Citrus Sinensis ID: 040188

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------
Protein Sequence
APTQANFPVADAAALAVVPSKGNHSRGVRQTPSGKFAAEIRDPAKKGARCWLETFATAEQAALANVRAAFKFRGRRALLNFPNFGAPERVRIKSKRSLQEPSSSTDGAGRGPQRGGE
Secondary Structure (PSIPRED)
cccccccccHHHHHHHcccccccccccccccccccEEEEcccccccccEEEEcccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccEccEEEcccccEEEEEccccccccEEEEcccccHHHHHHHHHHHHHHHHcccEEEcccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
aptqanfpvadAAALavvpskgnhsrgvrqtpsgkfaaeirDPAKKGARCWLETFATAEQAALANVRAAFKFRGrrallnfpnfgapervrikskrslqepssstdgagrgpqrgge
Flexible Loop (DISEMBL)
aptqanfpvadaaalavvpskgnhsrgvrqtpsgkfaaeirDPAKKGARCWLETFATAEQAALANVRAAFKFRGRRAllnfpnfgapervrikskrslqepssstdgagrgpqrgge
Low Complexity Region (SEG)
APTQANFPvadaaalavvPSKGNHSRGVRQTPSGKFAAEIRDPAKKGARCWLETFATAEQAALANVRAAFKFRGRRALLNFPNFGAPERVRIKSKRSLQEPSSSTDGAGRGPQRGGE
Disordered region (IsUnstruct)
*********************************************KGARCWLETFATAEQAALANVRAAFKFRGRRALLNFPNFG********************************
Disordered Region (DISOPRED)
***************************VRQTPSGKFAAEIRDPAKKGARCWLETFATAEQAALANVRAAFKFRGRRALLNFPNF*********************************
Disordered Region (DISEMBL)
APTQANFPVADAAALAVVP***********TPSGKFAAEIRDPAKKGARCWLETFATAEQAALANVRAAFKFRGRRALLNFPNFGAPERVRI*************************
Disordered Region (DISPRO)
**********************NHSRGVRQTPSGKFAAEIRDPAKKGARCWLETFATAEQAALANVRAAFKFRGRRALLNFPNF*********************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
APTQANFPVADAAALAVVPSKGNHSRGVRQTPSGKFAAEIRDPAKKGARCWLETFATAEQAALANVRAAFKFRGRRALLNFPNFGAPERVRIKSKRSLQEPSSSTDGAGRGPQRGGE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	117	2.2.26 [Sep-21-2011]
Q40479	233	Ethylene-responsive trans	N/A	no	0.829	0.416	0.594	4e-24
O80337	268	Ethylene-responsive trans	yes	no	0.658	0.287	0.7	2e-22
Q9LW50	237	Ethylene-responsive trans	N/A	no	0.752	0.371	0.608	2e-22
O80338	243	Ethylene-responsive trans	no	no	0.717	0.345	0.623	1e-21
Q84XB3	244	Ethylene-responsive trans	N/A	no	0.666	0.319	0.629	6e-21
Q40476	236	Ethylene-responsive trans	N/A	no	0.760	0.377	0.526	3e-19
Q8L9K1	226	Ethylene-responsive trans	no	no	0.888	0.460	0.509	3e-18
Q40478	291	Ethylene-responsive trans	N/A	no	0.547	0.219	0.640	1e-16
Q9LW48	282	Ethylene-responsive trans	N/A	no	0.581	0.241	0.588	1e-16
O04681	161	Pathogenesis-related gene	N/A	no	0.726	0.527	0.546	4e-16

>sp|Q40479|ERF2_TOBAC Ethylene-responsive transcription factor 2 OS=Nicotiana tabacum GN=ERF2 PE=2 SV=1

 Score =  110 bits (274), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 60/101 (59%), Positives = 71/101 (70%), Gaps = 4/101 (3%)

Query: 8   PVADAAALAVVPSKGNHSRGVRQTPSGKFAAEIRDPAKKGARCWLETFATAEQAALANVR 67
           P     A AVVP KG H RGVRQ P GKFAAEIRDPAK GAR WL T+ TAE+AALA  +
Sbjct: 83  PAETTTAQAVVP-KGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDK 141

Query: 68  AAFKFRGRRALLNFPN---FGAPERVRIKSKRSLQEPSSST 105
           AA++ RG +ALLNFP+      PE VR+ +KR   EP+SS+
Sbjct: 142 AAYRMRGSKALLNFPHRIGLNEPEPVRLTAKRRSPEPASSS 182

Acts as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate.
Nicotiana tabacum (taxid: 4097)

>sp|O80337|EF100_ARATH Ethylene-responsive transcription factor 1A OS=Arabidopsis thaliana GN=ERF1A PE=1 SV=2

 Score =  104 bits (260), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 56/80 (70%), Positives = 59/80 (73%), Gaps = 3/80 (3%)

Query: 16  AVVPSKGNHSRGVRQTPSGKFAAEIRDPAKKGARCWLETFATAEQAALANVRAAFKFRGR 75
           AV  +KG H RGVRQ P GKFAAEIRDPAK GAR WL TF TAE AALA  RAAF+ RG 
Sbjct: 139 AVTAAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGS 198

Query: 76  RALLNFP---NFGAPERVRI 92
           RALLNFP   N G P+ VRI
Sbjct: 199 RALLNFPLRVNSGEPDPVRI 218

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LW50|ERF2_NICSY Ethylene-responsive transcription factor 2 OS=Nicotiana sylvestris GN=ERF2 PE=2 SV=1

 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 56/92 (60%), Positives = 64/92 (69%), Gaps = 4/92 (4%)

Query: 8   PVADAAALAVVPSKGNHSRGVRQTPSGKFAAEIRDPAKKGARCWLETFATAEQAALANVR 67
           P     A AVVP KG H RGVRQ P GKFAAEIRDPAK GAR WL T+ TAE+AALA  +
Sbjct: 87  PAETTTAQAVVP-KGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDK 145

Query: 68  AAFKFRGRRALLNFPN---FGAPERVRIKSKR 96
           AA++ RG +ALLNFP+      PE VR+  KR
Sbjct: 146 AAYRMRGSKALLNFPHRIGLNEPEPVRLTVKR 177

Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator.

Nicotiana sylvestris (taxid: 4096)

>sp|O80338|EF101_ARATH Ethylene-responsive transcription factor 2 OS=Arabidopsis thaliana GN=ERF2 PE=2 SV=1

 Score =  102 bits (253), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 58/93 (62%), Positives = 61/93 (65%), Gaps = 9/93 (9%)

Query: 7   FPVADAAALAVVPSKGNHSRGVRQTPSGKFAAEIRDPAKKGARCWLETFATAEQAALANV 66
            PV + A       K  H RGVRQ P GKFAAEIRDPAK GAR WL TF TAE AALA  
Sbjct: 105 IPVTETAV------KAKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYD 158

Query: 67  RAAFKFRGRRALLNFP---NFGAPERVRIKSKR 96
            AAF+ RG RALLNFP   N G P+ VRI SKR
Sbjct: 159 IAAFRMRGSRALLNFPLRVNSGEPDPVRITSKR 191

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Involved in disease resistance pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84XB3|ERF1_SOLLC Ethylene-responsive transcription factor 1 OS=Solanum lycopersicum GN=ERF1 PE=2 SV=1

 Score = 99.4 bits (246), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 51/81 (62%), Positives = 59/81 (72%), Gaps = 3/81 (3%)

Query: 21  KGNHSRGVRQTPSGKFAAEIRDPAKKGARCWLETFATAEQAALANVRAAFKFRGRRALLN 80
           KG H RGVRQ P GKFAAEIRDPAK GAR WL T+ +AE+AALA  +AAF+ RG +ALLN
Sbjct: 103 KGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYESAEEAALAYGKAAFRMRGTKALLN 162

Query: 81  FPN---FGAPERVRIKSKRSL 98
           FP+      PE VR+  KR L
Sbjct: 163 FPHRIGLNEPEPVRVTVKRRL 183

Involved in the regulation of gene expression during fruit ripening, by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Probably acts as a transcriptional activator and may be involved in disease resistance pathways.

Solanum lycopersicum (taxid: 4081)

>sp|Q40476|ERF1_TOBAC Ethylene-responsive transcription factor 1 OS=Nicotiana tabacum GN=ERF1 PE=2 SV=1

 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 49/93 (52%), Positives = 65/93 (69%), Gaps = 4/93 (4%)

Query: 21  KGNHSRGVRQTPSGKFAAEIRDPAKKGARCWLETFATAEQAALANVRAAFKFRGRRALLN 80
           +G H RGVR+ P GKFAAEIRDPAK GAR WL T+ T E+AA+A  +AA++ RG +A LN
Sbjct: 101 RGRHYRGVRRRPWGKFAAEIRDPAKNGARVWLGTYETDEEAAIAYDKAAYRMRGSKAHLN 160

Query: 81  FPN---FGAPERVRIKSKRSLQ-EPSSSTDGAG 109
           FP+      PE VR+ +KR    EP+SS++ + 
Sbjct: 161 FPHRIGLNEPEPVRVTAKRRASPEPASSSENSS 193

Probably acts as a transcriptional activator and may be involved in disease resistance pathways (By similarity). Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade and to be influenced by methyl-jasmonate.

Nicotiana tabacum (taxid: 4097)

>sp|Q8L9K1|ERF99_ARATH Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana GN=ERF13 PE=2 SV=2

 Score = 90.1 bits (222), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 55/108 (50%), Positives = 67/108 (62%), Gaps = 4/108 (3%)

Query: 1   APTQANFPVADAAALAVVP-SKGNHSRGVRQTPSGKFAAEIRDPAKKGARCWLETFATAE 59
           +P + N P A  A+ +  P  KG   RGVR+ P GKFAAEIRDP K GAR WL T+ T E
Sbjct: 67  SPAEENKPPATKASGSHAPRQKGMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETPE 126

Query: 60  QAALANVRAAFKFRGRRALLNFPNFGAP---ERVRIKSKRSLQEPSSS 104
            AA+A  RAAF+ RG +A LNFP+       E VRI+ +R   EPS S
Sbjct: 127 DAAVAYDRAAFQLRGSKAKLNFPHLIGSCKYEPVRIRPRRRSPEPSVS 174

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40478|ERF5_TOBAC Ethylene-responsive transcription factor 5 OS=Nicotiana tabacum GN=ERF5 PE=2 SV=1

 Score = 85.5 bits (210), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 41/64 (64%), Positives = 48/64 (75%)

Query: 19  PSKGNHSRGVRQTPSGKFAAEIRDPAKKGARCWLETFATAEQAALANVRAAFKFRGRRAL 78
           P++  H RGVRQ P GKFAAEIRDP +KG R WL TF TA +AA A  RAAFK RG +A+
Sbjct: 139 PTEKKHYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAFKLRGSKAI 198

Query: 79  LNFP 82
           +NFP
Sbjct: 199 VNFP 202

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate.

Nicotiana tabacum (taxid: 4097)

>sp|Q9LW48|ERF5_NICSY Ethylene-responsive transcription factor 5 OS=Nicotiana sylvestris GN=ERF5 PE=2 SV=1

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 40/68 (58%), Positives = 50/68 (73%)

Query: 15  LAVVPSKGNHSRGVRQTPSGKFAAEIRDPAKKGARCWLETFATAEQAALANVRAAFKFRG 74
           + + P++  H RGVRQ P GKFAAEIRDP +KG R WL TF TA +AA A  RAA+K RG
Sbjct: 128 VELAPTEKKHYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAYKLRG 187

Query: 75  RRALLNFP 82
            +A++NFP
Sbjct: 188 SKAIVNFP 195

Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator.

Nicotiana sylvestris (taxid: 4096)

>sp|O04681|PTI5_SOLLC Pathogenesis-related genes transcriptional activator PTI5 OS=Solanum lycopersicum GN=PTI5 PE=2 SV=1

 Score = 83.2 bits (204), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 47/86 (54%), Positives = 57/86 (66%), Gaps = 1/86 (1%)

Query: 22  GNHSRGVRQTPSGKFAAEIRDPAKKGARCWLETFATAEQAALANVRAAFKFRGRRALLNF 81
           G   RGVR+ P GK+AAEIRD A+ GAR WL TF TAE+AALA  RAAF+ RG +ALLNF
Sbjct: 56  GKKYRGVRRRPWGKYAAEIRDSARHGARVWLGTFETAEEAALAYDRAAFRMRGAKALLNF 115

Query: 82  PNFGAPERVRIKSKRSLQEPSSSTDG 107
           P+      V +  K SL   S +T+ 
Sbjct: 116 PSEIVNASVSV-DKLSLCSNSYTTNN 140

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates plants defense genes. Can confer resistance to Pseudomonas syringae tomato by potentiating the transcription of a set of pathogenesis related genes, downstream to a defense signaling pathway involving PTO and PRF, but probably independent of ethylene, jasmonate and salicylic acid.

Solanum lycopersicum (taxid: 4081)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	117
224074209	280	AP2/ERF domain-containing transcription	0.880	0.367	0.642	2e-27
356540552	240	PREDICTED: ethylene-responsive transcrip	0.871	0.425	0.638	1e-26
224113541	283	AP2/ERF domain-containing transcription	0.897	0.371	0.621	2e-25
213950351	255	AP2/EREBP transcription factor [Gossypiu	0.760	0.349	0.673	2e-24
449469359	250	PREDICTED: ethylene-responsive transcrip	0.752	0.352	0.692	2e-24
151301818	255	ethylene responsive element binding prot	0.760	0.349	0.673	3e-24
356510693	255	PREDICTED: ethylene-responsive transcrip	0.692	0.317	0.714	3e-24
59800343	179	ethylene-responsive element binding prot	0.760	0.497	0.673	3e-24
222427679	282	ethylene responsive transcription factor	0.692	0.287	0.714	7e-24
316986186	287	ethylene responsive factor, partial [Pru	0.820	0.334	0.616	1e-23

>gi|224074209|ref|XP_002304302.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222841734|gb|EEE79281.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  125 bits (315), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 70/109 (64%), Positives = 77/109 (70%), Gaps = 6/109 (5%)

Query: 1   APTQANFPVADAAALAVVPSKGNHSRGVRQTPSGKFAAEIRDPAKKGARCWLETFATAEQ 60
           +P     PVA+ A   V+PSKG H RGVRQ P GKFAAEIRDPAK GAR WL TF TAE 
Sbjct: 130 SPPSTAVPVAEPA---VLPSKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAED 186

Query: 61  AALANVRAAFKFRGRRALLNFP---NFGAPERVRIKSKRSLQEPSSSTD 106
           AALA  RAA++ RG RALLNFP   N G P+ VR+ SKRS  EPSSS D
Sbjct: 187 AALAYDRAAYRMRGSRALLNFPLRVNSGEPDPVRVTSKRSSPEPSSSVD 235

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540552|ref|XP_003538752.1| PREDICTED: ethylene-responsive transcription factor 1A-like [Glycine max]

 Score =  123 bits (309), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 67/105 (63%), Positives = 75/105 (71%), Gaps = 3/105 (2%)

Query: 5   ANFPVADAAALAVVPSKGNHSRGVRQTPSGKFAAEIRDPAKKGARCWLETFATAEQAALA 64
            N PV    A AVVP+KG H RGVRQ P GKFAAEIRDPAK GAR WL TF TAE AALA
Sbjct: 123 CNPPVVQGPAPAVVPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALA 182

Query: 65  NVRAAFKFRGRRALLNFP---NFGAPERVRIKSKRSLQEPSSSTD 106
             RAA++ RG RALLNFP   N G PE VR+ +KR+  EP SS++
Sbjct: 183 YDRAAYRMRGSRALLNFPLRINSGEPEPVRVTAKRASAEPCSSSE 227

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113541|ref|XP_002332558.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|224144214|ref|XP_002336120.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222835042|gb|EEE73491.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222873207|gb|EEF10338.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/111 (62%), Positives = 77/111 (69%), Gaps = 6/111 (5%)

Query: 1   APTQANFPVADAAALAVVPSKGNHSRGVRQTPSGKFAAEIRDPAKKGARCWLETFATAEQ 60
           +P +   P+A+ A   VVPSKG H RGVRQ P GKFAAEIRDPAK GAR WL TF TAE 
Sbjct: 134 SPPRTEAPIAEPA---VVPSKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAED 190

Query: 61  AALANVRAAFKFRGRRALLNFP---NFGAPERVRIKSKRSLQEPSSSTDGA 108
           AALA  RAA++ RG RALLNFP   N G P  VR+ SKRS  E SSS + A
Sbjct: 191 AALAYDRAAYRMRGSRALLNFPLRVNSGEPAPVRVTSKRSSPERSSSVESA 241

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|213950351|gb|ACJ54440.1| AP2/EREBP transcription factor [Gossypium hirsutum]

 Score =  115 bits (289), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 62/92 (67%), Positives = 69/92 (75%), Gaps = 3/92 (3%)

Query: 9   VADAAALAVVPSKGNHSRGVRQTPSGKFAAEIRDPAKKGARCWLETFATAEQAALANVRA 68
           VA+AA   VVP+KG H RGVRQ P GKFAAEIRDPAK GAR WL TF TAE AALA  +A
Sbjct: 123 VANAAVPTVVPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDKA 182

Query: 69  AFKFRGRRALLNFP---NFGAPERVRIKSKRS 97
           A++ RG RALLNFP   N G P+ VRI SKR+
Sbjct: 183 AYRMRGSRALLNFPLRVNSGEPDPVRITSKRA 214

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469359|ref|XP_004152388.1| PREDICTED: ethylene-responsive transcription factor 2-like [Cucumis sativus]

 Score =  115 bits (289), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 63/91 (69%), Positives = 67/91 (73%), Gaps = 3/91 (3%)

Query: 17  VVPSKGNHSRGVRQTPSGKFAAEIRDPAKKGARCWLETFATAEQAALANVRAAFKFRGRR 76
           VVP KG H RGVRQ P GKFAAEIRDPAK GAR WL T+ TAE AALA  RAA++ RG R
Sbjct: 124 VVPEKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEDAALAYDRAAYRMRGSR 183

Query: 77  ALLNFP---NFGAPERVRIKSKRSLQEPSSS 104
           ALLNFP   N G PE VR+ SKRS  E SSS
Sbjct: 184 ALLNFPLRVNSGEPEPVRVTSKRSSPEVSSS 214

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|151301818|gb|ABN50365.2| ethylene responsive element binding protein 1 [Gossypium barbadense]

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 62/92 (67%), Positives = 69/92 (75%), Gaps = 3/92 (3%)

Query: 9   VADAAALAVVPSKGNHSRGVRQTPSGKFAAEIRDPAKKGARCWLETFATAEQAALANVRA 68
           VA+AA   VVP+KG H RGVRQ P GKFAAEIRDPAK GAR WL TF TAE AALA  +A
Sbjct: 123 VANAAVPTVVPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDKA 182

Query: 69  AFKFRGRRALLNFP---NFGAPERVRIKSKRS 97
           A++ RG RALLNFP   N G P+ VRI SKR+
Sbjct: 183 AYRMRGSRALLNFPLRVNSGEPDPVRITSKRA 214

Source: Gossypium barbadense

Species: Gossypium barbadense

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510693|ref|XP_003524070.1| PREDICTED: ethylene-responsive transcription factor 1A-like [Glycine max]

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 60/84 (71%), Positives = 65/84 (77%), Gaps = 3/84 (3%)

Query: 17  VVPSKGNHSRGVRQTPSGKFAAEIRDPAKKGARCWLETFATAEQAALANVRAAFKFRGRR 76
           VVP+KG H RGVRQ P GKFAAEIRDPAK GAR WL TF TAE AALA  RAA++ RG R
Sbjct: 130 VVPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSR 189

Query: 77  ALLNFP---NFGAPERVRIKSKRS 97
           ALLNFP   N G P+ VR+KSKRS
Sbjct: 190 ALLNFPLRVNSGEPDPVRVKSKRS 213

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|59800343|gb|AAX07459.1| ethylene-responsive element binding protein ERF5 [Gossypium hirsutum]

 Score =  115 bits (288), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 62/92 (67%), Positives = 69/92 (75%), Gaps = 3/92 (3%)

Query: 9   VADAAALAVVPSKGNHSRGVRQTPSGKFAAEIRDPAKKGARCWLETFATAEQAALANVRA 68
           VA+AA   VVP+KG H RGVRQ P GKFAAEIRDPAK GAR WL TF TAE AALA  +A
Sbjct: 47  VANAAVPTVVPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDKA 106

Query: 69  AFKFRGRRALLNFP---NFGAPERVRIKSKRS 97
           A++ RG RALLNFP   N G P+ VRI SKR+
Sbjct: 107 AYRMRGSRALLNFPLRVNSGEPDPVRITSKRA 138

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222427679|gb|ACM49849.1| ethylene responsive transcription factor 1a [Prunus salicina]

 Score =  114 bits (285), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 60/84 (71%), Positives = 64/84 (76%), Gaps = 3/84 (3%)

Query: 16  AVVPSKGNHSRGVRQTPSGKFAAEIRDPAKKGARCWLETFATAEQAALANVRAAFKFRGR 75
           AVVP+KG H RGVRQ P GKFAAEIRDPAK GAR WL TF TAE AALA  RAA++ RG 
Sbjct: 140 AVVPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGS 199

Query: 76  RALLNFP---NFGAPERVRIKSKR 96
           RALLNFP   N G PE VR+ SKR
Sbjct: 200 RALLNFPLRVNSGEPEPVRVTSKR 223

Source: Prunus salicina

Species: Prunus salicina

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|316986186|gb|ADU76349.1| ethylene responsive factor, partial [Prunus persica]

 Score =  113 bits (282), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 66/107 (61%), Positives = 71/107 (66%), Gaps = 11/107 (10%)

Query: 1   APTQANFPVADA--------AALAVVPSKGNHSRGVRQTPSGKFAAEIRDPAKKGARCWL 52
           AP Q   PV  A        A  AVVP+KG H RGVRQ P GKFAAEIRDPAK GAR WL
Sbjct: 123 APVQPARPVQPARPVQQPSQAGPAVVPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWL 182

Query: 53  ETFATAEQAALANVRAAFKFRGRRALLNFP---NFGAPERVRIKSKR 96
            TF TAE AALA  RAA++ RG RALLNFP   N G P+ VR+ SKR
Sbjct: 183 GTFETAEDAALAYDRAAYRMRGSRALLNFPLRVNSGEPDPVRVTSKR 229

Source: Prunus persica

Species: Prunus persica

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	117
TAIR|locus:2129116	268	ERF-1 "ethylene responsive ele	0.752	0.328	0.684	1.2e-24
TAIR|locus:2171514	243	ERF2 "ethylene responsive elem	0.726	0.349	0.670	7.8e-23
UNIPROTKB|Q5MFV1	303	BIERF3 "BTH-induced ERF transc	0.726	0.280	0.571	3.1e-19
TAIR|locus:2055002	226	ERF13 "ethylene-responsive ele	0.888	0.460	0.5	3.1e-19
TAIR|locus:2086213	139	TDR1 "Transcriptional Regulato	0.709	0.597	0.571	5.3e-17
TAIR|locus:2151576	201	AT5G61590 [Arabidopsis thalian	0.700	0.407	0.528	4.7e-16
TAIR|locus:2183861	212	Rap2.6L "related to AP2 6l" [A	0.495	0.273	0.711	7.7e-16
TAIR|locus:2171529	300	ERF5 "ethylene responsive elem	0.504	0.196	0.661	2.3e-15
TAIR|locus:2156171	248	AT5G61890 [Arabidopsis thalian	0.555	0.262	0.633	2.6e-15
TAIR|locus:2176187	221	AT5G51190 [Arabidopsis thalian	0.504	0.266	0.644	4.2e-15

TAIR|locus:2129116 ERF-1 "ethylene responsive element binding factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 63/92 (68%), Positives = 68/92 (73%)

Query:    20 SKGNHSRGVRQTPSGKFAAEIRDPAKKGARCWLETFATAEQAALANVRAAFKFRGRRALL 79
             +KG H RGVRQ P GKFAAEIRDPAK GAR WL TF TAE AALA  RAAF+ RG RALL
Sbjct:   143 AKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALL 202

Query:    80 NFP---NFGAPERVRIKSKRSLQEPSSSTDGA 108
             NFP   N G P+ VRIKSKRS    SS+ +GA
Sbjct:   203 NFPLRVNSGEPDPVRIKSKRS-SFSSSNENGA 233

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0005643 "nuclear pore" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2171514 ERF2 "ethylene responsive element binding factor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 59/88 (67%), Positives = 62/88 (70%)

Query:    21 KGNHSRGVRQTPSGKFAAEIRDPAKKGARCWLETFATAEQAALANVRAAFKFRGRRALLN 80
             K  H RGVRQ P GKFAAEIRDPAK GAR WL TF TAE AALA   AAF+ RG RALLN
Sbjct:   113 KAKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDIAAFRMRGSRALLN 172

Query:    81 FP---NFGAPERVRIKSKRSLQEPSSST 105
             FP   N G P+ VRI SKRS    SSS+
Sbjct:   173 FPLRVNSGEPDPVRITSKRSSSSSSSSS 200

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA;TAS

GO:0005634 "nucleus" evidence=ISM;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP;IDA

GO:0009864 "induced systemic resistance, jasmonic acid mediated signaling pathway" evidence=IMP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

UNIPROTKB|Q5MFV1 BIERF3 "BTH-induced ERF transcriptional factor 3" [Oryza sativa Indica Group (taxid:39946)]

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 52/91 (57%), Positives = 61/91 (67%)

Query:    20 SKGNHSRGVRQTPSGKFAAEIRDPAKKGARCWLETFATAEQAALANVRAAFKFRGRRALL 79
             S+G H RGVRQ P GKFAAEIRDPAK GAR WL TF +AE+AA+A  RAA++ RG RALL
Sbjct:   144 SRGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFDSAEEAAVAYDRAAYRMRGSRALL 203

Query:    80 NFP-NFG-----APERVRIKSKRSLQEPSSS 104
             NFP   G     A       +KR   +P+SS
Sbjct:   204 NFPLRIGSEIAAAAAAAAAGNKRPYPDPASS 234

GO:0009620 "response to fungus" evidence=IC

TAIR|locus:2055002 ERF13 "ethylene-responsive element binding factor 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 54/108 (50%), Positives = 65/108 (60%)

Query:     1 APTQANFPXXXXXXXXXXP-SKGNHSRGVRQTPSGKFAAEIRDPAKKGARCWLETFATAE 59
             +P + N P          P  KG   RGVR+ P GKFAAEIRDP K GAR WL T+ T E
Sbjct:    67 SPAEENKPPATKASGSHAPRQKGMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETPE 126

Query:    60 QAALANVRAAFKFRGRRALLNFPNF-GAP--ERVRIKSKRSLQEPSSS 104
              AA+A  RAAF+ RG +A LNFP+  G+   E VRI+ +R   EPS S
Sbjct:   127 DAAVAYDRAAFQLRGSKAKLNFPHLIGSCKYEPVRIRPRRRSPEPSVS 174

GO:0003677 "DNA binding" evidence=IEA;ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

TAIR|locus:2086213 TDR1 "Transcriptional Regulator of Defense Response 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 48/84 (57%), Positives = 56/84 (66%)

Query:    26 RGVRQTPSGKFAAEIRDPAKKGARCWLETFATAEQAALANVRAAFKFRGRRALLNFPNFG 85
             RGVR+ P GKFAAEIRDP++ GAR WL TF TAE+AA A  RAAF  RG  A+LNFPN  
Sbjct:    21 RGVRRRPWGKFAAEIRDPSRNGARLWLGTFETAEEAARAYDRAAFNLRGHLAILNFPNEY 80

Query:    86 APERVRIKSKRSLQEPSSSTDGAG 109
              P R+   S R     SSS+  +G
Sbjct:    81 YP-RMDDYSLRPPYASSSSSSSSG 103

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

TAIR|locus:2151576 AT5G61590 [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 46/87 (52%), Positives = 57/87 (65%)

Query:    24 HSRGVRQTPSGKFAAEIRDPAKKGARCWLETFATAEQAALANVRAAFKFRGRRALLNFP- 82
             H RGVR+ P GKFAAEIRDPAKKG+R WL TF +   AA A   AAFK RGR+A+LNFP 
Sbjct:   106 HYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDIDAARAYDYAAFKLRGRKAVLNFPL 165

Query:    83 ---NFGAPERVRIKSKRS-LQEPSSST 105
                 + AP     K +R+ + +P  +T
Sbjct:   166 DAGKYDAPVNSCRKRRRTDVPQPQGTT 192

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009414 "response to water deprivation" evidence=IEP

TAIR|locus:2183861 Rap2.6L "related to AP2 6l" [Arabidopsis thaliana (taxid:3702)]

 Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
 Identities = 42/59 (71%), Positives = 46/59 (77%)

Query:    24 HSRGVRQTPSGKFAAEIRDPAKKGARCWLETFATAEQAALANVRAAFKFRGRRALLNFP 82
             H RGVRQ P GK+AAEIRDP KK AR WL TF TAE+AALA  RAA KF+G +A LNFP
Sbjct:    38 HYRGVRQRPWGKWAAEIRDP-KKAARVWLGTFETAEEAALAYDRAALKFKGTKAKLNFP 95

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009651 "response to salt stress" evidence=IMP

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0071497 "cellular response to freezing" evidence=IEP

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010260 "organ senescence" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0046482 "para-aminobenzoic acid metabolic process" evidence=RCA

TAIR|locus:2171529 ERF5 "ethylene responsive element binding factor 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 194 (73.4 bits), Expect = 2.3e-15, P = 2.3e-15
 Identities = 39/59 (66%), Positives = 45/59 (76%)

Query:    24 HSRGVRQTPSGKFAAEIRDPAKKGARCWLETFATAEQAALANVRAAFKFRGRRALLNFP 82
             H RGVRQ P GKFAAEIRDP K+G+R WL TF TA +AA A   AAF+ RG +A+LNFP
Sbjct:   155 HYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAARAYDEAAFRLRGSKAILNFP 213

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0009409 "response to cold" evidence=IEP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2156171 AT5G61890 [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 45/71 (63%), Positives = 50/71 (70%)

Query:    24 HSRGVRQTPSGKFAAEIRDPAKKGARCWLETFATAEQAALANVRAAFKFRGRRALLNFPN 83
             H RGVRQ P GK+AAEIRDP KK AR WL TF TAE AALA   AA KF+G +A LNFP 
Sbjct:    89 HYRGVRQRPWGKWAAEIRDP-KKAARVWLGTFETAESAALAYDEAALKFKGSKAKLNFP- 146

Query:    84 FGAPERVRIKS 94
                 ERV++ S
Sbjct:   147 ----ERVQLGS 153

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0050832 "defense response to fungus" evidence=IEP

GO:0006865 "amino acid transport" evidence=RCA

TAIR|locus:2176187 AT5G51190 [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 38/59 (64%), Positives = 44/59 (74%)

Query:    24 HSRGVRQTPSGKFAAEIRDPAKKGARCWLETFATAEQAALANVRAAFKFRGRRALLNFP 82
             H RGVR+ P GK+AAEIRDP KKG R WL TF TA +AA    +AAFK RG +A+LNFP
Sbjct:    71 HYRGVRRRPWGKYAAEIRDPNKKGVRVWLGTFDTAMEAARGYDKAAFKLRGSKAILNFP 129

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: ERF16 AP2/ERF domain-containing transcription factor (242 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	117
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	2e-21
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	5e-20
pfam00847	53	pfam00847, AP2, AP2 domain	4e-05

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score = 80.0 bits (198), Expect = 2e-21
 Identities = 42/58 (72%), Positives = 44/58 (75%), Gaps = 1/58 (1%)

Query: 26 RGVRQTPSGKFAAEIRDPAKKGARCWLETFATAEQAALANVRAAFKFRGRRALLNFPN 83
          RGVRQ P GK+ AEIRDP  KG R WL TF TAE+AA A  RAAFKFRGR A LNFPN
Sbjct: 3  RGVRQRPWGKWVAEIRDP-SKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPN 59

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score = 76.5 bits (189), Expect = 5e-20
 Identities = 37/58 (63%), Positives = 41/58 (70%), Gaps = 1/58 (1%)

Query: 26 RGVRQTPSGKFAAEIRDPAKKGARCWLETFATAEQAALANVRAAFKFRGRRALLNFPN 83
          RGVRQ P GK+ AEIRDP   G R WL TF TAE+AA A  RAA K RG  A+LNFP+
Sbjct: 4  RGVRQRPWGKWVAEIRDP-SGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPD 60

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 38.0 bits (89), Expect = 4e-05
 Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 26 RGVRQTPS-GKFAAEIRDPAKKGARC-WLETFATAEQAALANVRAAFKFRG 74
          +GVR     G++ AEIRDP +K  +   L TF T E+AA A + A  K RG
Sbjct: 4  KGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGT-EEAARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	117
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.88
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.87
PHA00280	121	putative NHN endonuclease	99.7
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.36
PF14657	46	Integrase_AP2: AP2-like DNA-binding integrase doma	86.41
PHA02601	333	int integrase; Provisional	81.47

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.88  E-value=9.6e-23  Score=129.10  Aligned_cols=61  Identities=61%  Similarity=0.912  Sum_probs=56.8

Q ss_pred             CceeeeEECCCCcEEEEEeCCCCCCceeccCCCCCHHHHHHHHHHHHHHhcCCCCcCCCCCC
Q 040188           23 NHSRGVRQTPSGKFAAEIRDPAKKGARCWLETFATAEQAALANVRAAFKFRGRRALLNFPNF   84 (117)
Q Consensus        23 S~yrGV~~~~~GkW~A~I~~~~~~gk~~~LGtF~t~EeAA~AYD~aa~~~~G~~A~~NFp~~   84 (117)
                      |+|+||+++++|+|+|+|+++. .|+++|||+|+|+|||+.|||.++++++|.++.+|||++
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~-~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPS-GGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCC-CCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            6899999988999999999764 269999999999999999999999999999999999975

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.87  E-value=6.4e-22  Score=126.79  Aligned_cols=63  Identities=67%  Similarity=0.935  Sum_probs=57.9

Q ss_pred             ceeeeEECCCCcEEEEEeCCCCCCceeccCCCCCHHHHHHHHHHHHHHhcCCCCcCCCCCCCCC
Q 040188           24 HSRGVRQTPSGKFAAEIRDPAKKGARCWLETFATAEQAALANVRAAFKFRGRRALLNFPNFGAP   87 (117)
Q Consensus        24 ~yrGV~~~~~GkW~A~I~~~~~~gk~~~LGtF~t~EeAA~AYD~aa~~~~G~~A~~NFp~~~~~   87 (117)
                      +|+||+++++|+|+|+|+++. +|+.+|||+|+|+|||+.|||.++++++|.++.+|||.+.+.
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~-~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~   63 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPS-KGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD   63 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecC-CCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence            589999888999999999864 469999999999999999999999999999999999987653

>PHA00280 putative NHN endonuclease

Probab=99.70  E-value=3.5e-17  Score=117.73  Aligned_cols=70  Identities=11%  Similarity=0.122  Sum_probs=63.0

Q ss_pred             CCCchhhhhhccCCCCCCCceeeeEECC-CCcEEEEEeCCCCCCceeccCCCCCHHHHHHHHHHHHHHhcCCCCc
Q 040188            5 ANFPVADAAALAVVPSKGNHSRGVRQTP-SGKFAAEIRDPAKKGARCWLETFATAEQAALANVRAAFKFRGRRAL   78 (117)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~S~yrGV~~~~-~GkW~A~I~~~~~~gk~~~LGtF~t~EeAA~AYD~aa~~~~G~~A~   78 (117)
                      ..+..+|+.|.+..+.++|+|+||+|.+ .|||+|+|++   +||+++||.|+++|+|+.||+ ++.+|||+||.
T Consensus        49 ~~T~~eN~~N~~~~~~N~SG~kGV~~~k~~~kw~A~I~~---~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~  119 (121)
T PHA00280         49 LALPKENSWNMKTPKSNTSGLKGLSWSKEREMWRGTVTA---EGKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR  119 (121)
T ss_pred             hcCHHHHhcccCCCCCCCCCCCeeEEecCCCeEEEEEEE---CCEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence            3467899999999999999999999886 7999999994   589999999999999999997 67889999875

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.36  E-value=1.5e-12  Score=80.37  Aligned_cols=53  Identities=26%  Similarity=0.378  Sum_probs=46.0

Q ss_pred             CceeeeEECC-CCcEEEEEeCCCCCC--ceeccCCCCCHHHHHHHHHHHHHHhcCC
Q 040188           23 NHSRGVRQTP-SGKFAAEIRDPAKKG--ARCWLETFATAEQAALANVRAAFKFRGR   75 (117)
Q Consensus        23 S~yrGV~~~~-~GkW~A~I~~~~~~g--k~~~LGtF~t~EeAA~AYD~aa~~~~G~   75 (117)
                      |+|+||++++ .++|+|+|++...+|  ++++||.|+++|||+++++.+++.++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            6899999886 799999999843333  8999999999999999999999999874

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain

Probab=86.41  E-value=2.5  Score=24.83  Aligned_cols=39  Identities=13%  Similarity=0.102  Sum_probs=28.9

Q ss_pred             cEEEEEe-CCCCCC--ceeccCCCCCHHHHHHHHHHHHHHhc
Q 040188           35 KFAAEIR-DPAKKG--ARCWLETFATAEQAALANVRAAFKFR   73 (117)
Q Consensus        35 kW~A~I~-~~~~~g--k~~~LGtF~t~EeAA~AYD~aa~~~~   73 (117)
                      +|...|. .....|  ++++-+-|.|..||..+...+...+.
T Consensus         1 ~w~~~v~g~~~~~Gkrk~~~k~GF~TkkeA~~~~~~~~~~~~   42 (46)
T PF14657_consen    1 TWYYRVYGYDDETGKRKQKTKRGFKTKKEAEKALAKIEAELE   42 (46)
T ss_pred             CEEEEEEEEECCCCCEEEEEcCCCCcHHHHHHHHHHHHHHHH
Confidence            5788883 333344  56778889999999999988777663

>PHA02601 int integrase; Provisional

Probab=81.47  E-value=3  Score=32.73  Aligned_cols=45  Identities=27%  Similarity=0.330  Sum_probs=30.4

Q ss_pred             eeEECCCCcEEEEEeCCCCCCceeccCCCCCHHHHHHHHHHHHHHh
Q 040188           27 GVRQTPSGKFAAEIRDPAKKGARCWLETFATAEQAALANVRAAFKF   72 (117)
Q Consensus        27 GV~~~~~GkW~A~I~~~~~~gk~~~LGtF~t~EeAA~AYD~aa~~~   72 (117)
                      +|++.++|+|+++|......|+++. .+|.|..||....+.....+
T Consensus         2 ~~~~~~~g~w~~~~~~~~~~g~r~~-~~f~tk~eA~~~~~~~~~~~   46 (333)
T PHA02601          2 AVRKLKDGKWLCEIYPNGRDGKRIR-KRFATKGEALAFENYTMAEV   46 (333)
T ss_pred             ceEEcCCCCEEEEEEECCCCCchhh-hhhcCHHHHHHHHHHHHHhc
Confidence            4666668999999985433466665 36999999876655544433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	117
2gcc_A	70	Solution Structure Of The Gcc-Box Binding Domain, N		7e-21
1gcc_A	63	Solution Nmr Structure Of The Complex Of Gcc-Box Bi		2e-19

>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, Minimized Mean Structure Length = 70

Iteration: 1
 Score = 95.5 bits (236), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 48/63 (76%), Positives = 50/63 (79%)
Query: 20 SKGNHSRGVRQTPSGKFAAEIRDPAKKGARCWLETFATAEQAALANVRAAFKFRGRRALL 79
          +KG H RGVRQ P GKFAAEIRDPAK GAR WL TF TAE AALA  RAAF+ RG RALL
Sbjct: 1  AKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALL 60
Query: 80 NFP 82
          NFP
Sbjct: 61 NFP 63

>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding Domain Of Aterf1 And Gcc-Box Dna, Minimized Average Structure Length = 63

Iteration: 1
 Score = 90.9 bits (224), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 46/59 (77%), Positives = 47/59 (79%)
Query: 24 HSRGVRQTPSGKFAAEIRDPAKKGARCWLETFATAEQAALANVRAAFKFRGRRALLNFP 82
          H RGVRQ P GKFAAEIRDPAK GAR WL TF TAE AALA  RAAF+ RG RALLNFP
Sbjct: 2  HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	117
1gcc_A	63	Ethylene responsive element binding factor 1; tran	1e-25

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score = 90.5 bits (225), Expect = 1e-25
 Identities = 46/60 (76%), Positives = 47/60 (78%)

Query: 24 HSRGVRQTPSGKFAAEIRDPAKKGARCWLETFATAEQAALANVRAAFKFRGRRALLNFPN 83
          H RGVRQ P GKFAAEIRDPAK GAR WL TF TAE AALA  RAAF+ RG RALLNFP 
Sbjct: 2  HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL 61

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	117
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.94
1u3e_M	174	HNH homing endonuclease; HNH catalytic motif, heli	92.26
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	86.46

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.94  E-value=2.2e-27  Score=152.15  Aligned_cols=61  Identities=75%  Similarity=1.086  Sum_probs=58.0

Q ss_pred             ceeeeEECCCCcEEEEEeCCCCCCceeccCCCCCHHHHHHHHHHHHHHhcCCCCcCCCCCC
Q 040188           24 HSRGVRQTPSGKFAAEIRDPAKKGARCWLETFATAEQAALANVRAAFKFRGRRALLNFPNF   84 (117)
Q Consensus        24 ~yrGV~~~~~GkW~A~I~~~~~~gk~~~LGtF~t~EeAA~AYD~aa~~~~G~~A~~NFp~~   84 (117)
                      +|+||+++++|||+|+|+++.++|+++|||+|+|+||||+|||.++++++|.++++|||++
T Consensus         2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~   62 (63)
T 1gcc_A            2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence            6999999889999999999876789999999999999999999999999999999999975

>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1

Probab=92.26  E-value=0.0046  Score=44.76  Aligned_cols=54  Identities=6%  Similarity=-0.124  Sum_probs=34.3

Q ss_pred             chhhhhhccCCCCCCCceeeeEECCCCcEEEEEeCCCCCCceeccCCCCCHHHHHHHHH
Q 040188            8 PVADAAALAVVPSKGNHSRGVRQTPSGKFAAEIRDPAKKGARCWLETFATAEQAALANV   66 (117)
Q Consensus         8 ~~~~~~~~~~~~~~~S~yrGV~~~~~GkW~A~I~~~~~~gk~~~LGtF~t~EeAA~AYD   66 (117)
                      ..+|+.+........ .++||.+...++|.+.|...    +.++||.|+|.+||+++|.
T Consensus        93 ~~eN~~~~~~~~~~~-~~~g~~~~~~~k~~~vi~~~----~~~~~~~f~s~~eAa~~~G  146 (174)
T 1u3e_M           93 QKINVENQMSRGTLN-VSKAQQIAKIKNQKPIIVIS----PDGIEKEYPSTKCACEELG  146 (174)
T ss_dssp             HHHHHHHHHHHTCCC-CHHHHHHHHHHTCCCEEEEC----TTSCEEEESCHHHHHHHHT
T ss_pred             HHHHhhcccccCccc-ceeeeeeccCCCCceEEEEc----CCceEEeeCCHHHHHHHHC
Confidence            344555443333222 24676542246788888853    4577999999999999965

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=86.46  E-value=0.49  Score=30.83  Aligned_cols=24  Identities=17%  Similarity=0.029  Sum_probs=20.3

Q ss_pred             CCCCceeeeEECC-CCcEEEEEeCC
Q 040188           20 SKGNHSRGVRQTP-SGKFAAEIRDP   43 (117)
Q Consensus        20 ~~~S~yrGV~~~~-~GkW~A~I~~~   43 (117)
                      ...|+|.||+|.+ .+.|.|.-.+.
T Consensus         3 ~~~Sg~pGVsw~kR~~~WlA~W~e~   27 (77)
T 3igm_B            3 HMSSGYPGVSWNKRMCAWLAFFYDG   27 (77)
T ss_dssp             -CCSSSTTEEEETTTTEEEEEEEET
T ss_pred             CCCCCCCcEEeecCCceEEEEEecC
Confidence            3679999999987 79999998864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	117
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	1e-21

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 79.4 bits (196), Expect = 1e-21
 Identities = 46/59 (77%), Positives = 47/59 (79%)

Query: 24 HSRGVRQTPSGKFAAEIRDPAKKGARCWLETFATAEQAALANVRAAFKFRGRRALLNFP 82
          H RGVRQ P GKFAAEIRDPAK GAR WL TF TAE AALA  RAAF+ RG RALLNFP
Sbjct: 2  HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	117
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.93

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.93  E-value=1.6e-27  Score=151.58  Aligned_cols=60  Identities=77%  Similarity=1.122  Sum_probs=57.1

Q ss_pred             ceeeeEECCCCcEEEEEeCCCCCCceeccCCCCCHHHHHHHHHHHHHHhcCCCCcCCCCC
Q 040188           24 HSRGVRQTPSGKFAAEIRDPAKKGARCWLETFATAEQAALANVRAAFKFRGRRALLNFPN   83 (117)
Q Consensus        24 ~yrGV~~~~~GkW~A~I~~~~~~gk~~~LGtF~t~EeAA~AYD~aa~~~~G~~A~~NFp~   83 (117)
                      +||||+++++|||.|+|+++..+++++|||+|+|+||||+|||.++++++|.++.+|||.
T Consensus         2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~   61 (63)
T d1gcca_           2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL   61 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCT
T ss_pred             CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCc
Confidence            699999988999999999887778999999999999999999999999999999999996