Citrus Sinensis ID: 040160

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------46
MREIVTVQVGGFANFIGSHFWNFQDELLGLASDPNNDPVFRNQCLNMDVLYRTGETQQGVLTYTPRLVSVGFQGSLGSMSSRGVLYNESSPGPSDVVTWSGSVSTHASAPRKKNLFLQRLYEEEQESFSMINGTSSGKSDSQREIQDKDIVELLDNHVEFWTDFSKVHYHPQSLYELGGLWMDPQDFDNYGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGFSAVAADLLENIADEYANTPVLLFSVRSPSSQMNLRSRKQTIFRELHDTVSFSRLASFSKLIVPVGLPFLSESKASTFLRIENEKPYHCSAVYAAALHSATLPYRMEPVGPTADSFDVSGAVDFNGFVQMLAGQARQNTVVILDAAMPAPALNGKQHEQSLLGNLQPLTPEVSEDVEDLQAVESMIIHGALRSDGQRASISEVKETVNAIYGHAITRPMFCHLSVAR
cccEEEEEccccccHHHHHHHHHHHccccccccccccccccccccccccEEccccccccEEEEEEEEEEEEcccccccccccccccccccccccccccccccEEEEEcccccccHHHHHHHHHHHccccccccccccccccHHHHccccccccccccEEEEcccccccccccccccccccccccccccccHHHHHHHHcccccHHHHHHHHHHHHcccccccEEEEEccccccHHHHHHHHHHHHHHHccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHccccEEEEccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHcccccccHHHHHHHccccccccccccHHHHHccccccccccccccccccHHHEEEEEccccccccccccHHHHHHHHHHHHcccccccEEEEccccc
ccEEEEEEEcccHcHHHHHHHHHHHHHcccccccccccccccccccccEEEEccccccccEEEccEEEEEEccccccccHHcccccccccccccccccccccEEEEEcccccccHHHHHHHHcccccccccccccccccHHHHHccccccccccccccEEEccccEEEEccccEEEccccccccccHHcccccHHHHcccHHHHHHHHHHHHHHHHHHccccEEEEEEccccHHHHHHHHHHHHHHHccccEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHccEEEEccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHcccccccEEEEEcccccccccccccHHHHHHcccccccccccccccccccEEEEEEEcccccccccccHHHHHHHHHHHHHcccccccccEcEccc
MREIVTVQVGGFANFIGSHFWNFQDEllglasdpnndpvfrnqclnmDVLYrtgetqqgvltytprlvsvgfqgslgsmssrgvlynesspgpsdvvtwsgsvsthasaprkkNLFLQRLYEEEQESfsmingtssgksdsqreiqDKDIVELLDNHVEFwtdfskvhyhpqslyelgglwmdpqdfdnygigkdafsegfrgEEICERLRFFVeesdhiqgfqfvvddsggfSAVAADLLENIAdeyantpvllfsvrspssqmnlrsRKQTIFRELHDTVSFSRLASFsklivpvglpflseskastflrienekpyhcSAVYAAALHsatlpyrmepvgptadsfdvsgavdfNGFVQMLAGQARQNTVVILDaampapalngkqheqsllgnlqpltpevsedvEDLQAVESMIIHGalrsdgqrasISEVKETVNAIYGHAITRPMFCHLSVAR
MREIVTVQVGGFANFIGSHFWNFQDELLGLASDPNNDPVFRNQCLNMDVLYRTGETQQGVLTYTPRLVSVGFQGSLGSMSSRGVLYNESSPGPSDVVTWSGSvsthasaprkkNLFLQRLYEEEQESfsmingtssgksdsqREIQDKDIVELLDNHVEFWTDFSKVHYHPQSLYELGGLWMDPQDFDNYGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGFSAVAADLLENIADEYANTPVLLfsvrspssqmnLRSRKQTIFRELHDTVSFSRLASFSKLIVPVGLPFLSESKASTFLRIENEKPYHCSAVYAAALHSATLPYRMEPVGPTADSFDVSGAVDFNGFVQMLAGQARQNTVVILDAAMPAPALNGKQHEQSLLGNLQPLTPEVSEDVEDLQAVESMIIHGalrsdgqrasISEVKETVNAIYGHAITRPMFCHLSVAR
MREIVTVQVGGFANFIGSHFWNFQDELLGLASDPNNDPVFRNQCLNMDVLYRTGETQQGVLTYTPRLVSVGFQGSLGSMSSRGVLYNESSPGPSDVVTWSGSVSTHASAPRKKNLFLQRLYEEEQESFSMINGTSSGKSDSQREIQDKDIVELLDNHVEFWTDFSKVHYHPQSLYELGGLWMDPQDFDNYGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGFSAVAADLLENIADEYANTPVLLFSVRSPSSQMNLRSRKQTIFRELHDTVSFSRLASFSKLIVPVGLPFLSESKASTFLRIENEKPYHCSAVYAAALHSATLPYRMEPVGPTADSFDVSGAVDFNGFVQMLAGQARQNTVVILDAAMPAPALNGKQHEQSLLGNLQPLTPEVSEDVEDLQAVESMIIHGALRSDGQRASISEVKETVNAIYGHAITRPMFCHLSVAR
***IVTVQVGGFANFIGSHFWNFQDELLGLASDPNNDPVFRNQCLNMDVLYRTGETQQGVLTYTPRLVSVGFQGSL************************************************************************DIVELLDNHVEFWTDFSKVHYHPQSLYELGGLWMDPQDFDNYGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGFSAVAADLLENIADEYANTPVLLFSV**************TIFRELHDTVSFSRLASFSKLIVPVGLPFLSESKASTFLRIENEKPYHCSAVYAAALHSATLPYRMEPVGPTADSFDVSGAVDFNGFVQMLAGQARQNTVVILDAAM**********************************VESMIIHGAL********ISEVKETVNAIYGHAITRPMFCHLS***
MREIVTVQVGGFANFIGSHFWNFQDELLGLASDPNNDPVFRNQCLNMDVLYRTGETQQGVLTYTPRLVSVGFQGSLGSMSSRGVLYN**********TW***********************************************DKDIVELLDNHVEFWTDFSKVHYHPQSLYELGGLWMDPQDFDNYGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGFSAVAADLLENIADEYANTPVLLFSVRSP*************FRELHDTVSFSRLASFSKLIVPVGLPFLSESKASTFLRIENEKPYHCSAVYAAALHSATLPYRMEPVG******DVSGAVDFNGFVQMLAGQARQNTVVILDAAMPA**********SLLGNLQPLTPEVSEDVEDLQAVESMIIHGA*****************************FCHL****
MREIVTVQVGGFANFIGSHFWNFQDELLGLASDPNNDPVFRNQCLNMDVLYRTGETQQGVLTYTPRLVSVGFQGSLGSMSSRGVLYNESSPGPSDVVT**********APRKKNLFLQRLYEEEQE******************IQDKDIVELLDNHVEFWTDFSKVHYHPQSLYELGGLWMDPQDFDNYGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGFSAVAADLLENIADEYANTPVLLFSVRS********SRKQTIFRELHDTVSFSRLASFSKLIVPVGLPFLSESKASTFLRIENEKPYHCSAVYAAALHSATLPYRMEPVGPTADSFDVSGAVDFNGFVQMLAGQARQNTVVILDAAMPAPALNGKQHEQSLLGNLQPLTPEVSEDVEDLQAVESMIIHGALRSDGQRASISEVKETVNAIYGHAITRPMFCHLSVAR
MREIVTVQVGGFANFIGSHFWNFQDELLGLASDPNNDPVFRNQCLNMDVLYRTGETQQGVLTYTPRLVSVGFQGSLGSMSSRGVLYNESSPGPSDVVTWSGSVSTHASAPRKKNLFLQRLYEE***************SDSQREIQDKDIVELLDNHVEFWTDFSKVHYHPQSLYELGGLWMDPQDFDNYGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGFSAVAADLLENIADEYANTPVLLFSVRSPSSQMNLRSRKQTIFRELHDTVSFSRLASFSKLIVPVGLPFLSESKASTFLRIENEKPYHCSAVYAAALHSATLPYRME***********SGAVDFNGFVQMLAGQARQNTVVILDAAMPAPALNGKQHEQSLLGNLQPLTPEVSEDVEDLQAVESMIIHGALRSDGQRASISEVKETVNAIYGHAITRPM********
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MREIVTVQVGGFANFIGSHFWNFQDELLGLASDPNNDPVFRNQCLNMDVLYRTGETQQGVLTYTPRLVSVGFQGSLGSMSSRGVLYNESSPGPSDVVTWSGSVSTHASAPRKKNLFLQRLYEEEQESFSMINGTSSGKSDSQREIQDKDIVELLDNHVEFWTDFSKVHYHPQSLYELGGLWMDPQDFDNYGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGFSAVAADLLENIADEYANTPVLLFSVRSPSSQMNLRSRKQTIFRELHDTVSFSRLASFSKLIVPVGLPFLSESKASTFLRIENEKPYHCSAVYAAALHSATLPYRMEPVGPTADSFDVSGAVDFNGFVQMLAGQARQNTVVILDAAMPAPALNGKQHEQSLLGNLQPLTPEVSEDVEDLQAVESMIIHGALRSDGQRASISEVKETVNAIYGHAITRPMFCHLSVAR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query459 2.2.26 [Sep-21-2011]
Q9BUK6 570 Protein misato homolog 1 yes no 0.825 0.664 0.310 1e-45
Q2YDW2 556 Protein misato homolog 1 yes no 0.812 0.670 0.316 5e-45
Q5RF82 570 Protein misato homolog 1 N/A no 0.825 0.664 0.305 1e-44
Q4R681 569 Protein misato homolog 1 N/A no 0.825 0.666 0.302 7e-44
A5D9D4 572 Protein misato homolog 1 yes no 0.821 0.659 0.306 1e-43
Q1L908 591 Protein misato homolog 1 yes no 0.732 0.568 0.309 1e-37
O01939 574 Protein misato OS=Drosoph yes no 0.712 0.569 0.294 1e-31
Q7S2Y8 540 Protein dml-1 OS=Neurospo N/A no 0.732 0.622 0.269 2e-30
A1CNV1499 Protein dml1 OS=Aspergill N/A no 0.657 0.605 0.247 1e-26
Q4IBL8484 Protein DML1 OS=Gibberell yes no 0.644 0.611 0.271 2e-25
>sp|Q9BUK6|MSTO1_HUMAN Protein misato homolog 1 OS=Homo sapiens GN=MSTO1 PE=1 SV=1 Back     alignment and function desciption
 Score =  184 bits (468), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 129/416 (31%), Positives = 195/416 (46%), Gaps = 37/416 (8%)

Query: 2   REIVTVQVGGFANFIGSHFWNFQDELLGLASDPNNDPVFRNQCLNMDVLYRTGETQQGVL 61
           RE++T+Q+G FA F+G+H+WN QD  LG A+D    P      L  DVLYRTG T  G  
Sbjct: 6   REVLTLQLGHFAGFVGAHWWNQQDAALGRATDSKEPPGE----LCPDVLYRTGRTLHGQE 61

Query: 62  TYTPRLVSVGFQGSLGSMSSRGVLYNESSPGPSDVVTWSGSVSTHASAPRKKNLFLQRLY 121
           TYTPRL+ +  +GSL S+   G LY +        + W G ++TH      KN +LQ   
Sbjct: 62  TYTPRLILMDLKGSLSSLKEEGGLYRDKQL--DAAIAWQGKLTTHKEELYPKNPYLQDFL 119

Query: 122 EEE----QESFSMINGTSSGKSDSQ--REIQDKDIVELLDNHVEFWTDFSKVHYHPQSLY 175
             E     +    +    +GK  S        K ++   +  +  W+DF +VH HP+S+ 
Sbjct: 120 SAEGVLSSDGVWRVKSIPNGKGSSPLPTATTPKPLIPT-EASIRVWSDFLRVHLHPRSIC 178

Query: 176 ELGGLWMDPQ--DFDNYGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGF 233
            +     D +    + +G G+    E    EE+ +RL F+VEE D++QGFQ + D   GF
Sbjct: 179 MIQKYNHDGEAGRLEAFGQGESVLKEPKYQEELEDRLHFYVEECDYLQGFQILCDLHDGF 238

Query: 234 SAVAADLLENIADEYANTPVLLFSVRSPSSQMNLRSRKQTIFRELHDTVSFSRLASFSKL 293
           S V A   E + DEY+   ++ + +       +    ++ I+R L+       L + S L
Sbjct: 239 SGVGAKAAELLQDEYSGRGIITWGLL--PGPYHRGEAQRNIYRLLNTAFGLVHLTAHSSL 296

Query: 294 IVPV----GLPFLSESKAS-TFLRIENEKPYHCSAVYAAALHSATLPYRMEPVGPTADSF 348
           + P+     L    E   S  +L  +   P+HCSA+ A AL + T+PYR+          
Sbjct: 297 VCPLSLGGSLGLRPEPPVSFPYLHYDATLPFHCSAILATALDTVTVPYRL---------- 346

Query: 349 DVSGAVDFNGFVQMLAGQARQNTVVILDAAMPAPALNGKQHEQSLL--GNLQPLTP 402
             S  V       ML+   ++  VV   A +P P   G+    SL+  G   P TP
Sbjct: 347 -CSSPVSMVHLADMLSFCGKK--VVTAGAIIPFPLAPGQSLPDSLMQFGGATPWTP 399
Involved in the regulation of mitochondrial distribution and morphology.
Homo sapiens (taxid: 9606)
>sp|Q2YDW2|MSTO1_MOUSE Protein misato homolog 1 OS=Mus musculus GN=Msto1 PE=2 SV=1 Back     alignment and function description
>sp|Q5RF82|MSTO1_PONPY Protein misato homolog 1 OS=Pongo pygmaeus GN=MSTO1 PE=2 SV=1 Back     alignment and function description
>sp|Q4R681|MSTO1_MACFA Protein misato homolog 1 OS=Macaca fascicularis GN=MSTO1 PE=2 SV=2 Back     alignment and function description
>sp|A5D9D4|MSTO1_BOVIN Protein misato homolog 1 OS=Bos taurus GN=MSTO1 PE=2 SV=2 Back     alignment and function description
>sp|Q1L908|MSTO1_DANRE Protein misato homolog 1 OS=Danio rerio GN=msto1 PE=2 SV=1 Back     alignment and function description
>sp|O01939|MST_DROME Protein misato OS=Drosophila melanogaster GN=mst PE=2 SV=1 Back     alignment and function description
>sp|Q7S2Y8|DML1_NEUCR Protein dml-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=dml-1 PE=3 SV=2 Back     alignment and function description
>sp|A1CNV1|DML1_ASPCL Protein dml1 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=dml1 PE=3 SV=1 Back     alignment and function description
>sp|Q4IBL8|DML1_GIBZE Protein DML1 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=DML1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query459
359480437 575 PREDICTED: protein misato homolog 1-like 1.0 0.798 0.729 0.0
224061153 574 predicted protein [Populus trichocarpa] 0.995 0.796 0.704 0.0
255562643 574 conserved hypothetical protein [Ricinus 0.991 0.792 0.705 0.0
356496864 572 PREDICTED: protein misato homolog 1-like 0.995 0.798 0.683 0.0
356537686 572 PREDICTED: protein misato homolog 1-like 0.995 0.798 0.683 0.0
449448342 568 PREDICTED: protein misato homolog 1-like 0.986 0.797 0.676 1e-179
357483023 566 Misato-like protein [Medicago truncatula 0.982 0.796 0.65 1e-174
15235474 562 uncharacterized protein [Arabidopsis tha 0.967 0.790 0.662 1e-167
297798192 562 hypothetical protein ARALYDRAFT_912663 [ 0.967 0.790 0.662 1e-167
110739205 562 tubulin-like protein [Arabidopsis thalia 0.967 0.790 0.660 1e-166
>gi|359480437|ref|XP_002263195.2| PREDICTED: protein misato homolog 1-like [Vitis vinifera] gi|302144155|emb|CBI23282.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  705 bits (1819), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/459 (72%), Positives = 384/459 (83%)

Query: 1   MREIVTVQVGGFANFIGSHFWNFQDELLGLASDPNNDPVFRNQCLNMDVLYRTGETQQGV 60
           MREIVT+QVGGFANFIGSHFWNFQDELLGLA DPN DP+F+NQ L+MDVLYRTGET QG+
Sbjct: 1   MREIVTIQVGGFANFIGSHFWNFQDELLGLAGDPNGDPIFKNQHLDMDVLYRTGETLQGI 60

Query: 61  LTYTPRLVSVGFQGSLGSMSSRGVLYNESSPGPSDVVTWSGSVSTHASAPRKKNLFLQRL 120
            TYTPRLVSV FQGSLGSMSS G LY+ + P PS VVTW G+VSTH S P KKNLFLQ L
Sbjct: 61  ATYTPRLVSVNFQGSLGSMSSHGTLYDHNPPVPSHVVTWPGNVSTHLSEPHKKNLFLQSL 120

Query: 121 YEEEQESFSMINGTSSGKSDSQREIQDKDIVELLDNHVEFWTDFSKVHYHPQSLYELGGL 180
           YEEEQE+ + ++G +SGK+D + EIQDKDIVE L+N V+FWTDFSKVHYHPQSLYEL GL
Sbjct: 121 YEEEQENLAPMDGINSGKNDCESEIQDKDIVESLENGVQFWTDFSKVHYHPQSLYELNGL 180

Query: 181 WMDPQDFDNYGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGFSAVAADL 240
           WMD QDF+NYGIG D FSEG RGEE+ ERLRFFVEE DHIQG QFVVDDSGGFS+VAAD 
Sbjct: 181 WMDAQDFNNYGIGMDVFSEGLRGEEMNERLRFFVEECDHIQGIQFVVDDSGGFSSVAADF 240

Query: 241 LENIADEYANTPVLLFSVRSPSSQMNLRSRKQTIFRELHDTVSFSRLASFSKLIVPVGLP 300
           LENIADEY NTP+LL++VR P S MN RSR+QT+  +LHD +SFSRL+SF KLIVP+GLP
Sbjct: 241 LENIADEYTNTPILLYTVRGPESYMNRRSRRQTMASDLHDAISFSRLSSFCKLIVPIGLP 300

Query: 301 FLSESKASTFLRIENEKPYHCSAVYAAALHSATLPYRMEPVGPTADSFDVSGAVDFNGFV 360
            L  SK S++L +E+EKPYHCSAVYAAALHS +LP+RME +GP  DS  VSGAVD  G +
Sbjct: 301 LLGRSKVSSYLCLEDEKPYHCSAVYAAALHSISLPFRMETLGPAMDSCYVSGAVDVYGLI 360

Query: 361 QMLAGQARQNTVVILDAAMPAPALNGKQHEQSLLGNLQPLTPEVSEDVEDLQAVESMIIH 420
           QMLAGQARQN V  LDA MPAP+L GKQ EQSLLG+L P TPE++EDVEDLQ VES+ IH
Sbjct: 361 QMLAGQARQNIVATLDAVMPAPSLTGKQVEQSLLGSLHPFTPEIAEDVEDLQEVESLTIH 420

Query: 421 GALRSDGQRASISEVKETVNAIYGHAITRPMFCHLSVAR 459
           GA  S G RAS+SEV++TV+A Y +A T+P+F HLSVA 
Sbjct: 421 GAFGSGGYRASVSEVEDTVHAAYENATTKPLFSHLSVAH 459

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224061153|ref|XP_002300359.1| predicted protein [Populus trichocarpa] gi|222847617|gb|EEE85164.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255562643|ref|XP_002522327.1| conserved hypothetical protein [Ricinus communis] gi|223538405|gb|EEF40011.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|356496864|ref|XP_003517285.1| PREDICTED: protein misato homolog 1-like [Glycine max] Back     alignment and taxonomy information
>gi|356537686|ref|XP_003537356.1| PREDICTED: protein misato homolog 1-like [Glycine max] Back     alignment and taxonomy information
>gi|449448342|ref|XP_004141925.1| PREDICTED: protein misato homolog 1-like [Cucumis sativus] gi|449528485|ref|XP_004171235.1| PREDICTED: protein misato homolog 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357483023|ref|XP_003611798.1| Misato-like protein [Medicago truncatula] gi|355513133|gb|AES94756.1| Misato-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|15235474|ref|NP_195436.1| uncharacterized protein [Arabidopsis thaliana] gi|4006861|emb|CAB16779.1| tubulin-like protein [Arabidopsis thaliana] gi|7270668|emb|CAB80385.1| tubulin-like protein [Arabidopsis thaliana] gi|71143064|gb|AAZ23923.1| At4g37190 [Arabidopsis thaliana] gi|194306666|gb|ACF41946.1| At4g37190 [Arabidopsis thaliana] gi|332661364|gb|AEE86764.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297798192|ref|XP_002866980.1| hypothetical protein ARALYDRAFT_912663 [Arabidopsis lyrata subsp. lyrata] gi|297312816|gb|EFH43239.1| hypothetical protein ARALYDRAFT_912663 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|110739205|dbj|BAF01517.1| tubulin-like protein [Arabidopsis thaliana] gi|222423876|dbj|BAH19902.1| AT4G37190 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query459
TAIR|locus:2115035 562 AT4G37190 [Arabidopsis thalian 0.967 0.790 0.662 6.3e-156
MGI|MGI:2385175 556 Msto1 "misato homolog 1 (Droso 0.810 0.669 0.334 4.7e-46
RGD|1306110 553 Msto1 "misato homolog 1 (Droso 0.806 0.669 0.316 7.6e-46
UNIPROTKB|Q9BUK6 570 MSTO1 "Protein misato homolog 0.825 0.664 0.312 2.4e-44
UNIPROTKB|Q5RF82 570 MSTO1 "Protein misato homolog 0.825 0.664 0.307 2.2e-43
UNIPROTKB|A5D9D4 572 MSTO1 "Protein misato homolog 0.825 0.662 0.302 1.5e-42
UNIPROTKB|Q4R681 569 MSTO1 "Protein misato homolog 0.825 0.666 0.305 1.5e-42
UNIPROTKB|F1RLM2570 MSTO1 "Uncharacterized protein 0.745 0.6 0.317 5.9e-41
UNIPROTKB|E2RSB9 574 MSTO1 "Uncharacterized protein 0.745 0.595 0.317 1.6e-40
UNIPROTKB|J9P0H7515 MSTO1 "Uncharacterized protein 0.745 0.664 0.317 1.6e-40
TAIR|locus:2115035 AT4G37190 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1520 (540.1 bits), Expect = 6.3e-156, P = 6.3e-156
 Identities = 306/462 (66%), Positives = 360/462 (77%)

Query:     1 MREIVTVQVGGFANFIGSHFWNFQDELLGLASDPNNDPVFRNQCLNMDVLYRTGETQQGV 60
             MREIVT+QVG FANF+GSHFWNFQDELLGLASDP +DP+FRN  L+MDVLYR+GETQQGV
Sbjct:     1 MREIVTIQVGEFANFVGSHFWNFQDELLGLASDPESDPIFRNHNLDMDVLYRSGETQQGV 60

Query:    61 LTYTPRLVSVGFQGSLGSMSSRGVLYNESSPGPSDV-VTWSGSVSTHASAPRKKNLFLQR 119
              TYTPRLVSV  +G+LG+MSSRG LYNE S   SD   TW G V T  S PRK+NLFLQ 
Sbjct:    61 ATYTPRLVSVNLKGALGTMSSRGTLYNEGSSSRSDSSATWFGDVDTQRSEPRKRNLFLQS 120

Query:   120 LYEEEQESFSMINGTSSGKSDSQREIQDKDIVELLDNHVEFWTDFSKVHYHPQSLYELGG 179
             LYEEE     ++     GK +  +EI+DKDIV  LD  VE WTDFSK HYHPQSLYEL G
Sbjct:   121 LYEEEH----VV-----GK-EKAKEIEDKDIVGCLDEEVECWTDFSKSHYHPQSLYELNG 170

Query:   180 LWMDPQDFDNYGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGFSAVAAD 239
             LWMD Q F+NYGIGKD FSE  RGEEIC+RLRFFVEE DHIQG +F+VDDSGGFSAVAAD
Sbjct:   171 LWMDSQAFNNYGIGKDVFSEASRGEEICDRLRFFVEECDHIQGIKFLVDDSGGFSAVAAD 230

Query:   240 LLENIADEYANTPVLLFSVRSPSSQMNLRSRKQTIFRELHDTVSFSRLASFSKLIVPVGL 299
              LEN+ADEY N PVLL+SVR+P SQM   S K+T+  +LHD +SFSRL+SF KL  P+GL
Sbjct:   231 FLENMADEYTNVPVLLYSVRTPMSQM---SSKKTVSNKLHDAISFSRLSSFCKLFTPIGL 287

Query:   300 PFLSESKASTFLRIENEKPYHCSAVYAAALHSATLPYRMEPVGPTADSFDVSGAVDFNGF 359
             P L+ SKAS FL + +EKPY  SAVYAAALHS+T+P+RM+P   ++DS +VS ++D N  
Sbjct:   288 PSLTGSKASKFLNLGDEKPYRSSAVYAAALHSSTIPFRMQPT--SSDSSEVSNSMDVNTL 345

Query:   360 VQMLAGQARQNTVVILDAAMPAPALNGKQHEQSLLGNLQPLTPEVSEDVEDLQAVESMII 419
             VQ+L G+ RQN V ILD+AMPAP L GKQ E +LL +LQ LTPEV+EDVED QAVESM I
Sbjct:   346 VQLLTGRGRQNIVAILDSAMPAPTLAGKQLENTLLTSLQALTPEVTEDVEDNQAVESMCI 405

Query:   420 HGALRSDGQRASISEVKETVNAIYGHAITR--PMFCHLSVAR 459
              GALRS+ + A +SEVK  V+A Y  A T+  P+FC+LSV+R
Sbjct:   406 LGALRSEDKEALVSEVKNAVDASYEQATTKGKPLFCNLSVSR 447
GO:0005739 "mitochondrion" evidence=ISM
GO:0043234 "protein complex" evidence=IEA
GO:0051258 "protein polymerization" evidence=IEA
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
MGI|MGI:2385175 Msto1 "misato homolog 1 (Drosophila)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1306110 Msto1 "misato homolog 1 (Drosophila)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q9BUK6 MSTO1 "Protein misato homolog 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5RF82 MSTO1 "Protein misato homolog 1" [Pongo pygmaeus (taxid:9600)] Back     alignment and assigned GO terms
UNIPROTKB|A5D9D4 MSTO1 "Protein misato homolog 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q4R681 MSTO1 "Protein misato homolog 1" [Macaca fascicularis (taxid:9541)] Back     alignment and assigned GO terms
UNIPROTKB|F1RLM2 MSTO1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E2RSB9 MSTO1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9P0H7 MSTO1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pm.C_LG_I001150
hypothetical protein (574 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query459
cd06060 493 cd06060, misato, Human Misato shows similarity wit 2e-61
pfam10644103 pfam10644, Misat_Myo_SegII, Misato Segment II myos 1e-30
cd00286328 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includ 3e-10
cd06059382 cd06059, Tubulin, The tubulin superfamily includes 8e-07
COG5023443 COG5023, COG5023, Tubulin [Cytoskeleton] 0.004
>gnl|CDD|100024 cd06060, misato, Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria Back     alignment and domain information 
 Score =  207 bits (528), Expect = 2e-61
 Identities = 119/441 (26%), Positives = 184/441 (41%), Gaps = 97/441 (21%)

Query: 2   REIVTVQVGGFANFIGSHFWNFQDELLGLASDPNNDPVFRNQCLNMDVLYRTGETQQGVL 61
           RE++T+Q+G +ANF+G+H+WN Q+       DP++        L+ DVLYR G T+QG +
Sbjct: 1   REVLTLQLGHYANFVGTHWWNLQEA--NFGYDPDSPASE----LDHDVLYREGRTRQGQV 54

Query: 62  TYTPRLVSVGFQGSLGSMSSRGVLYNESSPGPSDVVTWSGSVSTHASAPRKKNLFLQRLY 121
           TYTPRL+ +  +G+LG +   G L   +      V  WS  +      PR          
Sbjct: 55  TYTPRLLLLDLKGTLGHLPEEGSLKVYNLEA--SVNVWSDYLYARLH-PR---------- 101

Query: 122 EEEQESFSMINGTSSGKSDSQREIQDKDIVELLDNHVEFWTDFSKVHYHPQSLYELGGLW 181
                S ++IN  +                                              
Sbjct: 102 -----SINVINQYNHDG------------------------------------------- 113

Query: 182 MDPQDFDNYGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGFSAVAADLL 241
              Q F+ +G G+  + +    EE  +RLRF+VEE D++QGFQ + D   GFS V A  L
Sbjct: 114 -TSQPFEVFGQGESLWQDESFQEEFEDRLRFYVEECDYLQGFQVLCDLHDGFSGVGAKCL 172

Query: 242 ENIADEYANTPVLLFSVRSPSSQMNLRSRKQTIFRELHDTVSFSRLASFSKLIVPVGL-- 299
           E++ DEY     LLF    P    +  S K +I R L+  +  ++L+  S L VP+ L  
Sbjct: 173 EHLQDEY-GKASLLFPGLPPVIPPDASSDKNSI-RVLNTALGLAQLSEHSSLFVPLSLSG 230

Query: 300 ---PFLSESKASTFLRIENEKPYHCSAVYAAALHSATLPYRMEPVGPTADSFDVSGAVDF 356
                    +   +L  + E PYH SA+ A AL + TLPYR++     +    +   + F
Sbjct: 231 TLWRKPGPPRTFPYLNYDAELPYHTSALLATALDTLTLPYRLK--SSPSSLSGLCDDLSF 288

Query: 357 NGFVQMLAGQARQNTVVILDAAMPAPALNGKQHEQSLLGNLQ------PLTPEVSEDVED 410
           +G   + AG            A+P P + G Q     L           LTP   +    
Sbjct: 289 SGRKVVAAG-----------LALPFP-MVGGQDLIDFLDQSDGAVPWLQLTPGC-QIGTR 335

Query: 411 LQAVESMIIHGALRSDGQRAS 431
              ++S+++ G      +R  
Sbjct: 336 C-VIQSVVLRGIPEERLKRRL 355

It has a role in mitochondrial fusion and in mitochondrial distribution and morphology. Mutations in its Drosophila homolog (misato) lead to irregular chromosome segregation during mitosis. Deletion of the budding yeast homolog DML1 is lethal and unregulate expression of DML1 leads to mitochondrial dispersion and abnormalities in cell morphology. The Misato/DML1 protein family is conserved from yeast to human, but its exact function is still unknown. Length = 493
>gnl|CDD|220832 pfam10644, Misat_Myo_SegII, Misato Segment II myosin-like domain Back     alignment and domain information
>gnl|CDD|100014 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation Back     alignment and domain information
>gnl|CDD|100023 cd06059, Tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|227356 COG5023, COG5023, Tubulin [Cytoskeleton] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 459
cd06060493 misato Human Misato shows similarity with Tubulin/ 100.0
KOG2530483 consensus Members of tubulin/FtsZ family [Cytoskel 100.0
COG5023443 Tubulin [Cytoskeleton] 100.0
PLN00221450 tubulin alpha chain; Provisional 100.0
PTZ00335448 tubulin alpha chain; Provisional 100.0
cd02188431 gamma_tubulin Gamma-tubulin is a ubiquitous phylog 100.0
PLN00222454 tubulin gamma chain; Provisional 100.0
PTZ00010445 tubulin beta chain; Provisional 100.0
PTZ00387465 epsilon tubulin; Provisional 100.0
cd02186434 alpha_tubulin The tubulin superfamily includes fiv 100.0
cd02187425 beta_tubulin The tubulin superfamily includes five 100.0
PLN00220447 tubulin beta chain; Provisional 100.0
KOG1374448 consensus Gamma tubulin [Cytoskeleton] 100.0
cd02189446 delta_tubulin The tubulin superfamily includes fiv 100.0
cd02190379 epsilon_tubulin The tubulin superfamily includes f 100.0
KOG1376407 consensus Alpha tubulin [Cytoskeleton] 100.0
cd06059382 Tubulin The tubulin superfamily includes five dist 100.0
PF14881180 Tubulin_3: Tubulin domain 100.0
cd00286328 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin 100.0
PF10644115 Misat_Tub_SegII: Misato Segment II tubulin-like do 100.0
PF00091216 Tubulin: Tubulin/FtsZ family, GTPase domain; Inter 100.0
KOG1375369 consensus Beta tubulin [Cytoskeleton] 99.9
smart00864192 Tubulin Tubulin/FtsZ family, GTPase domain. This d 99.88
cd02202349 FtsZ_type2 FtsZ is a GTPase that is similar to the 99.81
cd02191303 FtsZ FtsZ is a GTPase that is similar to the eukar 99.6
TIGR00065349 ftsZ cell division protein FtsZ. This family consi 99.51
cd02201304 FtsZ_type1 FtsZ is a GTPase that is similar to the 99.48
PRK13018378 cell division protein FtsZ; Provisional 99.37
PRK09330384 cell division protein FtsZ; Validated 99.17
COG0206338 FtsZ Cell division GTPase [Cell division and chrom 93.97
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria Back     alignment and domain information 
Probab=100.00  E-value=2.1e-83  Score=672.40  Aligned_cols=371  Identities=32%  Similarity=0.534  Sum_probs=320.6

Q ss_pred             eeEEEEecCChhhHHHHHHHHHHHHHcCCCCCCCCCccccccCccccccccccccCCCcceeecceeEeccCCCCCcccc
Q 040160            2 REIVTVQVGGFANFIGSHFWNFQDELLGLASDPNNDPVFRNQCLNMDVLYRTGETQQGVLTYTPRLVSVGFQGSLGSMSS   81 (459)
Q Consensus         2 rEIITlQ~G~~~N~iG~hfWN~qe~~~~~~~d~~~~~~~~~~~~~~dvlfR~get~~g~~tytPR~l~vDl~~~lg~l~~   81 (459)
                      |||||||+||++|||||||||+||+++++.+++..      ..+|+||+||+|+|.+|++||+||+|+|||||++|+|++
T Consensus         1 rEIiTlq~G~~aN~vgtHfwN~Qe~~~~y~~~~~~------~~~~~dvl~r~g~~~~g~~tytPR~l~~Dlkg~~gsl~~   74 (493)
T cd06060           1 REVLTLQLGHYANFVGTHWWNLQEANFGYDPDSPA------SELDHDVLYREGRTRQGQVTYTPRLLLLDLKGTLGHLPE   74 (493)
T ss_pred             CceEEEeccCccccHhhhhhhhhhhhcCCCCCCcc------ccCCCceeeeccccCCCceeEcCcEEEEecCCccccccc
Confidence            89999999999999999999999999987766542      467999999999999999999999999999999999998


Q ss_pred             cccccCCCCCCCCCccccCCcccccccCCcchhhhhhhhhccccccccccccCCCCCCCccchhcchhhhhhcccccccc
Q 040160           82 RGVLYNESSPGPSDVVTWSGSVSTHASAPRKKNLFLQRLYEEEQESFSMINGTSSGKSDSQREIQDKDIVELLDNHVEFW  161 (459)
Q Consensus        82 ~g~ly~~~~~~~~~~~~w~g~v~~~~~~~~~~~~f~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~W  161 (459)
                      .|.|                       ..                                         ++|+++|++|
T Consensus        75 ~~~l-----------------------~~-----------------------------------------~~l~~~v~~W   90 (493)
T cd06060          75 EGSL-----------------------KV-----------------------------------------YNLEASVNVW   90 (493)
T ss_pred             ccCc-----------------------CC-----------------------------------------cccccchhhh
Confidence            6643                       00                                         1356788999


Q ss_pred             cccccccccCCcccccCCccCC--CCCCCcccccccccccCcchhhHHHHhhhhhhccCCCcceEEEecCCCCCCcchHH
Q 040160          162 TDFSKVHYHPQSLYELGGLWMD--PQDFDNYGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGFSAVAAD  239 (459)
Q Consensus       162 sDf~~~~~hPrS~~~l~~~~~~--~~~f~~y~~G~~~~~~~~~~e~~~d~IR~~vEeCD~lQGFqi~~d~~gGfSGl~s~  239 (459)
                      |||+|++|||||+++|++|+|+  ..+|+.|+.|.++|++.+..|+++|+||+++|+||+|||||+++|++|||||+|++
T Consensus        91 SDy~r~~yhPrS~~~L~~~~~~~~~~~fd~fg~G~~~f~~~~~~d~~~DrIR~~vEeCD~LQGFqi~~sl~gG~sG~gs~  170 (493)
T cd06060          91 SDYLYARLHPRSINVINQYNHDGTSQPFEVFGQGESLWQDESFQEEFEDRLRFYVEECDYLQGFQVLCDLHDGFSGVGAK  170 (493)
T ss_pred             hhcceeeeCCCceeeccchhcCCCCCCccccccChhhhcchhhHHHHHHHHHHHHHhCcccccEEEEEecCCcccchHHH
Confidence            9999999999999999999995  45799999999999998899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCeeEEEecCCCccccccchhhhHHHHhhhhhhhhhhcccccEEEEecCCcc-----CcccccccccCC
Q 040160          240 LLENIADEYANTPVLLFSVRSPSSQMNLRSRKQTIFRELHDTVSFSRLASFSKLIVPVGLPFL-----SESKASTFLRIE  314 (459)
Q Consensus       240 lle~L~DEYpk~~i~~~~v~p~~~~~~~~~~~~~~~~~~N~~Lsl~~L~e~sdl~~pl~n~~l-----~~~~~~~~l~~~  314 (459)
                      ++|+|+|||||+.++.|++.|......  ...+.++++||++|++++|.++||+++||..+..     ..+...+++.++
T Consensus       171 lLE~L~DEy~k~~i~~~~v~P~~~~~~--~~~~~vv~~yNs~LSl~~L~e~sdl~vPl~~~~~~w~~~~~p~~~~~l~~d  248 (493)
T cd06060         171 CLEHLQDEYGKASLLFPGLPPVIPPDA--SSDKNSIRVLNTALGLAQLSEHSSLFVPLSLSGTLWRKPGPPRTFPYLNYD  248 (493)
T ss_pred             HHHHHHHhcCccceeEEEeCCCccccc--ccchhHHHHHHHHHHHHHHHhcCCEEEEEecccccccCCCCCCCCcccccC
Confidence            999999999999999999988642110  1235789999999999999999999999997532     123457789999


Q ss_pred             CCCcchHHHHHHHHHhhcccCcccCCCCCCCCCCCCCCCcChHHHhhhccCCCchhhhhhhcccccCCCCCCCCchHhhh
Q 040160          315 NEKPYHCSAVYAAALHSATLPYRMEPVGPTADSFDVSGAVDFNGFVQMLAGQARQNTVVILDAAMPAPALNGKQHEQSLL  394 (459)
Q Consensus       315 ~~~~~~~saliA~~l~t~T~p~R~~~~g~~~~~~~~~~~~~l~~l~~~L~~~~r~n~~~~~~~~~P~~~~~~~~~~~~l~  394 (459)
                      ..+.||+|||+|++|+|+|+|||+++.+           .+|.+|+..|++.+||  |+++.++||+|+.++++++|+|.
T Consensus       249 ~~~~~htSAllA~aldT~TLp~Rl~~~~-----------~~m~~l~~~l~~~gRk--i~~~~~a~P~p~~~~~~l~d~L~  315 (493)
T cd06060         249 AELPYHTSALLATALDTLTLPYRLKSSP-----------SSLSGLCDDLSFSGRK--VVAAGLALPFPMVGGQDLIDFLD  315 (493)
T ss_pred             CCCchHHHHHHHHHHhhccccceeccCC-----------ccHHHHHHHhhhccch--hhhhccCCCCCCCCCCcHHHHHH
Confidence            9999999999999999999999998642           5799999999999999  99999999999999999999987


Q ss_pred             cc----C-CCCCCCCcccccchhhhhheeecccccCCCCc--------cCHHHHHHH---HHHHhccCCcCCcceeeccc
Q 040160          395 GN----L-QPLTPEVSEDVEDLQAVESMIIHGALRSDGQR--------ASISEVKET---VNAIYGHAITRPMFCHLSVA  458 (459)
Q Consensus       395 ~~----l-~~ltp~~~~~~~~~~~~~s~~~rG~~~~~~~~--------~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  458 (459)
                      +.    + ++|||++..  +..+++|+|++||++.+.-+|        .++.-.-++   |.+.|++..+++.|||++|.
T Consensus       316 ~~~~~~~~~~l~p~~~~--~~~~~~qsv~~rG~~~~~~~~~~~~~~~~~~~~~~c~s~~~~l~~y~~~~~~~s~~~~~~~  393 (493)
T cd06060         316 QSDGAVPWLQLTPGCQI--GTRCVIQSVVLRGIPEERLKRRLLAGDQARSPAYACSSVEEMLQLYLQCQYPGSMSALSVL  393 (493)
T ss_pred             hcCCCCCccccCCCCcc--CceeeeeeehhcCCChhhccccccccccccccchhcCCHHHHHHHHHHhccCCcchhheec
Confidence            43    2 689999876  577999999999998654432        222221122   56679999999999999986


Q ss_pred             C
Q 040160          459 R  459 (459)
Q Consensus       459 ~  459 (459)
                      +
T Consensus       394 ~  394 (493)
T cd06060         394 P  394 (493)
T ss_pred             C
Confidence            4

It has a role in mitochondrial fusion and in mitochondrial distribution and morphology. Mutations in its Drosophila homolog (misato) lead to irregular chromosome segregation during mitosis. Deletion of the budding yeast homolog DML1 is lethal and unregulate expression of DML1 leads to mitochondrial dispersion and abnormalities in cell morphology. The Misato/DML1 protein family is conserved from yeast to human, but its exact function is still unknown.
>KOG2530 consensus Members of tubulin/FtsZ family [Cytoskeleton] Back     alignment and domain information
>COG5023 Tubulin [Cytoskeleton] Back     alignment and domain information
>PLN00221 tubulin alpha chain; Provisional Back     alignment and domain information
>PTZ00335 tubulin alpha chain; Provisional Back     alignment and domain information
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily Back     alignment and domain information
>PLN00222 tubulin gamma chain; Provisional Back     alignment and domain information
>PTZ00010 tubulin beta chain; Provisional Back     alignment and domain information
>PTZ00387 epsilon tubulin; Provisional Back     alignment and domain information
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>PLN00220 tubulin beta chain; Provisional Back     alignment and domain information
>KOG1374 consensus Gamma tubulin [Cytoskeleton] Back     alignment and domain information
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>KOG1376 consensus Alpha tubulin [Cytoskeleton] Back     alignment and domain information
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>PF14881 Tubulin_3: Tubulin domain Back     alignment and domain information
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation Back     alignment and domain information
>PF10644 Misat_Tub_SegII: Misato Segment II tubulin-like domain; InterPro: IPR019605 The misato protein contains three distinct, conserved domains, segments I, II and III and is involved in the regulation of mitochondrial distribution and morphology [] Back     alignment and domain information
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins Back     alignment and domain information
>KOG1375 consensus Beta tubulin [Cytoskeleton] Back     alignment and domain information
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>TIGR00065 ftsZ cell division protein FtsZ Back     alignment and domain information
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>PRK13018 cell division protein FtsZ; Provisional Back     alignment and domain information
>PRK09330 cell division protein FtsZ; Validated Back     alignment and domain information
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query459
3ryc_A451 Tubulin alpha chain; alpha-tubulin, beta-tubulin, 1e-04
2btq_B426 Tubulin btubb; structural protein, cytoskeletal pr 3e-04
2bto_A473 Tubulin btuba; bacterial tubulin, polymerization, 3e-04
3ryc_B445 Tubulin beta chain; alpha-tubulin, beta-tubulin, G 4e-04
3cb2_A 475 Gamma-1-tubulin, tubulin gamma-1 chain; lattice, m 5e-04
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* 2p4n_A* 1jff_A* 2wbe_A* 3dco_A* ... Length = 451 Back     alignment and structure
 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 5/79 (6%)

Query: 189 NYGIGKDAFSEGFR-GEEICERLRFFVEESDHIQGFQFVVDDSGGF-SAVAADLLENIAD 246
           NY  G   ++ G    + + +R+R   ++   +QGF       GG  S   + L+E ++ 
Sbjct: 102 NYARGH--YTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSV 159

Query: 247 EYANTPVLLFSVRSPSSQM 265
           +Y     L FS+  P+ Q+
Sbjct: 160 DYGKKSKLEFSIY-PAPQV 177
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii} Length = 426 Back     alignment and structure
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein COM cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A* Length = 473 Back     alignment and structure
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B* 1z2b_B* 2xrp_A* 1tvk_B* 1tub_B* 1jff_B* 1ia0_B* 1ffx_B* 1sa0_B* 1sa1_B* ... Length = 445 Back     alignment and structure
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A* Length = 475 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query459
3ryc_A451 Tubulin alpha chain; alpha-tubulin, beta-tubulin, 100.0
3ryc_B445 Tubulin beta chain; alpha-tubulin, beta-tubulin, G 100.0
3cb2_A 475 Gamma-1-tubulin, tubulin gamma-1 chain; lattice, m 100.0
2btq_B426 Tubulin btubb; structural protein, cytoskeletal pr 100.0
2bto_A 473 Tubulin btuba; bacterial tubulin, polymerization, 100.0
1w5f_A353 Cell division protein FTSZ; complete proteome, GTP 99.9
2vap_A364 FTSZ, cell division protein FTSZ homolog 1; polyme 99.89
1ofu_A320 FTSZ, cell division protein FTSZ; bacterial cell d 99.89
2vaw_A394 FTSZ, cell division protein FTSZ; bacterial cell d 99.88
1rq2_A382 Cell division protein FTSZ; cell cycle, tubulin, G 99.88
2vxy_A382 FTSZ, cell division protein FTSZ; GTP-binding, nuc 99.87
2r75_1338 Cell division protein FTSZ; GTPase, tubulin-like, 99.84
3m89_A427 FTSZ/tubulin-related protein; partition, TUBZ, GTP 99.81
3v3t_A360 Cell division GTPase FTSZ, diverged; TUBZ, tubulin 99.77
4dxd_A396 Cell division protein FTSZ; rossmann fold, GTPase, 99.74
4ei7_A389 Plasmid replication protein REPX; GTP hydrolase, p 97.5
3r4v_A315 Putative uncharacterized protein; tubulin, unknown 93.14
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3ut5_A* 4eb6_A* 4f61_A* 4f6r_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* ... Back     alignment and structure
Probab=100.00  E-value=1.1e-63  Score=518.25  Aligned_cols=322  Identities=19%  Similarity=0.275  Sum_probs=277.4

Q ss_pred             CeeEEEEecCChhhHHHHHHHHHHHHHcCCCCCCCCCccc--cccCccccccccccccCCCcceeecceeEeccCCC-CC
Q 040160            1 MREIVTVQVGGFANFIGSHFWNFQDELLGLASDPNNDPVF--RNQCLNMDVLYRTGETQQGVLTYTPRLVSVGFQGS-LG   77 (459)
Q Consensus         1 MrEIITlQ~G~~~N~iG~hfWN~qe~~~~~~~d~~~~~~~--~~~~~~~dvlfR~get~~g~~tytPR~l~vDl~~~-lg   77 (459)
                      ||||||||+||||||||..||++.+.||++++||......  ...+...++||+  |+..|  +|+||+|+|||+|+ ++
T Consensus         1 mrEii~iqvGQcGnQIG~~~We~~~~EHgi~~~g~~~~~~~~~~~~~~~~~fF~--e~~~g--k~vPRavlvDlEp~vid   76 (451)
T 3ryc_A            1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFS--ETGAG--KHVPRAVFVDLEPTVID   76 (451)
T ss_dssp             CCCEEEEEEHHHHHHHHHHHHHHHHHHHTCCTTSCCCCC-------CGGGGTEE--ECTTS--CEEESEEEEESSSHHHH
T ss_pred             CceEEEEeccCchhHHHHHHHHHHHhhcCCCCCCCcCCcccccccccchhhhcc--cCCCC--ccccceeeecCCcchhh
Confidence            9999999999999999999999999999999998654321  112346889996  56666  89999999999999 77


Q ss_pred             cccccccccCCCCCCCCCccccCCcccccccCCcchhhhhhhhhccccccccccccCCCCCCCccchhcchhhhhhcccc
Q 040160           78 SMSSRGVLYNESSPGPSDVVTWSGSVSTHASAPRKKNLFLQRLYEEEQESFSMINGTSSGKSDSQREIQDKDIVELLDNH  157 (459)
Q Consensus        78 ~l~~~g~ly~~~~~~~~~~~~w~g~v~~~~~~~~~~~~f~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  157 (459)
                      +++.                           ++      +++||+++    +++.|++++||                  
T Consensus        77 ~v~~---------------------------g~------~~~lf~p~----~~i~gk~gAgN------------------  101 (451)
T 3ryc_A           77 EVRT---------------------------GT------YRQLFHPE----QLITGKEDAAN------------------  101 (451)
T ss_dssp             HHHH---------------------------ST------TTTTSCGG----GEEECSSCCTT------------------
T ss_pred             eeee---------------------------cc------cccccCHH----HeeeccccccC------------------
Confidence            7755                           34      67899999    99999999999                  


Q ss_pred             cccccccccccccCCcccccCCccCCCCCCCcccccccccccCcchhhHHHHhhhhhhccCCCcceEEEecCCCCC-Ccc
Q 040160          158 VEFWTDFSKVHYHPQSLYELGGLWMDPQDFDNYGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGF-SAV  236 (459)
Q Consensus       158 v~~WsDf~~~~~hPrS~~~l~~~~~~~~~f~~y~~G~~~~~~~~~~e~~~d~IR~~vEeCD~lQGFqi~~d~~gGf-SGl  236 (459)
                        +|   ++||                     |+.|+++      .|+++|+||+++|+||+||||+++|+++||| ||+
T Consensus       102 --Nw---A~G~---------------------yt~G~e~------~d~v~d~IRk~~E~cD~lqGF~i~hSlgGGTGSG~  149 (451)
T 3ryc_A          102 --NY---ARGH---------------------YTIGKEI------IDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGF  149 (451)
T ss_dssp             --CH---HHHH---------------------HTSHHHH------HHHHHHHHHHHHHTCSSCCEEEEEEESSSHHHHHH
T ss_pred             --CC---Ceee---------------------cccchHh------HHHHHHHHHHHHHcCCCccceEEEeccCCCCCccH
Confidence              99   9998                     9999999      9999999999999999999999999999999 999


Q ss_pred             hHHHHHHHHHHcCCCCeeEEEecCCCccccccchhhhHHHHhhhhhhhhhhcccccEEEEecCCccCcccccccccCCCC
Q 040160          237 AADLLENIADEYANTPVLLFSVRSPSSQMNLRSRKQTIFRELHDTVSFSRLASFSKLIVPVGLPFLSESKASTFLRIENE  316 (459)
Q Consensus       237 ~s~lle~L~DEYpk~~i~~~~v~p~~~~~~~~~~~~~~~~~~N~~Lsl~~L~e~sdl~~pl~n~~l~~~~~~~~l~~~~~  316 (459)
                      |+.++|.|+|||||+++++|+|+|++      ..++.++++||++|++++|.+++|++++++|++|++ +|.+.|.++.+
T Consensus       150 gs~lle~L~~ey~kk~~~~~~v~P~~------~~s~~vvepYNa~Lsl~~L~e~sD~~~~idNeaL~~-ic~~~l~i~~p  222 (451)
T 3ryc_A          150 TSLLMERLSVDYGKKSKLEFSIYPAP------QVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYD-ICRRNLDIERP  222 (451)
T ss_dssp             HHHHHHHHHHHTTTCEEEEEEEECCT------TTCCCTTHHHHHHHHHHHHGGGCSEEEEEEHHHHHH-HHHHHHCCSSC
T ss_pred             HHHHHHHHHHhcCcceEEEEEEecCC------CcccccceehHHHHHHHHHHhcccceeEeccHHHHH-HHHHhccCCCC
Confidence            99999999999999999999999987      567889999999999999999999999999999998 89999999999


Q ss_pred             CcchHHHHHHHHHhhcccCcccCCCCCCCCCCCCCCCcChHHHhhhccCCCchhhhhhhcccccCCCCCCCCchH----h
Q 040160          317 KPYHCSAVYAAALHSATLPYRMEPVGPTADSFDVSGAVDFNGFVQMLAGQARQNTVVILDAAMPAPALNGKQHEQ----S  392 (459)
Q Consensus       317 ~~~~~saliA~~l~t~T~p~R~~~~g~~~~~~~~~~~~~l~~l~~~L~~~~r~n~~~~~~~~~P~~~~~~~~~~~----~  392 (459)
                      ++.++|.|||++|+++|.++||++.          .++||.+|+++|+|+||.||+.+..  .|+....+..+..    .
T Consensus       223 ~y~~lN~lIa~~~s~iT~slRf~G~----------lN~Dl~~l~tnLVP~PrlHF~~~s~--aPl~s~~~~~~~~~sv~e  290 (451)
T 3ryc_A          223 TYTNLNRLISQIVSSITASLRFDGA----------LNVDLTEFQTNLVPYPRIHFPLATY--APVISAEKAYHEQLSVAE  290 (451)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCS----------SSCSHHHHHHHHCSSSSCCCCEEEE--ECCCBSSSCCCCCCCHHH
T ss_pred             CchhhHHHHHhcccccccccccCcc----------cccCHHHHhhccCCCCceeeecccc--CccccccccccccCCHHH
Confidence            9999999999999999999999954          7899999999999999999987665  5776655544432    2


Q ss_pred             hhccCCCCCCCCcc----cccchhhhhheeecccccCCCCccCHHHHHHHHHH
Q 040160          393 LLGNLQPLTPEVSE----DVEDLQAVESMIIHGALRSDGQRASISEVKETVNA  441 (459)
Q Consensus       393 l~~~l~~ltp~~~~----~~~~~~~~~s~~~rG~~~~~~~~~~~~~~~~~~~~  441 (459)
                      +.+.  .|.|...|    ...++|++-++++||.+.       ..+|.+++..
T Consensus       291 lt~~--~f~~~n~m~~~dp~~gky~a~~~~~RG~v~-------~~dv~~~i~~  334 (451)
T 3ryc_A          291 ITNA--CFEPANQMVKCDPRHGKYMACCLLYRGDVV-------PKDVNAAIAT  334 (451)
T ss_dssp             HHHH--TTCGGGBSSCCCGGGSCEEEEEEEEEESCC-------HHHHHHHHHH
T ss_pred             HHHH--HhccccceEecCCCCCchheehhhcccCCC-------HHHHHHHHHH
Confidence            3333  36665443    146899999999999764       5566666643
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3ut5_B* 4eb6_B* 4f6r_B* 4f61_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B* 1z2b_B* 2xrp_A* 4aqv_B* 4aqw_B* 4atu_A* ... Back     alignment and structure
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A* Back     alignment and structure
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii} Back     alignment and structure
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein COM cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A* Back     alignment and structure
>1w5f_A Cell division protein FTSZ; complete proteome, GTP-binding, multigene family, septation, tubulin, filament, Z-ring, GTPase, domain swapped; HET: G2P; 2.0A {Thermotoga maritima} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>2vap_A FTSZ, cell division protein FTSZ homolog 1; polymerization, tubulin homolog, GTPase, septation, cell cycle, GTP-binding; HET: GDP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.32.1.1 d.79.2.1 PDB: 1w59_A 1w58_1* 1w5a_A* 1w5b_A* 1fsz_A* 1w5e_A* Back     alignment and structure
>1ofu_A FTSZ, cell division protein FTSZ; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>2vaw_A FTSZ, cell division protein FTSZ; bacterial cell division protein, tubulin homolog, nucleotide-binding, GTPase, septation, cytoplasm; HET: GDP; 2.90A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>1rq2_A Cell division protein FTSZ; cell cycle, tubulin, GTPase, signaling protein; HET: CIT; 1.86A {Mycobacterium tuberculosis} SCOP: c.32.1.1 d.79.2.1 PDB: 1rlu_A* 1rq7_A* 2q1y_A* 2q1x_A* Back     alignment and structure
>2vxy_A FTSZ, cell division protein FTSZ; GTP-binding, nucleotide-binding, septation, cytoplasm, B.subtilis, cell cycle; HET: CIT; 1.7A {Bacillus subtilis} PDB: 2vam_A* 2rhj_A* 2rhh_A* 2rhl_A* 2rho_A* Back     alignment and structure
>2r75_1 Cell division protein FTSZ; GTPase, tubulin-like, inhibitor, cell cycle; HET: 01G; 1.40A {Aquifex aeolicus} PDB: 2r6r_1* Back     alignment and structure
>3m89_A FTSZ/tubulin-related protein; partition, TUBZ, GTP-binding, nucleotide-BIND structural protein; HET: GSP; 2.00A {Bacillus thuringiensis} PDB: 3m8k_A 2xka_A* 2xkb_A* Back     alignment and structure
>3v3t_A Cell division GTPase FTSZ, diverged; TUBZ, tubulin/FTSZ related, rossmann fold, GTP bindi structural protein; 2.30A {Clostridium botulinum C} Back     alignment and structure
>4dxd_A Cell division protein FTSZ; rossmann fold, GTPase, GTP binding, cell cycle-inhibitor COM; HET: GDP 9PC; 2.01A {Staphylococcus aureus} PDB: 3vo8_A* Back     alignment and structure
>4ei7_A Plasmid replication protein REPX; GTP hydrolase, plasmid segregation; HET: GDP; 1.90A {Bacillus cereus} PDB: 4ei8_A 4ei9_A* Back     alignment and structure
>3r4v_A Putative uncharacterized protein; tubulin, unknown function; HET: GDP; 1.67A {Pseudomonas phage 201phi2-1} PDB: 3rb8_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 459
d1tubb1243 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus 2e-04
d1tuba1245 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus 3e-04
d2btoa1244 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthec 0.001
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 243 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Tubulin beta-subunit
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 40.7 bits (95), Expect = 2e-04
 Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 6/71 (8%)

Query: 1  MREIVTVQVGGFANFIGSHFWN-FQDELLGLASDPNNDPVFRNQCLNMDVLYRTGETQQG 59
          MREIV +Q G   N IG+ FW    DE  G+    +       Q   ++V Y      + 
Sbjct: 1  MREIVHIQAGQCGNQIGAKFWEVISDE-HGIDPTGSYHGDSDLQLERINVYYNEAAGNK- 58

Query: 60 VLTYTPRLVSV 70
             Y PR + V
Sbjct: 59 ---YVPRAILV 66
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 245 Back     information, alignment and structure
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Length = 244 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query459
d1tubb1243 Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 982 100.0
d1tuba1245 Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 98 100.0
d2btoa1244 Tubulin alpha-subunit {Prosthecobacter dejongeii [ 100.0
d2vapa1209 Cell-division protein FtsZ {Archaeon Methanococcus 97.27
d1w5fa1194 Cell-division protein FtsZ {Thermotoga maritima [T 97.16
d1ofua1198 Cell-division protein FtsZ {Pseudomonas aeruginosa 97.07
d1rq2a1198 Cell-division protein FtsZ {Mycobacterium tubercul 97.0
d2btoa2180 Tubulin alpha-subunit {Prosthecobacter dejongeii [ 96.21
d1tubb2184 Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 982 96.16
d1tuba2195 Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 98 96.05
d1pdoa_129 IIA domain of mannose transporter, IIA-Man {Escher 82.07
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Tubulin beta-subunit
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=3.1e-57  Score=434.67  Aligned_cols=241  Identities=24%  Similarity=0.370  Sum_probs=217.0

Q ss_pred             CeeEEEEecCChhhHHHHHHHHHHHHHcCCCCCCCCCccccccCccccccccccccCCCcceeecceeEeccCCC-CCcc
Q 040160            1 MREIVTVQVGGFANFIGSHFWNFQDELLGLASDPNNDPVFRNQCLNMDVLYRTGETQQGVLTYTPRLVSVGFQGS-LGSM   79 (459)
Q Consensus         1 MrEIITlQ~G~~~N~iG~hfWN~qe~~~~~~~d~~~~~~~~~~~~~~dvlfR~get~~g~~tytPR~l~vDl~~~-lg~l   79 (459)
                      ||||||||+||||||||..||++.+.||++.+++.............+++|.  ++..+  +|+||+|+||++++ ++.+
T Consensus         1 MrEiI~iqvGQcGnQIG~~fw~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~f~--e~~~~--~~~pRav~iD~Ep~vi~~i   76 (243)
T d1tubb1           1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYN--EAAGN--KYVPRAILVDLEPGTMDSV   76 (243)
T ss_dssp             CCEEEEEECHHHHHHHHHHHGGGTTTSCCSSCCCSSSSCCCCSSCCSSCCSS--TTTTS--TTCCCCEECCSSSHHHHHH
T ss_pred             CCcEEEEeccChHHHHHHHHHHHHHHHcCCCCCCCCCCCcccchhccccccc--cCCCC--ccccceeEecCCcchhhhh
Confidence            9999999999999999999999999999998887654332233446778996  45555  89999999999999 7777


Q ss_pred             cccccccCCCCCCCCCccccCCcccccccCCcchhhhhhhhhccccccccccccCCCCCCCccchhcchhhhhhcccccc
Q 040160           80 SSRGVLYNESSPGPSDVVTWSGSVSTHASAPRKKNLFLQRLYEEEQESFSMINGTSSGKSDSQREIQDKDIVELLDNHVE  159 (459)
Q Consensus        80 ~~~g~ly~~~~~~~~~~~~w~g~v~~~~~~~~~~~~f~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~  159 (459)
                      ++                           .+      .+.||+++    +++.+++++||                    
T Consensus        77 ~~---------------------------~~------~~~~f~~~----~~i~~~~gagN--------------------   99 (243)
T d1tubb1          77 RS---------------------------GP------FGQIFRPD----NFVFGQSGAGN--------------------   99 (243)
T ss_dssp             SS---------------------------SS------SCCCCSSS----CCCCTTCCCCS--------------------
T ss_pred             cc---------------------------Cc------cccccCcc----ceEEcccCccc--------------------
Confidence            54                           22      35567777    88899999998                    


Q ss_pred             cccccccccccCCcccccCCccCCCCCCCcccccccccccCcchhhHHHHhhhhhhccCCCcceEEEecCCCCC-CcchH
Q 040160          160 FWTDFSKVHYHPQSLYELGGLWMDPQDFDNYGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGF-SAVAA  238 (459)
Q Consensus       160 ~WsDf~~~~~hPrS~~~l~~~~~~~~~f~~y~~G~~~~~~~~~~e~~~d~IR~~vEeCD~lQGFqi~~d~~gGf-SGl~s  238 (459)
                      +|   ++|+                     |..|.++      .|+++|+|||++|+||+||||+++||++||| ||+||
T Consensus       100 Nw---A~Gy---------------------~~~G~~~------~d~i~d~iRk~~E~cD~l~gf~~~hSl~GGTGSGlGs  149 (243)
T d1tubb1         100 NW---AKGH---------------------YTEGAEL------VDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGT  149 (243)
T ss_dssp             ST---HHHH---------------------TSHHHHH------HHHHHHHHHHHHHSSSCEEEEEEECCTTCSTTTTTHH
T ss_pred             ce---eeee---------------------eccCHHH------HHHHHHHHHHHHHhCCCcCceEEEeeccCccccchHH
Confidence            99   9997                     8899999      9999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHcCCCCeeEEEecCCCccccccchhhhHHHHhhhhhhhhhhcccccEEEEecCCccCcccccccccCCCCCc
Q 040160          239 DLLENIADEYANTPVLLFSVRSPSSQMNLRSRKQTIFRELHDTVSFSRLASFSKLIVPVGLPFLSESKASTFLRIENEKP  318 (459)
Q Consensus       239 ~lle~L~DEYpk~~i~~~~v~p~~~~~~~~~~~~~~~~~~N~~Lsl~~L~e~sdl~~pl~n~~l~~~~~~~~l~~~~~~~  318 (459)
                      +++|.|+|+||++.+++++|+|+.      ..+++++++||++|+|++|.+++|++++++|++|++ +|.+.++++.+++
T Consensus       150 ~l~e~L~d~yp~~~~~~~~V~P~~------~~~~vvvqpYNtvLsl~~L~~~ad~v~~~dN~al~~-i~~~~~~~~~~s~  222 (243)
T d1tubb1         150 LLISKIREEYPDRIMNTFSVVPSP------KVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYD-ICFRTLKLTTPTY  222 (243)
T ss_dssp             HHHHHHHHHCSSSCEEECCCCCCT------TCSCSSTTHHHHHHHHHHHSSSEEEECCCCHHHHHH-HTTTTSCCSSCCH
T ss_pred             HHHHHHhhhcccceEEEEeecCCc------ccCcccccchHHHHhHHHHHhhCCeEEEeeHHHHHH-HHHHhcCCCCCCH
Confidence            999999999999999999999986      568899999999999999999999999999999998 8999999999999


Q ss_pred             chHHHHHHHHHhhcccCcccC
Q 040160          319 YHCSAVYAAALHSATLPYRME  339 (459)
Q Consensus       319 ~~~saliA~~l~t~T~p~R~~  339 (459)
                      .++|.+||++|+++|.++||+
T Consensus       223 ~~~N~~Ia~~ls~~T~s~RFP  243 (243)
T d1tubb1         223 GDLNHLVSATMSGVTTCLRFP  243 (243)
T ss_dssp             HHHHHHHHHHHHHHHTBTTBS
T ss_pred             HHHHHHHHHHHHhhhhcccCC
Confidence            999999999999999999996
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Back     information, alignment and structure
>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2btoa2 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Back     information, alignment and structure
>d1tubb2 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1pdoa_ c.54.1.1 (A:) IIA domain of mannose transporter, IIA-Man {Escherichia coli [TaxId: 562]} Back     information, alignment and structure