      +..+++.|||++.....
T Consensus       208 ~~~~kL~Dfg~~~~~~~  224 (344)
T 1rjb_A          208 GKVVKICDFGLARDIMS  224 (344)
T ss_dssp             TTEEEECCCGGGSCGGG
T ss_pred             CCcEEeCCCccCccccc
Confidence            99999999999876543

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=99.44  E-value=2.3e-12  Score=71.11  Aligned_cols=76  Identities=43%  Similarity=0.757  Sum_probs=65.4

Q ss_pred             CCCCcHHHHHhcCCC-cccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDE-AIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++|+|.+++..... ...+++.....++.|++.++.|+|..+..+++|+|+++.|++++.+..+++.|||++....
T Consensus       109 ~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~  185 (326)
T 3uim_A          109 MANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMD  185 (326)
T ss_dssp             CTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEECTTCCEEECCCSSCEECC
T ss_pred             ccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEECCCCCEEeccCccccccC
Confidence            467899999986542 2248899999999999999999997655589999999999999999999999999998664

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=99.44  E-value=6.7e-13  Score=72.35  Aligned_cols=69  Identities=32%  Similarity=0.497  Sum_probs=61.8

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      .+|+|.+++.....  .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++..+
T Consensus       106 ~~~~L~~~~~~~~~--~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~  174 (298)
T 3pls_A          106 CHGDLLQFIRSPQR--NPTVKDLISFGLQVARGMEYLAEQ---KFVHRDLAARNCMLDESFTVKVADFGLARDI  174 (298)
T ss_dssp             TTCBHHHHHHCTTC--CCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTCCEEECCTTSSCTT
T ss_pred             cCCCHHHHHhcccc--CCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCcceEEEcCCCcEEeCcCCCcccc
Confidence            57899999986443  578889999999999999999998   9999999999999999999999999998754

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.44  E-value=5.7e-13  Score=71.87  Aligned_cols=70  Identities=30%  Similarity=0.486  Sum_probs=62.4

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      +++|+|.+++.....  .+++.....++.|++.++.++|..   +++|+|+++.|++++.+..+++.|||++...
T Consensus        87 ~~~~~L~~~l~~~~~--~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~  156 (269)
T 4hcu_A           87 MEHGCLSDYLRTQRG--LFAAETLLGMCLDVCEGMAYLEEA---CVIHRDLAARNCLVGENQVIKVSDFGMTRFV  156 (269)
T ss_dssp             CTTCBHHHHHHTTTT--CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECGGGCEEECCTTGGGGB
T ss_pred             CCCCcHHHHHHhcCc--ccCHHHHHHHHHHHHHHHHHHHhC---CeecCCcchheEEEcCCCCEEeccccccccc
Confidence            457899999976543  588999999999999999999998   9999999999999998889999999998754

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=99.44  E-value=2.6e-13  Score=73.65  Aligned_cols=72  Identities=28%  Similarity=0.412  Sum_probs=56.7

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      +++|+|.+++.....  .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++.....
T Consensus        97 ~~~~~L~~~l~~~~~--~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~  168 (281)
T 1mp8_A           97 CTLGELRSFLQVRKY--SLDLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDFGLSRYMED  168 (281)
T ss_dssp             CTTEEHHHHHHHTTT--TSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECC---------
T ss_pred             CCCCCHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHhC---CeecccccHHHEEECCCCCEEECccccccccCc
Confidence            357899999986543  588999999999999999999998   999999999999999889999999999876543

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=99.44  E-value=1e-12  Score=72.70  Aligned_cols=72  Identities=25%  Similarity=0.478  Sum_probs=64.0

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      +++|+|.+++.....  .+++.....++.|++.++.++|..   +++|+|+++.|++++.+..+++.|||++.....
T Consensus       126 ~~~~~L~~~l~~~~~--~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dikp~NIli~~~~~~kL~Dfg~~~~~~~  197 (326)
T 2w1i_A          126 LPYGSLRDYLQKHKE--RIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVENENRVKIGDFGLTKVLPQ  197 (326)
T ss_dssp             CTTCBHHHHHHHSTT--SSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEEEETTEEEECCCTTCEECCS
T ss_pred             CCCCCHHHHHHhccc--CCCHHHHHHHHHHHHHHHHHHHhC---CEeccCCCcceEEEcCCCcEEEecCcchhhccc
Confidence            357899999987543  588999999999999999999998   999999999999999889999999999887643

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=99.44  E-value=4.6e-13  Score=74.68  Aligned_cols=55  Identities=29%  Similarity=0.462  Sum_probs=51.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123           19 LNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus        19 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++..+.
T Consensus       190 l~~~~~~~~~~ql~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~  244 (359)
T 3vhe_A          190 LTLEHLICYSFQVAKGMEFLASR---KCIHRDLAARNILLSEKNVVKICDFGLARDIY  244 (359)
T ss_dssp             BCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCGGGSCTT
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChhhEEEcCCCcEEEEeccceeeec
Confidence            78889999999999999999999   99999999999999988999999999987654

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=99.44  E-value=1.7e-12  Score=71.76  Aligned_cols=73  Identities=40%  Similarity=0.652  Sum_probs=62.5

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCC-------CCCeEecCCCCCcEEeCCCCcEEEcccccce
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDC-------TLSVVHRDISSNNILLDLNLEASVADFGTAR   73 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~   73 (84)
                      +++|+|.++++..    .+++.....++.|++.++.|+|..+       ..+++|+|+++.|++++.+..+++.|||++.
T Consensus       104 ~~~g~L~~~l~~~----~~~~~~~~~i~~qi~~al~~LH~~~~~l~~~~~~~ivH~Dlkp~Nill~~~~~~kL~DFg~a~  179 (322)
T 3soc_A          104 HEKGSLSDFLKAN----VVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLAL  179 (322)
T ss_dssp             CTTCBHHHHHHHC----CBCHHHHHHHHHHHHHHHHHHTCCEEEETTEEECEEECSCCSGGGEEECTTCCEEECCCTTCE
T ss_pred             CCCCCHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHHhhccccccccCCCEEeCCCChHhEEECCCCeEEEccCCccc
Confidence            4578999999764    4889999999999999999999531       1279999999999999999999999999997


Q ss_pred             eccC
Q 040123           74 LLHV   77 (84)
Q Consensus        74 ~~~~   77 (84)
                      .+..
T Consensus       180 ~~~~  183 (322)
T 3soc_A          180 KFEA  183 (322)
T ss_dssp             EECT
T ss_pred             cccc
Confidence            6644

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=99.44  E-value=1e-12  Score=72.04  Aligned_cols=74  Identities=27%  Similarity=0.424  Sum_probs=63.1

Q ss_pred             CCCCcHHHHHhcCCC---------------------cccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeC
Q 040123            1 MERGSLFCVLRDDDE---------------------AIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLD   59 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~---------------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~   59 (84)
                      +++|+|.+++.....                     ...+++.....++.|++.++.|+|..   +++|+|+++.|++++
T Consensus       108 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dikp~NIli~  184 (314)
T 2ivs_A          108 AKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEM---KLVHRDLAARNILVA  184 (314)
T ss_dssp             CTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEE
T ss_pred             cCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHHHC---CCcccccchheEEEc
Confidence            357899999886432                     12378889999999999999999998   999999999999999


Q ss_pred             CCCcEEEcccccceeccC
Q 040123           60 LNLEASVADFGTARLLHV   77 (84)
Q Consensus        60 ~~~~~~i~~~g~~~~~~~   77 (84)
                      .+..+++.|||++.....
T Consensus       185 ~~~~~kl~Dfg~~~~~~~  202 (314)
T 2ivs_A          185 EGRKMKISDFGLSRDVYE  202 (314)
T ss_dssp             TTTEEEECCCTTCEECTT
T ss_pred             CCCCEEEccccccccccc
Confidence            999999999999876543

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=99.44  E-value=1.1e-12  Score=71.05  Aligned_cols=73  Identities=19%  Similarity=0.397  Sum_probs=63.4

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      +++|+|.+++..... ..+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++.....
T Consensus       102 ~~~~~L~~~l~~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~  174 (284)
T 2a19_B          102 CDKGTLEQWIEKRRG-EKLDKVLALELFEQITKGVDYIHSK---KLINRDLKPSNIFLVDTKQVKIGDFGLVTSLKN  174 (284)
T ss_dssp             CCSCBHHHHHHHGGG-SCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCCTTCEESSC
T ss_pred             cCCCCHHHHHhhccC-CCCCHHHHHHHHHHHHHHHHHHHhC---CeeeccCCHHHEEEcCCCCEEECcchhheeccc
Confidence            357899999975432 2588999999999999999999998   999999999999999999999999999877654

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=99.44  E-value=1.5e-12  Score=72.49  Aligned_cols=69  Identities=26%  Similarity=0.465  Sum_probs=62.0

Q ss_pred             CcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccCC
Q 040123            4 GSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVD   78 (84)
Q Consensus         4 g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~~   78 (84)
                      ++|.+++....   .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++..+...
T Consensus       115 ~~l~~~~~~~~---~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~Dfg~a~~~~~~  183 (335)
T 3dls_A          115 LDLFAFIDRHP---RLDEPLASYIFRQLVSAVGYLRLK---DIIHRDIKDENIVIAEDFTIKLIDFGSAAYLERG  183 (335)
T ss_dssp             CBHHHHHHTCC---CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTCEECCTT
T ss_pred             ccHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CeEEeccCHHHEEEcCCCcEEEeecccceECCCC
Confidence            38999988654   589999999999999999999998   9999999999999999999999999999876543

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=99.43  E-value=1.8e-12  Score=70.52  Aligned_cols=71  Identities=18%  Similarity=0.313  Sum_probs=62.4

Q ss_pred             CCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEe---CCCCcEEEcccccceeccCC
Q 040123            3 RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILL---DLNLEASVADFGTARLLHVD   78 (84)
Q Consensus         3 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~i~~~g~~~~~~~~   78 (84)
                      +|+|.+++.....  .+++.....++.|++.++.|+|..   +++|+|+++.|+++   +.+..+++.|||++......
T Consensus        88 ~~~L~~~~~~~~~--~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a~~~~~~  161 (296)
T 4hgt_A           88 GPSLEDLFNFCSR--KFSLKTVLLLADQMISRIEYIHSK---NFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDA  161 (296)
T ss_dssp             CCBHHHHHHHTTS--CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECCGGGTTCEEECCCTTCEECBCT
T ss_pred             CCCHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeeeeccCCCCeEEEecCccceeccCc
Confidence            6899999875443  588999999999999999999999   99999999999999   67788999999999876543

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=99.43  E-value=2.1e-12  Score=72.14  Aligned_cols=71  Identities=27%  Similarity=0.443  Sum_probs=61.1

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCC----CcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLN----LEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~i~~~g~~~~~~   76 (84)
                      +++|+|.+++....   .+++.....++.|++.++.|+|..   +++|+|+++.|+++...    ..+++.|||++..+.
T Consensus        98 ~~gg~L~~~i~~~~---~~~~~~~~~~~~qi~~al~~lH~~---givHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~~~~  171 (342)
T 2qr7_A           98 MKGGELLDKILRQK---FFSEREASAVLFTITKTVEYLHAQ---GVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLR  171 (342)
T ss_dssp             CCSCBHHHHHHTCT---TCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESSSSCSGGGEEECCCTTCEECB
T ss_pred             CCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CcEeccCCHHHEEEecCCCCcCeEEEEECCCcccCc
Confidence            46889999998654   589999999999999999999998   99999999999998433    248999999998764


Q ss_pred             C
Q 040123           77 V   77 (84)
Q Consensus        77 ~   77 (84)
                      .
T Consensus       172 ~  172 (342)
T 2qr7_A          172 A  172 (342)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=99.43  E-value=7.5e-13  Score=71.82  Aligned_cols=70  Identities=29%  Similarity=0.503  Sum_probs=62.4

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      +++|+|.+++.....  .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++...
T Consensus       101 ~~~~~L~~~l~~~~~--~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~  170 (283)
T 3gen_A          101 MANGCLLNYLREMRH--RFQTQQLLEMCKDVCEAMEYLESK---QFLHRDLAARNCLVNDQGVVKVSDFGLSRYV  170 (283)
T ss_dssp             CTTCBHHHHHHCGGG--CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCSGGGEEECTTSCEEECSTTGGGGB
T ss_pred             cCCCcHHHHHHHhcc--CCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCccceEEEcCCCCEEEccccccccc
Confidence            357899999976433  588999999999999999999998   9999999999999999999999999998754

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=99.43  E-value=1.7e-12  Score=71.70  Aligned_cols=71  Identities=27%  Similarity=0.448  Sum_probs=62.6

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCC----cEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNL----EASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~i~~~g~~~~~~   76 (84)
                      +++++|.+++....   .+++.....++.|++.++.|+|..   +++|+|+++.|+++..+.    .+++.|||++....
T Consensus        97 ~~~~~L~~~l~~~~---~~~~~~~~~i~~qi~~aL~~lH~~---~ivH~dikp~NIl~~~~~~~~~~~kl~Dfg~~~~~~  170 (321)
T 2a2a_A           97 VSGGELFDFLAQKE---SLSEEEATSFIKQILDGVNYLHTK---KIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIE  170 (321)
T ss_dssp             CCSCBHHHHHHTCS---CEEHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCTTSSSCCEEECCCTTCEECC
T ss_pred             CCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCChHHEEEecCCCCcCCEEEccCccceecC
Confidence            35789999998654   588999999999999999999998   999999999999998776    79999999987765


Q ss_pred             C
Q 040123           77 V   77 (84)
Q Consensus        77 ~   77 (84)
                      .
T Consensus       171 ~  171 (321)
T 2a2a_A          171 D  171 (321)
T ss_dssp             T
T ss_pred             c
Confidence            4

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=99.43  E-value=7.8e-13  Score=75.74  Aligned_cols=69  Identities=23%  Similarity=0.381  Sum_probs=61.4

Q ss_pred             CCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            3 RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         3 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      +|+|.++++...   .+++.....++.|++.|+.|+|+.   +++|+|+++.|++++.+..+++.|||+++....
T Consensus       113 ~~~L~~~~~~~~---~l~~~~~~~i~~qil~aL~~LH~~---givHrDlkp~NILl~~~~~~kL~DFGla~~~~~  181 (432)
T 3n9x_A          113 DSDLKKLFKTPI---FLTEEHIKTILYNLLLGENFIHES---GIIHRDLKPANCLLNQDCSVKVCDFGLARTINS  181 (432)
T ss_dssp             SEEHHHHHHSSC---CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEEC--
T ss_pred             CcCHHHHHhccC---CCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCHHHeEECCCCCEEEccCCCcccccc
Confidence            468888887654   589999999999999999999999   999999999999999999999999999987643

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=99.43  E-value=6.3e-13  Score=73.22  Aligned_cols=70  Identities=24%  Similarity=0.221  Sum_probs=61.5

Q ss_pred             CCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            3 RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         3 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      +|+|.+++.....  .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++.....
T Consensus       140 ~~~L~~~~~~~~~--~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kl~DFG~a~~~~~  209 (311)
T 3p1a_A          140 GPSLQQHCEAWGA--SLPEAQVWGYLRDTLLALAHLHSQ---GLVHLDVKPANIFLGPRGRCKLGDFGLLVELGT  209 (311)
T ss_dssp             CCBHHHHHHHHCS--CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECGGGCEEECCCTTCEECC-
T ss_pred             CCCHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEECCCCCEEEccceeeeeccc
Confidence            5788888876543  589999999999999999999998   999999999999999999999999999876543

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=99.43  E-value=2.3e-12  Score=71.32  Aligned_cols=73  Identities=29%  Similarity=0.487  Sum_probs=62.2

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCC------CCCeEecCCCCCcEEeCCCCcEEEccccccee
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDC------TLSVVHRDISSNNILLDLNLEASVADFGTARL   74 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~   74 (84)
                      +++|+|.+++....    .++.....++.|++.++.|+|...      ..+++|+|+++.|++++.+..+++.|||++..
T Consensus        94 ~~~g~L~~~l~~~~----~~~~~~~~i~~qi~~~L~~LH~~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kL~DFG~a~~  169 (336)
T 3g2f_A           94 YPNGSLXKYLSLHT----SDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGLSMR  169 (336)
T ss_dssp             CTTCBHHHHHHHCC----BCHHHHHHHHHHHHHHHHHHHCCBCCGGGCBCCEECSSCSGGGEEECTTSCEEECCCTTCEE
T ss_pred             CCCCcHHHHHhhcc----cchhHHHHHHHHHHHHHHHHHhhhccccccccceeecccccceEEEcCCCcEEEeeccceee
Confidence            45889999997653    578888899999999999999652      22899999999999999999999999999987


Q ss_pred             ccC
Q 040123           75 LHV   77 (84)
Q Consensus        75 ~~~   77 (84)
                      +..
T Consensus       170 ~~~  172 (336)
T 3g2f_A          170 LTG  172 (336)
T ss_dssp             CSS
T ss_pred             ccc
Confidence            653

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=99.43  E-value=1.6e-12  Score=73.73  Aligned_cols=72  Identities=25%  Similarity=0.447  Sum_probs=62.2

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCC--CCcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL--NLEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~i~~~g~~~~~~~   77 (84)
                      +++|+|.+++.....  .+++.....++.|++.++.|+|..   +++|+|+++.|++++.  ...+++.|||++..+..
T Consensus       130 ~~gg~L~~~l~~~~~--~l~~~~~~~i~~qi~~aL~~LH~~---givHrDlkp~NIll~~~~~~~vkL~DFG~a~~~~~  203 (387)
T 1kob_A          130 LSGGELFDRIAAEDY--KMSEAEVINYMRQACEGLKHMHEH---SIVHLDIKPENIMCETKKASSVKIIDFGLATKLNP  203 (387)
T ss_dssp             CCCCBHHHHTTCTTC--CBCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSTTCCCEEECCCTTCEECCT
T ss_pred             CCCCcHHHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHHhC---CeeecccchHHeEEecCCCCceEEEecccceecCC
Confidence            468899999876432  588999999999999999999998   9999999999999974  46799999999987654

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=99.43  E-value=7.1e-13  Score=73.97  Aligned_cols=69  Identities=29%  Similarity=0.549  Sum_probs=61.9

Q ss_pred             CCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            3 RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         3 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      +|+|.+++....   .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++.....
T Consensus        92 ~g~l~~~l~~~~---~l~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~kl~DFG~s~~~~~  160 (336)
T 3h4j_B           92 GGELFDYIVEKK---RMTEDEGRRFFQQIICAIEYCHRH---KIVHRDLKPENLLLDDNLNVKIADFGLSNIMTD  160 (336)
T ss_dssp             CEEHHHHHHHHC---SCCHHHHHHHHHHHHHHHHHHHHH---TCCCCCCSTTTEEECTTCCEEECCSSCTBTTTT
T ss_pred             CCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCchhhEEEcCCCCEEEEEeccceeccC
Confidence            578888887654   588999999999999999999999   999999999999999999999999999876543

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.43  E-value=6.9e-13  Score=73.66  Aligned_cols=72  Identities=38%  Similarity=0.619  Sum_probs=59.9

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      +++|+|.+++.....  .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++.....
T Consensus       128 ~~~~~L~~~l~~~~~--~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~  199 (333)
T 1mqb_A          128 MENGALDKFLREKDG--EFSVLQLVGMLRGIAAGMKYLANM---NYVHRDLAARNILVNSNLVCKVSDFGLSRVLED  199 (333)
T ss_dssp             CTTEEHHHHHHHTTT--CSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCCCC------
T ss_pred             CCCCcHHHHHHhCCC--CCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChheEEECCCCcEEECCCCcchhhcc
Confidence            357899999986543  588999999999999999999998   999999999999999999999999999876543

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=99.43  E-value=1.5e-13  Score=76.30  Aligned_cols=68  Identities=22%  Similarity=0.255  Sum_probs=57.4

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHh-cCCCCCeEecCCCCCcEEeCCCC------------------
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLH-HDCTLSVVHRDISSNNILLDLNL------------------   62 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~------------------   62 (84)
                      ++|++.+.+.+.    .+++..+..++.|++.|+.|+| ..   +++|+|+++.|++++.+.                  
T Consensus       145 ~~g~ll~~~~~~----~~~~~~~~~i~~qi~~aL~~lH~~~---~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~  217 (336)
T 2vuw_A          145 FGGIDLEQMRTK----LSSLATAKSILHQLTASLAVAEASL---RFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSC  217 (336)
T ss_dssp             CCCEETGGGTTT----CCCHHHHHHHHHHHHHHHHHHHHHH---CCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECT
T ss_pred             CCCccHHHHHhc----CCCHHHHHHHHHHHHHHHHHHHHhC---CEeECCCCHHHEEEeccCCcceeeeccCccccccCC
Confidence            466665555431    4789999999999999999999 88   999999999999998765                  


Q ss_pred             --cEEEcccccceecc
Q 040123           63 --EASVADFGTARLLH   76 (84)
Q Consensus        63 --~~~i~~~g~~~~~~   76 (84)
                        .+++.|||+++...
T Consensus       218 ~~~vkL~DFG~a~~~~  233 (336)
T 2vuw_A          218 GLQVSIIDYTLSRLER  233 (336)
T ss_dssp             TEEEEECCCTTCBEEE
T ss_pred             CceEEEeeccccEecC
Confidence              89999999998654

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=99.43  E-value=2.1e-12  Score=69.88  Aligned_cols=71  Identities=27%  Similarity=0.396  Sum_probs=62.4

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEe---CCCCcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILL---DLNLEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~i~~~g~~~~~~~   77 (84)
                      +++++|.+++....   .+++.....++.|++.++.|+|..   +++|+|+++.|+++   +.+..+++.|||++..+..
T Consensus        88 ~~~~~L~~~~~~~~---~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~~~  161 (277)
T 3f3z_A           88 CTGGELFERVVHKR---VFRESDAARIMKDVLSAVAYCHKL---NVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFKP  161 (277)
T ss_dssp             CCSCBHHHHHHHHC---SCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSTTCCEEECCCTTCEECCT
T ss_pred             cCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCCHHHEEEecCCCCCcEEEEecccceeccC
Confidence            35789998887654   588999999999999999999998   99999999999999   6778899999999876654

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=99.43  E-value=1.9e-12  Score=70.62  Aligned_cols=71  Identities=31%  Similarity=0.519  Sum_probs=63.5

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      +++|+|.+++....   .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++..+..
T Consensus       106 ~~~~~L~~~l~~~~---~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~  176 (298)
T 1phk_A          106 MKKGELFDYLTEKV---TLSEKETRKIMRALLEVICALHKL---NIVHRDLKPENILLDDDMNIKLTDFGFSCQLDP  176 (298)
T ss_dssp             CTTCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTTCEECCT
T ss_pred             cCCCcHHHHHhccC---CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCcceEEEcCCCcEEEecccchhhcCC
Confidence            35789999998654   588999999999999999999998   999999999999999999999999999877643

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=99.43  E-value=8.7e-13  Score=71.90  Aligned_cols=71  Identities=28%  Similarity=0.481  Sum_probs=63.4

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      +++++|.+++....   .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++.....
T Consensus        99 ~~~~~L~~~l~~~~---~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~  169 (291)
T 1xbb_A           99 AELGPLNKYLQQNR---HVKDKNIIELVHQVSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKISDFGLSKALRA  169 (291)
T ss_dssp             CTTEEHHHHHHHCT---TCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCCTTCEECCT
T ss_pred             CCCCCHHHHHHhCc---CCCHHHHHHHHHHHHHHHHHHHhC---CeEcCCCCcceEEEeCCCcEEEccCCcceeecc
Confidence            35789999998754   588999999999999999999998   999999999999999999999999999876643

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=99.42  E-value=6.3e-13  Score=73.51  Aligned_cols=71  Identities=28%  Similarity=0.497  Sum_probs=63.3

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++|+|.+++.....  .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++....
T Consensus       108 ~~~~~L~~~l~~~~~--~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~  178 (327)
T 3lxl_A          108 LPSGCLRDFLQRHRA--RLDASRLLLYSSQICKGMEYLGSR---RCVHRDLAARNILVESEAHVKIADFGLAKLLP  178 (327)
T ss_dssp             CTTCBHHHHHHHHGG--GCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCGGGCEECC
T ss_pred             cCCCCHHHHHHhccc--CCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCChhhEEECCCCCEEEcccccceecc
Confidence            358899999986433  588999999999999999999998   99999999999999999999999999988654

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=99.42  E-value=2.1e-12  Score=71.25  Aligned_cols=70  Identities=26%  Similarity=0.470  Sum_probs=62.7

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      +++|+|.+++...    .+++.....++.|++.++.++|..   +++|+|+++.|++++.+..+++.|||++.....
T Consensus       117 ~~~~~L~~~l~~~----~~~~~~~~~i~~~l~~~l~~LH~~---~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~  186 (318)
T 3lxp_A          117 VPLGSLRDYLPRH----SIGLAQLLLFAQQICEGMAYLHAQ---HYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPE  186 (318)
T ss_dssp             CTTCBHHHHGGGS----CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCGGGCEECCT
T ss_pred             ccCCcHHHHHhhC----CCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCchheEEEcCCCCEEECCccccccccc
Confidence            3578999999764    388899999999999999999999   999999999999999999999999999887654

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=99.42  E-value=2.1e-12  Score=70.88  Aligned_cols=70  Identities=27%  Similarity=0.427  Sum_probs=61.8

Q ss_pred             CCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            3 RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         3 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +|+|.+++...... .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++....
T Consensus       102 ~~~L~~~~~~~~~~-~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~  171 (308)
T 3g33_A          102 DQDLRTYLDKAPPP-GLPAETIKDLMRQFLRGLDFLHAN---CIVHRDLKPENILVTSGGTVKLADFGLARIYS  171 (308)
T ss_dssp             CCBHHHHHHTCCTT-CSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCTTTEEECTTSCEEECSCSCTTTST
T ss_pred             hcCHHHHHhhccCC-CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEcCCCCEEEeeCccccccC
Confidence            46899988865432 489999999999999999999999   99999999999999999999999999987654

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=99.42  E-value=2.8e-12  Score=70.74  Aligned_cols=73  Identities=37%  Similarity=0.634  Sum_probs=62.8

Q ss_pred             CCCCcHHHHHhcCCC-cccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDE-AIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++|+|.+++..... ...+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++....
T Consensus       117 ~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~  190 (321)
T 2qkw_B          117 MENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTR---AIIHRDVKSINILLDENFVPKITDFGISKKGT  190 (321)
T ss_dssp             CTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCSTTEEECTTCCEEECCCTTCEECS
T ss_pred             CCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhcCC---CeecCCCCHHHEEECCCCCEEEeecccccccc
Confidence            457899988875432 22488899999999999999999998   99999999999999999999999999987644

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=99.42  E-value=7.2e-13  Score=74.43  Aligned_cols=69  Identities=22%  Similarity=0.352  Sum_probs=59.0

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCc--EEEcccccceec
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLE--ASVADFGTARLL   75 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~i~~~g~~~~~   75 (84)
                      +++|+|.+++....   .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..  +++.|||+++..
T Consensus        98 ~~~~~L~~~l~~~~---~~~~~~~~~i~~ql~~~L~~LH~~---~ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~~  168 (361)
T 3uc3_A           98 ASGGELYERICNAG---RFSEDEARFFFQQLLSGVSYCHSM---QICHRDLKLENTLLDGSPAPRLKICDFGYSKSS  168 (361)
T ss_dssp             CCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TCCSCCCCGGGEEECSSSSCCEEECCCCCC---
T ss_pred             CCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEcCCCCceEEEeecCccccc
Confidence            46889999997654   589999999999999999999998   9999999999999976654  999999988643

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=99.42  E-value=5.6e-13  Score=73.51  Aligned_cols=73  Identities=27%  Similarity=0.501  Sum_probs=59.0

Q ss_pred             CCCCcHHHHHhcCC---CcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDD---EAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++|+|.+++....   ....+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++....
T Consensus       113 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~---~ivH~Dikp~NIli~~~~~~kl~Dfg~a~~~~  188 (323)
T 3qup_A          113 MKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSSR---NFIHRDLAARNCMLAEDMTVCVADFGLSRKIY  188 (323)
T ss_dssp             CTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTSCEEECCCCC-----
T ss_pred             ccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHHcC---CcccCCCCcceEEEcCCCCEEEeecccccccc
Confidence            35789999886432   122488899999999999999999999   99999999999999999999999999987653

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=99.42  E-value=2.6e-12  Score=71.39  Aligned_cols=70  Identities=27%  Similarity=0.481  Sum_probs=62.7

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++++|.+++....   .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++....
T Consensus       123 ~~~~~L~~~~~~~~---~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~  192 (335)
T 2owb_A          123 CRRRSLLELHKRRK---ALTEPEARYYLRQIVLGCQYLHRN---RVIHRDLKLGNLFLNEDLEVKIGDFGLATKVE  192 (335)
T ss_dssp             CTTCBHHHHHHHHC---SCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEECCCTTCEECC
T ss_pred             CCCCCHHHHHhccC---CCCHHHHHHHHHHHHHHHHHHHHC---CCEecCCCchhEEEcCCCCEEEeeccCceecc
Confidence            35789999887654   588999999999999999999998   99999999999999999999999999987764

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=99.42  E-value=1.9e-12  Score=71.77  Aligned_cols=70  Identities=33%  Similarity=0.423  Sum_probs=62.1

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHh--------cCCCCCeEecCCCCCcEEeCCCCcEEEcccccc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLH--------HDCTLSVVHRDISSNNILLDLNLEASVADFGTA   72 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~   72 (84)
                      +++|+|.+++.+.    .+++.....++.|++.++.|+|        ..   +++|+|+++.|++++.+..+++.|||++
T Consensus       122 ~~~g~L~~~l~~~----~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~---~ivH~Dlkp~NIll~~~~~~kL~Dfg~~  194 (342)
T 1b6c_B          122 HEHGSLFDYLNRY----TVTVEGMIKLALSTASGLAHLHMEIVGTQGKP---AIAHRDLKSKNILVKKNGTCCIADLGLA  194 (342)
T ss_dssp             CTTCBHHHHHHHC----CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBC---EEECSCCSGGGEEECTTSCEEECCCTTC
T ss_pred             cCCCcHHHHHhcc----CccHHHHHHHHHHHHHHHHHHHHHHhhhcccC---CeeeCCCCHHHEEECCCCCEEEEECCCc
Confidence            3578999999764    4889999999999999999999        77   9999999999999999999999999998


Q ss_pred             eeccC
Q 040123           73 RLLHV   77 (84)
Q Consensus        73 ~~~~~   77 (84)
                      .....
T Consensus       195 ~~~~~  199 (342)
T 1b6c_B          195 VRHDS  199 (342)
T ss_dssp             EEEET
T ss_pred             eeccc
Confidence            76543

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=99.42  E-value=2.1e-12  Score=75.07  Aligned_cols=71  Identities=21%  Similarity=0.330  Sum_probs=62.5

Q ss_pred             CCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEe---CCCCcEEEcccccceeccCC
Q 040123            3 RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILL---DLNLEASVADFGTARLLHVD   78 (84)
Q Consensus         3 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~i~~~g~~~~~~~~   78 (84)
                      +++|.+++.....  .+++..+..++.|++.++.|+|..   +++|+|+++.|+++   +....+++.|||++..+...
T Consensus        86 g~sL~~ll~~~~~--~l~~~~~~~i~~qi~~aL~yLH~~---gIvHrDIKP~NILl~~~~~~~~vkL~DFGla~~~~~~  159 (483)
T 3sv0_A           86 GPSLEDLFNFCSR--KLSLKTVLMLADQMINRVEFVHSK---SFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDT  159 (483)
T ss_dssp             CCBHHHHHHHTTT--CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECCGGGTTCEEECCCTTCEECBCT
T ss_pred             CCCHHHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHHHC---CEeecccCcceEEEecCCCCCeEEEEeCCcceeccCC
Confidence            7899999875443  589999999999999999999998   99999999999999   56788999999999876543

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=99.41  E-value=2.3e-13  Score=78.33  Aligned_cols=72  Identities=36%  Similarity=0.583  Sum_probs=61.2

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      |++|+|.+++....+ ..++......++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||+++...
T Consensus       260 ~~~gsL~~~l~~~~~-~~~~~~~~~~i~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~  331 (452)
T 1fmk_A          260 MSKGSLLDFLKGETG-KYLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIE  331 (452)
T ss_dssp             CTTCBHHHHHSHHHH-TTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCCTTC---
T ss_pred             hcCCCHHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChhhEEECCCCCEEECCCccceecC
Confidence            468899999975321 1488899999999999999999998   99999999999999988999999999987654

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.41  E-value=1.4e-12  Score=70.98  Aligned_cols=71  Identities=28%  Similarity=0.465  Sum_probs=62.9

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++|+|.+++.....  .+++.....++.|++.++.++|..   +++|+|+++.|++++.+..+++.|||++....
T Consensus        91 ~~~~~L~~~l~~~~~--~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~  161 (287)
T 1u59_A           91 AGGGPLHKFLVGKRE--EIPVSNVAELLHQVSMGMKYLEEK---NFVHRDLAARNVLLVNRHYAKISDFGLSKALG  161 (287)
T ss_dssp             CTTEEHHHHHTTCTT--TSCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEEETTEEEECCCTTCEECT
T ss_pred             CCCCCHHHHHHhCCc--cCCHHHHHHHHHHHHHHHHHHHHC---CEeeCCCchheEEEcCCCCEEECcccceeeec
Confidence            357899999875433  588999999999999999999998   99999999999999988999999999987664

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=99.41  E-value=1.5e-12  Score=73.52  Aligned_cols=73  Identities=23%  Similarity=0.383  Sum_probs=62.0

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEe--CCCCcEEEcccccceeccCC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILL--DLNLEASVADFGTARLLHVD   78 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~i~~~g~~~~~~~~   78 (84)
                      +++|+|.+++.....  .+++.....++.|++.++.|+|..   +++|+|+++.|+++  +....+++.|||++..+...
T Consensus       168 ~~~~~L~~~l~~~~~--~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~  242 (373)
T 2x4f_A          168 VDGGELFDRIIDESY--NLTELDTILFMKQICEGIRHMHQM---YILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPR  242 (373)
T ss_dssp             CTTCEEHHHHHHTGG--GCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEETTTTEEEECCCSSCEECCTT
T ss_pred             CCCCcHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHHC---CcccccCCHHHEEEecCCCCcEEEEeCCCceecCCc
Confidence            457899888875432  588999999999999999999998   99999999999998  45678999999999876543

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=99.41  E-value=2.2e-12  Score=69.86  Aligned_cols=71  Identities=25%  Similarity=0.481  Sum_probs=63.0

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++++|.+++.....  .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++....
T Consensus        93 ~~~~~L~~~l~~~~~--~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~  163 (278)
T 3cok_A           93 CHNGEMNRYLKNRVK--PFSENEARHFMHQIITGMLYLHSH---GILHRDLTLSNLLLTRNMNIKIADFGLATQLK  163 (278)
T ss_dssp             CTTEEHHHHHHTCSS--CCCHHHHHHHHHHHHHHHHHHHHT---TEECSSCCGGGEEECTTCCEEECCCTTCEECC
T ss_pred             CCCCcHHHHHhhccC--CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCCEEEEeecceeecc
Confidence            357899999886533  588999999999999999999998   99999999999999999999999999987654

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=99.41  E-value=2.2e-12  Score=72.82  Aligned_cols=71  Identities=23%  Similarity=0.314  Sum_probs=62.3

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      |++|+|.+++...... .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||.+...
T Consensus       108 ~~~~~L~~~l~~~~~~-~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~NIll~~~~~~kl~dfg~~~~~  178 (389)
T 3gni_B          108 MAYGSAKDLICTHFMD-GMNELAIAYILQGVLKALDYIHHM---GYVHRSVKASHILISVDGKVYLSGLRSNLSM  178 (389)
T ss_dssp             CTTCBHHHHHHHTCTT-CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCGGGCEEC
T ss_pred             cCCCCHHHHHhhhccc-CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEcccccceee
Confidence            4689999999875322 588999999999999999999998   9999999999999999999999999976543

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=99.41  E-value=3.3e-12  Score=69.63  Aligned_cols=70  Identities=27%  Similarity=0.481  Sum_probs=62.6

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++++|.+++....   .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++....
T Consensus        97 ~~~~~L~~~~~~~~---~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~  166 (294)
T 2rku_A           97 CRRRSLLELHKRRK---ALTEPEARYYLRQIVLGCQYLHRN---RVIHRDLKLGNLFLNEDLEVKIGDFGLATKVE  166 (294)
T ss_dssp             CTTCBHHHHHHHHC---SCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEECC
T ss_pred             CCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEcCCCCEEEEeccCceecc
Confidence            35788998887654   588999999999999999999998   99999999999999999999999999987654

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=99.41  E-value=8e-13  Score=75.49  Aligned_cols=71  Identities=28%  Similarity=0.484  Sum_probs=60.6

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCC---CcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLN---LEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~i~~~g~~~~~~~   77 (84)
                      |++|+|.+++....   .+++.....++.|++.++.|+|..   +++|+|+++.|++++..   ..+++.|||++.....
T Consensus       221 ~~~g~L~~~l~~~~---~~~~~~~~~i~~qi~~~l~~LH~~---~ivHrDlkp~NIll~~~~~~~~~kl~DFG~a~~~~~  294 (419)
T 3i6u_A          221 MEGGELFDKVVGNK---RLKEATCKLYFYQMLLAVQYLHEN---GIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGE  294 (419)
T ss_dssp             CTTCBGGGGTSSSC---CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESSSSSSCCEEECCSSTTTSCC-
T ss_pred             CCCCcHHHHHhccC---CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEecCCCcceEEEeecccceecCC
Confidence            46789998887654   589999999999999999999998   99999999999999654   3599999999876543

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=99.41  E-value=3.4e-12  Score=70.81  Aligned_cols=74  Identities=28%  Similarity=0.452  Sum_probs=63.0

Q ss_pred             CCCCcHHHHHhcCCC-------------cccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEc
Q 040123            1 MERGSLFCVLRDDDE-------------AIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVA   67 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~-------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~   67 (84)
                      +++|+|.+++.....             ...+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.
T Consensus       123 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~  199 (334)
T 2pvf_A          123 ASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQ---KCIHRDLAARNVLVTENNVMKIA  199 (334)
T ss_dssp             CTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEEC
T ss_pred             CCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCccceEEEcCCCCEEEc
Confidence            357899999986542             11378889999999999999999998   99999999999999999999999


Q ss_pred             ccccceeccC
Q 040123           68 DFGTARLLHV   77 (84)
Q Consensus        68 ~~g~~~~~~~   77 (84)
                      |||++.....
T Consensus       200 Dfg~~~~~~~  209 (334)
T 2pvf_A          200 DFGLARDINN  209 (334)
T ss_dssp             CCTTCEECTT
T ss_pred             cccccccccc
Confidence            9999876543

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=99.41  E-value=5.6e-13  Score=72.62  Aligned_cols=71  Identities=32%  Similarity=0.553  Sum_probs=57.0

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++++|.+++.....  .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++....
T Consensus       101 ~~~~~L~~~l~~~~~--~~~~~~~~~i~~qi~~~L~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~  171 (289)
T 3og7_A          101 CEGSSLYHHLHASET--KFEMKKLIDIARQTARGMDYLHAK---SIIHRDLKSNNIFLHEDNTVKIGDFGLATEKS  171 (289)
T ss_dssp             CCEEEHHHHHTTC-----CCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEETTTEEEECCCC------
T ss_pred             cCCCcHHHHHhhccC--CCCHHHHHHHHHHHHHHHHHHHhC---CcccccCccceEEECCCCCEEEccceeccccc
Confidence            357889998865443  588899999999999999999998   99999999999999999999999999886543

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=99.41  E-value=2.8e-12  Score=70.90  Aligned_cols=73  Identities=30%  Similarity=0.420  Sum_probs=62.0

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCC-----CCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDC-----TLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      +++|+|.++++..    .+++.....++.|++.++.|+|..+     ..+++|+|+++.|++++.+..+++.|||++..+
T Consensus       117 ~~~g~L~~~l~~~----~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kl~Dfg~a~~~  192 (337)
T 3mdy_A          117 HENGSLYDYLKST----TLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVKF  192 (337)
T ss_dssp             CTTCBHHHHHHHC----CBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEEC
T ss_pred             cCCCcHHHHhhcc----CCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCEEecccchHHEEECCCCCEEEEeCCCceee
Confidence            4578999999764    4889999999999999999999541     227999999999999999999999999998765


Q ss_pred             cC
Q 040123           76 HV   77 (84)
Q Consensus        76 ~~   77 (84)
                      ..
T Consensus       193 ~~  194 (337)
T 3mdy_A          193 IS  194 (337)
T ss_dssp             C-
T ss_pred             cc
Confidence            43

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=99.41  E-value=1.8e-12  Score=70.61  Aligned_cols=71  Identities=27%  Similarity=0.572  Sum_probs=62.4

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++|+|.+++.....  .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++....
T Consensus        97 ~~~~~L~~~l~~~~~--~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~  167 (303)
T 1zy4_A           97 CENGTLYDLIHSENL--NQQRDEYWRLFRQILEALSYIHSQ---GIIHRDLKPMNIFIDESRNVKIGDFGLAKNVH  167 (303)
T ss_dssp             CCSCBHHHHHHHSCG--GGCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECCCCCCSCTT
T ss_pred             CCCCCHHHhhhcccc--ccchHHHHHHHHHHHHHHHHHHhC---CeecccCCHHhEEEcCCCCEEEeeCcchhhcc
Confidence            357899999986443  577888899999999999999998   99999999999999999999999999887654

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=99.40  E-value=6.7e-13  Score=73.98  Aligned_cols=68  Identities=21%  Similarity=0.314  Sum_probs=60.6

Q ss_pred             CCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCC--cEEEcccccceecc
Q 040123            3 RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNL--EASVADFGTARLLH   76 (84)
Q Consensus         3 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~i~~~g~~~~~~   76 (84)
                      +++|.+++....   .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+.  .+++.|||+++.+.
T Consensus       135 ~~~L~~~l~~~~---~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~~~kL~Dfg~a~~~~  204 (345)
T 2v62_A          135 GIDLQKISGQNG---TFKKSTVLQLGIRMLDVLEYIHEN---EYVHGDIKAANLLLGYKNPDQVYLADYGLSYRYC  204 (345)
T ss_dssp             EEEHHHHCBGGG---BCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEESSSTTSEEECCCTTCEESS
T ss_pred             CCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCcCHHHEEEccCCCCcEEEEeCCCceecc
Confidence            578888887654   589999999999999999999998   999999999999998766  89999999997664

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.40  E-value=1.4e-12  Score=70.09  Aligned_cols=70  Identities=30%  Similarity=0.486  Sum_probs=62.3

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      +++|+|.+++.....  .+++.....++.|++.++.++|..   +++|+|+++.|++++.+..+++.|||++...
T Consensus        85 ~~~~~L~~~~~~~~~--~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~  154 (267)
T 3t9t_A           85 MEHGCLSDYLRTQRG--LFAAETLLGMCLDVCEGMAYLEEA---CVIHRDLAARNCLVGENQVIKVSDFGMTRFV  154 (267)
T ss_dssp             CTTCBHHHHHHHTTT--CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECGGGCEEECCTTGGGGB
T ss_pred             CCCCcHHHHHhhCcc--cCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCchheEEECCCCCEEEccccccccc
Confidence            357899999987543  588999999999999999999998   9999999999999998899999999988754

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=99.40  E-value=9.6e-13  Score=71.51  Aligned_cols=70  Identities=23%  Similarity=0.399  Sum_probs=60.9

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCc--------EEEcccccc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLE--------ASVADFGTA   72 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--------~~i~~~g~~   72 (84)
                      +++|+|.+++.....  .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..        +++.|||++
T Consensus        94 ~~~~~L~~~l~~~~~--~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~~~~~kl~Dfg~~  168 (289)
T 4fvq_A           94 VKFGSLDTYLKKNKN--CINILWKLEVAKQLAAAMHFLEEN---TLIHGNVCAKNILLIREEDRKTGNPPFIKLSDPGIS  168 (289)
T ss_dssp             CTTCBHHHHHHHTGG--GCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEEECCBGGGTBCCEEEECCCCSC
T ss_pred             CCCCCHHHHHHhCCC--CCCHHHHHHHHHHHHHHHHHHhhC---CeECCCcCcceEEEecCCcccccccceeeeccCccc
Confidence            457899999987543  488899999999999999999999   9999999999999977665        999999987


Q ss_pred             eec
Q 040123           73 RLL   75 (84)
Q Consensus        73 ~~~   75 (84)
                      ...
T Consensus       169 ~~~  171 (289)
T 4fvq_A          169 ITV  171 (289)
T ss_dssp             TTT
T ss_pred             ccc
Confidence            544

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=99.40  E-value=1.7e-12  Score=72.56  Aligned_cols=70  Identities=27%  Similarity=0.532  Sum_probs=57.6

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCC---CCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL---NLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~i~~~g~~~~~~   76 (84)
                      +++|+|.+++....   .+++.....++.|++.++.|+|..   +++|+|+++.|++++.   +..+++.|||++....
T Consensus       130 ~~~~~L~~~l~~~~---~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~~~  202 (349)
T 2w4o_A          130 VTGGELFDRIVEKG---YYSERDAADAVKQILEAVAYLHEN---GIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVE  202 (349)
T ss_dssp             CCSCBHHHHHTTCS---SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEESSSSTTCCEEECCCC------
T ss_pred             CCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCcccEEEecCCCCCCEEEccCccccccC
Confidence            45789999997654   588999999999999999999998   9999999999999975   7789999999987654

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=99.40  E-value=4.2e-12  Score=68.99  Aligned_cols=70  Identities=31%  Similarity=0.592  Sum_probs=60.2

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCC--eEecCCCCCcEEeCCCCc-----EEEcccccce
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLS--VVHRDISSNNILLDLNLE-----ASVADFGTAR   73 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~-----~~i~~~g~~~   73 (84)
                      +++|+|.+++.....  .+++.....++.|++.++.|+|..   +  ++|+|+++.|++++....     +++.|||++.
T Consensus       103 ~~~~~L~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~lH~~---~~~ivH~dikp~Nil~~~~~~~~~~~~kl~Dfg~~~  177 (287)
T 4f0f_A          103 VPCGDLYHRLLDKAH--PIKWSVKLRLMLDIALGIEYMQNQ---NPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGLSQ  177 (287)
T ss_dssp             CTTCBHHHHHHCTTS--CCCHHHHHHHHHHHHHHHHHHHTS---SSCCBCSCCSGGGEEESCCCTTCSCCEEECCCTTCB
T ss_pred             cCCCCHHHHHhcccC--CccHHHHHHHHHHHHHHHHHHHhC---CCCeecCCCCcceEEEeccCCCCceeEEeCCCCccc
Confidence            357899988876543  588999999999999999999988   8  999999999999976655     8999999886


Q ss_pred             ec
Q 040123           74 LL   75 (84)
Q Consensus        74 ~~   75 (84)
                      ..
T Consensus       178 ~~  179 (287)
T 4f0f_A          178 QS  179 (287)
T ss_dssp             CC
T ss_pred             cc
Confidence            44

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=99.40  E-value=1.8e-12  Score=71.03  Aligned_cols=75  Identities=29%  Similarity=0.492  Sum_probs=63.9

Q ss_pred             CCCCcHHHHHhcCCCc---------------ccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEE
Q 040123            1 MERGSLFCVLRDDDEA---------------IELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEAS   65 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~---------------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~   65 (84)
                      +++|+|.+++......               ..+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..++
T Consensus       109 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~k  185 (313)
T 1t46_A          109 CCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASK---NCIHRDLAARNILLTHGRITK  185 (313)
T ss_dssp             CTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEETTTEEE
T ss_pred             CCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCccceEEEcCCCCEE
Confidence            3578999998865421               1378899999999999999999998   999999999999999999999


Q ss_pred             EcccccceeccCC
Q 040123           66 VADFGTARLLHVD   78 (84)
Q Consensus        66 i~~~g~~~~~~~~   78 (84)
                      +.|||++......
T Consensus       186 l~Dfg~~~~~~~~  198 (313)
T 1t46_A          186 ICDFGLARDIKND  198 (313)
T ss_dssp             ECCCGGGSCTTSC
T ss_pred             Ecccccccccccc
Confidence            9999998766543

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=99.40  E-value=5.8e-13  Score=75.00  Aligned_cols=70  Identities=20%  Similarity=0.138  Sum_probs=58.2

Q ss_pred             CCcHHHHHhcCCC----cccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            3 RGSLFCVLRDDDE----AIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         3 ~g~L~~~l~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      +|+|.+++.....    ...+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++...
T Consensus       183 ~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivHrDikp~NIll~~~~~~kL~DFG~a~~~  256 (377)
T 3byv_A          183 QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHY---GLVHTYLRPVDIVLDQRGGVFLTGFEHLVRD  256 (377)
T ss_dssp             SEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEECCGGGCEET
T ss_pred             CCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEEechhheec
Confidence            5789998885431    01233477778999999999999999   9999999999999999999999999998754

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=99.39  E-value=9.7e-13  Score=71.37  Aligned_cols=71  Identities=28%  Similarity=0.381  Sum_probs=62.2

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++++|.+++.....  .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++....
T Consensus        94 ~~~~~L~~~l~~~~~--~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~  164 (281)
T 3cc6_A           94 YPYGELGHYLERNKN--SLKVLTLVLYSLQICKAMAYLESI---NCVHRDIAVRNILVASPECVKLGDFGLSRYIE  164 (281)
T ss_dssp             CTTCBHHHHHHHHTT--TCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEEEETTEEEECCCCGGGCC-
T ss_pred             CCCCCHHHHHHhccc--cCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCccceEEECCCCcEEeCccCCCcccc
Confidence            357899999976443  588899999999999999999998   99999999999999988999999999987654

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.39  E-value=2.6e-13  Score=79.49  Aligned_cols=72  Identities=36%  Similarity=0.583  Sum_probs=62.5

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      |++|+|.++++...+ ..+++..+..++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||+++.+.
T Consensus       343 ~~~gsL~~~l~~~~~-~~l~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~  414 (535)
T 2h8h_A          343 MSKGSLLDFLKGETG-KYLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIE  414 (535)
T ss_dssp             CTTEEHHHHHSHHHH-TTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCTTSTTTCC
T ss_pred             hcCCcHHHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCHhhEEEcCCCcEEEcccccceecC
Confidence            457899999975321 1488899999999999999999998   99999999999999988899999999987653

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=99.39  E-value=1.5e-12  Score=71.55  Aligned_cols=70  Identities=27%  Similarity=0.484  Sum_probs=59.6

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCc---EEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLE---ASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~i~~~g~~~~~~   76 (84)
                      +++|+|.+++....   .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..   +++.|||++....
T Consensus        93 ~~~~~L~~~l~~~~---~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~~~~  165 (316)
T 2ac3_A           93 MRGGSILSHIHKRR---HFNELEASVVVQDVASALDFLHNK---GIAHRDLKPENILCEHPNQVSPVKICDFDLGSGIK  165 (316)
T ss_dssp             CTTCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEESCSSSSCSEEECCTTCCC---
T ss_pred             CCCCcHHHHHhccC---CCCHHHHHHHHHHHHHHHHHHHhC---CceeCCCCHHHEEEccCCCcCceEEEEccCccccc
Confidence            45789999998654   588999999999999999999998   9999999999999987654   8999999887553

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=99.39  E-value=2.4e-12  Score=70.71  Aligned_cols=73  Identities=23%  Similarity=0.417  Sum_probs=60.0

Q ss_pred             CCCCcHHHHHhcCC---CcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDD---EAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++|+|.+++....   ....+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++....
T Consensus       123 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dikp~NIli~~~~~~kl~Dfg~~~~~~  198 (313)
T 3brb_A          123 MKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSNR---NFLHRDLAARNCMLRDDMTVCVADFGLSKKIY  198 (313)
T ss_dssp             CTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHHTT---TCCCCCCSGGGEEECTTSCEEECSCSCC----
T ss_pred             ccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCcceEEEcCCCcEEEeecCcceecc
Confidence            35789999885321   223588999999999999999999988   99999999999999999999999999987653

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=99.39  E-value=3.9e-12  Score=68.84  Aligned_cols=74  Identities=22%  Similarity=0.336  Sum_probs=61.2

Q ss_pred             CCCCcHHHHHhcCCC-cccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeC-------------------C
Q 040123            1 MERGSLFCVLRDDDE-AIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLD-------------------L   60 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------------------~   60 (84)
                      +++|+|.+++..... ...+++.....++.|++.++.|+|..   +++|+|+++.|++++                   .
T Consensus        93 ~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dikp~NIl~~~~~~~~~~~~~~~~~~~~~~  169 (289)
T 1x8b_A           93 CNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIHSM---SLVHMDIKPSNIFISRTSIPNAASEEGDEDDWASN  169 (289)
T ss_dssp             CTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEC--------------------
T ss_pred             cCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHhC---CEeecCCCHHHEEEcCCCCCcccccccccccccCC
Confidence            457899999976421 12588999999999999999999998   999999999999997                   3


Q ss_pred             CCcEEEcccccceeccC
Q 040123           61 NLEASVADFGTARLLHV   77 (84)
Q Consensus        61 ~~~~~i~~~g~~~~~~~   77 (84)
                      ...+++.|||.+.....
T Consensus       170 ~~~~kl~Dfg~~~~~~~  186 (289)
T 1x8b_A          170 KVMFKIGDLGHVTRISS  186 (289)
T ss_dssp             CCCEEECCCTTCEETTC
T ss_pred             ceEEEEcccccccccCC
Confidence            44789999999877654

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=99.39  E-value=3.2e-12  Score=74.24  Aligned_cols=71  Identities=28%  Similarity=0.508  Sum_probs=61.5

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCC---CcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLN---LEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~i~~~g~~~~~~~   77 (84)
                      +++|+|.+++....   .+++.....++.|++.++.|+|..   +++|+|+++.|+++...   ..+++.|||++..+..
T Consensus       118 ~~~g~L~~~~~~~~---~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~~~~~  191 (494)
T 3lij_A          118 YKGGELFDEIIHRM---KFNEVDAAVIIKQVLSGVTYLHKH---NIVHRDLKPENLLLESKEKDALIKIVDFGLSAVFEN  191 (494)
T ss_dssp             CCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSTTCCEEECCCTTCEECBT
T ss_pred             CCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CceeccCChhhEEEeCCCCCCcEEEEECCCCeECCC
Confidence            46889998887654   588999999999999999999998   99999999999999753   4599999999877654

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=99.39  E-value=4e-12  Score=69.21  Aligned_cols=71  Identities=18%  Similarity=0.311  Sum_probs=61.8

Q ss_pred             CCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeC---CCCcEEEcccccceeccCC
Q 040123            3 RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLD---LNLEASVADFGTARLLHVD   78 (84)
Q Consensus         3 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~i~~~g~~~~~~~~   78 (84)
                      +++|.+++.....  .+++.....++.|++.++.|+|..   +++|+|+++.|+++.   .+..+++.|||++......
T Consensus        88 ~~~L~~~~~~~~~--~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~  161 (296)
T 3uzp_A           88 GPSLEDLFNFCSR--KFSLKTVLLLADQMISRIEYIHSK---NFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDA  161 (296)
T ss_dssp             CCBHHHHHHHTTT--CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECCGGGTTCEEECCCTTCEECBCT
T ss_pred             CCCHHHHHHhhcc--CCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHeEEecCCCCCeEEEeeCCCccccccc
Confidence            6889999875443  588999999999999999999998   999999999999994   6778999999998876543

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=99.39  E-value=1.6e-12  Score=70.68  Aligned_cols=72  Identities=28%  Similarity=0.398  Sum_probs=63.2

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      +++|+|.+++.....  .+++.....++.|++.++.++|..   +++|+|+++.|++++.+..+++.|||++.....
T Consensus       102 ~~~~~L~~~l~~~~~--~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~  173 (291)
T 1u46_A          102 APLGSLLDRLRKHQG--HFLLGTLSRYAVQVAEGMGYLESK---RFIHRDLAARNLLLATRDLVKIGDFGLMRALPQ  173 (291)
T ss_dssp             CTTCBHHHHHHHHGG--GSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEEEETTEEEECCCTTCEECCC
T ss_pred             ccCCCHHHHHHhccC--CcCHHHHHHHHHHHHHHHHHHHhC---CcccCCCchheEEEcCCCCEEEccccccccccc
Confidence            357899999886432  588999999999999999999998   999999999999999889999999999877643

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=99.39  E-value=1.3e-12  Score=78.24  Aligned_cols=72  Identities=28%  Similarity=0.406  Sum_probs=63.8

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      +++|+|.+++.....  .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++.....
T Consensus       472 ~~~g~L~~~l~~~~~--~l~~~~~~~i~~qi~~aL~~LH~~---givHrDikp~NILl~~~~~vkL~DFG~a~~~~~  543 (656)
T 2j0j_A          472 CTLGELRSFLQVRKF--SLDLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDFGLSRYMED  543 (656)
T ss_dssp             CTTCBHHHHHHHTTT--TCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCCCCCCSCCC
T ss_pred             CCCCcHHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHhC---CccccccchHhEEEeCCCCEEEEecCCCeecCC
Confidence            467999999986543  588899999999999999999998   999999999999999999999999999876643

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=99.39  E-value=1.3e-12  Score=70.70  Aligned_cols=73  Identities=33%  Similarity=0.583  Sum_probs=62.7

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      +++++|.+++....+ ..+++.....++.|++.++.++|..   +++|+|+++.|++++.+..+++.|||.+.....
T Consensus        89 ~~~~~L~~~l~~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~  161 (279)
T 1qpc_A           89 MENGSLVDFLKTPSG-IKLTINKLLDMAAQIAEGMAFIEER---NYIHRDLRAANILVSDTLSCKIADFGLARLIED  161 (279)
T ss_dssp             CTTCBHHHHTTSHHH-HTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTCEECSS
T ss_pred             CCCCCHHHHHhcCCC-CCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHhhEEEcCCCCEEECCCcccccccC
Confidence            357899999875321 1478899999999999999999998   999999999999999999999999999876543

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=99.39  E-value=1.3e-12  Score=72.76  Aligned_cols=68  Identities=24%  Similarity=0.329  Sum_probs=59.9

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      .+|+|.+++....   .+++.....++.|++.++.|+|..   +++|+|+++.|++++ +..+++.|||++..+.
T Consensus        91 ~~~~L~~~l~~~~---~~~~~~~~~i~~qi~~al~~lH~~---~iiHrDikp~NIll~-~~~~kl~DFG~a~~~~  158 (343)
T 3dbq_A           91 GNIDLNSWLKKKK---SIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIV-DGMLKLIDFGIANQMQ  158 (343)
T ss_dssp             CSEEHHHHHHHSC---CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEE-TTEEEECCCSSSCCC-
T ss_pred             CCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCcceEEEE-CCcEEEeecccccccC
Confidence            4689999998765   588999999999999999999998   999999999999996 4679999999987654

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=99.39  E-value=2.9e-12  Score=69.73  Aligned_cols=69  Identities=25%  Similarity=0.424  Sum_probs=60.9

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCC--eEecCCCCCcEEeC-CCCcEEEcccccceec
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLS--VVHRDISSNNILLD-LNLEASVADFGTARLL   75 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~l~~~~~~~~-~~~~~~i~~~g~~~~~   75 (84)
                      +++|+|.+++....   .+++.....++.|++.++.|+|..   +  ++|+|+++.|++++ .+..+++.|||++...
T Consensus       111 ~~~~~L~~~l~~~~---~~~~~~~~~~~~qi~~~l~~lH~~---~~~i~H~dikp~Nil~~~~~~~~kl~Dfg~~~~~  182 (290)
T 1t4h_A          111 MTSGTLKTYLKRFK---VMKIKVLRSWCRQILKGLQFLHTR---TPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLK  182 (290)
T ss_dssp             CCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHTS---SSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGC
T ss_pred             cCCCCHHHHHHHcc---CCCHHHHHHHHHHHHHHHHHHHcC---CCCEEECCCCHHHEEEECCCCCEEEeeCCCcccc
Confidence            45789999998654   588999999999999999999988   7  99999999999997 6789999999988643

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=99.39  E-value=1.2e-12  Score=73.03  Aligned_cols=71  Identities=23%  Similarity=0.301  Sum_probs=62.3

Q ss_pred             CCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCC--cEEEcccccceeccC
Q 040123            3 RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNL--EASVADFGTARLLHV   77 (84)
Q Consensus         3 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~i~~~g~~~~~~~   77 (84)
                      +|+|.+++..... ..+++.....++.|++.++.|+|..   +++|+|+++.|++++.+.  .+++.|||++..+..
T Consensus       141 ~~~L~~~l~~~~~-~~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dikp~NIl~~~~~~~~~kl~Dfg~a~~~~~  213 (352)
T 2jii_A          141 GRSLQSALDVSPK-HVLSERSVLQVACRLLDALEFLHEN---EYVHGNVTAENIFVDPEDQSQVTLAGYGFAFRYCP  213 (352)
T ss_dssp             CEEHHHHHHHSGG-GCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCCGGGEEEETTEEEEEEECCGGGCBCSSG
T ss_pred             CcCHHHHHHhCCc-CCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCHHHEEEcCCCCceEEEecCcceeeccC
Confidence            6899999986521 2589999999999999999999999   999999999999999887  899999999976543

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=99.39  E-value=1.8e-12  Score=73.44  Aligned_cols=69  Identities=23%  Similarity=0.316  Sum_probs=59.5

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      .+++|.+++....   .+++.....++.|++.++.|+|..   +++|+|+++.|++++ +..+++.|||++..+..
T Consensus       138 ~~~~L~~~l~~~~---~~~~~~~~~i~~qi~~aL~~lH~~---~ivHrDlkp~NIll~-~~~~kl~DFG~a~~~~~  206 (390)
T 2zmd_A          138 GNIDLNSWLKKKK---SIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIV-DGMLKLIDFGIANQMQP  206 (390)
T ss_dssp             CSEEHHHHHHHCS---SCCHHHHHHHHHHHHHHHHHHHTT---TCCCCCCCGGGEEES-SSCEEECCCSSSCCC--
T ss_pred             CCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCHHHEEEE-CCeEEEEecCccccccC
Confidence            4678999998765   578888999999999999999988   999999999999995 46899999999986643

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=99.39  E-value=3.6e-12  Score=69.23  Aligned_cols=69  Identities=30%  Similarity=0.525  Sum_probs=61.7

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      ++|+|.+++....   .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++....
T Consensus        97 ~~~~L~~~l~~~~---~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~  165 (284)
T 2vgo_A           97 PRGELYKELQKHG---RFDEQRSATFMEELADALHYCHER---KVIHRDIKPENLLMGYKGELKIADFGWSVHAP  165 (284)
T ss_dssp             TTEEHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECTTCCEEECCCTTCEECS
T ss_pred             CCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEEcCCCCEEEecccccccCc
Confidence            5679999988654   588999999999999999999988   99999999999999999999999999886543

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=99.39  E-value=3.8e-12  Score=74.08  Aligned_cols=72  Identities=31%  Similarity=0.567  Sum_probs=62.7

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCC---cEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNL---EASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~i~~~g~~~~~~~   77 (84)
                      |++|+|.+++....   .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+.   .+++.|||++..+..
T Consensus       128 ~~gg~L~~~l~~~~---~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~  201 (504)
T 3q5i_A          128 YEGGELFEQIINRH---KFDECDAANIMKQILSGICYLHKH---NIVHRDIKPENILLENKNSLLNIKIVDFGLSSFFSK  201 (504)
T ss_dssp             CTTCBHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESSTTCCSSEEECCCTTCEECCT
T ss_pred             CCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCcHHHEEEecCCCCccEEEEECCCCEEcCC
Confidence            46889999887654   589999999999999999999998   999999999999997654   689999999987654


Q ss_pred             C
Q 040123           78 D   78 (84)
Q Consensus        78 ~   78 (84)
                      .
T Consensus       202 ~  202 (504)
T 3q5i_A          202 D  202 (504)
T ss_dssp             T
T ss_pred             C
Confidence            3

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=99.39  E-value=4.7e-12  Score=69.04  Aligned_cols=68  Identities=26%  Similarity=0.383  Sum_probs=59.1

Q ss_pred             CcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            4 GSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         4 g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      |++.+++.....  .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++....
T Consensus        85 ~~l~~~~~~~~~--~l~~~~~~~~~~ql~~~l~~lH~~---~ivH~dikp~Nil~~~~~~~kl~Dfg~~~~~~  152 (292)
T 3o0g_A           85 QDLKKYFDSCNG--DLDPEIVKSFLFQLLKGLGFCHSR---NVLHRDLKPQNLLINRNGELKLANFGLARAFG  152 (292)
T ss_dssp             EEHHHHHHHTTT--CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECC
T ss_pred             CCHHHHHHhCCC--CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEeecccceecC
Confidence            466666655333  588999999999999999999998   99999999999999999999999999987654

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=99.39  E-value=1.5e-12  Score=71.20  Aligned_cols=69  Identities=23%  Similarity=0.387  Sum_probs=58.6

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      ++|+|.+++..    ..+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++..+..
T Consensus       121 ~~~~l~~~~~~----~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~  189 (298)
T 2zv2_A          121 NQGPVMEVPTL----KPLSEDQARFYFQDLIKGIEYLHYQ---KIIHRDIKPSNLLVGEDGHIKIADFGVSNEFKG  189 (298)
T ss_dssp             TTCBSCCSSCS----SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCCTTCEECSS
T ss_pred             CCCcHHHHhhc----CCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHEEECCCCCEEEecCCCcccccc
Confidence            45666654432    1588999999999999999999998   999999999999999999999999999876643

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=99.38  E-value=4.6e-13  Score=75.27  Aligned_cols=68  Identities=10%  Similarity=0.094  Sum_probs=55.9

Q ss_pred             CcHHHHHhcCCCcccCCHHHH------HHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            4 GSLFCVLRDDDEAIELNWTKR------VSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         4 g~L~~~l~~~~~~~~~~~~~~------~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      |+|.+++.....  .++....      ..++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++....
T Consensus       172 ~~L~~~l~~~~~--~~~~~~~~~~~vk~~i~~qi~~aL~~LH~~---~ivHrDikp~NIll~~~~~~kL~DFG~a~~~~  245 (371)
T 3q60_A          172 VDLELLFSTLDF--VYVFRGDEGILALHILTAQLIRLAANLQSK---GLVHGHFTPDNLFIMPDGRLMLGDVSALWKVG  245 (371)
T ss_dssp             EEHHHHHHHHHH--SCCCCHHHHHHHHHHHHHHHHHHHHHHHHT---TEEETTCSGGGEEECTTSCEEECCGGGEEETT
T ss_pred             CCHHHHHHHhcc--ccchhhhhhhhhHHHHHHHHHHHHHHHHHC---CCccCcCCHHHEEECCCCCEEEEecceeeecC
Confidence            789998886432  2333333      56669999999999998   99999999999999999999999999987654

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=99.38  E-value=2.9e-12  Score=71.31  Aligned_cols=72  Identities=25%  Similarity=0.518  Sum_probs=60.9

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCC---CCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL---NLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~i~~~g~~~~~~   76 (84)
                      +++|+|.+++..... ..+++.....++.|++.++.|+|..   +++|+|+++.|+++..   ...+++.|||++....
T Consensus       108 ~~gg~L~~~l~~~~~-~~l~~~~~~~i~~ql~~~l~~LH~~---~ivH~dlkp~NIll~~~~~~~~~kl~Dfg~~~~~~  182 (336)
T 3fhr_A          108 MEGGELFSRIQERGD-QAFTEREAAEIMRDIGTAIQFLHSH---NIAHRDVKPENLLYTSKEKDAVLKLTDFGFAKETT  182 (336)
T ss_dssp             CTTEEHHHHHHTC-C-CCCBHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSTTCCEEECCCTTCEEC-
T ss_pred             cCCCCHHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEEecCCCceEEEeccccceecc
Confidence            457899999986543 2588999999999999999999999   9999999999999975   3459999999987654

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=99.38  E-value=2.2e-12  Score=69.90  Aligned_cols=69  Identities=30%  Similarity=0.476  Sum_probs=61.1

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      +++|+|.+++....   .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++...
T Consensus        91 ~~~~~l~~~l~~~~---~~~~~~~~~~~~qi~~~l~~LH~~---~i~H~dlkp~Nili~~~~~~~l~Dfg~~~~~  159 (279)
T 3fdn_A           91 APLGTVYRELQKLS---KFDEQRTATYITELANALSYCHSK---RVIHRDIKPENLLLGSAGELKIADFGWSVHA  159 (279)
T ss_dssp             CTTEEHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHTT---TCEECCCCGGGEEECTTSCEEECSCCEESCC
T ss_pred             CCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CEecccCChHhEEEcCCCCEEEEeccccccC
Confidence            35688988887654   588999999999999999999988   9999999999999999999999999987543

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=99.38  E-value=1.2e-12  Score=72.52  Aligned_cols=72  Identities=32%  Similarity=0.518  Sum_probs=62.1

Q ss_pred             CCCCcHHHHHhcCCC---------------------cccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeC
Q 040123            1 MERGSLFCVLRDDDE---------------------AIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLD   59 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~---------------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~   59 (84)
                      +++|+|.+++.....                     ...+++.....++.|++.++.|+|..   +++|+|+++.|++++
T Consensus       132 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIl~~  208 (343)
T 1luf_A          132 MAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSER---KFVHRDLATRNCLVG  208 (343)
T ss_dssp             CTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEC
T ss_pred             CCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCcceEEEC
Confidence            457899999986431                     12588899999999999999999998   999999999999999


Q ss_pred             CCCcEEEcccccceec
Q 040123           60 LNLEASVADFGTARLL   75 (84)
Q Consensus        60 ~~~~~~i~~~g~~~~~   75 (84)
                      .+..+++.|||++...
T Consensus       209 ~~~~~kl~Dfg~~~~~  224 (343)
T 1luf_A          209 ENMVVKIADFGLSRNI  224 (343)
T ss_dssp             GGGCEEECCCSCHHHH
T ss_pred             CCCeEEEeecCCCccc
Confidence            9999999999988654

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=99.38  E-value=4.9e-12  Score=69.72  Aligned_cols=68  Identities=24%  Similarity=0.370  Sum_probs=60.2

Q ss_pred             CcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            4 GSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         4 g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      |+|.+++.....  .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++....
T Consensus       103 ~~l~~~~~~~~~--~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~  170 (311)
T 3niz_A          103 KDLKKVLDENKT--GLQDSQIKIYLYQLLRGVAHCHQH---RILHRDLKPQNLLINSDGALKLADFGLARAFG  170 (311)
T ss_dssp             EEHHHHHHTCTT--CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEETT
T ss_pred             CCHHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCchHhEEECCCCCEEEccCcCceecC
Confidence            577777776543  588999999999999999999998   99999999999999999999999999987654

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=99.38  E-value=8.6e-12  Score=69.69  Aligned_cols=71  Identities=25%  Similarity=0.356  Sum_probs=61.1

Q ss_pred             CCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCC----------------------
Q 040123            3 RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL----------------------   60 (84)
Q Consensus         3 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------------------   60 (84)
                      +++|.+++...... .++...+..++.|++.++.|+|..   +++|+|+++.|++++.                      
T Consensus       119 ~~~L~~~~~~~~~~-~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~~~~~~~~~~~~~~~~~~~  194 (360)
T 3llt_A          119 GPSLYEIITRNNYN-GFHIEDIKLYCIEILKALNYLRKM---SLTHTDLKPENILLDDPYFEKSLITVRRVTDGKKIQIY  194 (360)
T ss_dssp             CCBHHHHHHHTTTC-CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCTTCCEEEEEEECTTTCCEEEEE
T ss_pred             CCCHHHHHHhcCCC-CCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCcccEEEccccccccccchhccccccccccc
Confidence            68899998865432 488899999999999999999998   9999999999999975                      


Q ss_pred             ---CCcEEEcccccceeccC
Q 040123           61 ---NLEASVADFGTARLLHV   77 (84)
Q Consensus        61 ---~~~~~i~~~g~~~~~~~   77 (84)
                         ...+++.|||++.....
T Consensus       195 ~~~~~~~kl~DFG~a~~~~~  214 (360)
T 3llt_A          195 RTKSTGIKLIDFGCATFKSD  214 (360)
T ss_dssp             EESCCCEEECCCTTCEETTS
T ss_pred             ccCCCCEEEEeccCceecCC
Confidence               67899999999876543

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=99.38  E-value=1.5e-12  Score=70.78  Aligned_cols=73  Identities=30%  Similarity=0.495  Sum_probs=63.5

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      +++|+|.+++...... .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||.+.....
T Consensus        91 ~~~~~L~~~~~~~~~~-~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~  163 (288)
T 3kfa_A           91 MTYGNLLDYLRECNRQ-EVSAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMTG  163 (288)
T ss_dssp             CTTEEHHHHHHHCCTT-TSCHHHHHHHHHHHHHHHHHHHHH---TCCCSCCSGGGEEECGGGCEEECCCCGGGTSCS
T ss_pred             CCCCcHHHHHHhcccC-CccHhHHHHHHHHHHHHHHHHHHC---CccCCCCCcceEEEcCCCCEEEccCccceeccC
Confidence            3578999999864432 588999999999999999999998   999999999999999889999999999876543

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=99.38  E-value=2.6e-12  Score=71.88  Aligned_cols=74  Identities=20%  Similarity=0.342  Sum_probs=61.0

Q ss_pred             CCCCcHHHHHhcCC-CcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCC---cEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDD-EAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNL---EASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~i~~~g~~~~~~   76 (84)
                      |++|+|.+++.... ....+++.....++.|++.++.|+|..   +++|+|+++.|++++.+.   .+++.|||++....
T Consensus       108 ~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivHrDlkp~NIl~~~~~~~~~vkl~Dfg~a~~~~  184 (351)
T 3c0i_A          108 MDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCHDN---NIIHRDVKPHCVLLASKENSAPVKLGGFGVAIQLG  184 (351)
T ss_dssp             CSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECSSSTTCCEEECCCTTCEECC
T ss_pred             CCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCChHHeEEecCCCCCcEEEecCcceeEec
Confidence            46789988776432 122478999999999999999999998   999999999999997654   49999999987765


Q ss_pred             C
Q 040123           77 V   77 (84)
Q Consensus        77 ~   77 (84)
                      .
T Consensus       185 ~  185 (351)
T 3c0i_A          185 E  185 (351)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=99.37  E-value=6.8e-12  Score=68.03  Aligned_cols=71  Identities=23%  Similarity=0.416  Sum_probs=60.9

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCc---EEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLE---ASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~i~~~g~~~~~~~   77 (84)
                      +++|+|.+++....   .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..   +++.|||.+.....
T Consensus        87 ~~~~~l~~~~~~~~---~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~~~~  160 (284)
T 3kk8_A           87 VTGGELFEDIVARE---FYSEADASHCIQQILESIAYCHSN---GIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVND  160 (284)
T ss_dssp             CCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESSSSTTCCEEECCCTTCEECCS
T ss_pred             CCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CcCcCCCCHHHEEEecCCCCCcEEEeeceeeEEccc
Confidence            35788988887654   588999999999999999999998   9999999999999976544   99999999876554

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=99.37  E-value=2.4e-12  Score=74.46  Aligned_cols=71  Identities=24%  Similarity=0.510  Sum_probs=61.9

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEe---CCCCcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILL---DLNLEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~i~~~g~~~~~~~   77 (84)
                      +++|+|.+++....   .+++.....++.|++.++.|+|..   +++|+|+++.|+++   ..+..+++.|||++..+..
T Consensus       108 ~~~~~L~~~~~~~~---~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~  181 (484)
T 3nyv_A          108 YTGGELFDEIISRK---RFSEVDAARIIRQVLSGITYMHKN---KIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEA  181 (484)
T ss_dssp             CCSCBHHHHHHTCS---CCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESSSSTTCCEEECCTTHHHHBCC
T ss_pred             CCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHHHEEEecCCCCCcEEEEeeeeeEEccc
Confidence            45789999987654   588999999999999999999998   99999999999999   4567899999998876543

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=99.37  E-value=5.7e-12  Score=71.20  Aligned_cols=66  Identities=32%  Similarity=0.542  Sum_probs=59.4

Q ss_pred             CcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            4 GSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         4 g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      |+|..+++..    .+++.....++.|++.++.|+|+.   +++|+|+++.|++++.+..+++.|||+++.+.
T Consensus        95 ~~L~~~~~~~----~~~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~  160 (388)
T 3oz6_A           95 TDLHAVIRAN----ILEPVHKQYVVYQLIKVIKYLHSG---GLLHRDMKPSNILLNAECHVKVADFGLSRSFV  160 (388)
T ss_dssp             EEHHHHHHHT----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEESS
T ss_pred             cCHHHHHHcC----CCCHHHHHHHHHHHHHHHHHHHhC---CEEeCCCCHHHeEEcCCCCEEecCCccccccc
Confidence            6788888753    488889999999999999999998   99999999999999999999999999998754

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=99.37  E-value=1.6e-12  Score=71.74  Aligned_cols=72  Identities=24%  Similarity=0.407  Sum_probs=61.4

Q ss_pred             CCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCC--eEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            3 RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLS--VVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         3 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      +|+|.+++........+++.....++.|++.++.|+|..   +  ++|+|+++.|++++.+..+++.|||++.....
T Consensus       117 ~g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~  190 (337)
T 3ll6_A          117 KGQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMHRQ---KPPIIHRDLKVENLLLSNQGTIKLCDFGSATTISH  190 (337)
T ss_dssp             SEEHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHTS---SSCCBCCCCCGGGCEECTTSCEEBCCCTTCBCCSS
T ss_pred             CCCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhC---CCCEEEccCCcccEEECCCCCEEEecCccceeccc
Confidence            478888887532222589999999999999999999988   8  99999999999999999999999999876543

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=99.37  E-value=4.1e-12  Score=69.14  Aligned_cols=72  Identities=32%  Similarity=0.476  Sum_probs=62.2

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCC-CCcEEEcccccceecc
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL-NLEASVADFGTARLLH   76 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~i~~~g~~~~~~   76 (84)
                      ++++|.+++........+++.....++.|++.++.|+|..   +++|+|+++.|++++. +..+++.|||++....
T Consensus       102 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~~  174 (295)
T 2clq_A          102 PGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDN---QIVHRDIKGDNVLINTYSGVLKISDFGTSKRLA  174 (295)
T ss_dssp             SEEEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTCCEEECCTTTCEESC
T ss_pred             CCCCHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHhC---CEEccCCChhhEEEECCCCCEEEeecccccccC
Confidence            5789999998764433567888889999999999999998   9999999999999987 7899999999987654

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=99.37  E-value=1.4e-12  Score=71.54  Aligned_cols=74  Identities=27%  Similarity=0.367  Sum_probs=62.8

Q ss_pred             CCCCcHHHHHhcCCCc-------------ccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEc
Q 040123            1 MERGSLFCVLRDDDEA-------------IELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVA   67 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~-------------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~   67 (84)
                      +++|+|.+++......             ..+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.
T Consensus       114 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~i~H~dikp~Nil~~~~~~~kl~  190 (316)
T 2xir_A          114 CKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDLAARNILLSEKNVVKIC  190 (316)
T ss_dssp             CTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEEC
T ss_pred             CCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHhC---CcccccCccceEEECCCCCEEEC
Confidence            3578999999865421             1277889999999999999999998   99999999999999988899999


Q ss_pred             ccccceeccC
Q 040123           68 DFGTARLLHV   77 (84)
Q Consensus        68 ~~g~~~~~~~   77 (84)
                      |||++..+..
T Consensus       191 Dfg~~~~~~~  200 (316)
T 2xir_A          191 DFGLARDIYK  200 (316)
T ss_dssp             CCGGGSCTTT
T ss_pred             CCcccccccc
Confidence            9999876543

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=99.37  E-value=3.5e-12  Score=69.98  Aligned_cols=69  Identities=28%  Similarity=0.372  Sum_probs=60.6

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      ++++|..++....   .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++....
T Consensus        85 ~~~~l~~~~~~~~---~~~~~~~~~i~~~l~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~  153 (311)
T 4agu_A           85 DHTVLHELDRYQR---GVPEHLVKSITWQTLQAVNFCHKH---NCIHRDVKPENILITKHSVIKLCDFGFARLLT  153 (311)
T ss_dssp             SEEHHHHHHHTSS---CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECC
T ss_pred             CCchHHHHHhhhc---CCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCCChhhEEEcCCCCEEEeeCCCchhcc
Confidence            4567777776544   588999999999999999999998   99999999999999999999999999987654

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=99.37  E-value=4.2e-12  Score=70.11  Aligned_cols=70  Identities=29%  Similarity=0.494  Sum_probs=60.4

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCC---cEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNL---EASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~i~~~g~~~~~~   76 (84)
                      +++|+|.+++....   .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+.   .+++.|||++....
T Consensus        96 ~~~~~L~~~~~~~~---~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~  168 (322)
T 2ycf_A           96 MEGGELFDKVVGNK---RLKEATCKLYFYQMLLAVQYLHEN---GIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILG  168 (322)
T ss_dssp             CTTEETHHHHSTTC---CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSSSCCEEECCCTTCEECC
T ss_pred             CCCCcHHHHHhccC---CCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHEEEecCCCCCeEEEccCccceecc
Confidence            35788988887654   588999999999999999999998   999999999999997654   49999999987654

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=99.37  E-value=3.4e-12  Score=73.96  Aligned_cols=71  Identities=27%  Similarity=0.523  Sum_probs=61.2

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeC---CCCcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLD---LNLEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~i~~~g~~~~~~~   77 (84)
                      +++|+|.+++....   .+++.....++.|++.++.|+|..   +++|+|+++.|++++   ....+++.|||++..+..
T Consensus       103 ~~~~~L~~~~~~~~---~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~  176 (486)
T 3mwu_A          103 YTGGELFDEIIKRK---RFSEHDAARIIKQVFSGITYMHKH---NIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQ  176 (486)
T ss_dssp             CCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEESSSSTTCCEEECSCSCTTTBCC
T ss_pred             CCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCchHHEEEecCCCCCCEEEEECCcCeECCC
Confidence            46789998887654   589999999999999999999998   999999999999995   345799999999876543

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=99.37  E-value=5.3e-12  Score=68.41  Aligned_cols=71  Identities=25%  Similarity=0.454  Sum_probs=61.5

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCC----cEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNL----EASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~i~~~g~~~~~~   76 (84)
                      +++++|.+++....   .+++.....++.|++.++.++|..   +++|+|+++.|+++..+.    .+++.|||.+....
T Consensus        90 ~~~~~L~~~l~~~~---~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~~~~kl~dfg~~~~~~  163 (283)
T 3bhy_A           90 VSGGELFDFLAEKE---SLTEDEATQFLKQILDGVHYLHSK---RIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHKIE  163 (283)
T ss_dssp             CCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSSSSCCEEECCCTTCEECC
T ss_pred             cCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCChHHEEEecCCCCCCceEEEecccceecc
Confidence            35789999997644   588999999999999999999998   999999999999997765    79999999987654


Q ss_pred             C
Q 040123           77 V   77 (84)
Q Consensus        77 ~   77 (84)
                      .
T Consensus       164 ~  164 (283)
T 3bhy_A          164 A  164 (283)
T ss_dssp             -
T ss_pred             C
Confidence            3

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=99.36  E-value=2.7e-12  Score=69.30  Aligned_cols=68  Identities=28%  Similarity=0.445  Sum_probs=60.7

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      ++++|.+++....   .+++.....++.|++.++.++|..   +++|+|+++.|++++.+..+++.|||.+..+
T Consensus        88 ~~~~L~~~l~~~~---~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~  155 (276)
T 2yex_A           88 SGGELFDRIEPDI---GMPEPDAQRFFHQLMAGVVYLHGI---GITHRDIKPENLLLDERDNLKISDFGLATVF  155 (276)
T ss_dssp             TTEEGGGGSBTTT---BCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTTCEEC
T ss_pred             CCCcHHHHHhhcc---CCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCChHHEEEccCCCEEEeeCCCcccc
Confidence            4678888886543   588999999999999999999998   9999999999999999999999999988754

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=99.36  E-value=2.7e-12  Score=69.38  Aligned_cols=70  Identities=29%  Similarity=0.557  Sum_probs=62.6

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++++|.+++....   .+++.....++.|++.++.++|..   +++|+|+++.|++++.+..+++.|||++....
T Consensus        93 ~~~~~L~~~l~~~~---~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~  162 (276)
T 2h6d_A           93 VSGGELFDYICKHG---RVEEMEARRLFQQILSAVDYCHRH---MVVHRDLKPENVLLDAHMNAKIADFGLSNMMS  162 (276)
T ss_dssp             CCSCBHHHHHHHHC---SCCHHHHHHHHHHHHHHHHHHHHH---CSSCCCCCGGGEEECTTSCEEECCCCGGGCCC
T ss_pred             cCCCcHHHHHhccC---CCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCChhhEEECCCCCEEEeecccccccC
Confidence            35789999998654   588999999999999999999998   99999999999999999999999999887654

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=99.36  E-value=4.3e-12  Score=70.19  Aligned_cols=71  Identities=32%  Similarity=0.518  Sum_probs=61.8

Q ss_pred             CCCCcHHHHHhcCC-------------CcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEc
Q 040123            1 MERGSLFCVLRDDD-------------EAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVA   67 (84)
Q Consensus         1 ~~~g~L~~~l~~~~-------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~   67 (84)
                      +++|+|.+++....             ....+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.
T Consensus       108 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~~~~~~kL~  184 (327)
T 1fvr_A          108 APHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK---QFIHRDLAARNILVGENYVAKIA  184 (327)
T ss_dssp             CTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECGGGCEEEC
T ss_pred             CCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCccceEEEcCCCeEEEc
Confidence            35789999997653             112588999999999999999999998   99999999999999988899999


Q ss_pred             cccccee
Q 040123           68 DFGTARL   74 (84)
Q Consensus        68 ~~g~~~~   74 (84)
                      |||++..
T Consensus       185 Dfg~~~~  191 (327)
T 1fvr_A          185 DFGLSRG  191 (327)
T ss_dssp             CTTCEES
T ss_pred             ccCcCcc
Confidence            9998864

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=99.36  E-value=3e-12  Score=70.90  Aligned_cols=73  Identities=23%  Similarity=0.424  Sum_probs=61.0

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCC---CCcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL---NLEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~i~~~g~~~~~~~   77 (84)
                      +++|+|.+++..... ..+++.....++.|++.++.|+|..   +++|+|+++.|++++.   ...+++.|||++..+..
T Consensus       111 ~~~~~L~~~~~~~~~-~~~~~~~~~~i~~ql~~~L~~LH~~---givH~Dikp~NIl~~~~~~~~~~kL~Dfg~a~~~~~  186 (327)
T 3lm5_A          111 AAGGEIFSLCLPELA-EMVSENDVIRLIKQILEGVYYLHQN---NIVHLDLKPQNILLSSIYPLGDIKIVDFGMSRKIGH  186 (327)
T ss_dssp             CTTEEGGGGGSSCC--CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESCBTTBCCEEECCGGGCEEC--
T ss_pred             cCCCcHHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHHC---CeecCcCChHHEEEecCCCCCcEEEeeCccccccCC
Confidence            457889888865422 2588999999999999999999998   9999999999999987   67899999999876643

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=99.36  E-value=1.6e-12  Score=74.13  Aligned_cols=71  Identities=20%  Similarity=0.149  Sum_probs=57.7

Q ss_pred             CCcHHHHHhcC----CCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            3 RGSLFCVLRDD----DEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         3 ~g~L~~~l~~~----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++|.+++...    .....+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++....
T Consensus       188 ~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~iiHrDiKp~NILl~~~~~~kL~DFG~a~~~~  262 (413)
T 3dzo_A          188 QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHY---GLVHTYLRPVDIVLDQRGGVFLTGFEHLVRDG  262 (413)
T ss_dssp             SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEECCGGGCEETT
T ss_pred             cCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCcccceEEEecCCeEEEEeccceeecC
Confidence            46777777411    1122466778888889999999999998   99999999999999999999999999987543

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=99.36  E-value=6.5e-12  Score=68.99  Aligned_cols=72  Identities=35%  Similarity=0.474  Sum_probs=62.5

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      +++|+|.+++.....  .+++.....++.+++.++.|+|..   +++|+|+++.|++++.+..+++.|||++..+..
T Consensus       106 ~~~~~L~~~~~~~~~--~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~  177 (314)
T 3com_A          106 CGAGSVSDIIRLRNK--TLTEDEIATILQSTLKGLEYLHFM---RKIHRDIKAGNILLNTEGHAKLADFGVAGQLTD  177 (314)
T ss_dssp             CTTEEHHHHHHHHTC--CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECBT
T ss_pred             CCCCCHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHhC---CCcCCCcCHHHEEECCCCCEEEeecccchhhhh
Confidence            356799998874332  588999999999999999999998   999999999999999999999999999876543

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=99.36  E-value=1.8e-12  Score=71.42  Aligned_cols=73  Identities=26%  Similarity=0.477  Sum_probs=61.6

Q ss_pred             CCCCcHHHHHhcCCC-------cccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccce
Q 040123            1 MERGSLFCVLRDDDE-------AIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTAR   73 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~-------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~   73 (84)
                      +++|+|.+++.....       ...++......++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++.
T Consensus       110 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~NIli~~~~~~kl~Dfg~~~  186 (322)
T 1p4o_A          110 MTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIGDFGMTR  186 (322)
T ss_dssp             CTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCSGGGEEECTTCCEEECCTTCCC
T ss_pred             CCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHHC---CCccCCCccceEEEcCCCeEEECcCcccc
Confidence            357899998875321       11467889999999999999999998   99999999999999999999999999987


Q ss_pred             ecc
Q 040123           74 LLH   76 (84)
Q Consensus        74 ~~~   76 (84)
                      ...
T Consensus       187 ~~~  189 (322)
T 1p4o_A          187 DIY  189 (322)
T ss_dssp             GGG
T ss_pred             ccc
Confidence            543

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=99.36  E-value=4.5e-12  Score=69.69  Aligned_cols=76  Identities=28%  Similarity=0.390  Sum_probs=58.7

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCc-EEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLE-ASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~i~~~g~~~~~~   76 (84)
                      +++|+|.+++........+.......++.|++.++.|+|.....+++|+|+++.|++++.+.. +++.|||++....
T Consensus        81 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~~~  157 (307)
T 2eva_A           81 AEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQ  157 (307)
T ss_dssp             CTTCBHHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC-----
T ss_pred             CCCCCHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEcccccccccc
Confidence            467899999987654334678888999999999999999821128999999999999987665 7999999886543

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=99.36  E-value=9.4e-12  Score=68.74  Aligned_cols=69  Identities=20%  Similarity=0.354  Sum_probs=58.9

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCC-cEEEcccccceeccCC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNL-EASVADFGTARLLHVD   78 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~i~~~g~~~~~~~~   78 (84)
                      +++++|..++.      .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+. .+++.|||++......
T Consensus       115 ~~~~~l~~~~~------~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~  184 (330)
T 3nsz_A          115 VNNTDFKQLYQ------TLTDYDIRFYMYEILKALDYCHSM---GIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPG  184 (330)
T ss_dssp             CCCCCHHHHGG------GCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTTEEEECCCTTCEECCTT
T ss_pred             cCchhHHHHHH------hCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEEcCCCCEEEEEeCCCceEcCCC
Confidence            35678887775      377888999999999999999998   999999999999998665 8999999999866543

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=99.35  E-value=2.8e-12  Score=70.55  Aligned_cols=70  Identities=30%  Similarity=0.415  Sum_probs=59.4

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++++|.+++....   .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++....
T Consensus       116 ~~~~~L~~~l~~~~---~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~NIl~~~~~~~kl~Dfg~~~~~~  185 (309)
T 2h34_A          116 INGVDLAAMLRRQG---PLAPPRAVAIVRQIGSALDAAHAA---GATHRDVKPENILVSADDFAYLVDFGIASATT  185 (309)
T ss_dssp             CCCEEHHHHHHHHC---SCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECSCCC-----
T ss_pred             cCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---cCCcCCCChHHEEEcCCCCEEEecCccCcccc
Confidence            35789999998654   588999999999999999999998   99999999999999999999999999876543

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=99.35  E-value=8.7e-12  Score=70.20  Aligned_cols=67  Identities=24%  Similarity=0.430  Sum_probs=60.2

Q ss_pred             CCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            3 RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         3 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++|.+++...    .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||+++...
T Consensus       113 ~~~L~~~~~~~----~l~~~~~~~~~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~  179 (367)
T 1cm8_A          113 GTDLGKLMKHE----KLGEDRIQFLVYQMLKGLRYIHAA---GIIHRDLKPGNLAVNEDCELKILDFGLARQAD  179 (367)
T ss_dssp             SEEHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEECC
T ss_pred             CCCHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHHC---CccccCcCHHHEEEcCCCCEEEEeeecccccc
Confidence            56888888753    488999999999999999999998   99999999999999999999999999988754

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=99.35  E-value=2.6e-12  Score=70.54  Aligned_cols=70  Identities=33%  Similarity=0.426  Sum_probs=62.2

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeC-CCCcEEEcccccceeccC
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLD-LNLEASVADFGTARLLHV   77 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~i~~~g~~~~~~~   77 (84)
                      .+++|.+++....   .+++.....++.|++.++.|+|..   +++|+|+++.|++++ .+..+++.|||++.....
T Consensus       122 ~~~~L~~~l~~~~---~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~kl~dfg~~~~~~~  192 (312)
T 2iwi_A          122 PAQDLFDYITEKG---PLGEGPSRCFFGQVVAAIQHCHSR---GVVHRDIKDENILIDLRRGCAKLIDFGSGALLHD  192 (312)
T ss_dssp             SEEEHHHHHHHHC---SCCHHHHHHHHHHHHHHHHHHHHH---TEECCCCSGGGEEEETTTTEEEECCCSSCEECCS
T ss_pred             CCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCChhhEEEeCCCCeEEEEEcchhhhccc
Confidence            4688999998654   588999999999999999999998   999999999999998 778899999999877643

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=99.35  E-value=1.1e-11  Score=68.16  Aligned_cols=72  Identities=21%  Similarity=0.328  Sum_probs=61.4

Q ss_pred             CCCCcHHHHHhcCC-CcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            1 MERGSLFCVLRDDD-EAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         1 ~~~g~L~~~l~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      +++|+|.+++.... ....+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||.+...
T Consensus       112 ~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~dlkp~NIl~~~~~~~kl~dfg~~~~~  184 (317)
T 2buj_A          112 FKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHAK---GYAHRDLKPTNILLGDEGQPVLMDLGSMNQA  184 (317)
T ss_dssp             CTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCCSSCEES
T ss_pred             CCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEEcCCCCEEEEecCcchhc
Confidence            35789998887521 112588999999999999999999998   9999999999999999999999999976543

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=99.35  E-value=1.1e-11  Score=67.86  Aligned_cols=70  Identities=34%  Similarity=0.535  Sum_probs=61.9

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      +++++|.+++...    .+++.....++.|++.++.++|..   +++|+|+++.|++++.+..+++.|||++..+..
T Consensus       102 ~~~~~L~~~~~~~----~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~  171 (303)
T 3a7i_A          102 LGGGSALDLLEPG----PLDETQIATILREILKGLDYLHSE---KKIHRDIKAANVLLSEHGEVKLADFGVAGQLTD  171 (303)
T ss_dssp             CTTEEHHHHHTTS----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECBT
T ss_pred             CCCCcHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCChheEEECCCCCEEEeecccceecCc
Confidence            3567899988652    588999999999999999999998   999999999999999999999999999876543

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=99.35  E-value=1.1e-11  Score=69.10  Aligned_cols=68  Identities=24%  Similarity=0.427  Sum_probs=59.5

Q ss_pred             CcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            4 GSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         4 g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      |++...+.....  .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++..+.
T Consensus       108 ~~l~~~l~~~~~--~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~  175 (351)
T 3mi9_A          108 HDLAGLLSNVLV--KFTLSEIKRVMQMLLNGLYYIHRN---KILHRDMKAANVLITRDGVLKLADFGLARAFS  175 (351)
T ss_dssp             EEHHHHHHCTTS--CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECC
T ss_pred             CCHHHHHhhccC--CCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCHHHEEEcCCCCEEEccchhccccc
Confidence            466777765433  588999999999999999999998   99999999999999999999999999987654

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=99.35  E-value=3.8e-12  Score=70.20  Aligned_cols=72  Identities=31%  Similarity=0.448  Sum_probs=60.9

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++|+|.+++..... ..+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++..+.
T Consensus       109 ~~~~~L~~~l~~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~  180 (326)
T 2x7f_A          109 CGAGSVTDLIKNTKG-NTLKEEWIAYICREILRGLSHLHQH---KVIHRDIKGQNVLLTENAEVKLVDFGVSAQLD  180 (326)
T ss_dssp             CTTEEHHHHHHHSGG-GCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTCCEEECCCTTTC---
T ss_pred             CCCCcHHHHHHhccc-CCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCcHHHEEEcCCCCEEEeeCcCceecC
Confidence            356799999986532 2588899999999999999999998   99999999999999999999999999887653

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=99.34  E-value=1e-12  Score=72.74  Aligned_cols=73  Identities=26%  Similarity=0.415  Sum_probs=61.7

Q ss_pred             CCCCcHHHHHhcCCC-----------cccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEccc
Q 040123            1 MERGSLFCVLRDDDE-----------AIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADF   69 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~-----------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~   69 (84)
                      +++|+|.+++.....           ...+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.||
T Consensus       132 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~NIl~~~~~~~kl~Df  208 (333)
T 2i1m_A          132 CCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASK---NCIHRDVAARNVLLTNGHVAKIGDF  208 (333)
T ss_dssp             CTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGCEEEGGGEEEBCCC
T ss_pred             CCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhcC---CcccCCcccceEEECCCCeEEECcc
Confidence            357899998875321           11478889999999999999999998   9999999999999998899999999


Q ss_pred             ccceecc
Q 040123           70 GTARLLH   76 (84)
Q Consensus        70 g~~~~~~   76 (84)
                      |++....
T Consensus       209 g~~~~~~  215 (333)
T 2i1m_A          209 GLARDIM  215 (333)
T ss_dssp             GGGCCGG
T ss_pred             ccccccc
Confidence            9987654

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=99.33  E-value=8.9e-12  Score=68.97  Aligned_cols=69  Identities=29%  Similarity=0.393  Sum_probs=60.2

Q ss_pred             CCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            3 RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         3 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      .|+|.+++.....  .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++....
T Consensus        83 ~~~l~~~~~~~~~--~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~  151 (324)
T 3mtl_A           83 DKDLKQYLDDCGN--IINMHNVKLFLFQLLRGLAYCHRQ---KVLHRDLKPQNLLINERGELKLADFGLARAKS  151 (324)
T ss_dssp             SEEHHHHHHHTTT--CCCHHHHHHHHHHHHHHHHHHHHT---TEEESSCCGGGEEECTTCCEEECSSSEEECC-
T ss_pred             ccCHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHHC---CccCCCcCHHHEEECCCCCEEEccCccccccc
Confidence            3678888876543  588899999999999999999998   99999999999999999999999999987543

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=99.33  E-value=2.4e-12  Score=72.41  Aligned_cols=72  Identities=31%  Similarity=0.488  Sum_probs=60.3

Q ss_pred             CCCCcHHHHHhcCCC----cccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCC---CcEEEcccccce
Q 040123            1 MERGSLFCVLRDDDE----AIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLN---LEASVADFGTAR   73 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~i~~~g~~~   73 (84)
                      +++|+|.+++.....    ...+++.....++.|++.++.|+|..   +++|+|+++.|++++..   ..+++.|||+++
T Consensus       156 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~~~~kL~DFG~a~  232 (367)
T 3l9p_A          156 MAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCPGPGRVAKIGDFGMAR  232 (367)
T ss_dssp             CTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSSTTCCEEECCCHHHH
T ss_pred             CCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChhhEEEecCCCCceEEECCCcccc
Confidence            457899999986431    12488899999999999999999999   99999999999999844   459999999986


Q ss_pred             ec
Q 040123           74 LL   75 (84)
Q Consensus        74 ~~   75 (84)
                      .+
T Consensus       233 ~~  234 (367)
T 3l9p_A          233 DI  234 (367)
T ss_dssp             HH
T ss_pred             cc
Confidence            43

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=99.32  E-value=9.4e-12  Score=68.78  Aligned_cols=68  Identities=32%  Similarity=0.406  Sum_probs=60.6

Q ss_pred             CcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeC-CCCcEEEcccccceeccC
Q 040123            4 GSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLD-LNLEASVADFGTARLLHV   77 (84)
Q Consensus         4 g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~i~~~g~~~~~~~   77 (84)
                      ++|.+++....   .+++.....++.|++.++.|+|..   +++|+|+++.|++++ .+..+++.|||++.....
T Consensus       134 ~~L~~~l~~~~---~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~~kL~Dfg~~~~~~~  202 (320)
T 3a99_A          134 QDLFDFITERG---ALQEELARSFFWQVLEAVRHCHNC---GVLHRDIKDENILIDLNRGELKLIDFGSGALLKD  202 (320)
T ss_dssp             EEHHHHHHHHC---SCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTTEEEECCCTTCEECCS
T ss_pred             ccHHHHHhccC---CCCHHHHHHHHHHHHHHHHHHHHC---CcEeCCCCHHHEEEeCCCCCEEEeeCcccccccc
Confidence            78999888654   588999999999999999999998   999999999999998 678899999999876643

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=99.32  E-value=1.3e-11  Score=69.25  Aligned_cols=68  Identities=26%  Similarity=0.522  Sum_probs=60.3

Q ss_pred             CCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            3 RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         3 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      +|+|.+++...    .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++.....
T Consensus       113 ~~~L~~~l~~~----~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~  180 (364)
T 3qyz_A          113 ETDLYKLLKTQ----HLSNDHICYFLYQILRGLKYIHSA---NVLHRDLKPSNLLLNTTCDLKICDFGLARVADP  180 (364)
T ss_dssp             SEEHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEECCG
T ss_pred             CcCHHHHHHhC----CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCChHhEEECCCCCEEEEeCcceEecCC
Confidence            46788888753    488999999999999999999998   999999999999999999999999999876543

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=99.32  E-value=2.9e-11  Score=66.73  Aligned_cols=71  Identities=20%  Similarity=0.374  Sum_probs=60.6

Q ss_pred             CCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCC-------------------CCc
Q 040123            3 RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL-------------------NLE   63 (84)
Q Consensus         3 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------------------~~~   63 (84)
                      +++|.+++..... ..+++.....++.|++.++.|+|..   +++|+|+++.|++++.                   +..
T Consensus       100 ~~~l~~~l~~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~~~~~~~~~~~~~~~~  175 (339)
T 1z57_A          100 GLSTYDFIKENGF-LPFRLDHIRKMAYQICKSVNFLHSN---KLTHTDLKPENILFVQSDYTEAYNPKIKRDERTLINPD  175 (339)
T ss_dssp             CCBHHHHHHHTTT-CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESCCCEEEEEC----CEEEEESCCC
T ss_pred             CCCHHHHHHhcCC-CCCcHHHHHHHHHHHHHHHHHHHHC---CCcCCCCCHHHEEEeccccccccCCccccccccccCCC
Confidence            6789998876542 2478899999999999999999998   9999999999999976                   557


Q ss_pred             EEEcccccceeccC
Q 040123           64 ASVADFGTARLLHV   77 (84)
Q Consensus        64 ~~i~~~g~~~~~~~   77 (84)
                      +++.|||++.....
T Consensus       176 ~kl~Dfg~~~~~~~  189 (339)
T 1z57_A          176 IKVVDFGSATYDDE  189 (339)
T ss_dssp             EEECCCSSCEETTS
T ss_pred             ceEeeCcccccCcc
Confidence            89999999876543

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=99.32  E-value=1.9e-11  Score=70.07  Aligned_cols=70  Identities=23%  Similarity=0.390  Sum_probs=60.2

Q ss_pred             CCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCc--EEEcccccceecc
Q 040123            3 RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLE--ASVADFGTARLLH   76 (84)
Q Consensus         3 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~i~~~g~~~~~~   76 (84)
                      +++|.+++...... .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..  +++.|||++....
T Consensus       182 ~~~L~~~l~~~~~~-~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlKp~NILl~~~~~~~vkL~DFG~a~~~~  253 (429)
T 3kvw_A          182 SMNLYELIKKNKFQ-GFSLPLVRKFAHSILQCLDALHKN---RIIHCDLKPENILLKQQGRSGIKVIDFGSSCYEH  253 (429)
T ss_dssp             CCBHHHHHHHTTTC-CCCHHHHHHHHHHHHHHHHHHHHH---TEECSCCSGGGEEESSTTSCCEEECCCTTCEETT
T ss_pred             CCCHHHHHHhccCC-CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEEccCCCcceEEeecccceecC
Confidence            46888888865432 488999999999999999999998   9999999999999988765  9999999987654

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=99.31  E-value=1e-11  Score=67.63  Aligned_cols=73  Identities=29%  Similarity=0.471  Sum_probs=59.2

Q ss_pred             CCCCcHHHHHhcCC-CcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeC---CCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDD-EAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLD---LNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~i~~~g~~~~~~   76 (84)
                      +++|+|.+++.... ....+++.....++.|++.++.|+|..   +++|+|+++.|+++.   ....+++.|||++..+.
T Consensus       102 ~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~~~~  178 (285)
T 3is5_A          102 CEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFHSQ---HVVHKDLKPENILFQDTSPHSPIKIIDFGLAELFK  178 (285)
T ss_dssp             CSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEESSSSTTCCEEECCCCCCCC--
T ss_pred             CCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHHhC---CEEECCCCHHHEEEecCCCCCCEEEEeeecceecC
Confidence            35789998886431 112588999999999999999999998   999999999999994   45679999999987654

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=99.31  E-value=1e-11  Score=68.05  Aligned_cols=69  Identities=26%  Similarity=0.506  Sum_probs=60.6

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEe---CCCCcEEEcccccceec
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILL---DLNLEASVADFGTARLL   75 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~i~~~g~~~~~   75 (84)
                      +++|+|.+++....   .+++.....++.|++.++.|+|..   +++|+|+++.|+++   +.+..+++.|||++...
T Consensus        88 ~~~~~L~~~l~~~~---~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~~  159 (304)
T 2jam_A           88 VSGGELFDRILERG---VYTEKDASLVIQQVLSAVKYLHEN---GIVHRDLKPENLLYLTPEENSKIMITDFGLSKME  159 (304)
T ss_dssp             CCSCBHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCSCCGGGCEESSSSTTCCEEBCSCSTTCCC
T ss_pred             CCCccHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEecCCCCCCEEEccCCcceec
Confidence            35789999887654   588999999999999999999998   99999999999999   66788999999987654

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=99.31  E-value=6.5e-12  Score=68.42  Aligned_cols=67  Identities=28%  Similarity=0.430  Sum_probs=59.1

Q ss_pred             CcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            4 GSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         4 g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      ++|.+++.....  .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++...
T Consensus        84 ~~l~~~~~~~~~--~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~  150 (288)
T 1ob3_A           84 QDLKKLLDVCEG--GLESVTAKSFLLQLLNGIAYCHDR---RVLHRDLKPQNLLINREGELKIADFGLARAF  150 (288)
T ss_dssp             EEHHHHHHTSTT--CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECCTTHHHHH
T ss_pred             CCHHHHHHhccc--CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCCEEEeECcccccc
Confidence            578888776433  588899999999999999999998   9999999999999999999999999988654

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=99.30  E-value=2.7e-12  Score=69.53  Aligned_cols=71  Identities=30%  Similarity=0.430  Sum_probs=58.1

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      ++|+|.+++..... ..+++.....++.|++.++.++|..   +++|+|+++.|++++.+..+++.|||++....
T Consensus        98 ~~~~L~~~l~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~  168 (278)
T 1byg_A           98 AKGSLVDYLRSRGR-SVLGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSEDNVAKVSDFGLTKEAS  168 (278)
T ss_dssp             TTEEHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTSCEEECCCCC-----
T ss_pred             CCCCHHHHHHhccc-ccCCHHHHHHHHHHHHHHHHHHHhC---CccccCCCcceEEEeCCCcEEEeecccccccc
Confidence            46799999876432 1378888999999999999999998   99999999999999999999999999886543

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=99.30  E-value=1.3e-11  Score=66.47  Aligned_cols=72  Identities=32%  Similarity=0.484  Sum_probs=56.2

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCC--------CCcEEEcccccc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL--------NLEASVADFGTA   72 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~~~i~~~g~~   72 (84)
                      +++++|.+++...    .+++.....++.|++.++.|+|..+..+++|+|+++.|++++.        ...+++.|||.+
T Consensus        88 ~~~~~L~~~~~~~----~~~~~~~~~i~~~l~~~l~~lH~~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~Dfg~~  163 (271)
T 3dtc_A           88 ARGGPLNRVLSGK----RIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLA  163 (271)
T ss_dssp             CTTEEHHHHHTSS----CCCHHHHHHHHHHHHHHHHHHHHSSSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEECCCCC-
T ss_pred             CCCCCHHHHhhcC----CCCHHHHHHHHHHHHHHHHHHHhCCCCceeecCCchHHEEEecccccccccCcceEEccCCcc
Confidence            3578898888643    5889999999999999999999981112899999999999975        567999999998


Q ss_pred             eecc
Q 040123           73 RLLH   76 (84)
Q Consensus        73 ~~~~   76 (84)
                      ..+.
T Consensus       164 ~~~~  167 (271)
T 3dtc_A          164 REWH  167 (271)
T ss_dssp             ----
T ss_pred             cccc
Confidence            7654

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=99.30  E-value=8.4e-12  Score=68.63  Aligned_cols=69  Identities=28%  Similarity=0.542  Sum_probs=57.3

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      +++++|.+++.....  .+++.....++.|++.++.|+|..   +++|+|+++.|++++ +..+++.|||++...
T Consensus       111 ~~~~~L~~~l~~~~~--~~~~~~~~~i~~qi~~al~~lH~~---~i~H~dlkp~NIl~~-~~~~~l~Dfg~~~~~  179 (319)
T 2y4i_B          111 CKGRTLYSVVRDAKI--VLDVNKTRQIAQEIVKGMGYLHAK---GILHKDLKSKNVFYD-NGKVVITDFGLFSIS  179 (319)
T ss_dssp             CCSEEHHHHTTSSCC--CCCSHHHHHHHHHHHHHHHHHHHT---TCCCCCCCSTTEEEC---CCEECCCSCCC--
T ss_pred             ccCCcHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHhC---CccccCCChhhEEEe-CCCEEEeecCCcccc
Confidence            357899999876442  578899999999999999999998   999999999999998 568899999986543

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=99.29  E-value=4.9e-11  Score=66.24  Aligned_cols=70  Identities=29%  Similarity=0.466  Sum_probs=59.0

Q ss_pred             CCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEe-------------------CCCCc
Q 040123            3 RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILL-------------------DLNLE   63 (84)
Q Consensus         3 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------~~~~~   63 (84)
                      ++++.+++...... .+++.....++.|++.++.|+|..   +++|+|+++.|+++                   .....
T Consensus       105 ~~~l~~~l~~~~~~-~~~~~~~~~i~~qi~~~L~~lH~~---~ivH~Dlkp~NIll~~~~~~~~~~~~~~~~~~~~~~~~  180 (355)
T 2eu9_A          105 GKNTFEFLKENNFQ-PYPLPHVRHMAYQLCHALRFLHEN---QLTHTDLKPENILFVNSEFETLYNEHKSCEEKSVKNTS  180 (355)
T ss_dssp             CCBHHHHHHHTTTC-CCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEESCCCEEEEECCC-CCCEEEESCCC
T ss_pred             CCChHHHHHhccCC-CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEecccccccccccccccccccCCCc
Confidence            56777777654322 588999999999999999999988   99999999999999                   45678


Q ss_pred             EEEcccccceecc
Q 040123           64 ASVADFGTARLLH   76 (84)
Q Consensus        64 ~~i~~~g~~~~~~   76 (84)
                      +++.|||++....
T Consensus       181 ~kl~Dfg~~~~~~  193 (355)
T 2eu9_A          181 IRVADFGSATFDH  193 (355)
T ss_dssp             EEECCCTTCEETT
T ss_pred             EEEeecCcccccc
Confidence            9999999987654

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=99.29  E-value=1.2e-11  Score=71.51  Aligned_cols=66  Identities=24%  Similarity=0.425  Sum_probs=54.1

Q ss_pred             CcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            4 GSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         4 g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      |++.+.+..     .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||+++....
T Consensus       151 ~~l~~~~~~-----~l~~~~~~~~~~qil~aL~~lH~~---~iiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~  216 (464)
T 3ttj_A          151 ANLCQVIQM-----ELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLARTAGT  216 (464)
T ss_dssp             EEHHHHHTS-----CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCCCC-----
T ss_pred             CCHHHHHhh-----cCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChHhEEEeCCCCEEEEEEEeeeecCC
Confidence            455565543     378888999999999999999998   999999999999999999999999999876543

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=99.29  E-value=2.3e-11  Score=73.19  Aligned_cols=74  Identities=27%  Similarity=0.414  Sum_probs=62.8

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCC---cEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNL---EASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~i~~~g~~~~~~~   77 (84)
                      +++|+|.+++........+++.....++.+++.++.|+|..   +++|+|+++.|++++.+.   .+++.|||.+.....
T Consensus       100 ~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~yLHs~---gIVHrDLKP~NILl~~~g~~~~vKL~DFG~a~~~~~  176 (676)
T 3qa8_A          100 CEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHEN---RIIHRDLKPENIVLQPGPQRLIHKIIDLGYAKELDQ  176 (676)
T ss_dssp             CSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHHHHHT---TBCCCCCCSTTEEEECCSSSCEEEECSCCCCCBTTS
T ss_pred             CCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCCHHHeEeecCCCceeEEEccccccccccc
Confidence            45889999998765433578888999999999999999998   999999999999998554   389999999877544

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=99.29  E-value=2.2e-11  Score=67.14  Aligned_cols=70  Identities=29%  Similarity=0.407  Sum_probs=61.3

Q ss_pred             CCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            3 RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         3 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      .|+|.+++...... .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++....
T Consensus       102 ~~~L~~~l~~~~~~-~~~~~~~~~~~~qi~~~l~~lH~~---gi~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~  171 (326)
T 1blx_A          102 DQDLTTYLDKVPEP-GVPTETIKDMMFQLLRGLDFLHSH---RVVHRDLKPQNILVTSSGQIKLADFGLARIYS  171 (326)
T ss_dssp             SCBHHHHHHHSCTT-CSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECSCCSCCCCC
T ss_pred             CCCHHHHHHhcccC-CCCHHHHHHHHHHHHHHHHHHHHC---CceeccCCHHHeEEcCCCCEEEecCccccccc
Confidence            36888988865432 488999999999999999999998   99999999999999999999999999987654

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=99.29  E-value=1e-11  Score=68.77  Aligned_cols=69  Identities=23%  Similarity=0.352  Sum_probs=56.7

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      ++++|..++....   .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++..+.
T Consensus       107 ~~~~l~~~~~~~~---~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~  175 (331)
T 4aaa_A          107 DHTILDDLELFPN---GLDYQVVQKYLFQIINGIGFCHSH---NIIHRDIKPENILVSQSGVVKLCDFGFARTLA  175 (331)
T ss_dssp             SEEHHHHHHHSTT---CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCTTC----
T ss_pred             CcchHHHHHhhcc---CCCHHHHHHHHHHHHHHHHHHHHC---CEEccCcChheEEEcCCCcEEEEeCCCceeec
Confidence            3456666655433   588999999999999999999998   99999999999999999999999999986543

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=99.29  E-value=1e-11  Score=69.23  Aligned_cols=68  Identities=31%  Similarity=0.455  Sum_probs=59.2

Q ss_pred             CcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            4 GSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         4 g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      |+|..++.....  .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++..+.
T Consensus        96 ~~l~~~~~~~~~--~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~  163 (346)
T 1ua2_A           96 TDLEVIIKDNSL--VLTPSHIKAYMLMTLQGLEYLHQH---WILHRDLKPNNLLLDENGVLKLADFGLAKSFG  163 (346)
T ss_dssp             EEHHHHHTTCCS--SCCSSHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECCCGGGSTTT
T ss_pred             CCHHHHHHhcCc--CCCHHHHHHHHHHHHHHHHHHHHC---CEECCCCCHHHEEEcCCCCEEEEecccceecc
Confidence            477777765433  577888899999999999999998   99999999999999999999999999987654

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=99.29  E-value=7.5e-12  Score=68.38  Aligned_cols=68  Identities=25%  Similarity=0.495  Sum_probs=59.9

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccce
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTAR   73 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~   73 (84)
                      +++++|..++.....  .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++.
T Consensus        98 ~~~~~l~~~~~~~~~--~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~  165 (302)
T 2j7t_A           98 CPGGAVDAIMLELDR--GLTEPQIQVVCRQMLEALNFLHSK---RIIHRDLKAGNVLMTLEGDIRLADFGVSA  165 (302)
T ss_dssp             CTTEEHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTSCEEECCCHHHH
T ss_pred             CCCCcHHHHHHhhcc--CCCHHHHHHHHHHHHHHHHHHhcC---CcccCCCCHHHEEECCCCCEEEEECCCCc
Confidence            357888888876433  588999999999999999999998   99999999999999999999999999764

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=99.29  E-value=1.1e-11  Score=69.34  Aligned_cols=69  Identities=30%  Similarity=0.468  Sum_probs=60.8

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhc-CCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHH-DCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      +++|+|.+++....   .+++.....++.+++.++.|+|. .   +++|+|+++.|++++.+..+++.|||++..+
T Consensus       113 ~~~~~L~~~l~~~~---~~~~~~~~~i~~~i~~~l~~lh~~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~  182 (360)
T 3eqc_A          113 MDGGSLDQVLKKAG---RIPEQILGKVSIAVIKGLTYLREKH---KIMHRDVKPSNILVNSRGEIKLCDFGVSGQL  182 (360)
T ss_dssp             CTTCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHHH---CCCCSCCSGGGEEECTTCCEEECCCCCCHHH
T ss_pred             CCCCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHhC---CEEcCCccHHHEEECCCCCEEEEECCCCccc
Confidence            45789999998754   58899999999999999999997 4   6999999999999999999999999987543

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=99.29  E-value=1.5e-11  Score=68.76  Aligned_cols=68  Identities=31%  Similarity=0.366  Sum_probs=57.2

Q ss_pred             CCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            3 RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         3 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      .|+|.+++.....  .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++...
T Consensus       117 ~~~l~~~~~~~~~--~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~  184 (362)
T 3pg1_A          117 RTDLAQVIHDQRI--VISPQHIQYFMYHILLGLHVLHEA---GVVHRDLHPGNILLADNNDITICDFNLARED  184 (362)
T ss_dssp             SEEHHHHHHCTTS--CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECCTTC----
T ss_pred             CCCHHHHHHhccc--CCCHHHHHHHHHHHHHHHHHHHHC---cCEecCCChHHEEEcCCCCEEEEecCccccc
Confidence            3678888775433  588999999999999999999999   9999999999999999999999999998644

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=99.29  E-value=1.2e-11  Score=69.23  Aligned_cols=68  Identities=28%  Similarity=0.467  Sum_probs=59.3

Q ss_pred             CcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            4 GSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         4 g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      |++.+++.....  .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++....
T Consensus       138 g~l~~~l~~~~~--~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~  205 (348)
T 1u5q_A          138 GSASDLLEVHKK--PLQEVEIAAVTHGALQGLAYLHSH---NMIHRDVKAGNILLSEPGLVKLGDFGSASIMA  205 (348)
T ss_dssp             EEHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEEETTTEEEECCCTTCBSSS
T ss_pred             CCHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEECCCCCEEEeeccCceecC
Confidence            677777754332  588999999999999999999998   99999999999999999999999999987654

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=99.29  E-value=1.3e-11  Score=67.33  Aligned_cols=72  Identities=29%  Similarity=0.538  Sum_probs=61.0

Q ss_pred             CCCCcHHHHHhcC-----CCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            1 MERGSLFCVLRDD-----DEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         1 ~~~g~L~~~l~~~-----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      +++|+|.+++...     .....+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++...
T Consensus        95 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~  171 (303)
T 2vwi_A           95 LSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKN---GQIHRDVKAGNILLGEDGSVQIADFGVSAFL  171 (303)
T ss_dssp             CTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTCCEEECCCHHHHHC
T ss_pred             ccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHhC---CCCCCCCChhhEEEcCCCCEEEEeccchhee
Confidence            3578999888741     0112588999999999999999999998   9999999999999999999999999987654

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=99.28  E-value=4.1e-11  Score=66.17  Aligned_cols=70  Identities=20%  Similarity=0.337  Sum_probs=59.8

Q ss_pred             CcHHHHHhcCC---CcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            4 GSLFCVLRDDD---EAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         4 g~L~~~l~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      |+|.+++....   ....+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++....
T Consensus        87 ~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~  159 (317)
T 2pmi_A           87 NDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHEN---KILHRDLKPQNLLINKRGQLKLGDFGLARAFG  159 (317)
T ss_dssp             CBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCSSCEETT
T ss_pred             CCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCChHHeEEcCCCCEEECcCccceecC
Confidence            67888876432   112478889999999999999999998   99999999999999999999999999987654

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=99.28  E-value=2.4e-11  Score=67.65  Aligned_cols=66  Identities=29%  Similarity=0.470  Sum_probs=59.3

Q ss_pred             CcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            4 GSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         4 g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      |+|.+++...    .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++..+.
T Consensus        98 ~~L~~~~~~~----~~~~~~~~~~~~qi~~~L~~LH~~---~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~  163 (353)
T 2b9h_A           98 TDLHRVISTQ----MLSDDHIQYFIYQTLRAVKVLHGS---NVIHRDLKPSNLLINSNCDLKVCDFGLARIID  163 (353)
T ss_dssp             EEHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEECCCTTCEECC
T ss_pred             ccHHHHHhhc----CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEEcCCCcEEEEecccccccc
Confidence            6788887753    488999999999999999999998   99999999999999999999999999987654

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=99.28  E-value=1.1e-11  Score=68.88  Aligned_cols=72  Identities=31%  Similarity=0.511  Sum_probs=60.7

Q ss_pred             CCCCcHHHH------HhcCCCcccCCHHHHHHHHHHHHHHHHHHhc-CCCCCeEecCCCCCcEEeCCCCcEEEcccccce
Q 040123            1 MERGSLFCV------LRDDDEAIELNWTKRVSIVKSVAHALSYLHH-DCTLSVVHRDISSNNILLDLNLEASVADFGTAR   73 (84)
Q Consensus         1 ~~~g~L~~~------l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~   73 (84)
                      +++|+|.++      +.... ...+++.....++.|++.++.|+|. .   +++|+|+++.|++++.+..+++.|||.+.
T Consensus       125 ~~~~~L~~~~~~~~~l~~~~-~~~~~~~~~~~i~~qi~~~l~~lH~~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~  200 (348)
T 2pml_X          125 MENDSILKFDEYFFVLDKNY-TCFIPIQVIKCIIKSVLNSFSYIHNEK---NICHRDVKPSNILMDKNGRVKLSDFGESE  200 (348)
T ss_dssp             CTTCBSSEESSSEESSCSSS-CCCCCHHHHHHHHHHHHHHHHHHHHTS---CEECCCCCGGGEEECTTSCEEECCCTTCE
T ss_pred             cCCCcHHHHHHHhhhhhhcc-ccCCCHHHHHHHHHHHHHHHHHHhccC---CEeecCCChHhEEEcCCCcEEEecccccc
Confidence            356788877      54421 2268899999999999999999998 8   99999999999999999999999999987


Q ss_pred             ecc
Q 040123           74 LLH   76 (84)
Q Consensus        74 ~~~   76 (84)
                      ...
T Consensus       201 ~~~  203 (348)
T 2pml_X          201 YMV  203 (348)
T ss_dssp             ECB
T ss_pred             ccc
Confidence            653

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=99.28  E-value=3.9e-11  Score=64.50  Aligned_cols=70  Identities=19%  Similarity=0.363  Sum_probs=59.8

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCC--eEecCCCCCcEEeCCCCcEEEccccccee
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLS--VVHRDISSNNILLDLNLEASVADFGTARL   74 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~i~~~g~~~~   74 (84)
                      +++|+|.+++..... ..+++.....++.|++.++.|+|..   +  ++|+|+++.|++++.+...++.+++++..
T Consensus        91 ~~~~~L~~~l~~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~---~~~i~H~dikp~Nil~~~~~~~~l~~~~~~~~  162 (271)
T 3kmu_A           91 MPYGSLYNVLHEGTN-FVVDQSQAVKFALDMARGMAFLHTL---EPLIPRHALNSRSVMIDEDMTARISMADVKFS  162 (271)
T ss_dssp             CTTCBHHHHHHSCSS-CCCCHHHHHHHHHHHHHHHHHHTTS---SSCCTTCCCSGGGEEECTTSCEEEEGGGSCCT
T ss_pred             cCCCcHHHHHhhccc-CCCCHHHHHHHHHHHHHHHHHHhcC---CCceecCCCccceEEEcCCcceeEEeccceee
Confidence            457899999986543 2488999999999999999999987   7  99999999999999888888887776543

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=99.27  E-value=1.7e-11  Score=69.56  Aligned_cols=58  Identities=28%  Similarity=0.435  Sum_probs=52.7

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeC-CCCcEEEcccccceeccCC
Q 040123           18 ELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLD-LNLEASVADFGTARLLHVD   78 (84)
Q Consensus        18 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~i~~~g~~~~~~~~   78 (84)
                      .+++.....++.|++.++.|+|..   +++|+|+++.|++++ .+..+++.|||+++.+...
T Consensus       137 ~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~~kL~DFG~a~~~~~~  195 (394)
T 4e7w_A          137 TMPMLLIKLYMYQLLRSLAYIHSI---GICHRDIKPQNLLLDPPSGVLKLIDFGSAKILIAG  195 (394)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEETTTTEEEECCCTTCEECCTT
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCCHHHEEEcCCCCcEEEeeCCCcccccCC
Confidence            588899999999999999999998   999999999999998 6889999999999876443

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=99.27  E-value=2.9e-11  Score=66.34  Aligned_cols=73  Identities=19%  Similarity=0.300  Sum_probs=56.9

Q ss_pred             CCCCcHHHHHhcCC-CcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDD-EAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++|+|.+++.... ....+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++....
T Consensus       114 ~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dl~p~NIl~~~~~~~kl~Dfg~~~~~~  187 (310)
T 2wqm_A          114 ADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHSR---RVMHRDIKPANVFITATGVVKLGDLGLGRFFS  187 (310)
T ss_dssp             CCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCC-------
T ss_pred             CCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHhhC---CeeCCCCcHHHEEEcCCCCEEEEeccceeeec
Confidence            35789998887421 112588999999999999999999998   99999999999999999999999999886554

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=99.26  E-value=7.7e-12  Score=70.46  Aligned_cols=67  Identities=22%  Similarity=0.422  Sum_probs=49.4

Q ss_pred             CCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            3 RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         3 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +++|.+++...    .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||+++...
T Consensus       117 ~~~L~~~~~~~----~l~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~kL~DFG~a~~~~  183 (367)
T 2fst_X          117 GADLNNIVKCQ----KLTDDHVQFLIYQILRGLKYIHSA---DIIHRDLKPSNLAVNEDCELKILDFGLARHTA  183 (367)
T ss_dssp             CEECC-----C----CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECC--------
T ss_pred             CCCHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHhhEEECCCCCEEEeecccccccc
Confidence            45666666542    588999999999999999999998   99999999999999999999999999987643

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=99.26  E-value=2.1e-11  Score=67.06  Aligned_cols=69  Identities=23%  Similarity=0.286  Sum_probs=58.8

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      .+++|.+++....   .+++.....++.|++.++.|+|..   +++|+|+++.|++++. ..+++.|||++..+..
T Consensus       110 ~~~~L~~~l~~~~---~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~~-~~~kL~Dfg~~~~~~~  178 (313)
T 3cek_A          110 GNIDLNSWLKKKK---SIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIVD-GMLKLIDFGIANQMQP  178 (313)
T ss_dssp             CSEEHHHHHHHCS---SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEET-TEEEECCCSSSCC---
T ss_pred             CCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCcccEEEEC-CeEEEeeccccccccC
Confidence            4678999998754   588889999999999999999998   9999999999999964 7899999999876543

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=99.26  E-value=5.3e-11  Score=64.74  Aligned_cols=71  Identities=27%  Similarity=0.517  Sum_probs=60.4

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCC---CcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLN---LEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~i~~~g~~~~~~~   77 (84)
                      +++++|.+++....   .+++.....++.|++.++.++|..   +++|+|+++.|++++..   ..+++.|||++.....
T Consensus       103 ~~~~~L~~~l~~~~---~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~~~~~  176 (287)
T 2wei_A          103 YTGGELFDEIIKRK---RFSEHDAARIIKQVFSGITYMHKH---NIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQ  176 (287)
T ss_dssp             CCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSSTTCCEEECSTTGGGTBCC
T ss_pred             cCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCChhhEEEecCCCcccEEEeccCcceeecC
Confidence            35788988887654   588999999999999999999998   99999999999999653   4699999998876543

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.26  E-value=1.1e-11  Score=72.88  Aligned_cols=61  Identities=21%  Similarity=0.472  Sum_probs=53.1

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      |++|+|.+++..           ...++.|++.++.|+|..   +++|+|+++.|++++.  .+++.|||+++....
T Consensus       421 ~~ggsL~~~l~~-----------~~~i~~qi~~aL~~LH~~---gIiHrDiKp~NILl~~--~~kL~DFGla~~~~~  481 (540)
T 3en9_A          421 INGKLAKDVIED-----------NLDIAYKIGEIVGKLHKN---DVIHNDLTTSNFIFDK--DLYIIDFGLGKISNL  481 (540)
T ss_dssp             CCSEEHHHHSTT-----------CTHHHHHHHHHHHHHHHT---TEECTTCCTTSEEESS--SEEECCCTTCEECCC
T ss_pred             CCCCCHHHHHHH-----------HHHHHHHHHHHHHHHHHC---cCccCCCCHHHEEECC--eEEEEECccCEECCC
Confidence            457888888764           346789999999999998   9999999999999988  999999999987654

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=99.26  E-value=1.5e-11  Score=68.33  Aligned_cols=55  Identities=31%  Similarity=0.508  Sum_probs=48.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCC--cEEEcccccceecc
Q 040123           19 LNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNL--EASVADFGTARLLH   76 (84)
Q Consensus        19 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~i~~~g~~~~~~   76 (84)
                      +++.....++.|++.++.|+|..   +++|+|+++.|++++.+.  .+++.|||++..+.
T Consensus       165 ~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~  221 (345)
T 3hko_A          165 QREKLISNIMRQIFSALHYLHNQ---GICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFY  221 (345)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESCSSSCCEEECCCTTCEEGG
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHC---CccccCCChhhEEEecCCCceEEEeecccccccc
Confidence            35667778899999999999998   999999999999997655  79999999987653

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=99.25  E-value=5.6e-12  Score=68.21  Aligned_cols=73  Identities=30%  Similarity=0.454  Sum_probs=60.3

Q ss_pred             CCCCcHHHHHhcCCC-cccCCHHHHHHHHHHHHHHHHHHhcCCCCC-----eEecCCCCCcEEeCCCCcEEEccccccee
Q 040123            1 MERGSLFCVLRDDDE-AIELNWTKRVSIVKSVAHALSYLHHDCTLS-----VVHRDISSNNILLDLNLEASVADFGTARL   74 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~~~i~~~g~~~~   74 (84)
                      +++|+|.+++..... ...+++.....++.|++.++.|+|..   +     ++|+|+++.|++++.+..+++.|||.+..
T Consensus        89 ~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~~~~~~ivH~dl~p~NIl~~~~~~~kl~dfg~~~~  165 (279)
T 2w5a_A           89 CEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRR---SDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARI  165 (279)
T ss_dssp             CTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHH---C------CCCCCSGGGEEECSSSCEEECCCCHHHH
T ss_pred             CCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHhcc---cCCCCeeEEeccchhhEEEcCCCCEEEecCchhee
Confidence            357799998875321 12488999999999999999999988   7     99999999999999999999999998765


Q ss_pred             cc
Q 040123           75 LH   76 (84)
Q Consensus        75 ~~   76 (84)
                      ..
T Consensus       166 ~~  167 (279)
T 2w5a_A          166 LN  167 (279)
T ss_dssp             C-
T ss_pred             ec
Confidence            43

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=99.25  E-value=8.9e-11  Score=66.28  Aligned_cols=72  Identities=22%  Similarity=0.338  Sum_probs=57.9

Q ss_pred             CcHHHHHhcCC-CcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeC-CCCcEEEcccccceeccCC
Q 040123            4 GSLFCVLRDDD-EAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLD-LNLEASVADFGTARLLHVD   78 (84)
Q Consensus         4 g~L~~~l~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~i~~~g~~~~~~~~   78 (84)
                      |+|.+.+.... ....+++..+..++.|++.++.|+|..   +++|+|+++.|++++ .+..+++.|||++..+...
T Consensus       122 ~~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---gi~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~  195 (383)
T 3eb0_A          122 DTLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFIHSL---GICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPS  195 (383)
T ss_dssp             EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCCGGGEEEETTTTEEEECCCTTCEECCTT
T ss_pred             ccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---cCccCccCHHHEEEcCCCCcEEEEECCCCcccCCC
Confidence            45555554311 112588999999999999999999988   999999999999997 5788999999999876443

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=99.25  E-value=1.3e-11  Score=68.43  Aligned_cols=68  Identities=21%  Similarity=0.365  Sum_probs=57.8

Q ss_pred             CCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeC-----CCCcEEEcccccceecc
Q 040123            3 RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLD-----LNLEASVADFGTARLLH   76 (84)
Q Consensus         3 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~~i~~~g~~~~~~   76 (84)
                      .|+|.+++....   .+++.....++.|++.++.|+|..   +++|+|+++.|+++.     ....+++.|||++....
T Consensus       116 ~~~L~~~~~~~~---~~~~~~~~~i~~ql~~~l~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~a~~~~  188 (329)
T 3gbz_A          116 ENDLKKYMDKNP---DVSMRVIKSFLYQLINGVNFCHSR---RCLHRDLKPQNLLLSVSDASETPVLKIGDFGLARAFG  188 (329)
T ss_dssp             SEEHHHHHHHCT---TCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEC-----CCEEEECCTTHHHHHC
T ss_pred             CCCHHHHHhhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CEECCCCCHHHEEEecCCCCccceEEECcCCCccccC
Confidence            368888888765   588999999999999999999998   999999999999994     34459999999886543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.23  E-value=2.4e-11  Score=72.97  Aligned_cols=68  Identities=24%  Similarity=0.331  Sum_probs=56.0

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      |++++|.+++..     .+++.....++.|++.++.|+|..   +++|+|+++.||+++.+ .+++.|||++.....
T Consensus       166 ~~g~~L~~~~~~-----~l~~~~~~~~~~qi~~aL~~lH~~---giiHrDlkp~NIll~~~-~~kl~DFG~a~~~~~  233 (681)
T 2pzi_A          166 VGGQSLKRSKGQ-----KLPVAEAIAYLLEILPALSYLHSI---GLVYNDLKPENIMLTEE-QLKLIDLGAVSRINS  233 (681)
T ss_dssp             CCCEECC----C-----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECSS-CEEECCCTTCEETTC
T ss_pred             CCCCcHHHHHhC-----CCCHHHHHHHHHHHHHHHHHHHHC---CCeecccChHHeEEeCC-cEEEEecccchhccc
Confidence            356777766543     488999999999999999999998   99999999999999875 889999999887643

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=99.23  E-value=1.7e-10  Score=65.11  Aligned_cols=73  Identities=25%  Similarity=0.372  Sum_probs=59.6

Q ss_pred             CCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeC--CCCcEEEcccccceeccC
Q 040123            3 RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLD--LNLEASVADFGTARLLHV   77 (84)
Q Consensus         3 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~i~~~g~~~~~~~   77 (84)
                      +|+|.+++...... .+++.....++.|++.++.|+|.. ..+++|+|+++.|+++.  .+..+++.|||++.....
T Consensus       139 ~~~L~~~l~~~~~~-~~~~~~~~~i~~qi~~al~~lH~~-~~~ivHrDlkp~NIll~~~~~~~~kL~DFG~a~~~~~  213 (382)
T 2vx3_A          139 SYNLYDLLRNTNFR-GVSLNLTRKFAQQMCTALLFLATP-ELSIIHCDLKPENILLCNPKRSAIKIVDFGSSCQLGQ  213 (382)
T ss_dssp             CCBHHHHHHHTTTS-CCCHHHHHHHHHHHHHHHHHHTST-TTCEECCCCSGGGEEESSTTSCCEEECCCTTCEETTC
T ss_pred             CCCHHHHHhhcCcC-CCCHHHHHHHHHHHHHHHHHhccC-CCCEEcCCCCcccEEEecCCCCcEEEEeccCceeccc
Confidence            46888888865422 488899999999999999999942 23899999999999995  467799999999877643

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=99.23  E-value=1.3e-10  Score=63.61  Aligned_cols=68  Identities=25%  Similarity=0.391  Sum_probs=58.2

Q ss_pred             cHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            5 SLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         5 ~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      .+.+++...... .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++....
T Consensus        93 ~l~~~~~~~~~~-~~~~~~~~~~~~qi~~al~~LH~~---~i~H~dlkp~NIl~~~~~~~kl~dfg~~~~~~  160 (305)
T 2wtk_C           93 GMQEMLDSVPEK-RFPVCQAHGYFCQLIDGLEYLHSQ---GIVHKDIKPGNLLLTTGGTLKISALGVAEALH  160 (305)
T ss_dssp             EHHHHHHHSTTC-SCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTTCEECC
T ss_pred             CHHHHHHhCccc-ccCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCcccEEEcCCCcEEeeccccccccC
Confidence            366666654322 588999999999999999999998   99999999999999999999999999987654

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=99.22  E-value=3.6e-11  Score=66.47  Aligned_cols=72  Identities=31%  Similarity=0.494  Sum_probs=60.2

Q ss_pred             CCCCcHHHHHhcCCC----cccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCC---CCcEEEcccccce
Q 040123            1 MERGSLFCVLRDDDE----AIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL---NLEASVADFGTAR   73 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~i~~~g~~~   73 (84)
                      +++|+|.+++.....    ...+++.....++.|++.++.|+|..   +++|+|+++.|++++.   ...+++.|||++.
T Consensus       115 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~---~i~H~dlkp~NIli~~~~~~~~~kl~Dfg~~~  191 (327)
T 2yfx_A          115 MAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCPGPGRVAKIGDFGMAR  191 (327)
T ss_dssp             CTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSSTTCCEEECCCHHHH
T ss_pred             CCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHhhC---CeecCcCCHhHEEEecCCCcceEEECcccccc
Confidence            357899999986542    12478889999999999999999998   9999999999999983   4569999999876


Q ss_pred             ec
Q 040123           74 LL   75 (84)
Q Consensus        74 ~~   75 (84)
                      ..
T Consensus       192 ~~  193 (327)
T 2yfx_A          192 DI  193 (327)
T ss_dssp             HH
T ss_pred             cc
Confidence            43

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=99.22  E-value=1.4e-10  Score=66.36  Aligned_cols=57  Identities=30%  Similarity=0.433  Sum_probs=51.2

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCC-CcEEEcccccceeccC
Q 040123           18 ELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLN-LEASVADFGTARLLHV   77 (84)
Q Consensus        18 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~i~~~g~~~~~~~   77 (84)
                      .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+ ..+|+.|||+++.+..
T Consensus       152 ~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NILl~~~~~~~kl~DFG~a~~~~~  209 (420)
T 1j1b_A          152 TLPVIYVKLYMYQLFRSLAYIHSF---GICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVR  209 (420)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCSGGGEEEETTTTEEEECCCTTCEECCT
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChhhEEEeCCCCeEEeccchhhhhccc
Confidence            588899999999999999999988   99999999999999854 5689999999987643

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=99.22  E-value=4.2e-11  Score=67.39  Aligned_cols=65  Identities=25%  Similarity=0.432  Sum_probs=54.0

Q ss_pred             CcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            4 GSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         4 g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      |+|.+++..     .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++....
T Consensus       114 ~~l~~~~~~-----~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~  178 (371)
T 2xrw_A          114 ANLCQVIQM-----ELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLARTAG  178 (371)
T ss_dssp             EEHHHHHHS-----CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECCCCC-----
T ss_pred             CCHHHHHhh-----ccCHHHHHHHHHHHHHHHHHHHHC---CeecccCCHHHEEEcCCCCEEEEEeecccccc
Confidence            567777653     478888999999999999999998   99999999999999999999999999987654

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=99.20  E-value=1.3e-10  Score=64.89  Aligned_cols=58  Identities=24%  Similarity=0.333  Sum_probs=52.0

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHh--cCCCCCeEecCCCCCcEEeCC-CCcEEEcccccceeccCC
Q 040123           18 ELNWTKRVSIVKSVAHALSYLH--HDCTLSVVHRDISSNNILLDL-NLEASVADFGTARLLHVD   78 (84)
Q Consensus        18 ~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~-~~~~~i~~~g~~~~~~~~   78 (84)
                      .+++.....++.|++.++.|+|  ..   +++|+|+++.|++++. +..+++.|||++..+...
T Consensus       125 ~~~~~~~~~~~~qi~~al~~lH~~~~---~ivH~Dlkp~NIll~~~~~~~kl~Dfg~a~~~~~~  185 (360)
T 3e3p_A          125 APPPILIKVFLFQLIRSIGCLHLPSV---NVCHRDIKPHNVLVNEADGTLKLCDFGSAKKLSPS  185 (360)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHTSTTT---CCBCSCCCGGGEEEETTTTEEEECCCTTCBCCCTT
T ss_pred             CCCHHHHHHHHHHHHHHHHHHhCCCC---CeecCcCCHHHEEEeCCCCcEEEeeCCCceecCCC
Confidence            5788889999999999999999  77   9999999999999986 789999999999876543

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=99.20  E-value=6.7e-11  Score=64.91  Aligned_cols=66  Identities=27%  Similarity=0.480  Sum_probs=57.0

Q ss_pred             CcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeC-CCCcEEEcccccceecc
Q 040123            4 GSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLD-LNLEASVADFGTARLLH   76 (84)
Q Consensus         4 g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~i~~~g~~~~~~   76 (84)
                      |+|.+++.+.    .+++.....++.|++.++.|+|..   +++|+|+++.|++++ .+..+++.|||++....
T Consensus       106 ~~L~~~~~~~----~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~kl~Dfg~~~~~~  172 (320)
T 2i6l_A          106 TDLANVLEQG----PLLEEHARLFMYQLLRGLKYIHSA---NVLHRDLKPANLFINTEDLVLKIGDFGLARIMD  172 (320)
T ss_dssp             EEHHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEEETTTTEEEECCCTTCBCC-
T ss_pred             CCHHHHhhcC----CccHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEEcCCCCeEEEccCccccccC
Confidence            6788888642    488899999999999999999998   999999999999996 56689999999987653

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...

Probab=99.20  E-value=7.4e-11  Score=64.36  Aligned_cols=68  Identities=24%  Similarity=0.359  Sum_probs=59.2

Q ss_pred             CcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            4 GSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         4 g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      |+|.+++...... .++......++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||.+...
T Consensus        86 ~~L~~~~~~~~~~-~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~  153 (299)
T 2r3i_A           86 QDLKKFMDASALT-GIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLARAF  153 (299)
T ss_dssp             EEHHHHHHHTTTT-CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECSTTHHHHH
T ss_pred             CCHHHHHHhhhcc-CCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCCHHHeEEcCCCCEEECcchhhhhc
Confidence            6788888765322 478889999999999999999998   9999999999999999999999999987654

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=99.18  E-value=8.9e-11  Score=66.10  Aligned_cols=65  Identities=29%  Similarity=0.436  Sum_probs=54.2

Q ss_pred             CcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            4 GSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         4 g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      |+|.+++..     .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++....
T Consensus       131 ~~l~~~~~~-----~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~  195 (371)
T 4exu_A          131 TDLQKIMGM-----EFSEEKIQYLVYQMLKGLKYIHSA---GVVHRDLKPGNLAVNEDCELKILDFGLARHAD  195 (371)
T ss_dssp             EEHHHHTTS-----CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECSTTCC----
T ss_pred             ccHHHHhhc-----CCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCcCHHHeEECCCCCEEEEecCcccccc
Confidence            456555532     488899999999999999999998   99999999999999999999999999987544

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=99.18  E-value=3.2e-11  Score=68.52  Aligned_cols=71  Identities=27%  Similarity=0.463  Sum_probs=54.8

Q ss_pred             CCcHHHHHhcCC------CcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEe----CCCCcEEEcccccc
Q 040123            3 RGSLFCVLRDDD------EAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILL----DLNLEASVADFGTA   72 (84)
Q Consensus         3 ~g~L~~~l~~~~------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~i~~~g~~   72 (84)
                      +|+|.+++....      ....+++..+..++.|++.|+.|+|..   +++|+|+++.|+++    .....+++.|||++
T Consensus       103 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a  179 (405)
T 3rgf_A          103 EHDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHAN---WVLHRDLKPANILVMGEGPERGRVKIADMGFA  179 (405)
T ss_dssp             SEEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECCSSTTTTCEEECCTTCC
T ss_pred             CCCHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHhC---CEeCCCcCHHHeEEecCCCCCCcEEEEECCCc
Confidence            356666665321      111488889999999999999999999   99999999999999    56678999999998


Q ss_pred             eecc
Q 040123           73 RLLH   76 (84)
Q Consensus        73 ~~~~   76 (84)
                      ..+.
T Consensus       180 ~~~~  183 (405)
T 3rgf_A          180 RLFN  183 (405)
T ss_dssp             C---
T ss_pred             eecC
Confidence            7654

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=99.17  E-value=5e-11  Score=68.50  Aligned_cols=69  Identities=25%  Similarity=0.437  Sum_probs=54.5

Q ss_pred             CCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCC-----CCcEEEcccccceecc
Q 040123            3 RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL-----NLEASVADFGTARLLH   76 (84)
Q Consensus         3 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~i~~~g~~~~~~   76 (84)
                      +|+|.+++.....  ...+.....++.|++.|+.|+|..   +++|+|+++.|+++..     ...+++.|||++..+.
T Consensus       101 ~g~L~~~l~~~~~--~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~~~  174 (432)
T 3p23_A          101 AATLQEYVEQKDF--AHLGLEPITLLQQTTSGLAHLHSL---NIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLA  174 (432)
T ss_dssp             SEEHHHHHHSSSC--CCCSSCHHHHHHHHHHHHHHHHHT---TCCCCCCSTTSEEECCCBTTTBCCEEECCTTEEECC-
T ss_pred             CCCHHHHHHhcCC--CccchhHHHHHHHHHHHHHHHHHC---cCEeCCCCHHHEEEecCCCCCceeEEEecccceeecc
Confidence            4688888876543  244445568899999999999998   9999999999999942     3457899999987654

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=99.16  E-value=3.4e-10  Score=63.72  Aligned_cols=57  Identities=30%  Similarity=0.479  Sum_probs=45.9

Q ss_pred             CCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCC
Q 040123            3 RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNL   62 (84)
Q Consensus         3 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   62 (84)
                      +|++.+++...... .+++.....++.|++.++.|+|..+  +++|+|+++.|++++.+.
T Consensus       128 ~~~l~~~~~~~~~~-~~~~~~~~~i~~qi~~aL~~lH~~~--givHrDikp~NIll~~~~  184 (397)
T 1wak_A          128 GHHLLKWIIKSNYQ-GLPLPCVKKIIQQVLQGLDYLHTKC--RIIHTDIKPENILLSVNE  184 (397)
T ss_dssp             CCBHHHHHHHTTTS-CCCHHHHHHHHHHHHHHHHHHHHTT--CEECCCCSGGGEEECCCH
T ss_pred             CccHHHHHHhcccC-CCCHHHHHHHHHHHHHHHHHHHHhC--CEecCCCCHHHeeEeccc
Confidence            56777776654321 5889999999999999999999742  799999999999998653

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=99.16  E-value=2e-10  Score=64.29  Aligned_cols=72  Identities=22%  Similarity=0.463  Sum_probs=58.9

Q ss_pred             CCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeC------CCCcEEEcccccceecc
Q 040123            3 RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLD------LNLEASVADFGTARLLH   76 (84)
Q Consensus         3 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~~~~i~~~g~~~~~~   76 (84)
                      +++|.+++...... .+++.....++.|++.++.|+|..+  +++|+|+++.|++++      ....+++.|||++....
T Consensus       113 ~~~L~~~~~~~~~~-~~~~~~~~~i~~qi~~aL~~lH~~~--~ivH~Dikp~NIll~~~~~~~~~~~~kl~Dfg~a~~~~  189 (373)
T 1q8y_A          113 GENLLALIKKYEHR-GIPLIYVKQISKQLLLGLDYMHRRC--GIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYD  189 (373)
T ss_dssp             CEEHHHHHHHTTTS-CCCHHHHHHHHHHHHHHHHHHHHTT--CEECSCCSGGGEEEEEEETTTTEEEEEECCCTTCEETT
T ss_pred             CCCHHHHHHHhhcc-CCcHHHHHHHHHHHHHHHHHHHhcC--CEEecCCChHHeEEeccCCCcCcceEEEcccccccccC
Confidence            67888888864432 4888999999999999999999731  799999999999994      33478999999987664


Q ss_pred             C
Q 040123           77 V   77 (84)
Q Consensus        77 ~   77 (84)
                      .
T Consensus       190 ~  190 (373)
T 1q8y_A          190 E  190 (373)
T ss_dssp             B
T ss_pred             C
Confidence            3

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=99.15  E-value=8.6e-11  Score=65.62  Aligned_cols=56  Identities=30%  Similarity=0.492  Sum_probs=50.8

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123           18 ELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus        18 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      .+++.....++.|++.++.|+|..   +++|+|+++.|++++.+..+++.|||++....
T Consensus       122 ~~~~~~~~~i~~qi~~al~~LH~~---~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~  177 (353)
T 3coi_A          122 KFSEEKIQYLVYQMLKGLKYIHSA---GVVHRDLKPGNLAVNEDCELKILDFGLARHAD  177 (353)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECTTCCEEECSTTCTTC--
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEeECCCCcEEEeecccccCCC
Confidence            478899999999999999999998   99999999999999999999999999886543

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=99.12  E-value=1.9e-10  Score=62.42  Aligned_cols=71  Identities=28%  Similarity=0.337  Sum_probs=52.5

Q ss_pred             CcHHHHHhcCC-CcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            4 GSLFCVLRDDD-EAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         4 g~L~~~l~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      |+|.+++.... ....+++.....++.|++.++.|+|..  .+++|+|+++.|++++.+..+++.|||++....
T Consensus        90 ~~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~--~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~  161 (290)
T 3fme_A           90 TSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSK--LSVIHRDVKPSNVLINALGQVKMCDFGISGYLV  161 (290)
T ss_dssp             EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHH--SCCCCCCCSGGGCEECTTCCEEBCCC-------
T ss_pred             cchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhc--CCeecCCCCHHHEEECCCCCEEEeecCCccccc
Confidence            56666665311 112588999999999999999999963  179999999999999999999999999987654

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=99.08  E-value=1.4e-10  Score=66.53  Aligned_cols=72  Identities=22%  Similarity=0.386  Sum_probs=53.6

Q ss_pred             CCcHHHHHhcCCCcc-c---CCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCC-------------CcEE
Q 040123            3 RGSLFCVLRDDDEAI-E---LNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLN-------------LEAS   65 (84)
Q Consensus         3 ~g~L~~~l~~~~~~~-~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-------------~~~~   65 (84)
                      +|+|.+++....... .   ..+.....++.|++.|+.|+|..   +++|+|+++.|++++..             ..++
T Consensus        92 ~gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDLkp~NILl~~~~~~~~~~~~~~~~~~~k  168 (434)
T 2rio_A           92 NLNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHSL---KIIHRDLKPQNILVSTSSRFTADQQTGAENLRIL  168 (434)
T ss_dssp             SEEHHHHHHTC------------CCHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEECCHHHHSCCTTCCCSCEEE
T ss_pred             CCCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEecCcccccccccCCCceEEE
Confidence            468999887644210 0   12223467899999999999998   99999999999999643             4789


Q ss_pred             EcccccceeccC
Q 040123           66 VADFGTARLLHV   77 (84)
Q Consensus        66 i~~~g~~~~~~~   77 (84)
                      ++|||++..+..
T Consensus       169 L~DFG~a~~~~~  180 (434)
T 2rio_A          169 ISDFGLCKKLDS  180 (434)
T ss_dssp             ECCCTTCEECCC
T ss_pred             EcccccceecCC
Confidence            999999987654

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=99.04  E-value=7.5e-10  Score=60.55  Aligned_cols=63  Identities=17%  Similarity=0.111  Sum_probs=52.8

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEccccc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGT   71 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~   71 (84)
                      +++++|.++++..     ........++.|++.++.|+|..   +++|+|+++.|++++.+..+++.+++.
T Consensus       113 ~~g~~L~~~l~~~-----~~~~~~~~i~~ql~~aL~~lH~~---givH~Dikp~NIll~~~g~~kl~~~~~  175 (286)
T 3uqc_A          113 IRGGSLQEVADTS-----PSPVGAIRAMQSLAAAADAAHRA---GVALSIDHPSRVRVSIDGDVVLAYPAT  175 (286)
T ss_dssp             CCEEEHHHHHTTC-----CCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEEETTSCEEECSCCC
T ss_pred             cCCCCHHHHHhcC-----CChHHHHHHHHHHHHHHHHHHHC---CCccCCCCcccEEEcCCCCEEEEeccc
Confidence            4578999998642     34556788899999999999999   999999999999999988898886554

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.03  E-value=8.7e-10  Score=60.35  Aligned_cols=48  Identities=19%  Similarity=0.319  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123           25 VSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus        25 ~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      ..++.|++.++.++|..   +++|+|+++.|++++ +..++++|||++....
T Consensus       196 ~~i~~qi~~~l~~lH~~---giiHrDlkp~NILl~-~~~vkl~DFG~a~~~~  243 (282)
T 1zar_A          196 DEVLDMILEEVAKFYHR---GIVHGDLSQYNVLVS-EEGIWIIDFPQSVEVG  243 (282)
T ss_dssp             HHHHHHHHHHHHHHHHT---TEECSCCSTTSEEEE-TTEEEECCCTTCEETT
T ss_pred             HHHHHHHHHHHHHHHHC---CCEeCCCCHHHEEEE-CCcEEEEECCCCeECC
Confidence            35889999999999988   999999999999999 8899999999998654

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=99.02  E-value=7.5e-10  Score=60.79  Aligned_cols=56  Identities=30%  Similarity=0.442  Sum_probs=48.8

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHhc-CCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123           18 ELNWTKRVSIVKSVAHALSYLHH-DCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus        18 ~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      .+++.....++.|++.++.|+|. .   +++|+|+++.|++++.+..+++.|||++..+.
T Consensus       120 ~~~~~~~~~~~~~i~~~l~~lH~~~---~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~  176 (318)
T 2dyl_A          120 PIPERILGKMTVAIVKALYYLKEKH---GVIHRDVKPSNILLDERGQIKLCDFGISGRLV  176 (318)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHH---CCCCCCCCGGGEEECTTSCEEECCCTTC----
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhhC---CEEeCCCCHHHEEECCCCCEEEEECCCchhcc
Confidence            58899999999999999999997 5   79999999999999999999999999886553

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=99.00  E-value=2.5e-09  Score=57.76  Aligned_cols=50  Identities=26%  Similarity=0.296  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHHHHHHh-cCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123           22 TKRVSIVKSVAHALSYLH-HDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus        22 ~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      .....++.|++.++.++| ..   +++|+|+++.|++++.  .++++|||++....
T Consensus       170 ~~~~~i~~qi~~~l~~lH~~~---givHrDlkp~NILl~~--~~~liDFG~a~~~~  220 (258)
T 1zth_A          170 LDVEGIFNDVVENVKRLYQEA---ELVHADLSEYNIMYID--KVYFIDMGQAVTLR  220 (258)
T ss_dssp             SCHHHHHHHHHHHHHHHHHTS---CEECSSCSTTSEEESS--SEEECCCTTCEETT
T ss_pred             HHHHHHHHHHHHHHHHHHHHC---CEEeCCCCHHHEEEcC--cEEEEECcccccCC
Confidence            345678899999999999 88   9999999999999987  89999999997764

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=98.93  E-value=3e-09  Score=58.81  Aligned_cols=71  Identities=27%  Similarity=0.254  Sum_probs=55.5

Q ss_pred             CcHHHHHhcC--CCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            4 GSLFCVLRDD--DEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         4 g~L~~~l~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      |+|.+++...  .....+++.....++.|++.++.|+|..  .+++|+|+++.|++++.+..+++.|||++..+.
T Consensus       105 ~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~--~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~  177 (327)
T 3aln_A          105 TSFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKEN--LKIIHRDIKPSNILLDRSGNIKLCDFGISGQLV  177 (327)
T ss_dssp             EEHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHH--HSCCCSCCCGGGEEEETTTEEEECCCSSSCC--
T ss_pred             CChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHhcc--CCEeECCCCHHHEEEcCCCCEEEccCCCceecc
Confidence            4566655521  0112588899999999999999999963  179999999999999999999999999987654

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=98.07  E-value=5.8e-06  Score=47.53  Aligned_cols=45  Identities=18%  Similarity=0.271  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCC----------cEEEcccccc
Q 040123           25 VSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNL----------EASVADFGTA   72 (84)
Q Consensus        25 ~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------~~~i~~~g~~   72 (84)
                      ..+..|++.++.++|..   +++|+|+++.||+++.+.          .+.++||+=+
T Consensus       208 ~~l~~qll~~l~~lH~~---gIVHrDLKp~NILl~~dgd~~d~~~~~~~~~iID~~Q~  262 (397)
T 4gyi_A          208 ASLYADLIALILRLAKH---GLIHGDFNEFNILIREEKDAEDPSSITLTPIIIXFPQM  262 (397)
T ss_dssp             HHHHHHHHHHHHHHHHT---TEECSCCSTTSEEEEEEECSSCTTSEEEEEEECCCTTC
T ss_pred             HHHHHHHHHHHHHHHHC---CCcCCCCCHHHEEEeCCCCcccccccccceEEEEeCCc
Confidence            45678999999999988   999999999999997654          2678888744

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=96.56  E-value=0.0058  Score=32.46  Aligned_cols=31  Identities=23%  Similarity=0.263  Sum_probs=25.8

Q ss_pred             CeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123           45 SVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus        45 ~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      .++|+|+.+.|++++.+....+.||+.+...
T Consensus       185 ~l~HgDl~~~Nil~~~~~~~~liD~~~a~~g  215 (264)
T 1nd4_A          185 VVTHGDACLPNIMVENGRFSGFIDCGRLGVA  215 (264)
T ss_dssp             EEECSSCCGGGEEEETTEEEEECCCTTCEEE
T ss_pred             EEECCCCCCCcEEEECCcEEEEEcchhcccC
Confidence            4999999999999977656679999987653

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=96.29  E-value=0.0092  Score=31.96  Aligned_cols=30  Identities=20%  Similarity=0.320  Sum_probs=25.0

Q ss_pred             CeEecCCCCCcEEeCCCCcEEEccccccee
Q 040123           45 SVVHRDISSNNILLDLNLEASVADFGTARL   74 (84)
Q Consensus        45 ~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~   74 (84)
                      .++|+|+.+.|++++.+....++||+.+..
T Consensus       184 ~l~HgDl~~~Nil~~~~~~~~lIDwe~a~~  213 (263)
T 3tm0_A          184 VFSHGDLGDSNIFVKDGKVSGFIDLGRSGR  213 (263)
T ss_dssp             EEECSSCCTTSEEEETTEEEEECCCTTCEE
T ss_pred             eEECCCCCcCcEEEECCcEEEEEEchhccc
Confidence            589999999999997765667999987654

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=96.04  E-value=0.035  Score=31.19  Aligned_cols=31  Identities=26%  Similarity=0.375  Sum_probs=25.2

Q ss_pred             CCeEecCCCCCcEEeCCCC--cEEEccccccee
Q 040123           44 LSVVHRDISSNNILLDLNL--EASVADFGTARL   74 (84)
Q Consensus        44 ~~~~~~~l~~~~~~~~~~~--~~~i~~~g~~~~   74 (84)
                      ..++|+|+.+.|++++.+.  ...+.||+.+..
T Consensus       216 ~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~  248 (359)
T 3dxp_A          216 TSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTL  248 (359)
T ss_dssp             CEEECSSCSGGGEEECSSSSCEEEECCCTTCEE
T ss_pred             ceEEeCCCCCCcEEEeCCCCcEEEEECcccccc
Confidence            4789999999999998654  368999987654

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=94.25  E-value=0.32  Score=26.85  Aligned_cols=31  Identities=29%  Similarity=0.379  Sum_probs=26.4

Q ss_pred             CCeEecCCCCCcEEeCCCCcEEEccccccee
Q 040123           44 LSVVHRDISSNNILLDLNLEASVADFGTARL   74 (84)
Q Consensus        44 ~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~   74 (84)
                      ..++|+|+.+.|++++.+..+.+.||+.+..
T Consensus       222 ~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~~  252 (346)
T 2q83_A          222 PNLCHQDYGTGNTLLGENEQIWVIDLDTVSF  252 (346)
T ss_dssp             CCEECSSCSTTSEEECGGGCEEECCCTTCEE
T ss_pred             CceecCCCCcccEEEeCCCcEEEEehhhccc
Confidence            3899999999999997777889999987643

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=92.45  E-value=0.094  Score=28.81  Aligned_cols=32  Identities=38%  Similarity=0.622  Sum_probs=26.4

Q ss_pred             CCeEecCCCCCcEEeCC--CCcEEEcccccceec
Q 040123           44 LSVVHRDISSNNILLDL--NLEASVADFGTARLL   75 (84)
Q Consensus        44 ~~~~~~~l~~~~~~~~~--~~~~~i~~~g~~~~~   75 (84)
                      ..++|.|+.+.|++++.  .....+.||+.+...
T Consensus       191 ~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~~  224 (304)
T 3sg8_A          191 PCLIHNDFSSDHILFDTEKNTICGIIDFGDAAIS  224 (304)
T ss_dssp             CEEECSCCCGGGEEEETTTTEEEEECCCTTCEEE
T ss_pred             ceeEeCCCCcccEEEeCCCCCEEEEEeCCCCccC
Confidence            46899999999999987  456789999877653

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=92.38  E-value=0.12  Score=27.66  Aligned_cols=30  Identities=27%  Similarity=0.402  Sum_probs=25.3

Q ss_pred             CeEecCCCCCcEEeCCCCcEEEccccccee
Q 040123           45 SVVHRDISSNNILLDLNLEASVADFGTARL   74 (84)
Q Consensus        45 ~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~   74 (84)
                      .++|.|+.+.|++++......+.||+.+..
T Consensus       194 ~l~HGDl~~~Nil~~~~~~~~viDwe~a~~  223 (272)
T 4gkh_A          194 VVTHGDFSLDNLIFDEGKLIGCIDVGRVGI  223 (272)
T ss_dssp             EEECSCCCTTSEEEETTEEEEECCCTTCEE
T ss_pred             EEEcCCCCCCeEEEECCeEEEEEECccccc
Confidence            479999999999998776677999987654

>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}

Probab=91.34  E-value=0.2  Score=28.88  Aligned_cols=30  Identities=13%  Similarity=0.278  Sum_probs=25.4

Q ss_pred             CCeEecCCCCCcEEeCCCCcEEEccccccee
Q 040123           44 LSVVHRDISSNNILLDLNLEASVADFGTARL   74 (84)
Q Consensus        44 ~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~   74 (84)
                      ..++|+|+.+.|++++.+. ..+.||+.+..
T Consensus       232 ~~liHGDl~~~Nil~~~~~-~~lID~e~a~~  261 (420)
T 2pyw_A          232 QALIHGDLHTGSVMVTQDS-TQVIDPEFSFY  261 (420)
T ss_dssp             CEEECSCCSGGGEEECSSC-EEECCCTTCEE
T ss_pred             CeEEecCCCCCcEEEeCCC-CEEEeCccccc
Confidence            3899999999999997665 89999987654

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=90.88  E-value=0.26  Score=27.26  Aligned_cols=33  Identities=30%  Similarity=0.534  Sum_probs=25.8

Q ss_pred             CCCeEecCCCCCcEEeCC----CCcEEEcccccceec
Q 040123           43 TLSVVHRDISSNNILLDL----NLEASVADFGTARLL   75 (84)
Q Consensus        43 ~~~~~~~~l~~~~~~~~~----~~~~~i~~~g~~~~~   75 (84)
                      ...++|.|+.+.|++++.    .....+.||+.+..-
T Consensus       189 ~~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~~g  225 (306)
T 3tdw_A          189 TPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAIS  225 (306)
T ss_dssp             CCEEECSCCSGGGEEECTTCSSCCEEEECCCTTCEEE
T ss_pred             CCeeEeCCCCcccEEEecCCCCCceEEEEehhhcCCC
Confidence            347899999999999987    334589999876543

>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}

Probab=89.53  E-value=0.36  Score=26.80  Aligned_cols=31  Identities=35%  Similarity=0.537  Sum_probs=25.7

Q ss_pred             CCeEecCCCCCcEEeCCC----CcEEEccccccee
Q 040123           44 LSVVHRDISSNNILLDLN----LEASVADFGTARL   74 (84)
Q Consensus        44 ~~~~~~~l~~~~~~~~~~----~~~~i~~~g~~~~   74 (84)
                      ..++|+|+.+.|+++..+    ....+.||+.+..
T Consensus       183 ~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~  217 (333)
T 3csv_A          183 MVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKL  217 (333)
T ss_dssp             CEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEE
T ss_pred             CeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCc
Confidence            478999999999999764    5689999987654

>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6

Probab=89.34  E-value=0.24  Score=27.27  Aligned_cols=30  Identities=23%  Similarity=0.285  Sum_probs=24.6

Q ss_pred             CCeEecCCCCCcEEeCCCCcEEEcccccce
Q 040123           44 LSVVHRDISSNNILLDLNLEASVADFGTAR   73 (84)
Q Consensus        44 ~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~   73 (84)
                      ..++|+|+.+.|++++.+....+.||..+.
T Consensus       187 ~~liHgDl~~~Nil~~~~~~~~lIDf~~a~  216 (322)
T 2ppq_A          187 AGVIHADLFQDNVFFLGDELSGLIDFYFAC  216 (322)
T ss_dssp             EEEECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred             cccCCCCCCccCEEEeCCceEEEecchhcc
Confidence            378999999999999876556799997654

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=88.98  E-value=0.25  Score=27.65  Aligned_cols=31  Identities=19%  Similarity=0.183  Sum_probs=25.0

Q ss_pred             CCeEecCCCCCcEEeCCCCcEEEccccccee
Q 040123           44 LSVVHRDISSNNILLDLNLEASVADFGTARL   74 (84)
Q Consensus        44 ~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~   74 (84)
                      ..++|.|+.+.|++++.+....+.||..+..
T Consensus       222 ~~l~HgDl~~~Nil~~~~~~~~vIDwe~a~~  252 (357)
T 3ats_A          222 PVLLWGDARVGNVLYRDFQPVAVLDWEMVAL  252 (357)
T ss_dssp             CEEECSSCSGGGEEEETTEEEEECCGGGCEE
T ss_pred             ceEEeCCCCCCeEEEeCCcEEEEEccccccc
Confidence            3789999999999998544568999887653

>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6

Probab=84.14  E-value=0.94  Score=25.01  Aligned_cols=29  Identities=28%  Similarity=0.365  Sum_probs=23.9

Q ss_pred             CCeEecCCCCCcEEeCCCCcEEEccccccee
Q 040123           44 LSVVHRDISSNNILLDLNLEASVADFGTARL   74 (84)
Q Consensus        44 ~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~   74 (84)
                      ..++|+|+.+.|++++ + .+.+.||..+..
T Consensus       195 ~~l~HgD~~~~Nil~~-~-~~~lIDfe~a~~  223 (328)
T 1zyl_A          195 VLRLHGDCHAGNILWR-D-GPMFVDLDDARN  223 (328)
T ss_dssp             CEECCSSCSGGGEEES-S-SEEECCCTTCCE
T ss_pred             eeeeeCCCCcccEeEc-C-CCEEEECCCCCc
Confidence            3689999999999998 4 788999976543

>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}

Probab=83.73  E-value=1.1  Score=24.49  Aligned_cols=31  Identities=23%  Similarity=0.303  Sum_probs=24.2

Q ss_pred             CCCeEecCCCCCcEEeCCCCcEEEccccccee
Q 040123           43 TLSVVHRDISSNNILLDLNLEASVADFGTARL   74 (84)
Q Consensus        43 ~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~   74 (84)
                      ...++|+|+.+.|++ ..+..+.++||..+..
T Consensus       172 ~~~l~HgDl~~~Nil-~~~~~~~lID~e~a~~  202 (301)
T 3dxq_A          172 PLAACHCDPLCENFL-DTGERMWIVDWEYSGM  202 (301)
T ss_dssp             CCEEECSCCCGGGEE-ECSSCEEECCCTTCEE
T ss_pred             CceeeccCCCcCCEE-ECCCCEEEEecccccC
Confidence            346899999999999 4455679999976654

>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*

Probab=82.99  E-value=0.97  Score=25.42  Aligned_cols=31  Identities=23%  Similarity=0.380  Sum_probs=25.5

Q ss_pred             CCeEecCCCCCcEEeCCCCcEEEccccccee
Q 040123           44 LSVVHRDISSNNILLDLNLEASVADFGTARL   74 (84)
Q Consensus        44 ~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~   74 (84)
                      ..++|.|+.+.|++++.+....+.||..+..
T Consensus       206 ~~~~HgD~~~~N~l~~~~~~~~~iD~e~~~~  236 (339)
T 3i1a_A          206 YVLCHSDIHAGNVLVGNEESIYIIDWDEPML  236 (339)
T ss_dssp             CEEECSCCCGGGEEECGGGCEEECCCSSCEE
T ss_pred             ceeEeCCCCcCCEEEeCCCeEEEEECCCCee
Confidence            3789999999999998766788999876543

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=82.70  E-value=1.5  Score=25.03  Aligned_cols=30  Identities=23%  Similarity=0.295  Sum_probs=24.5

Q ss_pred             CCeEecCCCCCcEEeCCCCcEEEccccccee
Q 040123           44 LSVVHRDISSNNILLDLNLEASVADFGTARL   74 (84)
Q Consensus        44 ~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~   74 (84)
                      ..++|+|+.+.|+++..+ .+.+.||..+..
T Consensus       227 ~~L~HGDl~~~Nil~~~~-~~~lID~e~a~~  256 (397)
T 2olc_A          227 ETLIHGDLHTGSIFASEH-ETKVIDPEFAFY  256 (397)
T ss_dssp             CEEECSCCSGGGEEECSS-CEEECCCTTCEE
T ss_pred             CceeeCCCCcCcEEEeCC-CeEEEeCccccc
Confidence            378999999999999764 478999876654

>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*

Probab=82.33  E-value=1.4  Score=24.85  Aligned_cols=28  Identities=25%  Similarity=0.355  Sum_probs=22.6

Q ss_pred             CeEecCCCCCcEEeCCCCcEEEcccccce
Q 040123           45 SVVHRDISSNNILLDLNLEASVADFGTAR   73 (84)
Q Consensus        45 ~~~~~~l~~~~~~~~~~~~~~i~~~g~~~   73 (84)
                      .++|.|+.+.|++++.+. +.++||..+.
T Consensus       213 ~l~HgDl~~~Nil~~~~~-~~lID~e~a~  240 (369)
T 3c5i_A          213 VFCHNDLQENNIINTNKC-LRLIDFEYSG  240 (369)
T ss_dssp             EEECSCCCGGGEEECC-C-EEECCCTTCE
T ss_pred             EEEeCCCCcccEEecCCc-EEEEEecCCC
Confidence            689999999999987544 7899987654

>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}

Probab=81.28  E-value=1.9  Score=25.62  Aligned_cols=16  Identities=31%  Similarity=0.490  Sum_probs=14.4

Q ss_pred             CCeEecCCCCCcEEeC
Q 040123           44 LSVVHRDISSNNILLD   59 (84)
Q Consensus        44 ~~~~~~~l~~~~~~~~   59 (84)
                      ..++|.|+...|++++
T Consensus       290 ~v~cHnDl~~gNIL~~  305 (458)
T 2qg7_A          290 IVLCHCDLLSSNIINT  305 (458)
T ss_dssp             EEEECSCCCGGGEEEC
T ss_pred             eeEEecCCCCCcEEee
Confidence            3689999999999997

>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8

Probab=80.28  E-value=1.3  Score=25.95  Aligned_cols=18  Identities=33%  Similarity=0.569  Sum_probs=15.0

Q ss_pred             CCeEecCCCCCcEEeCCC
Q 040123           44 LSVVHRDISSNNILLDLN   61 (84)
Q Consensus        44 ~~~~~~~l~~~~~~~~~~   61 (84)
                      ..++|+|+.+.|+++..+
T Consensus       249 ~v~~H~Dl~~gNiL~~~~  266 (429)
T 1nw1_A          249 VTFCHNDLQEGNILLPKA  266 (429)
T ss_dssp             EEEECSCCCGGGEEEEC-
T ss_pred             eEEEeCCCCCCeEEeeCC
Confidence            368999999999999764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	84
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	3e-17
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	2e-15
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	5e-14
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	1e-13
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	2e-13
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	3e-13
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	3e-13
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	5e-13
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	8e-13
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	9e-13
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	1e-12
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	1e-12
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	2e-12
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	5e-12
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	5e-12
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	1e-11
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	1e-11
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	1e-11
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	2e-11
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	3e-11
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	6e-11
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	7e-11
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	1e-10
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	1e-10
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	2e-10
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	2e-10
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	3e-10
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	5e-10
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	6e-10
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	7e-10
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	9e-10
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	2e-09
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	2e-09
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	5e-09
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	6e-09
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	7e-09
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	7e-09
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	9e-09
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	1e-08
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	1e-08
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	2e-08
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	2e-08
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	3e-08
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	3e-08
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	4e-08
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	5e-08
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	6e-08
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	7e-08
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	2e-07
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	2e-07
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	5e-07
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	6e-07
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	1e-06
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	2e-06
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	3e-06
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	6e-06
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	7e-06
d1zara2	191	d.144.1.9 (A:91-281) Rio2 serine protein kinase C-	7e-06
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	6e-05
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	2e-04
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	3e-04
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	6e-04

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.2 bits (174), Expect = 3e-17
 Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 5/84 (5%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
            E  SL+  L   +   +    K + I +  A  + YLH      ++HRD+ SNNI L  
Sbjct: 85  CEGSSLYHHLHIIET--KFEMIKLIDIARQTAQGMDYLHAKS---IIHRDLKSNNIFLHE 139

Query: 61  NLEASVADFGTARLLHVDSSNRTL 84
           +L   + DFG A +    S +   
Sbjct: 140 DLTVKIGDFGLATVKSRWSGSHQF 163

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.2 bits (161), Expect = 2e-15
 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 3/86 (3%)

Query: 1   MERGSLFCVLRDDDEAIE-LNWTKRVSIVKSVAHALSYLH--HDCTLSVVHRDISSNNIL 57
            E G L  V+    +  + L+    + ++  +  AL   H   D   +V+HRD+   N+ 
Sbjct: 87  CEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVF 146

Query: 58  LDLNLEASVADFGTARLLHVDSSNRT 83
           LD      + DFG AR+L+ D+S   
Sbjct: 147 LDGKQNVKLGDFGLARILNHDTSFAK 172

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.8 bits (152), Expect = 5e-14
 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 5/82 (6%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           M+ GSL  VL+       +       +  +V   L+YL       ++HRD+  +NIL++ 
Sbjct: 86  MDGGSLDQVLKKAGR---IPEQILGKVSIAVIKGLTYLREKH--KIMHRDVKPSNILVNS 140

Query: 61  NLEASVADFGTARLLHVDSSNR 82
             E  + DFG +  L    +N 
Sbjct: 141 RGEIKLCDFGVSGQLIDSMANS 162

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.6 bits (149), Expect = 1e-13
 Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 4/83 (4%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           ME GSL   L+     I+L   K + +   +A  ++++        +HRD+ + NIL+  
Sbjct: 89  MENGSLVDFLKTP-SGIKLTINKLLDMAAQIAEGMAFIEERN---YIHRDLRAANILVSD 144

Query: 61  NLEASVADFGTARLLHVDSSNRT 83
            L   +ADFG ARL+  +     
Sbjct: 145 TLSCKIADFGLARLIEDNEYTAR 167

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.2 bits (148), Expect = 2e-13
 Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 5/83 (6%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
              G++  V+ + +    L  ++   + K    AL+YLH      ++HRD+ + NIL  L
Sbjct: 91  CAGGAVDAVMLELERP--LTESQIQVVCKQTLDALNYLHD---NKIIHRDLKAGNILFTL 145

Query: 61  NLEASVADFGTARLLHVDSSNRT 83
           + +  +ADFG +         R 
Sbjct: 146 DGDIKLADFGVSAKNTRTIQRRD 168

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.4 bits (146), Expect = 3e-13
 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 6/75 (8%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
              G+++  L+   +    +  +  + +  +A+ALSY H      V+HRDI   N+LL  
Sbjct: 88  APLGTVYRELQKLSK---FDEQRTATYITELANALSYCHS---KRVIHRDIKPENLLLGS 141

Query: 61  NLEASVADFGTARLL 75
             E  +ADFG +   
Sbjct: 142 AGELKIADFGWSVHA 156

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.9 bits (147), Expect = 3e-13
 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 3/74 (4%)

Query: 10  LRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADF 69
           L ++++   L +   +     VA  + +L      S VHRD+++ N+L+       + DF
Sbjct: 152 LEEEEDLNVLTFEDLLCFAYQVAKGMEFLEF---KSCVHRDLAARNVLVTHGKVVKICDF 208

Query: 70  GTARLLHVDSSNRT 83
           G AR +  DS+   
Sbjct: 209 GLARDIMSDSNYVV 222

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.1 bits (145), Expect = 5e-13
 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 5/83 (6%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
              G L   L    E  E+  +    ++  V+  + YL      + VHRD+++ N+LL  
Sbjct: 90  AGGGPLHKFLVGKRE--EIPVSNVAELLHQVSMGMKYLEE---KNFVHRDLAARNVLLVN 144

Query: 61  NLEASVADFGTARLLHVDSSNRT 83
              A ++DFG ++ L  D S  T
Sbjct: 145 RHYAKISDFGLSKALGADDSYYT 167

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.5 bits (143), Expect = 8e-13
 Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 9/89 (10%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDC-----TLSVVHRDISSNN 55
            E GSLF  L        +     + +  S A  L++LH +        ++ HRD+ S N
Sbjct: 83  HEHGSLFDYLNRYT----VTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKN 138

Query: 56  ILLDLNLEASVADFGTARLLHVDSSNRTL 84
           IL+  N    +AD G A      +    +
Sbjct: 139 ILVKKNGTCCIADLGLAVRHDSATDTIDI 167

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.0 bits (142), Expect = 9e-13
 Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 4/83 (4%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           M +GSL   L+ +         + V +   +A  ++Y+        VHRD+ + NIL+  
Sbjct: 93  MSKGSLLDFLKGETGKYL-RLPQLVDMAAQIASGMAYVERMN---YVHRDLRAANILVGE 148

Query: 61  NLEASVADFGTARLLHVDSSNRT 83
           NL   VADFG ARL+  +     
Sbjct: 149 NLVCKVADFGLARLIEDNEYTAR 171

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.0 bits (142), Expect = 1e-12
 Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 5/84 (5%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           ME GSL   LR +D        + V +++ +A  + YL        VHRD+++ NIL++ 
Sbjct: 109 MENGSLDSFLRQNDGQF--TVIQLVGMLRGIAAGMKYLADMN---YVHRDLAARNILVNS 163

Query: 61  NLEASVADFGTARLLHVDSSNRTL 84
           NL   V+DFG +R L  D+S+ T 
Sbjct: 164 NLVCKVSDFGLSRFLEDDTSDPTY 187

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 58.7 bits (141), Expect = 1e-12
 Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 3/65 (4%)

Query: 19  LNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVD 78
           L+  +++ I + VA  ++YL        VHRD+++ N L+  N+   +ADFG +R ++  
Sbjct: 137 LSCAEQLCIARQVAAGMAYLSERK---FVHRDLATRNCLVGENMVVKIADFGLSRNIYSA 193

Query: 79  SSNRT 83
              + 
Sbjct: 194 DYYKA 198

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 58.1 bits (140), Expect = 2e-12
 Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 6/80 (7%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
               +   +         L   +  ++       L+YLH     +++HRD+ + NILL  
Sbjct: 97  CLGSASDLLEVHKKP---LQEVEIAAVTHGALQGLAYLHS---HNMIHRDVKAGNILLSE 150

Query: 61  NLEASVADFGTARLLHVDSS 80
                + DFG+A ++   +S
Sbjct: 151 PGLVKLGDFGSASIMAPANS 170

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.9 bits (137), Expect = 5e-12
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 4/82 (4%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           M +GSL   LR    ++ L     +     V  A+ YL  +     VHRD+++ N+L+  
Sbjct: 83  MAKGSLVDYLRSRGRSV-LGGDCLLKFSLDVCEAMEYLEGNN---FVHRDLAARNVLVSE 138

Query: 61  NLEASVADFGTARLLHVDSSNR 82
           +  A V+DFG  +         
Sbjct: 139 DNVAKVSDFGLTKEASSTQDTG 160

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.9 bits (137), Expect = 5e-12
 Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 5/83 (6%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILL-D 59
           M  G+L   L+       +      S  + +   L +LH      ++HRD+  +NI +  
Sbjct: 94  MTSGTLKTYLKRFKV---MKIKVLRSWCRQILKGLQFLHTRTPP-IIHRDLKCDNIFITG 149

Query: 60  LNLEASVADFGTARLLHVDSSNR 82
                 + D G A L     +  
Sbjct: 150 PTGSVKIGDLGLATLKRASFAKA 172

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (134), Expect = 1e-11
 Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 18/98 (18%)

Query: 1   MERGSLFCVLRD---------------DDEAIELNWTKRVSIVKSVAHALSYLHHDCTLS 45
              G L   LR                +D+ + L+    +S    VA  +++L       
Sbjct: 109 CCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKN--- 165

Query: 46  VVHRDISSNNILLDLNLEASVADFGTARLLHVDSSNRT 83
            +HRD+++ NILL       + DFG AR +  DS+   
Sbjct: 166 CIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVV 203

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.8 bits (134), Expect = 1e-11
 Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 7/86 (8%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           +    +F  +     A ELN  + VS V  V  AL +LH     ++ H DI   NI+   
Sbjct: 83  ISGLDIFERINT--SAFELNEREIVSYVHQVCEALQFLHS---HNIGHFDIRPENIIYQT 137

Query: 61  NLEASV--ADFGTARLLHVDSSNRTL 84
              +++   +FG AR L    + R L
Sbjct: 138 RRSSTIKIIEFGQARQLKPGDNFRLL 163

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.9 bits (134), Expect = 1e-11
 Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 4/83 (4%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           M  G+L   LR+ +   E++    + +   ++ A+ YL      + +HRD+++ N L+  
Sbjct: 95  MTYGNLLDYLRECNR-QEVSAVVLLYMATQISSAMEYLEK---KNFIHRDLAARNCLVGE 150

Query: 61  NLEASVADFGTARLLHVDSSNRT 83
           N    VADFG +RL+  D+    
Sbjct: 151 NHLVKVADFGLSRLMTGDTYTAH 173

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.4 bits (133), Expect = 2e-11
 Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 6/84 (7%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
              G LF  +  D   I +           +   + YLH    + + HRDI   N+LLD 
Sbjct: 85  CSGGELFDRIEPD---IGMPEPDAQRFFHQLMAGVVYLHG---IGITHRDIKPENLLLDE 138

Query: 61  NLEASVADFGTARLLHVDSSNRTL 84
                ++DFG A +   ++  R L
Sbjct: 139 RDNLKISDFGLATVFRYNNRERLL 162

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 55.1 bits (132), Expect = 3e-11
 Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 6/83 (7%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           M++G LF  L    E + L+  +   I++++   +  LH    L++VHRD+   NILLD 
Sbjct: 92  MKKGELFDYLT---EKVTLSEKETRKIMRALLEVICALHK---LNIVHRDLKPENILLDD 145

Query: 61  NLEASVADFGTARLLHVDSSNRT 83
           ++   + DFG +  L      R 
Sbjct: 146 DMNIKLTDFGFSCQLDPGEKLRE 168

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (129), Expect = 6e-11
 Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 6/83 (7%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
            E G L   L+ +     +     + +V  V+  + YL        VHRD+++ N+LL  
Sbjct: 89  AELGPLNKYLQQNRH---VKDKNIIELVHQVSMGMKYLEESN---FVHRDLAARNVLLVT 142

Query: 61  NLEASVADFGTARLLHVDSSNRT 83
              A ++DFG ++ L  D +   
Sbjct: 143 QHYAKISDFGLSKALRADENYYK 165

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 53.9 bits (129), Expect = 7e-11
 Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 7/81 (8%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           +  G LF  +  +D   +++  + ++ ++     L ++H     S+VH DI   NI+ + 
Sbjct: 108 LSGGELFDRIAAED--YKMSEAEVINYMRQACEGLKHMHE---HSIVHLDIKPENIMCET 162

Query: 61  NLEASV--ADFGTARLLHVDS 79
              +SV   DFG A  L+ D 
Sbjct: 163 KKASSVKIIDFGLATKLNPDE 183

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 53.5 bits (128), Expect = 1e-10
 Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 7/85 (8%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILL-- 58
           M  G LF  + D  E  +++  + V  ++ V   L ++H +     VH D+   NI+   
Sbjct: 105 MSGGELFEKVAD--EHNKMSEDEAVEYMRQVCKGLCHMHENN---YVHLDLKPENIMFTT 159

Query: 59  DLNLEASVADFGTARLLHVDSSNRT 83
             + E  + DFG    L    S + 
Sbjct: 160 KRSNELKLIDFGLTAHLDPKQSVKV 184

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (126), Expect = 1e-10
 Identities = 24/96 (25%), Positives = 37/96 (38%), Gaps = 16/96 (16%)

Query: 1   MERGSLFCVLR-------------DDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVV 47
              G+L   LR              +  A  L+  + +     VA  + YL        +
Sbjct: 93  APHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQ---KQFI 149

Query: 48  HRDISSNNILLDLNLEASVADFGTARLLHVDSSNRT 83
           HRD+++ NIL+  N  A +ADFG +R   V      
Sbjct: 150 HRDLAARNILVGENYVAKIADFGLSRGQEVYVKKTM 185

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (126), Expect = 2e-10
 Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 6/84 (7%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
            + G L   +R        + T        +  AL YLH      ++HRD+   NILL+ 
Sbjct: 90  AKNGELLKYIRKIGS---FDETCTRFYTAEIVSALEYLHGKG---IIHRDLKPENILLNE 143

Query: 61  NLEASVADFGTARLLHVDSSNRTL 84
           ++   + DFGTA++L  +S     
Sbjct: 144 DMHIQITDFGTAKVLSPESKQARA 167

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (125), Expect = 2e-10
 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 5/83 (6%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           M  G L   LR+          + + + K V  A+ YL        +HRD+++ N L++ 
Sbjct: 81  MANGCLLNYLREMRH--RFQTQQLLEMCKDVCEAMEYLESKQ---FLHRDLAARNCLVND 135

Query: 61  NLEASVADFGTARLLHVDSSNRT 83
                V+DFG +R +  D    +
Sbjct: 136 QGVVKVSDFGLSRYVLDDEYTSS 158

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.0 bits (124), Expect = 3e-10
 Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 6/83 (7%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           M  G L   L       E +          +   L ++H+     VV+RD+   NILLD 
Sbjct: 89  MNGGDLHYHLSQHGVFSEADMRF---YAAEIILGLEHMHN---RFVVYRDLKPANILLDE 142

Query: 61  NLEASVADFGTARLLHVDSSNRT 83
           +    ++D G A        + +
Sbjct: 143 HGHVRISDLGLACDFSKKKPHAS 165

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (122), Expect = 5e-10
 Identities = 22/84 (26%), Positives = 32/84 (38%), Gaps = 5/84 (5%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
              GSL   LR       L    R      VA  + YL        +HRD+++ N+LL  
Sbjct: 92  APLGSLLDRLRKHQGHFLLGTLSR--YAVQVAEGMGYLESKR---FIHRDLAARNLLLAT 146

Query: 61  NLEASVADFGTARLLHVDSSNRTL 84
                + DFG  R L  +  +  +
Sbjct: 147 RDLVKIGDFGLMRALPQNDDHYVM 170

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (122), Expect = 6e-10
 Identities = 22/96 (22%), Positives = 35/96 (36%), Gaps = 16/96 (16%)

Query: 1   MERGSLFCVLR-------------DDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVV 47
            + G+L   LR             +D     L     +     VA  + +L        +
Sbjct: 100 CKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLAS---RKCI 156

Query: 48  HRDISSNNILLDLNLEASVADFGTARLLHVDSSNRT 83
           HRD+++ NILL       + DFG AR ++ D     
Sbjct: 157 HRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVR 192

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (122), Expect = 7e-10
 Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 7/83 (8%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           +  GSL  V+ +       +  +  ++ +    AL +LH      V+HRDI S+NILL +
Sbjct: 99  LAGGSLTDVVTETCM----DEGQIAAVCRECLQALEFLHS---NQVIHRDIKSDNILLGM 151

Query: 61  NLEASVADFGTARLLHVDSSNRT 83
           +    + DFG    +  + S R+
Sbjct: 152 DGSVKLTDFGFCAQITPEQSKRS 174

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (121), Expect = 9e-10
 Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 7/86 (8%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           ++ G LF  ++D  +       +   I+KS+  A+ YLH    +++ HRD+   N+L   
Sbjct: 91  LDGGELFSRIQDRGD-QAFTEREASEIMKSIGEAIQYLHS---INIAHRDVKPENLLYTS 146

Query: 61  NLEASV---ADFGTARLLHVDSSNRT 83
               ++    DFG A+     +S  T
Sbjct: 147 KRPNAILKLTDFGFAKETTSHNSLTT 172

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (118), Expect = 2e-09
 Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 5/84 (5%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           M  G L   +R+  + I       ++    +A  ++YL       +VHRD+++ N+L+  
Sbjct: 92  MPFGCLLDYVREHKDNI--GSQYLLNWCVQIAKGMNYLED---RRLVHRDLAARNVLVKT 146

Query: 61  NLEASVADFGTARLLHVDSSNRTL 84
                + DFG A+LL  +      
Sbjct: 147 PQHVKITDFGLAKLLGAEEKEYHA 170

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (118), Expect = 2e-09
 Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 5/83 (6%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           ME G L   LR             + +   V   ++YL   C   V+HRD+++ N L+  
Sbjct: 82  MEHGCLSDYLRTQRGLFA--AETLLGMCLDVCEGMAYLEEAC---VIHRDLAARNCLVGE 136

Query: 61  NLEASVADFGTARLLHVDSSNRT 83
           N    V+DFG  R +  D    +
Sbjct: 137 NQVIKVSDFGMTRFVLDDQYTSS 159

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (115), Expect = 5e-09
 Identities = 20/90 (22%), Positives = 40/90 (44%), Gaps = 10/90 (11%)

Query: 1   MERGSLFCVLR-------DDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISS 53
           M RG L   LR       ++      + +K + +   +A  ++YL+ +     VHRD+++
Sbjct: 105 MTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANK---FVHRDLAA 161

Query: 54  NNILLDLNLEASVADFGTARLLHVDSSNRT 83
            N ++  +    + DFG  R ++     R 
Sbjct: 162 RNCMVAEDFTVKIGDFGMTRDIYETDYYRK 191

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.6 bits (115), Expect = 6e-09
 Identities = 14/46 (30%), Positives = 23/46 (50%)

Query: 31  VAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH 76
            A     L +  +  +++RD+   NILLD N    + DFG A+ + 
Sbjct: 110 AAEVCLALEYLHSKDIIYRDLKPENILLDKNGHIKITDFGFAKYVP 155

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (114), Expect = 7e-09
 Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 3/65 (4%)

Query: 19  LNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVD 78
            +  + V +++ +A  + YL +      VHRD+++ NIL++ NL   V+DFG +R+L  D
Sbjct: 107 FSVLQLVGMLRGIAAGMKYLANMN---YVHRDLAARNILVNSNLVCKVSDFGLSRVLEDD 163

Query: 79  SSNRT 83
                
Sbjct: 164 PEATY 168

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (114), Expect = 7e-09
 Identities = 14/55 (25%), Positives = 30/55 (54%)

Query: 27  IVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSSN 81
           I + +   L+ L++     ++HRD+ + N+L+  +    +ADFG AR   +  ++
Sbjct: 119 IKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNS 173

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (114), Expect = 9e-09
 Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 6/83 (7%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           +  G L   ++   +    + ++       +   L +LH      +V+RD+  +NILLD 
Sbjct: 85  LNGGDLMYHIQSCHK---FDLSRATFYAAEIILGLQFLHS---KGIVYRDLKLDNILLDK 138

Query: 61  NLEASVADFGTARLLHVDSSNRT 83
           +    +ADFG  +   +  +   
Sbjct: 139 DGHIKIADFGMCKENMLGDAKTN 161

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (113), Expect = 1e-08
 Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 16/96 (16%)

Query: 1   MERGSLFCVLR-------------DDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVV 47
             +G+L   L+               +   +L+    VS    VA  + YL        +
Sbjct: 101 ASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLAS---KKCI 157

Query: 48  HRDISSNNILLDLNLEASVADFGTARLLHVDSSNRT 83
           HRD+++ N+L+  +    +ADFG AR +H     + 
Sbjct: 158 HRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKK 193

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (113), Expect = 1e-08
 Identities = 15/64 (23%), Positives = 28/64 (43%)

Query: 20  NWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDS 79
                  +   +   L  L    + +V+HRD+   N+L++ N E  +A+FG AR   +  
Sbjct: 96  GDLDPEIVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLINRNGELKLANFGLARAFGIPV 155

Query: 80  SNRT 83
              +
Sbjct: 156 RCYS 159

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (111), Expect = 2e-08
 Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 5/83 (6%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
              G L   L+    +  L+    +     ++ AL+YL        VHRDI++ N+L+  
Sbjct: 89  CTLGELRSFLQVRKYS--LDLASLILYAYQLSTALAYLESKR---FVHRDIAARNVLVSS 143

Query: 61  NLEASVADFGTARLLHVDSSNRT 83
           N    + DFG +R +   +  + 
Sbjct: 144 NDCVKLGDFGLSRYMEDSTYYKA 166

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (111), Expect = 2e-08
 Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 3/66 (4%)

Query: 19  LNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVD 78
           L+       +  +   L Y+H     +V+HRD+  +N+LL+   +  + DFG AR+   D
Sbjct: 106 LSNDHICYFLYQILRGLKYIHS---ANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPD 162

Query: 79  SSNRTL 84
             +   
Sbjct: 163 HDHTGF 168

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (110), Expect = 3e-08
 Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 6/83 (7%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           +  G LF  L   +   E      V         +  L H   L +++RDI   NILLD 
Sbjct: 111 INGGELFTHLSQRERFTEHEVQIYV------GEIVLALEHLHKLGIIYRDIKLENILLDS 164

Query: 61  NLEASVADFGTARLLHVDSSNRT 83
           N    + DFG ++    D + R 
Sbjct: 165 NGHVVLTDFGLSKEFVADETERA 187

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (109), Expect = 3e-08
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 3/83 (3%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
            +       +   D ++ L  +   + +      L YLH      ++HRD+  NN+LLD 
Sbjct: 79  FDFMETDLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQHW---ILHRDLKPNNLLLDE 135

Query: 61  NLEASVADFGTARLLHVDSSNRT 83
           N    +ADFG A+     +   T
Sbjct: 136 NGVLKLADFGLAKSFGSPNRAYT 158

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (109), Expect = 4e-08
 Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 4/84 (4%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           +                 L        +  +  +L+Y+H      + HRDI   N+LLD 
Sbjct: 101 VPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHS---FGICHRDIKPQNLLLDP 157

Query: 61  NLEAS-VADFGTARLLHVDSSNRT 83
           +     + DFG+A+ L     N +
Sbjct: 158 DTAVLKLCDFGSAKQLVRGEPNVS 181

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (108), Expect = 5e-08
 Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 5/83 (6%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           M+ G L   +R++     +       +  +       +    +   VHRD+++ N +LD 
Sbjct: 111 MKHGDLRNFIRNETHNPTVKDLIGFGLQVAKG-----MKFLASKKFVHRDLAARNCMLDE 165

Query: 61  NLEASVADFGTARLLHVDSSNRT 83
                VADFG AR ++    +  
Sbjct: 166 KFTVKVADFGLARDMYDKEFDSV 188

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.6 bits (107), Expect = 6e-08
 Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 19  LNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTAR 73
            +          +     YLH    L +++RD+   N+L+D      V DFG A+
Sbjct: 138 FSEPHARFYAAQIVLTFEYLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAK 189

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (106), Expect = 7e-08
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 19  LNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVD 78
           +       ++  +   L +LH      VVHRD+   NIL+  + +  +ADFG AR+    
Sbjct: 113 VPTETIKDMMFQLLRGLDFLHSHR---VVHRDLKPQNILVTSSGQIKLADFGLARIYSFQ 169

Query: 79  SSNRT 83
            +  +
Sbjct: 170 MALTS 174

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (104), Expect = 2e-07
 Identities = 15/52 (28%), Positives = 25/52 (48%)

Query: 31  VAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSSNR 82
            A  +S L +  +  VV+RDI   N++LD +    + DFG  +    D +  
Sbjct: 111 GAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATM 162

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.3 bits (104), Expect = 2e-07
 Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 9/87 (10%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           +  G LF  + +              ++  V  A+ YLH      +VHRD+   N+L   
Sbjct: 89  VSGGELFDRIVEKGF---YTERDASRLIFQVLDAVKYLHDLG---IVHRDLKPENLLYYS 142

Query: 61  ---NLEASVADFGTARLLHVDSSNRTL 84
              + +  ++DFG +++    S   T 
Sbjct: 143 LDEDSKIMISDFGLSKMEDPGSVLSTA 169

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 43.3 bits (101), Expect = 5e-07
 Identities = 14/56 (25%), Positives = 25/56 (44%)

Query: 27  IVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDSSNR 82
               +   L+ + +     V+HRD+   N+L++   E  +ADFG AR   +     
Sbjct: 102 AKSFLLQLLNGIAYCHDRRVLHRDLKPQNLLINREGELKIADFGLARAFGIPVRKY 157

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (100), Expect = 6e-07
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 3/66 (4%)

Query: 18  ELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV 77
            +      S +  +   L++ H      V+HRD+   N+L++      +ADFG AR   V
Sbjct: 98  GIPLPLIKSYLFQLLQGLAFCHSHR---VLHRDLKPQNLLINTEGAIKLADFGLARAFGV 154

Query: 78  DSSNRT 83
                T
Sbjct: 155 PVRTYT 160

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (98), Expect = 1e-06
 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 4/59 (6%)

Query: 19  LNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLN-LEASVADFGTARLLH 76
           L      S    V  A+ + H+     V+HRDI   NIL+DLN  E  + DFG+  LL 
Sbjct: 107 LQEELARSFFWQVLEAVRHCHN---CGVLHRDIKDENILIDLNRGELKLIDFGSGALLK 162

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.7 bits (97), Expect = 2e-06
 Identities = 14/89 (15%), Positives = 30/89 (33%), Gaps = 8/89 (8%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           ++          D    + +        K +   +  +H     S+V+RDI  +N L+  
Sbjct: 80  IDLLGPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIHE---KSLVYRDIKPDNFLIGR 136

Query: 61  NLEAS-----VADFGTARLLHVDSSNRTL 84
               +     V DFG  +      + + +
Sbjct: 137 PNSKNANMIYVVDFGMVKFYRDPVTKQHI 165

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.0 bits (95), Expect = 3e-06
 Identities = 11/66 (16%), Positives = 25/66 (37%), Gaps = 6/66 (9%)

Query: 19  LNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNIL---LDLNLEASVADFGTARLL 75
            +    + +   +   + Y+H     + +HRD+  +N L           + DFG A+  
Sbjct: 100 FSLKTVLLLADQMISRIEYIHS---KNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKY 156

Query: 76  HVDSSN 81
               ++
Sbjct: 157 RDARTH 162

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 40.1 bits (93), Expect = 6e-06
 Identities = 16/83 (19%), Positives = 38/83 (45%), Gaps = 6/83 (7%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           ++  +L  ++  +     +   + + ++     AL++ H +    ++HRD+   NI++  
Sbjct: 93  VDGVTLRDIVHTEGP---MTPKRAIEVIADACQALNFSHQNG---IIHRDVKPANIMISA 146

Query: 61  NLEASVADFGTARLLHVDSSNRT 83
                V DFG AR +    ++ T
Sbjct: 147 TNAVKVMDFGIARAIADSGNSVT 169

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 39.8 bits (92), Expect = 7e-06
 Identities = 14/82 (17%), Positives = 30/82 (36%), Gaps = 10/82 (12%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           +       + +       L        +  +  AL Y H      ++HRD+  +N+++D 
Sbjct: 114 VNNTDFKQLYQ------TLTDYDIRFYMYEILKALDYCHSMG---IMHRDVKPHNVMIDH 164

Query: 61  -NLEASVADFGTARLLHVDSSN 81
            + +  + D+G A   H     
Sbjct: 165 EHRKLRLIDWGLAEFYHPGQEY 186

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 39.4 bits (91), Expect = 7e-06
 Identities = 14/83 (16%), Positives = 31/83 (37%), Gaps = 4/83 (4%)

Query: 2   ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLN 61
           E  ++   L D  E   +       ++  +   ++  +H     +VH D+S  N+L+   
Sbjct: 83  EGNAVLMELIDAKELYRVRVENPDEVLDMILEEVAKFYHRG---IVHGDLSQYNVLVS-E 138

Query: 62  LEASVADFGTARLLHVDSSNRTL 84
               + DF  +  +  +     L
Sbjct: 139 EGIWIIDFPQSVEVGEEGWREIL 161

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (85), Expect = 6e-05
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 3/58 (5%)

Query: 19  LNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH 76
           L   +   +V  +   L Y+H       +HRD+   N+ ++ + E  + DFG AR   
Sbjct: 118 LGEDRIQFLVYQMLKGLRYIHAAGI---IHRDLKPGNLAVNEDCELKILDFGLARQAD 172

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (81), Expect = 2e-04
 Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 27  IVKSVAHALSYLHHDCTLSVVHRDISSNNILLD----LNLEASVADFGTARLLHVDSS 80
             + +   L+ +++  +L + H D+   NI+L           + DFG A  +   + 
Sbjct: 115 ATEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNE 172

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (80), Expect = 3e-04
 Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 3/60 (5%)

Query: 20  NWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDS 79
           +  +   ++  +   + +LH       +HRD+  +NI++  +    + DFG AR      
Sbjct: 117 DHERMSYLLYQMLCGIKHLHSAGI---IHRDLKPSNIVVKSDCTLKILDFGLARTAGTSF 173

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.6 bits (78), Expect = 6e-04
 Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 4/61 (6%)

Query: 1   MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL 60
           +    L  + + +   I L + K+  I K +   L Y+H  C   ++H DI   N+L+++
Sbjct: 106 LGENLLALIKKYEHRGIPLIYVKQ--ISKQLLLGLDYMHRRC--GIIHTDIKPENVLMEI 161

Query: 61  N 61
            
Sbjct: 162 V 162

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	84
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	99.72
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	99.71
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	99.71
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	99.7
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	99.69
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	99.69
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	99.69
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	99.69
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	99.68
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	99.68
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	99.67
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	99.67
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	99.67
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	99.66
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	99.66
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	99.66
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	99.65
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	99.65
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	99.65
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	99.65
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	99.64
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	99.64
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	99.63
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	99.63
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	99.62
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	99.62
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	99.62
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	99.61
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	99.6
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	99.6
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	99.6
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	99.6
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	99.59
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	99.59
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	99.58
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	99.57
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	99.57
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	99.57
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	99.55
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	99.55
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	99.55
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	99.54
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	99.53
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	99.51
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	99.5
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	99.5
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	99.49
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	99.49
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.48
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	99.48
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	99.48
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	99.47
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	99.47
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	99.47
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	99.46
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	99.46
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	99.42
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	99.41
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	99.41
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	99.38
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	99.12
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.06
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	98.87
d2ppqa1	316	Homoserine kinase ThrB {Agrobacterium tumefaciens	92.71
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	92.0
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	90.02
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	84.62

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.1e-17  Score=90.00  Aligned_cols=71  Identities=34%  Similarity=0.571  Sum_probs=63.1

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      |++|+|.+++.....  .+++.....++.|++.|+.|+|+.   +++|+|+++.|++++.+..+|+.|||+++...
T Consensus        85 ~~~g~L~~~l~~~~~--~~~~~~~~~i~~qi~~gl~yLH~~---~ivHrDlKp~NiLl~~~~~~Kl~DFGla~~~~  155 (276)
T d1uwha_          85 CEGSSLYHHLHIIET--KFEMIKLIDIARQTAQGMDYLHAK---SIIHRDLKSNNIFLHEDLTVKIGDFGLATVKS  155 (276)
T ss_dssp             CCEEEHHHHHHTSCC--CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEETTSSEEECCCCCSCC--
T ss_pred             CCCCCHHHHHhhccC--CCCHHHHHHHHHHHHHHHHHHhcC---CEeccccCHHHEEEcCCCCEEEccccceeecc
Confidence            568999999976543  589999999999999999999998   99999999999999999999999999987654

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.5e-17  Score=89.23  Aligned_cols=70  Identities=27%  Similarity=0.431  Sum_probs=63.8

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      |++|+|.+++.+..   .+++..+..++.|++.|+.|+|+.   +++|+|+++.|++++.+..+|+.|||++..+.
T Consensus        85 ~~gg~L~~~l~~~~---~l~e~~~~~i~~qi~~al~ylH~~---~IiHrDiKp~NILl~~~~~~KL~DFG~a~~~~  154 (271)
T d1nvra_          85 CSGGELFDRIEPDI---GMPEPDAQRFFHQLMAGVVYLHGI---GITHRDIKPENLLLDERDNLKISDFGLATVFR  154 (271)
T ss_dssp             CTTEEGGGGSBTTT---BCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEECCCTTCEECE
T ss_pred             cCCCcHHHHHhcCC---CCCHHHHHHHHHHHHHHHHHHHHc---CCccCcccHHHEEECCCCCEEEccchhheeec
Confidence            46899999997654   689999999999999999999998   99999999999999999999999999998764

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.71  E-value=5.2e-17  Score=87.33  Aligned_cols=72  Identities=31%  Similarity=0.512  Sum_probs=65.9

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccCC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVD   78 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~~   78 (84)
                      |++|+|.++|+...   .+++..+..++.|++.|+.|+|..   +++|+|+++.|++++.+...|++|||++..+...
T Consensus        92 ~~~g~L~~~l~~~~---~l~e~~~~~~~~qi~~al~~lH~~---~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~~  163 (277)
T d1phka_          92 MKKGELFDYLTEKV---TLSEKETRKIMRALLEVICALHKL---NIVHRDLKPENILLDDDMNIKLTDFGFSCQLDPG  163 (277)
T ss_dssp             CTTCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTTCEECCTT
T ss_pred             CCCchHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHc---CCcccccccceEEEcCCCCeEEccchheeEccCC
Confidence            56899999998765   589999999999999999999998   9999999999999999999999999999877543

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=3.1e-17  Score=88.99  Aligned_cols=72  Identities=38%  Similarity=0.627  Sum_probs=58.8

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      |++|+|.+++....+  .+++.....++.|++.|+.|+|..   +++|+|+++.|++++.+..+|+.|||+++.+..
T Consensus       109 ~~~g~L~~~~~~~~~--~l~~~~~~~i~~qia~gl~yLH~~---~iiHrDlKp~NILl~~~~~~Kl~DFGla~~~~~  180 (299)
T d1jpaa_         109 MENGSLDSFLRQNDG--QFTVIQLVGMLRGIAAGMKYLADM---NYVHRDLAARNILVNSNLVCKVSDFGLSRFLED  180 (299)
T ss_dssp             CTTEEHHHHHHTTTT--CSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCC--------
T ss_pred             cCCCcceeeeccccC--CCCHHHHHHHHHHHHHHHHHHhhC---CCccCccccceEEECCCCcEEECCcccceEccC
Confidence            578999998887544  589999999999999999999998   999999999999999999999999999987653

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.6e-16  Score=85.99  Aligned_cols=71  Identities=30%  Similarity=0.523  Sum_probs=63.9

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccCC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVD   78 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~~   78 (84)
                      |++|+|.+++.+.    .+++..+..++.|++.|+.|+|+.   +++|+|+++.|++++.+..+++.|||++..+...
T Consensus        99 ~~gg~L~~~~~~~----~l~~~~~~~i~~qi~~aL~yLH~~---~iiHrDiKp~NILl~~~~~vkl~DFG~a~~~~~~  169 (293)
T d1yhwa1          99 LAGGSLTDVVTET----CMDEGQIAAVCRECLQALEFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPE  169 (293)
T ss_dssp             CTTCBHHHHHHHS----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECCST
T ss_pred             cCCCcHHHHhhcc----CCCHHHHHHHHHHHHHHHHHHHHC---CCcccCCcHHHeEECCCCcEeeccchhheeeccc
Confidence            5689999988753    489999999999999999999998   9999999999999999999999999999877543

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=8.2e-17  Score=88.58  Aligned_cols=71  Identities=28%  Similarity=0.380  Sum_probs=65.0

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      |++|+|.+++.+..   .+++..+..++.|++.|+.|+|+.   +++|+|+++.|++++.++.+|+.|||+++....
T Consensus        87 ~~gg~L~~~~~~~~---~~~e~~~~~~~~qil~al~ylH~~---~iiHRDlKP~NILl~~~g~vkl~DFG~a~~~~~  157 (337)
T d1o6la_          87 ANGGELFFHLSRER---VFTEERARFYGAEIVSALEYLHSR---DVVYRDIKLENLMLDKDGHIKITDFGLCKEGIS  157 (337)
T ss_dssp             CTTCBHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCSCC
T ss_pred             cCCCchhhhhhccc---CCcHHHHHHHHHHHhhhhhhhhhc---CccccccCHHHeEecCCCCEEEeeccccccccc
Confidence            57899999998765   589999999999999999999999   999999999999999999999999999987643

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=7.4e-17  Score=86.20  Aligned_cols=71  Identities=30%  Similarity=0.453  Sum_probs=64.6

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      |++|+|.+++.+..   .+++.....++.|++.|+.|+|+.   +++|+|+++.|++++.+..+|+.|||++.....
T Consensus        88 ~~~g~L~~~l~~~~---~l~e~~~~~i~~qi~~al~~lH~~---~ivHrDiKp~Nill~~~~~~kl~DFG~a~~~~~  158 (263)
T d2j4za1          88 APLGTVYRELQKLS---KFDEQRTATYITELANALSYCHSK---RVIHRDIKPENLLLGSAGELKIADFGWSVHAPS  158 (263)
T ss_dssp             CTTCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCCSCSCCCC
T ss_pred             cCCCcHHHHHhhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeeeeeeccccceecCCCCEeecccceeeecCC
Confidence            56899999998755   589999999999999999999998   999999999999999999999999999976553

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.69  E-value=1.4e-16  Score=88.42  Aligned_cols=73  Identities=25%  Similarity=0.290  Sum_probs=65.8

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccCCC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVDS   79 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~~~   79 (84)
                      |++|+|.+++.+..   .+++..+..++.|++.|+.|+|..   +++|+|+++.|++++....+|+.|||++..+....
T Consensus        89 ~~gg~L~~~l~~~~---~~~e~~~~~~~~qi~~aL~ylH~~---~iiHrDlKP~NILl~~~g~iKl~DFGla~~~~~~~  161 (364)
T d1omwa3          89 MNGGDLHYHLSQHG---VFSEADMRFYAAEIILGLEHMHNR---FVVYRDLKPANILLDEHGHVRISDLGLACDFSKKK  161 (364)
T ss_dssp             CCSCBHHHHHHHHC---SCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECSSSCEEECCCTTCEECSSSC
T ss_pred             cCCCcHHHHHHhcc---cccHHHHHHHHHHHHHHHHHHHHC---CccceeeccceeEEcCCCcEEEeeeceeeecCCCc
Confidence            56899999998765   588999999999999999999998   99999999999999999999999999998775443

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=8.5e-17  Score=86.84  Aligned_cols=74  Identities=31%  Similarity=0.509  Sum_probs=65.1

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccCC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVD   78 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~~   78 (84)
                      |++|+|..++...... .+++.....++.|++.|+.|+|..   +++|+|+++.|++++.+..+|++|||+++.....
T Consensus        95 ~~~g~l~~~l~~~~~~-~~~~~~~~~i~~qi~~gL~yLH~~---~iiHrDlKp~NILl~~~~~~Kl~DFG~a~~~~~~  168 (287)
T d1opja_          95 MTYGNLLDYLRECNRQ-EVSAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGD  168 (287)
T ss_dssp             CTTCBHHHHHHHSCTT-TSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCCCTTTCCSS
T ss_pred             ccCcchHHHhhhcccc-chHHHHHHHHHHHHHHHHHHHHHC---CcccCccccCeEEECCCCcEEEccccceeecCCC
Confidence            5689999999765432 588999999999999999999998   9999999999999999999999999999876543

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=9.9e-17  Score=86.53  Aligned_cols=72  Identities=28%  Similarity=0.459  Sum_probs=64.5

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      |++|+|.+++.....  .+++.....++.|++.|+.|+|+.   +++|+|+++.|++++.+..+|+.|||+++.+..
T Consensus        90 ~~~g~L~~~l~~~~~--~l~~~~~~~i~~qi~~gL~ylH~~---~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~  161 (285)
T d1u59a_          90 AGGGPLHKFLVGKRE--EIPVSNVAELLHQVSMGMKYLEEK---NFVHRDLAARNVLLVNRHYAKISDFGLSKALGA  161 (285)
T ss_dssp             CTTEEHHHHHTTCTT--TSCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEEETTEEEECCCTTCEECTT
T ss_pred             CCCCcHHHHhhcccc--CCCHHHHHHHHHHHHHHHHHHHhC---CeecCcCchhheeeccCCceeeccchhhhcccc
Confidence            568999999875443  589999999999999999999998   999999999999999999999999999987654

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=2.1e-16  Score=86.51  Aligned_cols=75  Identities=29%  Similarity=0.452  Sum_probs=64.0

Q ss_pred             CCCCcHHHHHhcCCC--------------------cccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCC
Q 040123            1 MERGSLFCVLRDDDE--------------------AIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL   60 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~--------------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   60 (84)
                      |++|+|.++|++...                    ...+++.....++.|++.|+.|+|+.   +++|+|+++.|++++.
T Consensus       123 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~yLH~~---~IiHRDlKp~Nill~~  199 (325)
T d1rjba_         123 CCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFK---SCVHRDLAARNVLVTH  199 (325)
T ss_dssp             CTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHT---TEEETTCSGGGEEEET
T ss_pred             CCCCcHHHHHHhccCCCcchhhhhccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhC---CeeeccCchhcccccc
Confidence            578999999986532                    12478889999999999999999998   9999999999999999


Q ss_pred             CCcEEEcccccceeccCC
Q 040123           61 NLEASVADFGTARLLHVD   78 (84)
Q Consensus        61 ~~~~~i~~~g~~~~~~~~   78 (84)
                      +..+|++|||+++.....
T Consensus       200 ~~~~Kl~DFGla~~~~~~  217 (325)
T d1rjba_         200 GKVVKICDFGLARDIMSD  217 (325)
T ss_dssp             TTEEEECCCGGGSCGGGC
T ss_pred             CCeEEEeeccccccccCC
Confidence            999999999999876543

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.2e-16  Score=85.94  Aligned_cols=71  Identities=28%  Similarity=0.481  Sum_probs=64.9

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      |++|+|.+++++..   .+++.....++.|++.|+.|+|+.   +++|+|+++.|++++.+..+++.|||+++.+..
T Consensus        89 ~~~g~L~~~l~~~~---~l~~~~~~~i~~qi~~gl~ylH~~---~iiHrDlKp~Nill~~~~~~kl~DFGla~~~~~  159 (277)
T d1xbba_          89 AELGPLNKYLQQNR---HVKDKNIIELVHQVSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKISDFGLSKALRA  159 (277)
T ss_dssp             CTTEEHHHHHHHCT---TCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCCTTCEECCT
T ss_pred             CCCCcHHHHHhhcc---CCCHHHHHHHHHHHHHHHhhHHhC---CcccCCCcchhhcccccCcccccchhhhhhccc
Confidence            57899999998765   589999999999999999999998   999999999999999999999999999987643

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=9.9e-17  Score=86.81  Aligned_cols=74  Identities=27%  Similarity=0.365  Sum_probs=58.3

Q ss_pred             CCCCcHHHHHhcCCC-------------cccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEc
Q 040123            1 MERGSLFCVLRDDDE-------------AIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVA   67 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~-------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~   67 (84)
                      |++|+|.++++....             ...+++.....++.|++.|+.|+|+.   +++|+|+++.|++++.+..+|+.
T Consensus       100 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~---~ivHrDlKp~NILl~~~~~~Kl~  176 (299)
T d1ywna1         100 CKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDLAARNILLSEKNVVKIC  176 (299)
T ss_dssp             CTTCBHHHHHHHTGGGBCC-----------CBCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECGGGCEEEC
T ss_pred             cCCCcHHHHHHhccccccccccchhhhhcccCCHHHHHHHHHHHHHHHHHHHhC---CCcCCcCCccceeECCCCcEEEc
Confidence            568999999975432             12478889999999999999999998   99999999999999999999999


Q ss_pred             ccccceeccC
Q 040123           68 DFGTARLLHV   77 (84)
Q Consensus        68 ~~g~~~~~~~   77 (84)
                      |||+++....
T Consensus       177 DFGla~~~~~  186 (299)
T d1ywna1         177 DFGLARDIYK  186 (299)
T ss_dssp             C------CCS
T ss_pred             cCcchhhccc
Confidence            9999976543

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.8e-16  Score=85.63  Aligned_cols=70  Identities=29%  Similarity=0.488  Sum_probs=62.7

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      |++|+|.+++.+...  .+++..+..++.|++.|+.|+|+.   +++|+|+++.|++++.+..+|+.|||++...
T Consensus        91 ~~~g~L~~~~~~~~~--~l~e~~~~~i~~qi~~gL~ylH~~---~ivHrDiKp~NIll~~~~~~Kl~DFG~a~~~  160 (288)
T d2jfla1          91 CAGGAVDAVMLELER--PLTESQIQVVCKQTLDALNYLHDN---KIIHRDLKAGNILFTLDGDIKLADFGVSAKN  160 (288)
T ss_dssp             CTTEEHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEEC
T ss_pred             CCCCcHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHHC---CEEEeecChhheeECCCCCEEEEechhhhcc
Confidence            568999998775433  589999999999999999999999   9999999999999999999999999998654

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.6e-16  Score=84.80  Aligned_cols=72  Identities=29%  Similarity=0.450  Sum_probs=59.4

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      |++|+|.+++.....  .+++.....++.|++.|+.|+|..   +++|+|+++.|++++.+..+|++|||+++....
T Consensus        82 ~~~g~L~~~l~~~~~--~~~~~~~~~i~~qia~gl~~lH~~---~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~  153 (263)
T d1sm2a_          82 MEHGCLSDYLRTQRG--LFAAETLLGMCLDVCEGMAYLEEA---CVIHRDLAARNCLVGENQVIKVSDFGMTRFVLD  153 (263)
T ss_dssp             CTTCBHHHHHHTTTT--CCCHHHHHHHHHHHHHHHHHHHHT---TCCCTTCSGGGEEECGGGCEEECSCC-------
T ss_pred             cCCCcHHHHhhcccc--CCCHHHHHHHHHHHHHHHHhhhcc---ceeecccchhheeecCCCCeEecccchheeccC
Confidence            568999999876543  588899999999999999999998   999999999999999999999999999876543

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2.2e-16  Score=85.31  Aligned_cols=70  Identities=31%  Similarity=0.552  Sum_probs=64.3

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      |++|+|.+++....   .+++..+..++.|++.|+.|+|..   +++|+|+++.|++++.+..+++.|||+++.+.
T Consensus        90 ~~gg~L~~~~~~~~---~l~e~~~~~~~~qi~~al~ylH~~---~iiHrDiKp~NIll~~~~~vkl~DFG~a~~~~  159 (288)
T d1uu3a_          90 AKNGELLKYIRKIG---SFDETCTRFYTAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLS  159 (288)
T ss_dssp             CTTEEHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTCEECC
T ss_pred             cCCCCHHHhhhccC---CCCHHHHHHHHHHHHHHHHhhccc---cEEcCcCCccccccCCCceEEecccccceecc
Confidence            46899999988765   689999999999999999999999   99999999999999999999999999998764

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=5.6e-16  Score=85.58  Aligned_cols=71  Identities=24%  Similarity=0.375  Sum_probs=64.7

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      +.+|+|..++.+..   .+++..+..++.|++.|+.|+|..   +++|+|+++.|++++.+..+|+.|||+++.+..
T Consensus       123 ~~~g~l~~~l~~~~---~l~e~~~~~i~~qi~~aL~yLH~~---~iiHRDIKP~NILl~~~g~ikL~DFG~a~~~~~  193 (350)
T d1rdqe_         123 VAGGEMFSHLRRIG---RFSEPHARFYAAQIVLTFEYLHSL---DLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG  193 (350)
T ss_dssp             CTTCBHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECSS
T ss_pred             ccccchhhhHhhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CEecCcCCHHHcccCCCCCEEeeeceeeeeccc
Confidence            46899999998765   589999999999999999999998   999999999999999999999999999987754

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2.1e-16  Score=84.71  Aligned_cols=73  Identities=33%  Similarity=0.583  Sum_probs=63.9

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      |++|+|.+++....+ ..+++.....++.|++.|+.|+|..   +++|+|+++.|++++.+..+|++|||+++.+..
T Consensus        89 ~~~g~L~~~~~~~~~-~~l~~~~~~~i~~qi~~gl~~lH~~---~ivHrDiKp~NIll~~~~~~Kl~DFGla~~~~~  161 (272)
T d1qpca_          89 MENGSLVDFLKTPSG-IKLTINKLLDMAAQIAEGMAFIEER---NYIHRDLRAANILVSDTLSCKIADFGLARLIED  161 (272)
T ss_dssp             CTTCBHHHHTTSHHH-HTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTCEECSS
T ss_pred             CCCCcHHHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHHHhC---CcccCccchhheeeecccceeeccccceEEccC
Confidence            568999987764332 2488999999999999999999998   999999999999999999999999999987654

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=99.65  E-value=8.2e-16  Score=84.97  Aligned_cols=74  Identities=26%  Similarity=0.453  Sum_probs=64.1

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeC--CCCcEEEcccccceeccCC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLD--LNLEASVADFGTARLLHVD   78 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~i~~~g~~~~~~~~   78 (84)
                      |++|+|.+++.....  .+++..+..++.|++.|+.|+|..   +++|+|+++.|++++  ....+++.|||++..+...
T Consensus       108 ~~gg~L~~~~~~~~~--~l~e~~~~~i~~qi~~aL~ylH~~---~iiHRDiKp~NILl~~~~~~~vkL~DFGla~~~~~~  182 (352)
T d1koba_         108 LSGGELFDRIAAEDY--KMSEAEVINYMRQACEGLKHMHEH---SIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPD  182 (352)
T ss_dssp             CCCCBHHHHTTCTTC--CBCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTT
T ss_pred             CCCChHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHHC---CeeecccccccccccccCCCeEEEeecccceecCCC
Confidence            568999988775443  589999999999999999999998   999999999999997  4578999999999887654


Q ss_pred             C
Q 040123           79 S   79 (84)
Q Consensus        79 ~   79 (84)
                      .
T Consensus       183 ~  183 (352)
T d1koba_         183 E  183 (352)
T ss_dssp             S
T ss_pred             C
Confidence            3

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=4.9e-16  Score=83.28  Aligned_cols=70  Identities=24%  Similarity=0.421  Sum_probs=61.9

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCC--eEecCCCCCcEEeC-CCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLS--VVHRDISSNNILLD-LNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~l~~~~~~~~-~~~~~~i~~~g~~~~~~   76 (84)
                      |++|+|.+++.+..   .+++.....++.|++.|+.|+|+.   +  ++|+|+++.|++++ .+..+|+.|||+++...
T Consensus        94 ~~~g~L~~~l~~~~---~~~~~~~~~~~~qi~~gl~yLH~~---~~~IiHrDiKp~NILl~~~~~~~Kl~DFGla~~~~  166 (270)
T d1t4ha_          94 MTSGTLKTYLKRFK---VMKIKVLRSWCRQILKGLQFLHTR---TPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKR  166 (270)
T ss_dssp             CCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHTS---SSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCC
T ss_pred             CCCCcHHHHHhccc---cccHHHHHHHHHHHHHHHHHHHHC---CCCEEeCCcChhhceeeCCCCCEEEeecCcceecc
Confidence            56899999998755   588999999999999999999987   6  99999999999996 46789999999997543

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=99.64  E-value=1.2e-15  Score=84.20  Aligned_cols=73  Identities=26%  Similarity=0.459  Sum_probs=63.4

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCC--CCcEEEcccccceeccCC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL--NLEASVADFGTARLLHVD   78 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~i~~~g~~~~~~~~   78 (84)
                      |++|+|.+++.+..+  .+++..+..++.|++.|+.|+|..   +++|+|+++.|+++..  +..+|+.|||++..+...
T Consensus       105 ~~gg~L~~~l~~~~~--~l~e~~~~~i~~qi~~aL~ylH~~---~iiHrDiKp~NIll~~~~~~~vkL~DFG~a~~~~~~  179 (350)
T d1koaa2         105 MSGGELFEKVADEHN--KMSEDEAVEYMRQVCKGLCHMHEN---NYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPK  179 (350)
T ss_dssp             CCSCBHHHHHTCTTS--CBCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSTTSCCEEECCCTTCEECCTT
T ss_pred             CCCCCHHHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHHhc---CCeeeeechhHeeeccCCCCeEEEeecchheecccc
Confidence            578999999965443  589999999999999999999999   9999999999999954  467999999999876543

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=9.1e-16  Score=84.29  Aligned_cols=75  Identities=28%  Similarity=0.502  Sum_probs=64.3

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCC---CCcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL---NLEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~i~~~g~~~~~~~   77 (84)
                      |+||+|.+++.+... ..+++..+..++.|++.|+.|+|..   +++|+|+++.|++++.   ...+|+.|||+++....
T Consensus        91 ~~gg~L~~~i~~~~~-~~l~e~~~~~i~~qi~~al~ylH~~---~iiHRDiKp~NIll~~~~~~~~~Kl~DFG~a~~~~~  166 (335)
T d2ozaa1          91 LDGGELFSRIQDRGD-QAFTEREASEIMKSIGEAIQYLHSI---NIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTS  166 (335)
T ss_dssp             CCSEEHHHHHHSCSC-CCEEHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCSSTTCCEEECCCTTCEECCC
T ss_pred             CCCCcHHHHHHhcCC-CCcCHHHHHHHHHHHHHHHHHHHHc---CCccccccccccccccccccccccccccceeeeccC
Confidence            568999999986533 2589999999999999999999998   9999999999999975   34689999999987654


Q ss_pred             CC
Q 040123           78 DS   79 (84)
Q Consensus        78 ~~   79 (84)
                      ..
T Consensus       167 ~~  168 (335)
T d2ozaa1         167 HN  168 (335)
T ss_dssp             CC
T ss_pred             CC
Confidence            33

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.63  E-value=2.1e-15  Score=82.27  Aligned_cols=72  Identities=33%  Similarity=0.500  Sum_probs=64.2

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccCC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVD   78 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~~   78 (84)
                      |+||++..++....   .+++.....++.|++.|+.|+|+.   +++|+|+++.|++++.+..+|+.|||+++.....
T Consensus        86 ~~gg~l~~~~~~~~---~~~~~~~~~~~~qi~~al~~lH~~---~iiHrDiKp~NILl~~~g~vkL~DFG~a~~~~~~  157 (316)
T d1fota_          86 IEGGELFSLLRKSQ---RFPNPVAKFYAAEVCLALEYLHSK---DIIYRDLKPENILLDKNGHIKITDFGFAKYVPDV  157 (316)
T ss_dssp             CCSCBHHHHHHHTS---SCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECTTSCEEECCCSSCEECSSC
T ss_pred             cCCccccccccccc---cccccHHHHHHHHHHHhhhhhccC---cEEccccCchheeEcCCCCEEEecCccceEeccc
Confidence            56889999888765   578888889999999999999988   9999999999999999999999999999876543

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=2e-16  Score=86.49  Aligned_cols=70  Identities=30%  Similarity=0.451  Sum_probs=62.9

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhc-CCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHH-DCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      |++|+|.+++.+..   .+++.....++.|++.|+.|+|+ .   +++|+|+++.|++++.+..+|+.|||++..+.
T Consensus        86 ~~gg~L~~~l~~~~---~l~~~~~~~~~~qil~aL~yLH~~~---~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~  156 (322)
T d1s9ja_          86 MDGGSLDQVLKKAG---RIPEQILGKVSIAVIKGLTYLREKH---KIMHRDVKPSNILVNSRGEIKLCDFGVSGQLI  156 (322)
T ss_dssp             CTTEEHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHHH---CCCCSCCSGGGEEECTTCCEEECCCCCCHHHH
T ss_pred             CCCCcHHHHHhhcC---CCCHHHHHHHHHHHHHHHHHHHHhC---CEEccccCHHHeeECCCCCEEEeeCCCccccC
Confidence            56899999998755   58999999999999999999996 5   79999999999999999999999999987654

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.62  E-value=1.1e-15  Score=83.22  Aligned_cols=71  Identities=24%  Similarity=0.407  Sum_probs=57.0

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeC---CCCcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLD---LNLEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~i~~~g~~~~~~~   77 (84)
                      |+||+|.+++....   .+++..+..++.|++.|+.|+|+.   +++|+|+++.|+++.   .+..+++.|||+++....
T Consensus        89 ~~gg~L~~~l~~~~---~l~e~~~~~~~~qi~~al~ylH~~---~iiHrDiKp~Nil~~~~~~~~~vkl~DFG~a~~~~~  162 (307)
T d1a06a_          89 VSGGELFDRIVEKG---FYTERDASRLIFQVLDAVKYLHDL---GIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDP  162 (307)
T ss_dssp             CCSCBHHHHHHTCS---CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESSSSTTCCEEECCC--------
T ss_pred             cCCCcHHHhhhccc---CCCHHHHHHHHHHHHHHHHhhhhc---eeeeEEecccceeecccCCCceEEEeccceeEEccC
Confidence            46899999998654   699999999999999999999998   999999999999995   357899999999976543

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.6e-15  Score=82.93  Aligned_cols=71  Identities=24%  Similarity=0.443  Sum_probs=64.5

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      |++|+|.+++....   .+++..+..++.|++.|+.|+|+.   +++|+|+++.|++++....+++.|||+++....
T Consensus        85 ~~~g~L~~~i~~~~---~~~e~~~~~~~~qi~~al~ylH~~---~iiHrDikp~NiL~~~~~~~kl~DFG~a~~~~~  155 (320)
T d1xjda_          85 LNGGDLMYHIQSCH---KFDLSRATFYAAEIILGLQFLHSK---GIVYRDLKLDNILLDKDGHIKIADFGMCKENML  155 (320)
T ss_dssp             CTTCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCCCC
T ss_pred             cCCCcHHHHhhccC---CCCHHHHHHHHHHHHHHHHHHHhC---CeeeccCcccceeecCCCceeccccchhhhccc
Confidence            57899999998765   588999999999999999999999   999999999999999999999999999986543

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.62  E-value=7.9e-16  Score=83.78  Aligned_cols=71  Identities=23%  Similarity=0.346  Sum_probs=62.2

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      |++|++..++....   .+++..+..++.|++.|+.|+|..   +++|+|+++.|++++.+..+|++|||++.....
T Consensus        97 ~~~g~l~~~~~~~~---~l~e~~~~~i~~qi~~aL~yLH~~---~iiHrDiKp~NILl~~~~~~Kl~DFG~a~~~~~  167 (309)
T d1u5ra_          97 CLGSASDLLEVHKK---PLQEVEIAAVTHGALQGLAYLHSH---NMIHRDVKAGNILLSEPGLVKLGDFGSASIMAP  167 (309)
T ss_dssp             CSEEHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEEETTTEEEECCCTTCBSSSS
T ss_pred             cCCCchHHHHHhCC---CCCHHHHHHHHHHHHHHHHHHHhC---CEeccCCCcceEEECCCCCEEEeecccccccCC
Confidence            45677776666554   589999999999999999999999   999999999999999999999999999886543

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.5e-15  Score=81.72  Aligned_cols=72  Identities=38%  Similarity=0.619  Sum_probs=59.2

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      |.+|++..++.....  .+++.....++.|++.|+.|+|+.   +++|+|+++.|++++.+..+|+.|||+++.+..
T Consensus        91 ~~~~~l~~~~~~~~~--~~~~~~~~~i~~~i~~gl~~lH~~---~iiHrDlKp~NILl~~~~~~Kl~DFGla~~~~~  162 (283)
T d1mqba_          91 MENGALDKFLREKDG--EFSVLQLVGMLRGIAAGMKYLANM---NYVHRDLAARNILVNSNLVCKVSDFGLSRVLED  162 (283)
T ss_dssp             CTTEEHHHHHHHTTT--CSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCCCC------
T ss_pred             cccCcchhhhhcccc--cccHHHHHHHHHHHHHhhhhcccc---ccccCccccceEEECCCCeEEEcccchhhcccC
Confidence            456788887776543  588999999999999999999998   999999999999999999999999999987644

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=3.5e-15  Score=82.08  Aligned_cols=69  Identities=26%  Similarity=0.506  Sum_probs=62.4

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      .+|+|.+++...    .+++..+..++.|++.|+.|+|+.   +++|+|+++.|++++....+++.|||++.....
T Consensus        93 ~~g~L~~~l~~~----~l~~~~i~~i~~qil~al~yLH~~---~iiHRDIKp~NILl~~~~~~kl~DfG~a~~~~~  161 (345)
T d1pmea_          93 MGADLYKLLKTQ----HLSNDHICYFLYQILRGLKYIHSA---NVLHRDLKPSNLLLNTTCDLKICDFGLARVADP  161 (345)
T ss_dssp             CCEEHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEECCG
T ss_pred             cCCchhhhhhcC----CCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCCCcceEEECCCCCEEEcccCceeeccC
Confidence            478999999754    489999999999999999999999   999999999999999999999999999876543

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2.2e-16  Score=84.59  Aligned_cols=77  Identities=29%  Similarity=0.416  Sum_probs=57.1

Q ss_pred             CCCCcHHHHHhcCC-CcccCCHHHHHHHHHHHHHHHHHHhcCC--CCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDD-EAIELNWTKRVSIVKSVAHALSYLHHDC--TLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      |++|+|.+++.+.. ....+++..+..++.|++.|+.|+|+..  ..+++|+|+++.|++++.+..+|+.|||+++.+..
T Consensus        87 ~~~g~L~~~i~~~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~~~~~~IiHrDiKp~NIll~~~~~vkl~DFG~a~~~~~  166 (269)
T d2java1          87 CEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNH  166 (269)
T ss_dssp             CTTEEHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHCC---------CCGGGEEECTTSCEEECCHHHHHHC--
T ss_pred             CCCCcHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEeCcCchhhcCcCCCCcEEEeeccceeeccc
Confidence            46899999987432 1225899999999999999999999761  12499999999999999999999999999887643

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=6.3e-15  Score=80.52  Aligned_cols=72  Identities=31%  Similarity=0.424  Sum_probs=62.6

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCC--CCcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL--NLEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~i~~~g~~~~~~~   77 (84)
                      |+||+|.+++.....  .+++..+..++.|++.|+.|+|..   +++|+|+++.|++++.  ...+++.|||++.....
T Consensus        83 ~~gg~L~~~i~~~~~--~l~e~~~~~i~~qi~~al~yLH~~---~iiHrDlKp~NIll~~~~~~~ikl~DFG~~~~~~~  156 (321)
T d1tkia_          83 ISGLDIFERINTSAF--ELNEREIVSYVHQVCEALQFLHSH---NIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKP  156 (321)
T ss_dssp             CCCCBHHHHHTSSSC--CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSCCCEEECCCTTCEECCT
T ss_pred             CCCCcHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHHc---CCCcccccccceeecCCCceEEEEcccchhhcccc
Confidence            468999999986542  589999999999999999999998   9999999999999974  35789999999887654

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=5.5e-15  Score=79.79  Aligned_cols=72  Identities=25%  Similarity=0.424  Sum_probs=63.6

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCC----cEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNL----EASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~i~~~g~~~~~~   76 (84)
                      |++|+|.+++.+..   .+++..+..++.|++.|+.|+|..   +++|+|+++.|++++...    .+++.|||++....
T Consensus        95 ~~gg~L~~~i~~~~---~l~~~~~~~~~~qi~~al~yLH~~---~ivHrDiKp~Nill~~~~~~~~~vkl~DfG~a~~~~  168 (293)
T d1jksa_          95 VAGGELFDFLAEKE---SLTEEEATEFLKQILNGVYYLHSL---QIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKID  168 (293)
T ss_dssp             CCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCSSSSSCCEEECCCTTCEECT
T ss_pred             CCCccccchhcccc---ccchhHHHHHHHHHHHHHHhhhhc---ceeecccccceEEEecCCCcccceEecchhhhhhcC
Confidence            57899999998755   589999999999999999999999   999999999999997654    48999999998775


Q ss_pred             CC
Q 040123           77 VD   78 (84)
Q Consensus        77 ~~   78 (84)
                      ..
T Consensus       169 ~~  170 (293)
T d1jksa_         169 FG  170 (293)
T ss_dssp             TS
T ss_pred             CC
Confidence            43

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.5e-15  Score=82.78  Aligned_cols=72  Identities=26%  Similarity=0.503  Sum_probs=63.8

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      +.+|+|.+++.....  .+++.....++.|++.|+.|+|..   +++|+|+++.|++++.+..+|+.|||+++.+..
T Consensus        92 ~~~~~l~~~~~~~~~--~~~~~~~~~i~~qi~~gl~yLH~~---~iiHrDlKp~NIll~~~~~~kl~DFGla~~~~~  163 (317)
T d1xkka_          92 MPFGCLLDYVREHKD--NIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLGA  163 (317)
T ss_dssp             CTTCBHHHHHHHTSS--SCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEETTEEEECCCSHHHHTTT
T ss_pred             ccCCccccccccccc--CCCHHHHHHHHHHHHHHHHHHHHc---CcccCcchhhcceeCCCCCeEeeccccceeccc
Confidence            457889888876543  688999999999999999999998   999999999999999999999999999887644

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.3e-15  Score=81.59  Aligned_cols=72  Identities=28%  Similarity=0.412  Sum_probs=57.0

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      |++|++.+++.....  .+++.....++.|++.|+.|+|+.   +++|+|+++.|++++.+..+|+.|||+++.+..
T Consensus        89 ~~~g~l~~~~~~~~~--~l~~~~~~~~~~qi~~gl~ylH~~---~iiHrDlKp~NIll~~~~~~Kl~DfG~a~~~~~  160 (273)
T d1mp8a_          89 CTLGELRSFLQVRKY--SLDLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDFGLSRYMED  160 (273)
T ss_dssp             CTTEEHHHHHHHTTT--TSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECC---------
T ss_pred             ccCCcHHhhhhccCC--CCCHHHHHHHHHHHHHHhhhhccc---CeeccccchhheeecCCCcEEEccchhheeccC
Confidence            468899988776543  588999999999999999999999   999999999999999999999999999987643

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=4e-15  Score=79.78  Aligned_cols=73  Identities=27%  Similarity=0.403  Sum_probs=63.8

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccCC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVD   78 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~~   78 (84)
                      |++|++.+++....+  .+++.....++.|++.|+.|+|..   +++|+|+++.|++++.+..+|+.|||+++.+...
T Consensus        92 ~~~~~l~~~~~~~~~--~l~~~~~~~~~~qi~~gl~ylH~~---~iiHrDikp~NIll~~~~~vkl~DfGl~~~~~~~  164 (273)
T d1u46a_          92 APLGSLLDRLRKHQG--HFLLGTLSRYAVQVAEGMGYLESK---RFIHRDLAARNLLLATRDLVKIGDFGLMRALPQN  164 (273)
T ss_dssp             CTTCBHHHHHHHHGG--GSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEEEETTEEEECCCTTCEECCC-
T ss_pred             ecCcchhhhhhcccC--CCCHHHHHHHHHHHHHHHHHhhhC---CEeeeeecHHHhccccccceeeccchhhhhcccC
Confidence            467888887776443  589999999999999999999998   9999999999999999999999999999876543

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=9.5e-15  Score=77.78  Aligned_cols=73  Identities=29%  Similarity=0.482  Sum_probs=63.7

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccCC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVD   78 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~~   78 (84)
                      +++|++..++.....  .+++.....++.|++.|+.|+|..   +++|+|+++.|++++.+..+|+.|||+++.+...
T Consensus        81 ~~~g~l~~~~~~~~~--~~~~~~~~~i~~qi~~gl~~LH~~---~iiH~dlk~~Nill~~~~~~kl~DfG~a~~~~~~  153 (258)
T d1k2pa_          81 MANGCLLNYLREMRH--RFQTQQLLEMCKDVCEAMEYLESK---QFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDD  153 (258)
T ss_dssp             CTTEEHHHHHHSGGG--CCCHHHHHHHHHHHHHHHHHHHHT---TBCCSCCSGGGEEECTTCCEEECCCSSCCBCSSS
T ss_pred             cCCCcHHHhhhcccc--CCcHHHHHHHHHHHHHHHHHHhhc---CcccccccceeEEEcCCCcEEECcchhheeccCC
Confidence            457889888765443  578889999999999999999998   9999999999999999999999999999876543

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.3e-14  Score=78.94  Aligned_cols=73  Identities=29%  Similarity=0.459  Sum_probs=64.1

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccCC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVD   78 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~~   78 (84)
                      |++|+|.+++.....  .+++.....++.|++.|+.|+|..   +++|+|+++.|++++.+..+|++|||+++.+...
T Consensus       111 ~~~g~l~~~~~~~~~--~~~~~~~~~i~~qia~gL~~lH~~---~iiHrDLK~~NILl~~~~~~kL~DFG~~~~~~~~  183 (311)
T d1r0pa_         111 MKHGDLRNFIRNETH--NPTVKDLIGFGLQVAKGMKFLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDK  183 (311)
T ss_dssp             CTTCBHHHHHHCTTC--CCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTCCEEECSSGGGCCTTTT
T ss_pred             eecCchhhhhccccc--cchHHHHHHHHHHHHHhhhhhccc---CcccCCccHHhEeECCCCCEEEecccchhhcccc
Confidence            568999998886543  467788889999999999999998   9999999999999999999999999999876543

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.5e-15  Score=81.89  Aligned_cols=72  Identities=36%  Similarity=0.591  Sum_probs=61.2

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      |++|+|..++...... .+++..+..++.|++.|+.|+|..   +++|+|+++.|++++.+..+|++|||+++.+.
T Consensus        93 ~~~g~l~~~~~~~~~~-~l~~~~~~~i~~~i~~gl~~LH~~---~ivH~DlKp~NIll~~~~~~kl~DfGla~~~~  164 (285)
T d1fmka3          93 MSKGSLLDFLKGETGK-YLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIE  164 (285)
T ss_dssp             CTTCBHHHHHSHHHHT-TCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCCTTC---
T ss_pred             cCCCchhhhhhhcccc-cchHHHHHHHHHHHHHHHHHHhhh---heecccccceEEEECCCCcEEEcccchhhhcc
Confidence            4688998887753322 589999999999999999999998   99999999999999999999999999997654

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=2.5e-14  Score=77.41  Aligned_cols=74  Identities=30%  Similarity=0.435  Sum_probs=64.6

Q ss_pred             CCCCcHHHHHhcCCC-------------cccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEc
Q 040123            1 MERGSLFCVLRDDDE-------------AIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVA   67 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~-------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~   67 (84)
                      |++|+|.++|+....             ...+++.....++.|++.|+.|+|+.   +++|+|+++.|++++.+...|+.
T Consensus       101 ~~~g~l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~ylH~~---~ivHrDiKp~NiLl~~~~~~kl~  177 (299)
T d1fgka_         101 ASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASK---KCIHRDLAARNVLVTEDNVMKIA  177 (299)
T ss_dssp             CTTCBHHHHHHTTSCC------------CCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTCCEEEC
T ss_pred             cCCCcHHHHHHhhcCCccccccccccCccccCCHHHHHHHHHHHHHHHHHhhhC---CEEeeeecccceeecCCCCeEec
Confidence            568999999976531             12478999999999999999999999   99999999999999999999999


Q ss_pred             ccccceeccC
Q 040123           68 DFGTARLLHV   77 (84)
Q Consensus        68 ~~g~~~~~~~   77 (84)
                      |||++.....
T Consensus       178 dfg~~~~~~~  187 (299)
T d1fgka_         178 DFGLARDIHH  187 (299)
T ss_dssp             STTCCCCGGG
T ss_pred             cchhhccccc
Confidence            9999886644

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.55  E-value=5.1e-15  Score=80.18  Aligned_cols=74  Identities=31%  Similarity=0.490  Sum_probs=62.5

Q ss_pred             CCCCcHHHHHhcCCC---------------------cccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeC
Q 040123            1 MERGSLFCVLRDDDE---------------------AIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLD   59 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~---------------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~   59 (84)
                      +++|+|.+++.....                     ...+++.....++.|++.|+.|+|..   +++|+|+++.|++++
T Consensus        98 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~ylH~~---~ivHrDlKp~NILld  174 (301)
T d1lufa_          98 MAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSER---KFVHRDLATRNCLVG  174 (301)
T ss_dssp             CTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEC
T ss_pred             cCCCcHHHHHHhcCccccccccccccchhhhccccCCCCCCHHHHHHHHHHHHHHhhhcccC---CeEeeEEcccceEEC
Confidence            467899999875331                     11377888999999999999999998   999999999999999


Q ss_pred             CCCcEEEcccccceeccC
Q 040123           60 LNLEASVADFGTARLLHV   77 (84)
Q Consensus        60 ~~~~~~i~~~g~~~~~~~   77 (84)
                      .+..+|++|||+++.+..
T Consensus       175 ~~~~~Kl~DFGls~~~~~  192 (301)
T d1lufa_         175 ENMVVKIADFGLSRNIYS  192 (301)
T ss_dssp             GGGCEEECCCSCHHHHTG
T ss_pred             CCCcEEEccchhheeccC
Confidence            999999999999876543

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=8.4e-15  Score=80.06  Aligned_cols=71  Identities=30%  Similarity=0.412  Sum_probs=63.9

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      |++|+|.+++....   .+++.....++.|++.|+.|+|..   +++|+|+++.|++++.+..+++.|||+++.+..
T Consensus       111 ~~~~~L~~~i~~~~---~~~e~~~~~~~~Qi~~al~~lH~~---~ivHrDiKp~Nill~~~~~vkL~DFG~a~~~~~  181 (322)
T d1vzoa_         111 INGGELFTHLSQRE---RFTEHEVQIYVGEIVLALEHLHKL---GIIYRDIKLENILLDSNGHVVLTDFGLSKEFVA  181 (322)
T ss_dssp             CCSCBHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEESCSSEEEECCG
T ss_pred             ccccHHHHHHHhcc---cccHHHHHHHHHHHHHHHHHhhcC---CEEeccCCccceeecCCCCEEEeeccchhhhcc
Confidence            46899999998765   577888999999999999999998   999999999999999999999999999987654

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=3.1e-14  Score=77.20  Aligned_cols=73  Identities=32%  Similarity=0.398  Sum_probs=63.1

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCC-----CCCeEecCCCCCcEEeCCCCcEEEcccccceec
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDC-----TLSVVHRDISSNNILLDLNLEASVADFGTARLL   75 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~   75 (84)
                      |++|+|.+++++.    .+++.....++.+++.++.|+|...     ..+++|+|+++.|++++.+..+|+.|||+++..
T Consensus        83 ~~~g~L~~~l~~~----~l~~~~~~~~~~~ia~gl~~lH~~~~~~~~~~~IvHrDlKp~NILl~~~~~~Kl~DFGl~~~~  158 (303)
T d1vjya_          83 HEHGSLFDYLNRY----TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRH  158 (303)
T ss_dssp             CTTCBHHHHHHHC----CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCCTTCEEE
T ss_pred             ccCCCHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCeeccccCccceEEcCCCCeEEEecCccccc
Confidence            5689999999864    4888999999999999999999631     238999999999999999999999999998876


Q ss_pred             cC
Q 040123           76 HV   77 (84)
Q Consensus        76 ~~   77 (84)
                      ..
T Consensus       159 ~~  160 (303)
T d1vjya_         159 DS  160 (303)
T ss_dssp             ET
T ss_pred             cC
Confidence            44

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.4e-14  Score=77.81  Aligned_cols=73  Identities=32%  Similarity=0.498  Sum_probs=63.6

Q ss_pred             CCCCcHHHHHhcCC-------------CcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEc
Q 040123            1 MERGSLFCVLRDDD-------------EAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVA   67 (84)
Q Consensus         1 ~~~g~L~~~l~~~~-------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~   67 (84)
                      +++|+|.++|....             ....+++.....++.|++.|+.|+|+.   +++|+|+++.|++++.+..+|+.
T Consensus        93 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~~lH~~---~iiHrDlkp~NIL~~~~~~~kl~  169 (309)
T d1fvra_          93 APHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK---QFIHRDLAARNILVGENYVAKIA  169 (309)
T ss_dssp             CTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECGGGCEEEC
T ss_pred             cCCCcHHHHHhhccccccchhhhccccccCCCCHHHHHHHHHHHHHHHHhhhcC---CccccccccceEEEcCCCceEEc
Confidence            46899999997542             123688999999999999999999999   99999999999999999999999


Q ss_pred             ccccceecc
Q 040123           68 DFGTARLLH   76 (84)
Q Consensus        68 ~~g~~~~~~   76 (84)
                      |||+++...
T Consensus       170 DfG~a~~~~  178 (309)
T d1fvra_         170 DFGLSRGQE  178 (309)
T ss_dssp             CTTCEESSC
T ss_pred             ccccccccc
Confidence            999987543

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.6e-14  Score=78.09  Aligned_cols=57  Identities=33%  Similarity=0.463  Sum_probs=52.7

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123           18 ELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus        18 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      .+++..+..++.|++.|+.|+|..   +++|+|+++.|++++.+..+|+.|||++.....
T Consensus        96 ~l~~~~~~~~~~qil~aL~~lH~~---~iiHrDiKp~NIli~~~~~~KL~DFG~a~~~~~  152 (299)
T d1ua2a_          96 VLTPSHIKAYMLMTLQGLEYLHQH---WILHRDLKPNNLLLDENGVLKLADFGLAKSFGS  152 (299)
T ss_dssp             SCCSSHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECCCGGGSTTTS
T ss_pred             CCCHHHHHHHHHHHHHHHHHhhcc---ceecccCCcceEEecCCCccccccCccccccCC
Confidence            588889999999999999999998   999999999999999999999999999976643

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=5.8e-14  Score=77.32  Aligned_cols=58  Identities=29%  Similarity=0.426  Sum_probs=52.4

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCC-CcEEEcccccceeccCC
Q 040123           18 ELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLN-LEASVADFGTARLLHVD   78 (84)
Q Consensus        18 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~i~~~g~~~~~~~~   78 (84)
                      .+++..+..++.|++.|+.|+|+.   +++|+|+++.|++++.+ ..+|+.|||++..+...
T Consensus       118 ~l~~~~~~~i~~qil~aL~yLH~~---~IiHrDiKp~NILl~~~~~~~kl~DFG~a~~~~~~  176 (350)
T d1q5ka_         118 TLPVIYVKLYMYQLFRSLAYIHSF---GICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRG  176 (350)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECTTTCCEEECCCTTCEECCTT
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhc---CCcccCCCcceEEEecCCCceeEecccchhhccCC
Confidence            589999999999999999999988   99999999999999866 48999999999876543

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=9.8e-14  Score=74.51  Aligned_cols=71  Identities=24%  Similarity=0.352  Sum_probs=61.1

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccCC
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVD   78 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~~   78 (84)
                      .++++..++....   .+++.....++.|++.|+.|+|..   +++|+|+++.|+++......++.|||.+......
T Consensus        84 ~~~~l~~~~~~~~---~~~~~~~~~~~~q~~~aL~~lH~~---~IvHrDiKP~NIli~~~~~~kl~DFG~a~~~~~~  154 (292)
T d1unla_          84 DQDLKKYFDSCNG---DLDPEIVKSFLFQLLKGLGFCHSR---NVLHRDLKPQNLLINRNGELKLANFGLARAFGIP  154 (292)
T ss_dssp             SEEHHHHHHHTTT---CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECCSC
T ss_pred             ccccccccccccc---ccchhHHHHHHHHHHHHHHHhhcC---CEeeecccCcccccccCCceeeeecchhhcccCC
Confidence            3566666666544   588899999999999999999998   9999999999999999999999999999876543

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=4.8e-14  Score=75.48  Aligned_cols=68  Identities=34%  Similarity=0.440  Sum_probs=59.3

Q ss_pred             CcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCC-CCcEEEcccccceeccC
Q 040123            4 GSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL-NLEASVADFGTARLLHV   77 (84)
Q Consensus         4 g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~i~~~g~~~~~~~   77 (84)
                      +++.+++.+..   .+++..+..++.|++.|+.|+|+.   +++|+|+++.|++++. +..+++.|||++.....
T Consensus        95 ~~l~~~~~~~~---~l~e~~~~~~~~qi~~al~~lH~~---~iiHrDiKp~NIll~~~~~~vkl~DFG~a~~~~~  163 (273)
T d1xwsa_          95 QDLFDFITERG---ALQEELARSFFWQVLEAVRHCHNC---GVLHRDIKDENILIDLNRGELKLIDFGSGALLKD  163 (273)
T ss_dssp             EEHHHHHHHHC---SCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEETTTTEEEECCCTTCEECCS
T ss_pred             chHHHHHhccC---CCCHHHHHHHHHHHHHHHHHHHHC---CCccccCcccceEEecCCCeEEECccccceeccc
Confidence            57777877654   589999999999999999999999   9999999999999985 46899999999976543

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.49  E-value=5e-14  Score=75.46  Aligned_cols=70  Identities=21%  Similarity=0.489  Sum_probs=62.6

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      |+||+|..++....   .+++.....++.|++.|+.|+|+.   +++|+|+++.|++++.+...++.+||.+....
T Consensus        93 ~~g~~L~~~~~~~~---~l~~~~~~~i~~qi~~al~~lH~~---~iiHrDiKP~NIll~~~~~~~l~d~~~~~~~~  162 (277)
T d1o6ya_          93 VDGVTLRDIVHTEG---PMTPKRAIEVIADACQALNFSHQN---GIIHRDVKPANIMISATNAVKVMDFGIARAIA  162 (277)
T ss_dssp             CCEEEHHHHHHHHC---SCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTSCEEECCCTTCEECC
T ss_pred             CCCCEehhhhcccC---CCCHHHHHHHHHHHHHHHHHHHhC---CccCccccCcccccCccccceeehhhhhhhhc
Confidence            46789998887765   589999999999999999999998   99999999999999999999999999876543

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.7e-14  Score=76.93  Aligned_cols=73  Identities=30%  Similarity=0.446  Sum_probs=60.1

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHV   77 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~   77 (84)
                      +++|+|.+++.+.... .+++.....++.|++.|+.|+|+.   +++|+|+++.|++++.+..+++.|||+++....
T Consensus        83 ~~~g~L~~~l~~~~~~-~l~~~~~~~i~~~i~~al~ylH~~---~ivH~dlkp~Nil~~~~~~~kl~dfg~s~~~~~  155 (262)
T d1byga_          83 MAKGSLVDYLRSRGRS-VLGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASS  155 (262)
T ss_dssp             CTTEEHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTSCEEECCCCC------
T ss_pred             cCCCCHHHHHHhcCCC-CCCHHHHHHHHHHHHhhccccccC---ceeccccchHhheecCCCCEeecccccceecCC
Confidence            4689999999764321 488999999999999999999998   999999999999999999999999999886543

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=8.7e-14  Score=75.61  Aligned_cols=74  Identities=28%  Similarity=0.473  Sum_probs=63.6

Q ss_pred             CCCCcHHHHHhcCCC---------------cccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEE
Q 040123            1 MERGSLFCVLRDDDE---------------AIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEAS   65 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~---------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~   65 (84)
                      |++|+|.++++....               ...+++.....++.|++.|+.|+|..   +++|+|+++.|++++.+..++
T Consensus       109 ~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~~LH~~---~ivHrDLKp~NIl~~~~~~~k  185 (311)
T d1t46a_         109 CCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASK---NCIHRDLAARNILLTHGRITK  185 (311)
T ss_dssp             CTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEETTTEEE
T ss_pred             CCCCCHHHHHHhccccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhC---CeeecccccccccccccCccc
Confidence            468899999876432               12478889999999999999999999   999999999999999999999


Q ss_pred             EcccccceeccC
Q 040123           66 VADFGTARLLHV   77 (84)
Q Consensus        66 i~~~g~~~~~~~   77 (84)
                      +.|||.++....
T Consensus       186 i~DfG~~~~~~~  197 (311)
T d1t46a_         186 ICDFGLARDIKN  197 (311)
T ss_dssp             ECCCGGGSCTTS
T ss_pred             ccccchheeccC
Confidence            999999987654

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=99.48  E-value=1.4e-13  Score=75.11  Aligned_cols=69  Identities=20%  Similarity=0.353  Sum_probs=57.7

Q ss_pred             CCCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCC-CcEEEcccccceeccCC
Q 040123            1 MERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLN-LEASVADFGTARLLHVD   78 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~i~~~g~~~~~~~~   78 (84)
                      |++|+|..+.+      .+++..+..++.|++.|+.|+|+.   +++|+|+++.|++++.. ..+++.|||++......
T Consensus       114 ~~~~~L~~~~~------~l~e~~i~~i~~qil~aL~~LH~~---gIvHrDiKp~NILi~~~~~~vkl~DFG~a~~~~~~  183 (328)
T d3bqca1         114 VNNTDFKQLYQ------TLTDYDIRFYMYEILKALDYCHSM---GIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPG  183 (328)
T ss_dssp             CCSCBGGGTTT------SCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTTEEEECCGGGCEECCTT
T ss_pred             cCCCcHHHHhc------CCCHHHHHHHHHHHHHHHHHHhhc---ccccccccccceEEcCCCCeeeecccccceeccCC
Confidence            35667665432      588999999999999999999998   99999999999999754 46899999999876543

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.4e-13  Score=74.76  Aligned_cols=73  Identities=26%  Similarity=0.477  Sum_probs=61.9

Q ss_pred             CCCCcHHHHHhcCCC-------cccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccce
Q 040123            1 MERGSLFCVLRDDDE-------AIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTAR   73 (84)
Q Consensus         1 ~~~g~L~~~l~~~~~-------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~   73 (84)
                      |++|+|.+++.....       ...+++.....++.|++.|+.|+|..   +++|+|+++.|++++.+..+|++|||+++
T Consensus       105 ~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~gl~~LH~~---~ivHrDlk~~NiLld~~~~~Kl~DFGla~  181 (308)
T d1p4oa_         105 MTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIGDFGMTR  181 (308)
T ss_dssp             CTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCSGGGEEECTTCCEEECCTTCCC
T ss_pred             cCCCCHHHHHHhcccccccccccCCCCHHHHHHHHHHHHHHHHHHhhC---CeeeceEcCCceeecCCceEEEeecccce
Confidence            468999998874321       11357788899999999999999998   99999999999999999999999999987


Q ss_pred             ecc
Q 040123           74 LLH   76 (84)
Q Consensus        74 ~~~   76 (84)
                      .+.
T Consensus       182 ~~~  184 (308)
T d1p4oa_         182 DIY  184 (308)
T ss_dssp             GGG
T ss_pred             ecc
Confidence            654

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.47  E-value=4.9e-13  Score=72.13  Aligned_cols=70  Identities=23%  Similarity=0.248  Sum_probs=60.8

Q ss_pred             CCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCC-----CCcEEEcccccceeccC
Q 040123            3 RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL-----NLEASVADFGTARLLHV   77 (84)
Q Consensus         3 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~i~~~g~~~~~~~   77 (84)
                      +|+|.+++.....  .++......++.|++.++.|+|+.   +++|+|+++.|+++..     ...+++.|||+++.+..
T Consensus        84 ~~~l~~~~~~~~~--~~~~~~~~~i~~q~~~~l~~lH~~---giiHrDiKp~Nili~~~~~~~~~~vkl~DFG~a~~~~~  158 (293)
T d1csna_          84 GPSLEDLLDLCGR--KFSVKTVAMAAKQMLARVQSIHEK---SLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRD  158 (293)
T ss_dssp             CCBHHHHHHHTTT--CCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBC
T ss_pred             CCCHHHHHHhhcc--chhhHHHHHHHHHHHHHHHHHHHC---CceeccCCccceeecCcccccCCceEEcccceeEEccc
Confidence            6889988876543  588999999999999999999988   9999999999999964     45789999999987654

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=9.3e-14  Score=75.07  Aligned_cols=69  Identities=23%  Similarity=0.347  Sum_probs=58.3

Q ss_pred             CcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            4 GSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         4 g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      |++..++...... .+++..+..++.|++.|+.|+|..   +++|+|+++.||+++.+..+++.|||+++...
T Consensus        85 ~~~~~~~~~~~~~-~l~e~~~~~~~~qil~~L~yLH~~---~IiHrDiKpeNIl~~~~~~~kl~DFG~a~~~~  153 (298)
T d1gz8a_          85 QDLKKFMDASALT-GIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLARAFG  153 (298)
T ss_dssp             EEHHHHHHHTTTT-CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECSTTHHHHHC
T ss_pred             Cchhhhhhhhccc-CCCHHHHHHHHHHHHHHHHHhhcC---CEEccccCchheeecccCcceeccCCcceecc
Confidence            4555555443322 589999999999999999999999   99999999999999999999999999987654

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=99.46  E-value=6.5e-14  Score=75.23  Aligned_cols=56  Identities=30%  Similarity=0.513  Sum_probs=52.5

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123           18 ELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus        18 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      .+++.....++.|++.|+.|+|..   +++|+|+++.|++++.+..+++.|||.+....
T Consensus        96 ~l~~~~~~~i~~qi~~~L~~LH~~---~IvHrDiKp~NIll~~~~~~kl~DfG~a~~~~  151 (286)
T d1ob3a_          96 GLESVTAKSFLLQLLNGIAYCHDR---RVLHRDLKPQNLLINREGELKIADFGLARAFG  151 (286)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECCTTHHHHHC
T ss_pred             CcchhhhHHHHHHHHHHHHHhccC---cEEecCCCCceeeEcCCCCEEecccccceecc
Confidence            689999999999999999999998   99999999999999999999999999987654

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.7e-13  Score=75.16  Aligned_cols=68  Identities=22%  Similarity=0.411  Sum_probs=57.9

Q ss_pred             CCCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123            2 ERGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus         2 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      .+|+|.+++...    .+++..+..++.|++.|+.|+|..   +++|+|+++.|++++.+...++.|||++....
T Consensus       105 ~gg~L~~~~~~~----~l~e~~~~~i~~qil~aL~~LH~~---giiHrDiKp~NILi~~~~~~kl~dfg~a~~~~  172 (348)
T d2gfsa1         105 MGADLNNIVKCQ----KLTDDHVQFLIYQILRGLKYIHSA---DIIHRDLKPSNLAVNEDCELKILDFGLARHTD  172 (348)
T ss_dssp             CSEEHHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECCC----CCT
T ss_pred             cCCchhhhcccc----cccHHHHHHHHHHHHHHHHHHHhC---CCcccccCCccccccccccccccccchhcccC
Confidence            578999988643    489999999999999999999999   99999999999999999999999999986554

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.42  E-value=1.2e-12  Score=70.60  Aligned_cols=71  Identities=20%  Similarity=0.340  Sum_probs=59.0

Q ss_pred             CCcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCC---CCcEEEcccccceeccCC
Q 040123            3 RGSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDL---NLEASVADFGTARLLHVD   78 (84)
Q Consensus         3 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~i~~~g~~~~~~~~   78 (84)
                      +|++...+.....  .+++..+..++.|++.++.|+|..   +++|+|+++.|+++..   +..+++.|||+++.+...
T Consensus        86 ~~~l~~~~~~~~~--~~~~~~~~~~~~qi~~~l~~lH~~---~iiHrDiKp~NIl~~~~~~~~~vkl~DFG~a~~~~~~  159 (299)
T d1ckia_          86 GPSLEDLFNFCSR--KFSLKTVLLLADQMISRIEYIHSK---NFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDA  159 (299)
T ss_dssp             CCBHHHHHHHTTT--CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECCGGGTTCEEECCCSSCEECBCT
T ss_pred             CCchhhhhhhccC--CCcHHHHHHHHHHHHHHHHHHHHC---CeeeccCCHhhccccccCCCceeeeeccCcceecccc
Confidence            5677776655443  589999999999999999999999   9999999999998753   456999999999877543

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.1e-12  Score=72.00  Aligned_cols=68  Identities=24%  Similarity=0.437  Sum_probs=59.0

Q ss_pred             CcHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceeccCC
Q 040123            4 GSLFCVLRDDDEAIELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLHVD   78 (84)
Q Consensus         4 g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~~~   78 (84)
                      ++|..+++..    .+++.....++.|++.|+.|+|..   +++|+|+++.|++++.+..+++.|||++......
T Consensus       107 ~~l~~~~~~~----~l~~~~~~~~~~qi~~aL~~LH~~---~IiHrDiKp~NIL~~~~~~~kl~Dfg~a~~~~~~  174 (346)
T d1cm8a_         107 TDLGKLMKHE----KLGEDRIQFLVYQMLKGLRYIHAA---GIIHRDLKPGNLAVNEDCELKILDFGLARQADSE  174 (346)
T ss_dssp             EEHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEECCSS
T ss_pred             ccHHHHHHhc----cccHHHHHHHHHHHHHHHHHHHhC---CCcccccCcchhhcccccccccccccceeccCCc
Confidence            4555555432    489999999999999999999998   9999999999999999999999999999876543

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=7.3e-13  Score=71.57  Aligned_cols=56  Identities=30%  Similarity=0.485  Sum_probs=51.8

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123           18 ELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus        18 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      .+++.....++.|++.|+.|+|..   +++|+|+++.|++++.....++.|||++....
T Consensus       112 ~~~~~~~~~~~~qi~~aL~yLH~~---~ivHrDiKp~NILi~~~~~~kl~dfg~~~~~~  167 (305)
T d1blxa_         112 GVPTETIKDMMFQLLRGLDFLHSH---RVVHRDLKPQNILVTSSGQIKLADFGLARIYS  167 (305)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECSCCSCCCCC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhC---CEEecCCCccEEEEcCCCCeeecchhhhhhhc
Confidence            588899999999999999999998   99999999999999999999999999987543

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.1e-12  Score=71.27  Aligned_cols=56  Identities=25%  Similarity=0.530  Sum_probs=52.0

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123           18 ELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus        18 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      .+++.....++.|++.|+.|+|+.   +++|+|+++.|++++.+..+++.|||++..+.
T Consensus       113 ~~~~~~~~~i~~qil~~l~~lH~~---~ivHrDlKp~NILl~~~~~~kl~dfg~~~~~~  168 (318)
T d3blha1         113 KFTLSEIKRVMQMLLNGLYYIHRN---KILHRDMKAANVLITRDGVLKLADFGLARAFS  168 (318)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCCTTCEECC
T ss_pred             ccccHHHHHHHHHHHHHHHHhccC---CEEecCcCchheeecCCCcEEeeecceeeecc
Confidence            578888999999999999999998   99999999999999999999999999987654

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=1.2e-10  Score=64.12  Aligned_cols=56  Identities=25%  Similarity=0.460  Sum_probs=48.7

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123           18 ELNWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus        18 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      .+++..+..++.|++.|+.|+|..   +++|+|+++.|+++..+...++.|||+++...
T Consensus       115 ~~~~~~i~~~~~qil~gl~~LH~~---giiHrDlKP~Nil~~~~~~~kl~df~~~~~~~  170 (355)
T d2b1pa1         115 ELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLARTAG  170 (355)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCCCC-----
T ss_pred             CCCHHHHHHHHHHHHHHHHHhhhc---ccccccCCccccccccccceeeechhhhhccc
Confidence            478899999999999999999999   99999999999999999999999999876543

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.06  E-value=1.2e-10  Score=59.24  Aligned_cols=53  Identities=17%  Similarity=0.274  Sum_probs=44.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHhcCCCCCeEecCCCCCcEEeCCCCcEEEcccccceecc
Q 040123           20 NWTKRVSIVKSVAHALSYLHHDCTLSVVHRDISSNNILLDLNLEASVADFGTARLLH   76 (84)
Q Consensus        20 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~~~   76 (84)
                      +......++.|++.++.++|..   +++|+|++|.|++++.+ .+++.|||.+....
T Consensus       101 ~~~~~~~i~~ql~~~l~~lH~~---giiHrDiKP~NILv~~~-~~~liDFG~a~~~~  153 (191)
T d1zara2         101 RVENPDEVLDMILEEVAKFYHR---GIVHGDLSQYNVLVSEE-GIWIIDFPQSVEVG  153 (191)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHT---TEECSCCSTTSEEEETT-EEEECCCTTCEETT
T ss_pred             hhHHHHHHHHHHHHHHHHHhhC---CEEEccCChhheeeeCC-CEEEEECCCcccCC
Confidence            3344567889999999999998   99999999999999854 57889999987664

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.87  E-value=4e-09  Score=57.82  Aligned_cols=57  Identities=25%  Similarity=0.423  Sum_probs=48.9

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHhc-CCCCCeEecCCCCCcEEeCCCC------cEEEcccccceeccC
Q 040123           18 ELNWTKRVSIVKSVAHALSYLHH-DCTLSVVHRDISSNNILLDLNL------EASVADFGTARLLHV   77 (84)
Q Consensus        18 ~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~------~~~i~~~g~~~~~~~   77 (84)
                      .+++..+..++.|++.|+.|+|. .   +++|+|+++.|++++...      .+++.|||.+.....
T Consensus       121 ~~~~~~i~~i~~qil~al~~lh~~~---~IvHrDlKp~NIll~~~~~~~~~~~~kl~dfg~s~~~~~  184 (362)
T d1q8ya_         121 GIPLIYVKQISKQLLLGLDYMHRRC---GIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDE  184 (362)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHTT---CEECSCCSGGGEEEEEEETTTTEEEEEECCCTTCEETTB
T ss_pred             CCcHHHHHHHHHHHHHHHHHHhhhc---CcccccCChhHeeeeccCcccccceeeEeeccccccccc
Confidence            57888999999999999999997 6   899999999999996543      379999999876543

>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Homoserine kinase ThrB
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=92.71  E-value=0.029  Score=29.64  Aligned_cols=30  Identities=23%  Similarity=0.285  Sum_probs=26.0

Q ss_pred             CCeEecCCCCCcEEeCCCCcEEEcccccce
Q 040123           44 LSVVHRDISSNNILLDLNLEASVADFGTAR   73 (84)
Q Consensus        44 ~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~   73 (84)
                      .+++|.|+...|++++.+....+.||+.+.
T Consensus       183 ~giIHgDl~~dNvl~~~~~v~gvIDF~~~~  212 (316)
T d2ppqa1         183 AGVIHADLFQDNVFFLGDELSGLIDFYFAC  212 (316)
T ss_dssp             EEEECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred             cccccCCcchhhhhcccccceeEecccccc
Confidence            378999999999999988777899998664

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=92.00  E-value=0.072  Score=27.16  Aligned_cols=30  Identities=20%  Similarity=0.320  Sum_probs=24.9

Q ss_pred             CeEecCCCCCcEEeCCCCcEEEccccccee
Q 040123           45 SVVHRDISSNNILLDLNLEASVADFGTARL   74 (84)
Q Consensus        45 ~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~   74 (84)
                      .++|.|+.+.|++++.+....+.||..+..
T Consensus       184 ~l~HgD~~~~Nil~~~~~~~~lIDwe~a~~  213 (263)
T d1j7la_         184 VFSHGDLGDSNIFVKDGKVSGFIDLGRSGR  213 (263)
T ss_dssp             EEECSCCCTTSEEEETTEEEEECCCTTCEE
T ss_pred             EEEEeeccCcceeecCCceEEEeechhccc
Confidence            478999999999998776667999986654

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=90.02  E-value=0.096  Score=26.54  Aligned_cols=30  Identities=23%  Similarity=0.285  Sum_probs=25.0

Q ss_pred             CeEecCCCCCcEEeCCCCcEEEccccccee
Q 040123           45 SVVHRDISSNNILLDLNLEASVADFGTARL   74 (84)
Q Consensus        45 ~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~   74 (84)
                      .++|.|+.+.|+++..+....++||..+..
T Consensus       176 ~liHgD~~~~Nvl~~~~~~~~iID~~~~~~  205 (255)
T d1nd4a_         176 VVTHGDACLPNIMVENGRFSGFIDCGRLGV  205 (255)
T ss_dssp             EEECSSCCGGGEEEETTEEEEECCCTTCEE
T ss_pred             eEEeCCCCCcceEEeCCceEEEEEchhccc
Confidence            479999999999998776677999987654

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=84.62  E-value=0.55  Score=25.68  Aligned_cols=30  Identities=23%  Similarity=0.295  Sum_probs=24.6

Q ss_pred             CCeEecCCCCCcEEeCCCCcEEEccccccee
Q 040123           44 LSVVHRDISSNNILLDLNLEASVADFGTARL   74 (84)
Q Consensus        44 ~~~~~~~l~~~~~~~~~~~~~~i~~~g~~~~   74 (84)
                      ..++|+|+.+.|++++.+ .+++.||-.+..
T Consensus       223 ~~LiHGDl~~gNIlv~~~-~~~vID~E~a~~  252 (392)
T d2pula1         223 ETLIHGDLHTGSIFASEH-ETKVIDPEFAFY  252 (392)
T ss_dssp             CEEECSCCCGGGEEECSS-CEEECCCTTCEE
T ss_pred             cceeccCCcCCceeEcCC-ceEEechhhccc
Confidence            368999999999999765 478999876654