Citrus Sinensis ID: 040197


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410------
MEYILGCKGFIILLGVTFVISYEFAKGEIISGQKSSYIGRKVNHLNSNGNVVKSIQSEDGDIIDCVCIYKQPAFDHPALKDHIIQMTPTYDPNGKTVTTGSADTETSTTVMASQIWRKNGSCPEGTIPVRRIHNSNSFEGYGRKQPSFYHRVKQLNDIKQPNLQQPNHSKAILLTVGYMFSGAKGDIKVWNPFVESDDEYSTSRVSLQSGPYYDFESIESGWAVNPRVYGDRKTRLFVYWTADASKTTGCFDVTCPGFVQVSNEIALGAAIYPISNPNGLPYQITIYLFKDPDTGNWWMQYGEKINVGYWPPKLFSLLPSGAESAEWGGEVYSSKLENPPHTATAMGNGHFPDYISGNSGSVKRIRILDNSRTLKFPEWVYSYTDQYNCYGVDYVGDYIVDPEFYFGGPGRNHLCP
ccccccHHHHHHHHHHHHHHHHcEEcccccccccHHHHHHHHHHccccccccEEEEcccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccEEEccccccccccccccccccccccccccccccccccccccEEEEEEEccEEEEEEEEEEEEccccccccccEEEEEEEEcccccccccEEEcccccccccccccEEEEEEEEEccccccccccccccEEEEEccccccccEEccccccccccEEEEEEEEEccccccEEEEcccccccccccccccccccccccEEEEEEEEEccccccccccccccccccccccccccEEEEEEEEEEEcccccccccccEEcccccccEEEEEccccccccEEEEEccccccccc
ccHHHcHHHHHHHHHHHHHHHHHHHcHHHccHHHHHHHHHHHHHHccccccEEEEEcccccEEEEEEccccccccccccccccEEccccccccccccccccccccccccccEEEEEccccccccccEEEEEccHHHHHHHcccHccccccccccccccccccccccccEEEEEEEcccEEEEEEEEEEEccccccccccccHHEEEEEccccccccEEEEEEEEcHHHccccccEEEEEEEcccccccccEccccccEEEEcccEEEccEEcccccccccEEEEEEEEEEccccccEEEEEcccEEEEcccHHHHHHHHccccEEEEccEEEccccccccccccccccccccccccccEEEEEEEEEEEcccccccHHHcEEEccccccEEEEccccccccEEEEEcccccccccc
MEYILGCKGFIILLGVTFVISYEFakgeiisgqkssyigRKVNHLNSNGNVVksiqsedgdiidcvciykqpafdhpalkdhiiqmtptydpngktvttgsadtetsTTVMASQIwrkngscpegtipvrrihnsnsfegygrkqpsfYHRVKQlndikqpnlqqpnhskaILLTVGYmfsgakgdikvwnpfvesddeystsrvslqsgpyydfesiesgwavnprvygdrktRLFVYWTadaskttgcfdvtcpgfvqVSNEIALGaaiypisnpnglpyqITIYlfkdpdtgnwwmqygekinvgywppklfsllpsgaesaewggevyssklenpphtatamgnghfpdyisgnsgsvkririldnsrtlkfpewvysytdqyncygvdyvgdyivdpefyfggpgrnhlcp
MEYILGCKGFIILLGVTFVISYEFAKGEIISGQKSSYIGRKVNHLNSNGNVVKSIQSEDGDIIDCVCIYKQPAFDHPALKDHIIQMTPTYDPNGKTVTTGSADTETSTTVmasqiwrkngscpegtipvrRIHNSNSFEGYGRKQPSFYHRVKQLNDIKQPNLQQPNHSKAILLTVGYMFSGAKGDIKVWNPFVESDDEYSTSRVSLQSGPYYDfesiesgwavnprvygdRKTRLFVYWTADASKTTGCFDVTCPGFVQVSNEIALGAAIYPISNPNGLPYQITIYLFKDPDTGNWWMQYGEKINVGYWPPKLFSLLPSGAESAEWGGEVYSSKLENPPHTATAMGNGHFPDYISGNSGSVKRIRILDNSRTLKFPEWVYSYTDQYNCYGVDYVGDYIVDPEFYFGGPGRNHLCP
MEYILGCKGFIILLGVTFVISYEFAKGEIISGQKSSYIGRKVNHLNSNGNVVKSIQSEDGDIIDCVCIYKQPAFDHPALKDHIIQMTPTYDPNGKtvttgsadtetsttvMASQIWRKNGSCPEGTIPVRRIHNSNSFEGYGRKQPSFYHRVKQLNDIKQPNLQQPNHSKAILLTVGYMFSGAKGDIKVWNPFVESDDEYSTSRVSLQSGPYYDFESIESGWAVNPRVYGDRKTRLFVYWTADASKTTGCFDVTCPGFVQVSNEIALGAAIYPISNPNGLPYQITIYLFKDPDTGNWWMQYGEKINVGYWPPKLFSLLPSGAESAEWGGEVYSSKLENPPHTATAMGNGHFPDYISGNSGSVKRIRILDNSRTLKFPEWVYSYTDQYNCYGVDYVGDYIVDPEFYFGGPGRNHLCP
**YILGCKGFIILLGVTFVISYEFAKGEIISGQKSSYIGRKVNHLNSNGNVVKSIQSEDGDIIDCVCIYKQPAFDHPALKDHIIQMTPTY**********************SQIWRKNGSCPEGTIPVRRIH**************FYHRVK****************KAILLTVGYMFSGAKGDIKVWNPFVESDDEYSTSRVSLQSGPYYDFESIESGWAVNPRVYGDRKTRLFVYWTADASKTTGCFDVTCPGFVQVSNEIALGAAIYPISNPNGLPYQITIYLFKDPDTGNWWMQYGEKINVGYWPPKLFSLLPSGAE*AEWGGEV******************HFPDYISGNSGSVKRIRILDNSRTLKFPEWVYSYTDQYNCYGVDYVGDYIVDPEFYFGG********
******CKGFIILLGVTFVISYEF***********************NGNVVKSIQSEDGDIIDCVCIYKQPAFDHPALKDHIIQM****************************************************************************LQQPNHSKAILLTVGYMFSGAKGDIKVWNPFVESDDEYSTSRVSLQSGPYYDFESIESGWAVNPRVYGDRKTRLFVYWTADASKTTGCFDVTCPGFVQVSNEIALGAAIYPISNPNGLPYQITIYLFKDPDTGNWWMQYGEKINVGYWPPKLFSLLPSGAESAEWGGEVYSSKLE**********NGHFPDYISGNSGSVKRIRILDNSRTLKFPEWVYSYTDQYNCYGVDYVGDYIVDPEFYFGGPGRN****
MEYILGCKGFIILLGVTFVISYEFAKGEIISGQKSSYIGRKVNHLNSNGNVVKSIQSEDGDIIDCVCIYKQPAFDHPALKDHIIQMTPTYDPNGKTVTTGSADTETSTTVMASQIWRKNGSCPEGTIPVRRIHNSNSFEGYGRKQPSFYHRVKQLNDIKQPNLQQPNHSKAILLTVGYMFSGAKGDIKVWNPFVES**********LQSGPYYDFESIESGWAVNPRVYGDRKTRLFVYWTADASKTTGCFDVTCPGFVQVSNEIALGAAIYPISNPNGLPYQITIYLFKDPDTGNWWMQYGEKINVGYWPPKLFSLLPSGAESAEWGGEVYSSKLENPPHTATAMGNGHFPDYISGNSGSVKRIRILDNSRTLKFPEWVYSYTDQYNCYGVDYVGDYIVDPEFYFGGPGRNHLCP
*EYILGCKGFIILLGVTFVISYEFAKGEIISGQKSSYIGRKVNHLNSNGNVVKSIQSEDGDIIDCVCIYKQPAFDHPALKDHIIQMTPTYDP*****************VMASQIWRKNGSCPEGTIPVRRIHNSNSFEGYGRKQ******************QQPNHSKAILLTVGYMFSGAKGDIKVWNPFVESDDEYSTSRVSLQSGPYYDFESIESGWAVNPRVYGDRKTRLFVYWTADASKTTGCFDVTCPGFVQVSNEIALGAAIYPISNPNGLPYQITIYLFKDPDTGNWWMQYGEKINVGYWPPKLFSLLPSGAESAEWGGEVYSSKLENPPHTATAMGNGHFPDYISGNSGSVKRIRILDNSRTLKFPEWVYSYTDQYNCYGVDYVGDYIVDPEFYFGGPGRNHLC*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEYILGCKGFIILLGVTFVISYEFAKGEIISGQKSSYIGRKVNHLNSNGNVVKSIQSEDGDIIDCVCIYKQPAFDHPALKDHIIQMTPTYDPNGKTVTTGSADTETSTTVMASQIWRKNGSCPEGTIPVRRIHNSNSFEGYGRKQPSFYHRVKQLNDIKQPNLQQPNHSKAILLTVGYMFSGAKGDIKVWNPFVESDDEYSTSRVSLQSGPYYDFESIESGWAVNPRVYGDRKTRLFVYWTADASKTTGCFDVTCPGFVQVSNEIALGAAIYPISNPNGLPYQITIYLFKDPDTGNWWMQYGEKINVGYWPPKLFSLLPSGAESAEWGGEVYSSKLENPPHTATAMGNGHFPDYISGNSGSVKRIRILDNSRTLKFPEWVYSYTDQYNCYGVDYVGDYIVDPEFYFGGPGRNHLCP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query416
224088940365 predicted protein [Populus trichocarpa] 0.836 0.953 0.684 1e-144
147799469 990 hypothetical protein VITISV_040197 [Viti 0.971 0.408 0.640 1e-141
449450574421 PREDICTED: uncharacterized protein LOC10 0.971 0.959 0.574 1e-135
449532467414 PREDICTED: uncharacterized LOC101203978, 0.954 0.958 0.574 1e-133
356562205431 PREDICTED: uncharacterized protein LOC10 0.983 0.948 0.576 1e-129
359475931379 PREDICTED: uncharacterized protein LOC10 0.838 0.920 0.572 1e-120
296081605 819 unnamed protein product [Vitis vinifera] 0.848 0.431 0.628 1e-116
224088948418 predicted protein [Populus trichocarpa] 0.920 0.916 0.471 2e-90
449447325409 PREDICTED: uncharacterized protein LOC10 0.843 0.858 0.456 9e-88
449517126409 PREDICTED: uncharacterized protein LOC10 0.843 0.858 0.454 6e-87
>gi|224088940|ref|XP_002308583.1| predicted protein [Populus trichocarpa] gi|222854559|gb|EEE92106.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 243/355 (68%), Positives = 291/355 (81%), Gaps = 7/355 (1%)

Query: 69  YKQPAFDHPALKDHIIQMTPTYDPNGKTVTTGS--ADTETSTTVMASQIWRKNGSCPEGT 126
           YKQPAFDHPAL++H IQM P+YDPN +  TT +     + S+  +AS++W+K+GSCP+GT
Sbjct: 11  YKQPAFDHPALRNHTIQMAPSYDPNIEETTTKANRLQNQDSSMNLASRLWQKSGSCPKGT 70

Query: 127 IPVRRIHN-----SNSFEGYGRKQPSFYHRVKQLNDIKQPNLQQPNHSKAILLTVGYMFS 181
           IPVRR+       +NS E YGRK+P     + ++N     NLQQ N S AILLT GY +S
Sbjct: 71  IPVRRLPQKVPLKTNSLEDYGRKKPCSSPPLTRINKDISSNLQQSNRSVAILLTEGYSYS 130

Query: 182 GAKGDIKVWNPFVESDDEYSTSRVSLQSGPYYDFESIESGWAVNPRVYGDRKTRLFVYWT 241
           G KGDIKVWNP VESDDEYSTS+VSL+SGPYYDFES+E+GWAVNP VYGDRKTRLFVYWT
Sbjct: 131 GVKGDIKVWNPHVESDDEYSTSQVSLKSGPYYDFESVEAGWAVNPSVYGDRKTRLFVYWT 190

Query: 242 ADASKTTGCFDVTCPGFVQVSNEIALGAAIYPISNPNGLPYQITIYLFKDPDTGNWWMQY 301
           ADASK TGCFD+TCPGFVQ S+EIALGAAIYP+S P+GLPYQIT+++FKDP+TGNWW+QY
Sbjct: 191 ADASKKTGCFDLTCPGFVQTSSEIALGAAIYPLSVPSGLPYQITLFIFKDPNTGNWWVQY 250

Query: 302 GEKINVGYWPPKLFSLLPSGAESAEWGGEVYSSKLENPPHTATAMGNGHFPDYISGNSGS 361
           GEKIN+GYWPP LF+ L   AE+AEWGGEVYSSKLE+PPHT TAMGNG FPDY+SGNSG 
Sbjct: 251 GEKINLGYWPPDLFAWLRGNAETAEWGGEVYSSKLEHPPHTKTAMGNGQFPDYVSGNSGC 310

Query: 362 VKRIRILDNSRTLKFPEWVYSYTDQYNCYGVDYVGDYIVDPEFYFGGPGRNHLCP 416
           +KR+RI +NS  LKFPEWV ++  +Y CY  +Y+GDYI DPEFY+GGPG+N LCP
Sbjct: 311 IKRMRIRENSLVLKFPEWVSTFLHEYRCYDAEYIGDYIEDPEFYYGGPGQNPLCP 365




Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147799469|emb|CAN70607.1| hypothetical protein VITISV_040197 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449450574|ref|XP_004143037.1| PREDICTED: uncharacterized protein LOC101203978 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449532467|ref|XP_004173202.1| PREDICTED: uncharacterized LOC101203978, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|356562205|ref|XP_003549362.1| PREDICTED: uncharacterized protein LOC100816380 [Glycine max] Back     alignment and taxonomy information
>gi|359475931|ref|XP_002278618.2| PREDICTED: uncharacterized protein LOC100245679 [Vitis vinifera] Back     alignment and taxonomy information
>gi|296081605|emb|CBI20610.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224088948|ref|XP_002308584.1| predicted protein [Populus trichocarpa] gi|222854560|gb|EEE92107.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449447325|ref|XP_004141419.1| PREDICTED: uncharacterized protein LOC101213587 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449517126|ref|XP_004165597.1| PREDICTED: uncharacterized protein LOC101231919 [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query416
TAIR|locus:2092870419 AT3G13510 [Arabidopsis thalian 0.961 0.954 0.406 1.5e-83
TAIR|locus:2035666422 AT1G55360 [Arabidopsis thalian 0.963 0.950 0.410 1.9e-83
TAIR|locus:2167121420 AT5G56530 "AT5G56530" [Arabido 0.961 0.952 0.414 1.3e-82
TAIR|locus:2180647432 AT5G25950 "AT5G25950" [Arabido 0.908 0.875 0.440 2.8e-82
TAIR|locus:2050487445 AT2G44210 [Arabidopsis thalian 0.879 0.822 0.423 7.6e-80
TAIR|locus:2180542352 AT5G25960 [Arabidopsis thalian 0.603 0.713 0.426 3.6e-76
TAIR|locus:2050579402 AT2G44240 [Arabidopsis thalian 0.949 0.982 0.376 1.9e-74
TAIR|locus:2146258430 AT5G18460 [Arabidopsis thalian 0.903 0.874 0.398 6.1e-71
TAIR|locus:2050528403 AT2G44220 [Arabidopsis thalian 0.935 0.965 0.366 3e-69
TAIR|locus:2827901396 NIP1 "NEP-interacting protein 0.925 0.972 0.367 1.3e-66
TAIR|locus:2092870 AT3G13510 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 837 (299.7 bits), Expect = 1.5e-83, P = 1.5e-83
 Identities = 169/416 (40%), Positives = 243/416 (58%)

Query:     8 KGFIILLGVTFVISYEFAKGEIISGQKSSYIGRKVNHLNSNGNVVKSIQSEDGDIIDCVC 67
             +GF + L V  ++S   A     S ++   + + +N LN     VK+IQS DGDIIDC+ 
Sbjct:    13 RGFFVCLWV--MLSLSCAAASYGSSRQKFEVKKHLNRLNKPP--VKTIQSPDGDIIDCIP 68

Query:    68 IYKQPAFDHPALKDHIIQMTPTYDPNGKXXXXXXXXXXXXXXXMASQIWRKNGSCPEGTI 127
             I KQPAFDHP LKDH IQM P+Y P G                   Q+W + G C EGTI
Sbjct:    69 ISKQPAFDHPFLKDHKIQMRPSYHPEGLFDDNKVSAEPKGKETHIPQLWHRYGKCTEGTI 128

Query:   128 PVRR-----IHNSNSFEGYGRKQPSFYHRVKQLNDIKQPNL-QQPNHSKAILLTVGYMFS 181
             P+RR     +  ++S + YG+K+    HR   +    +P+L  Q  H  AI    G  + 
Sbjct:   129 PMRRTREDDVLRASSVKRYGKKK----HRSVPIPKSAEPDLINQNGHQHAIAYVEGDKYY 184

Query:   182 GAKGDIKVWNPFVESDDEYSTSRVSLQSGPY-YDFESIESGWAVNPRVYGDRKTRLFVYW 240
             GAK  + VW P +++ +E+S S++ L  G +  D  SIE+GW V+P +YGD  TRLF YW
Sbjct:   185 GAKATLNVWEPKIQNTNEFSLSQIWLLGGSFGQDLNSIEAGWQVSPDLYGDNNTRLFTYW 244

Query:   241 TADASKTTGCFDVTCPGFVQVSNEIALGAAIYPISNPNGLPYQITIYLFKDPDTGNWWMQ 300
             T+DA + TGC+++ C GF+Q++++IA+GA+I P+S      Y I+I ++KDP  G+WWMQ
Sbjct:   245 TSDAYQATGCYNLLCSGFIQINSDIAMGASISPVSGYRNSQYDISILIWKDPKEGHWWMQ 304

Query:   301 YGEKINVGYWPPKLFSLLPSGAESAEWGGEVYSSKLENPPHTATAMGNGHFPDYISGNSG 360
             +G    +GYWP  LFS L   A   EWGGEV +S+ E   HT T MG+GHFP+     + 
Sbjct:   305 FGNGYVLGYWPSFLFSYLTESASMIEWGGEVVNSQSEGH-HTWTQMGSGHFPEEGFSKAS 363

Query:   361 SVKRIRILDNSRTLKFPEWVYSYTDQYNCYGVDYVGDYIVDPEFYFGGPGRNHLCP 416
               + I+++D S  LK P+ + ++T++ NCY V    +      FY+GGPG+N  CP
Sbjct:   364 YFRNIQVVDGSNNLKAPKGLGTFTEKSNCYDVQTGSNDDWGHYFYYGGPGKNKNCP 419




GO:0005576 "extracellular region" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA
GO:0009744 "response to sucrose stimulus" evidence=RCA
GO:0009813 "flavonoid biosynthetic process" evidence=RCA
GO:0009855 "determination of bilateral symmetry" evidence=RCA
GO:0009887 "organ morphogenesis" evidence=RCA
GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA
GO:0010014 "meristem initiation" evidence=RCA
GO:0010051 "xylem and phloem pattern formation" evidence=RCA
GO:0010073 "meristem maintenance" evidence=RCA
GO:0010075 "regulation of meristem growth" evidence=RCA
GO:0010224 "response to UV-B" evidence=RCA
GO:0016246 "RNA interference" evidence=RCA
GO:0048439 "flower morphogenesis" evidence=RCA
GO:0048519 "negative regulation of biological process" evidence=RCA
TAIR|locus:2035666 AT1G55360 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2167121 AT5G56530 "AT5G56530" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2180647 AT5G25950 "AT5G25950" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050487 AT2G44210 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2180542 AT5G25960 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050579 AT2G44240 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2146258 AT5G18460 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050528 AT2G44220 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2827901 NIP1 "NEP-interacting protein 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
gw1.VI.737.1
hypothetical protein (365 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query416
pfam03080230 pfam03080, DUF239, Domain of unknown function (DUF 1e-85
pfam14365117 pfam14365, DUF4409, Domain of unknown function (DU 5e-32
>gnl|CDD|217358 pfam03080, DUF239, Domain of unknown function (DUF239) Back     alignment and domain information
 Score =  260 bits (666), Expect = 1e-85
 Identities = 104/234 (44%), Positives = 145/234 (61%), Gaps = 8/234 (3%)

Query: 180 FSGAKGDIKVWNPFVESDDEYSTSRVSLQSGP-YYDFESIESGWAVNPRVYGDRKTRLFV 238
           + GA+  I V+NP V++ +++S S++ + +GP   D  SI++GW VNP +YGD +TRLF 
Sbjct: 1   YYGAQATINVYNPKVQNPNQFSLSQIWIVNGPENGDLNSIQAGWQVNPSLYGDNRTRLFT 60

Query: 239 YWTADASKTTGCFDVTCPGFVQVSNEIALGAAIYPISNPNGLPYQITIYLFKDPDTGNWW 298
           YWT D    TGC+++ CPGFVQVS++IALG AI P+S   G  Y IT+ ++KDP TGNWW
Sbjct: 61  YWT-DGYNKTGCYNLLCPGFVQVSSKIALGGAISPVSVYGGKQYDITLLIWKDPKTGNWW 119

Query: 299 MQYGEKINVGYWPPKLFSLLPSGAESAEWGGEVYSSKLENPPHTATAMGNGHFPDYISGN 358
           + YG    +GYWP  LF+ L SGA   EWGGEVYS       H +  MG+GHFP+   G 
Sbjct: 120 LTYGNNTVIGYWPSSLFTHLSSGATMVEWGGEVYSPP---GGHPSPPMGSGHFPEEGFGK 176

Query: 359 SGSVKRIRILDNSRTLKFPEW--VYSYTDQYNCYGVDYVGDYIVDPE-FYFGGP 409
           +   + I+++D    L  P+   + ++ D  NCY V   G        FY+GGP
Sbjct: 177 AAYFRNIKVVDEDNKLVKPDEDKLETFADSPNCYNVKDGGYTGEWGHAFYYGGP 230


This is a family of plant and bacterial proteins, a small number of which are putative carboxy-terminal peptidases. Length = 230

>gnl|CDD|206533 pfam14365, DUF4409, Domain of unknown function (DUF4409) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 416
PF03080229 DUF239: Domain of unknown function (DUF239); Inter 100.0
PF14365117 DUF4409: Domain of unknown function (DUF4409) 100.0
>PF03080 DUF239: Domain of unknown function (DUF239); InterPro: IPR004314 This is a family of plant proteins, a small number of which are putative peptidases (see for example Q9XIN9 from SWISSPROT) Back     alignment and domain information
Probab=100.00  E-value=9.7e-83  Score=609.11  Aligned_cols=226  Identities=47%  Similarity=0.963  Sum_probs=213.7

Q ss_pred             eeeeEEEEEeecCCccCCCCceEEEEEeeeCC-CCccceEEEeEEEcCceeCCCceEEEEEEeeCCCCccCccCCCCCcc
Q 040197          180 FSGAKGDIKVWNPFVESDDEYSTSRVSLQSGP-YYDFESIESGWAVNPRVYGDRKTRLFVYWTADASKTTGCFDVTCPGF  258 (416)
Q Consensus       180 ~~G~~a~i~V~~P~v~~~~q~S~s~iwi~~g~-~~~~n~IeaGW~V~P~lYgD~~~rlf~yWt~d~y~~tGCyNl~CpGF  258 (416)
                      |||++|+||||+|+|+.++|||++||||++++ .+.+|+|||||+|+|+||||++||||+|||+|+|++|||||++||||
T Consensus         1 y~G~~a~i~v~~p~v~~~~q~S~~~i~i~~g~~~~~~~~i~~GW~V~P~lygd~~~~lf~~wt~d~~~~tgCyN~~CpGF   80 (229)
T PF03080_consen    1 YYGARATISVWNPKVQQPDQFSLSQIWISNGSDDDSLNSIEAGWQVYPSLYGDSRTRLFVYWTADGYQKTGCYNLDCPGF   80 (229)
T ss_pred             CeeeEEEEECcCCccCCccceeheeEEEEecCCCCCCcEEEEeeeccccccCCCceEEEEEEEccCCCCcceeCCCCCcE
Confidence            79999999999999998789999999999999 78899999999999999999999999999999999999999999999


Q ss_pred             EEeecccccCcccccccCCCCceeEEEEEEeeCCCCCCeEEEeCCcceeeeeCccccccCcCCceEEEEeeEEeccCCCC
Q 040197          259 VQVSNEIALGAAIYPISNPNGLPYQITIYLFKDPDTGNWWMQYGEKINVGYWPPKLFSLLPSGAESAEWGGEVYSSKLEN  338 (416)
Q Consensus       259 VQvs~~i~lG~~i~pvS~~gG~q~~i~i~I~kD~~tgnWWL~~g~~~~IGYWP~sLF~~L~~~A~~V~wGGeV~~~~~~~  338 (416)
                      |||+++|+||++|+|+|+++|+|++|+|+|+||+.+|||||+++++ .|||||++||++|+++|+.|+|||||++++.  
T Consensus        81 Vq~s~~i~~G~~~~~~S~~gG~q~~i~~~i~kD~~~gnWWL~~~~~-~IGYwP~sLF~~l~~~A~~v~wGGeV~~~~~--  157 (229)
T PF03080_consen   81 VQVSSSIALGAAISPVSTYGGKQYEITLSIFKDPKSGNWWLYYGGE-PIGYWPKSLFTSLADGATEVEWGGEVYSPPG--  157 (229)
T ss_pred             EEeCCccccceeeCCCccCCCceEEEEEEEEecCCCccEEEEEecc-eeeeehHHhhhhhhcCceEEEEEEEEeCCCC--
Confidence            9999999999999999999999999999999999999999999876 7999999999999999999999999998874  


Q ss_pred             CCCCCCCCCCCCCCCCCCCceEEEeccEEEcCCCCccCCc--ceeecccCCCceEEeecCccCCCCEEEEeCC
Q 040197          339 PPHTATAMGNGHFPDYISGNSGSVKRIRILDNSRTLKFPE--WVYSYTDQYNCYGVDYVGDYIVDPEFYFGGP  409 (416)
Q Consensus       339 ~~~tsp~MGSG~fp~~g~~~Aay~~ni~ivd~~~~~~~p~--~~~~~~d~p~CY~v~~~~~~~~~~~f~yGGP  409 (416)
                       +||+|||||||||++++++|||||||+++|.+++.+.+.  .+++++|+|+||++....+..++.+||||||
T Consensus       158 -~~~sppMGSG~fp~~g~~~aAy~~~i~~~d~~~~~~~~~~~~~~~~~~~~~CY~~~~~~~~~~g~~f~yGGP  229 (229)
T PF03080_consen  158 -RHTSPPMGSGHFPSEGFGKAAYFRNIQVVDSNGQFVDPNDDLLEVFADNPSCYDVSYIGDGDWGYYFFYGGP  229 (229)
T ss_pred             -CCCCCCccCCcCCCCCCCccEEEEEEEEEcCCCCCcCCcccceeEccCCCCceeEeeccCCCcccEEEeeCC
Confidence             589999999999999999999999999999999988774  5778999999999998654224499999999



However, the structure of the protein PDB3:3eu8 has an alpha-alpha toroid fold and is similar to a glucoamylase, PDB:1ayx. Such glucoamylases are involved in breaking down complex sugars (e.g. starch). The biologically relevant state is likely to be monomeric. The putative active site is located at the centre of the toroid with a well defined large cavity. Further structural comparisons also show relationships with other glycohydrolases.

>PF14365 DUF4409: Domain of unknown function (DUF4409) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00