Citrus Sinensis ID: 040220

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370
IGTSFGKFVKVKFSDNPYENEYDGFCIELYYESQLACKGISILFFFLQLMMRIRHEENFLRNYDSVVGDATILADRAKIVEFTQPCAESRLSMIVPAKTEESAWRFMKPCTWEMWVVTDAILVNTRFVVWFPEHQRNSEFNGPRKDQIGTALWFNFSSILFAYGKEHVLHFIIMVNWKPIFGGRIDSNLTRLVVVVWLFVVLILTSSYTASPSPMLTVQPLRPNPKVACDRDSFVRNYLQNFGSDYNYQGEFGSNHIAGPPYEKVFVSQYCRIYAATTPTYGFGGLGFLSSPIAADFSEAILKLSENKKLKSLEYNEKELEPPGELYRLLGLLMYMSGALSRWEYVDPSNASDNLHQSSEDTTGMQCFPD
cccccccccEEEEccccccccEEEEEHHHHHHHHHHcccccEEEEEEEccccHHHHHHccccccEEEEEEEEEcccEEEEEEEcccccccEEEEEEcccccccEEEEccccHHHHHHHHHHHHHHHEEEEEcccccccccccccccccHHHHHHHHHHHHHHcccccccEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccHHHcccccccccEEEEccHHHHHHHHHcccHHHHHHHHccccccccHHHHHHHHcccccEEEcccccccccccccccccHHHHHHHHHccccccHHHHHHHccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccc
cccccccEEEEEEccccccccEEEEHHHHHHHHHHHHccccEEEEccccccccHHHHHHcccccEEEEEEEEEEEcEEEEEccccHHHccEEEEEEcccccccEEEcccccHHHHHHHHHHHHHHHHHHHHHHHcccHHccccccccccEEEEEcccHHHHccccccEEEEEHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEcccHHHHHHHHHccHHHHHHHHccccccccHHHHHHHccccccEEEEccccccccccccccccHHHHHHHHHHHccccHHHHHHHHHHccccccccHcHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccccc
igtsfgkfvkvkfsdnpyeneydGFCIELYYESQLACKGISILFFFLQLMMRIRHEENFLrnydsvvgdatILADRAKIVeftqpcaesrlsmivpakteesawrfmkpctweMWVVTDAILVNTRFVVwfpehqrnsefngprkdqigtalWFNFSSILFAYGKEHVLHFIIMVnwkpifggridsnLTRLVVVVWLFVVLILTssytaspspmltvqplrpnpkvacdrdSFVRNYLQnfgsdynyqgefgsnhiagppyekvFVSQYCRIyaattptygfgglgflsspiaaDFSEAILKLSENkklksleynekeleppgeLYRLLGLLMYMSGALsrweyvdpsnasdnlhqssedttgmqcfpd
igtsfgkfvkvkfsdnpyeNEYDGFCIELYYESQLACKGISILFFFLQLMMRIRHEENFLRNYDSVVGDATILADRAKIVEftqpcaesrlsmivPAKTEESAWRFMKPCTWEMWVVTDAILVNTRFVVWFPEHQRNSEFNGPRKDQIGTALWFNFSSILFAYGKEHVLHFIIMVNWKPIFGGRIDSNLTRLVVVVWLFVVLILTSsytaspspmltvqplrpnpKVACDRDSFVRNYLQNFGSDYNYQGEFGSNHIAGPPYEKVFVSQYCRIYAATTPTYGFGGLGFLSSPIAADFSEAILKLSenkklksleynekeleppGELYRLLGLLMYMSGALSRWEYVDPSNASdnlhqssedttgmqcfpd
IGTSFGKFVKVKFSDNPYENEYDGFCIELYYESQLACKGISILFFFLQLMMRIRHEENFLRNYDSVVGDATILADRAKIVEFTQPCAESRLSMIVPAKTEESAWRFMKPCTWEMWVVTDAILVNTRFVVWFPEHQRNSEFNGPRKDQIGTALWFNFSSILFAYGKEHVLHFIIMVNWKPIFGGRIDSNltrlvvvvwlfvvlilTSSYTASPSPMLTVQPLRPNPKVACDRDSFVRNYLQNFGSDYNYQGEFGSNHIAGPPYEKVFVSQYCRIYAATTPTYGFGGLGFLSSPIAADFSEAIlklsenkklksleYNEKELEPPGELYRLLGLLMYMSGALSRWEYVDPSNASDNLHQSSEDTTGMQCFPD
*****GKFVKVKFSDNPYENEYDGFCIELYYESQLACKGISILFFFLQLMMRIRHEENFLRNYDSVVGDATILADRAKIVEFTQPCAESRLSMIVPAKTEESAWRFMKPCTWEMWVVTDAILVNTRFVVWFPEHQR*******RKDQIGTALWFNFSSILFAYGKEHVLHFIIMVNWKPIFGGRIDSNLTRLVVVVWLFVVLILTSSYTA*****LTV******PKVACDRDSFVRNYLQNFGSDYNYQGEFGSNHIAGPPYEKVFVSQYCRIYAATTPTYGFGGLGFLSSPIAADFSEAILKLS******************GELYRLLGLLMYMSGALSRWEYV************************
*GTSFGKFVKVKFSDNPYENEYDGFCIELYYESQLACKGISILFFFLQLMMRIRHEENFLRNYDSVVGDATILADRAKIVEFTQPCAESRLSMIVPAKTEESAWRFMKPCTWEMWVVTDAILVNTRFVVWFPEHQRNSEFNGPRKDQIGTALWFNFSSILFAYGKEHVLHFIIMVNWKPIFGGRIDSNLTRLVVVVWLFVVLILTSSYTASPSPMLT***********CDRDSFVRNYLQNFGSDY*Y**EF*SNHIAGPPYEKVFVSQYCRIYAATTPTYGFGGLGFLSSPIAADFSEAILKLSENKKLKSLEYNEKELEPPGELYRLLGLLMYMSGALSRWEYVDPSNASDNLHQSSEDTTGMQCFP*
IGTSFGKFVKVKFSDNPYENEYDGFCIELYYESQLACKGISILFFFLQLMMRIRHEENFLRNYDSVVGDATILADRAKIVEFTQPCAESRLSMIVPAKTEESAWRFMKPCTWEMWVVTDAILVNTRFVVWFPEHQRNSEFNGPRKDQIGTALWFNFSSILFAYGKEHVLHFIIMVNWKPIFGGRIDSNLTRLVVVVWLFVVLILTSSYTASPSPMLTVQPLRPNPKVACDRDSFVRNYLQNFGSDYNYQGEFGSNHIAGPPYEKVFVSQYCRIYAATTPTYGFGGLGFLSSPIAADFSEAILKLSENKKLKSLEYNEKELEPPGELYRLLGLLMYMSGALSRWEYVDPS*********************
**TSFGKFVKVKFSDNPYENEYDGFCIELYYESQLACKGISILFFFLQLMMRIRHEENFLRNYDSVVGDATILADRAKIVEFTQPCAESRLSMIVPAKTEESAWRFMKPCTWEMWVVTDAILVNTRFVVWFPEHQRNSEFNGPRKDQIGTALWFNFSSILFAYGKEHVLHFIIMVNWKPIFGGRIDSNLTRLVVVVWLFVVLILTSSYTASPSPMLTVQPLRPNPKVACDRDSFVRNYLQNFGSDYNYQGEFGSNHIAGPPYEKVFVSQYCRIYAATTPTYGFGGLGFLSSPIAADFSEAILKLSENKKLKSLEYNEKELEPPGELYRLLGLLMYMSGALSRWEYVDPSNASDNLHQSSEDTTGMQCFPD
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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IGTSFGKFVKVKFSDNPYENEYDGFCIELYYESQLACKGISILFFFLQLMMRIRHEENFLRNYDSVVGDATILADRAKIVEFTQPCAESRLSMIVPAKTEESAWRFMKPCTWEMWVVTDAILVNTRFVVWFPEHQRNSEFNGPRKDQIGTALWFNFSSILFAYGKEHVLHFIIMVNWKPIFGGRIDSNLTRLVVVVWLFVVLILTSSYTASPSPMLTVQPLRPNPKVACDRDSFVRNYLQNFGSDYNYQGEFGSNHIAGPPYEKVFVSQYCRIYAATTPTYGFGGLGFLSSPIAADFSEAILKLSENKKLKSLEYNEKELEPPGELYRLLGLLMYMSGALSRWEYVDPSNASDNLHQSSEDTTGMQCFPD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query370 2.2.26 [Sep-21-2011]
Q8LGN0 952 Glutamate receptor 2.7 OS yes no 0.783 0.304 0.321 6e-40
O81776896 Glutamate receptor 2.4 OS no no 0.783 0.323 0.347 4e-39
Q7XJL2921 Glutamate receptor 3.1 OS no no 0.748 0.300 0.318 8e-36
Q93YT1912 Glutamate receptor 3.2 OS no no 0.629 0.255 0.351 2e-35
Q9C8E7933 Glutamate receptor 3.3 OS no no 0.735 0.291 0.328 2e-35
Q9SHV1920 Glutamate receptor 2.2 OS no no 0.770 0.309 0.310 1e-33
O81078 940 Glutamate receptor 2.9 OS no no 0.778 0.306 0.351 2e-33
Q7XP59938 Glutamate receptor 3.1 OS no no 0.629 0.248 0.343 6e-33
Q9LFN5918 Glutamate receptor 2.5 OS no no 0.789 0.318 0.317 7e-33
O04660901 Glutamate receptor 2.1 OS no no 0.791 0.325 0.309 2e-32
>sp|Q8LGN0|GLR27_ARATH Glutamate receptor 2.7 OS=Arabidopsis thaliana GN=GLR2.7 PE=2 SV=3 Back     alignment and function desciption
 Score =  165 bits (417), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 113/352 (32%), Positives = 178/352 (50%), Gaps = 62/352 (17%)

Query: 1   IGTSFGKFVKVKFSDNPYENEYD--GFCIELYYESQLACKGISILFFFLQLMMRIRHEEN 58
           +   F +FV  K   +P  N     G+CIE++ E+ L     S++  ++  +    + + 
Sbjct: 468 VKKGFLEFVDAKI--DPISNAMTPTGYCIEIF-EAVLKKLPYSVIPKYIAFLSPDENYDE 524

Query: 59  FLRN-----YDSVVGDATILADRAKIVEFTQPCAESRLSMIVPAKTEESAWRFMKPCTWE 113
            +       YD+VVGD TI+A+R+  V+FT P  ES +SM+VP K  ++ W F++P + +
Sbjct: 525 MVYQVYTGAYDAVVGDVTIVANRSLYVDFTLPYTESGVSMMVPLKDNKNTWVFLRPWSLD 584

Query: 114 MWVVTDAILVNTRFVVWFPEHQRNSEFNGPRKDQIGTALWFNFSSILFAYGKEHVLHFII 173
           +WV T    V   F+VW  EH+ N++F GP   QIGT+ WF FS++ FA+ +E V+    
Sbjct: 585 LWVTTACFFVFIGFIVWILEHRVNTDFRGPPHHQIGTSFWFAFSTMNFAH-REKVV---- 639

Query: 174 MVNWKPIFGGRIDSNLTRLVVVVWLFVVLILTSSYTASPSPMLTVQPLRP---------- 223
                        SNL R VV+VW FVVL+L  SYTA+ +   TV+ L+P          
Sbjct: 640 -------------SNLARFVVLVWCFVVLVLIQSYTANLTSFFTVKLLQPTVTNWKDLIK 686

Query: 224 -NPKVACDRDSFVRNYLQNFGSDYNYQGEFGS-----------------NHIAGPPYEKV 265
            N  +   R +FVR  L++ G D +    FGS                 + +A   Y KV
Sbjct: 687 FNKNIGYQRGTFVRELLKSQGFDESQLKPFGSAVECDELFSNGTITASFDEVA---YIKV 743

Query: 266 FVSQYCRIYAATTPTYGFGGLGFL---SSPIAADFSEAILKLSENKKLKSLE 314
            +SQ    Y    P++   G GF+    SP+  D S AIL +++ ++++ +E
Sbjct: 744 ILSQNSSKYTMVEPSFKTAGFGFVFPKKSPLTDDVSRAILNVTQGEEMQHIE 795
Glutamate-gated receptor that probably acts as non-selective cation channel. May be involved in light-signal transduction and calcium homeostasis via the regulation of calcium influx into cells.
Arabidopsis thaliana (taxid: 3702)
>sp|O81776|GLR24_ARATH Glutamate receptor 2.4 OS=Arabidopsis thaliana GN=GLR2.4 PE=2 SV=2 Back     alignment and function description
>sp|Q7XJL2|GLR31_ARATH Glutamate receptor 3.1 OS=Arabidopsis thaliana GN=GLR3.1 PE=2 SV=2 Back     alignment and function description
>sp|Q93YT1|GLR32_ARATH Glutamate receptor 3.2 OS=Arabidopsis thaliana GN=GLR3.2 PE=1 SV=2 Back     alignment and function description
>sp|Q9C8E7|GLR33_ARATH Glutamate receptor 3.3 OS=Arabidopsis thaliana GN=GLR3.3 PE=2 SV=1 Back     alignment and function description
>sp|Q9SHV1|GLR22_ARATH Glutamate receptor 2.2 OS=Arabidopsis thaliana GN=GLR2.2 PE=2 SV=1 Back     alignment and function description
>sp|O81078|GLR29_ARATH Glutamate receptor 2.9 OS=Arabidopsis thaliana GN=GLR2.9 PE=2 SV=1 Back     alignment and function description
>sp|Q7XP59|GLR31_ORYSJ Glutamate receptor 3.1 OS=Oryza sativa subsp. japonica GN=GLR3.1 PE=1 SV=1 Back     alignment and function description
>sp|Q9LFN5|GLR25_ARATH Glutamate receptor 2.5 OS=Arabidopsis thaliana GN=GLR2.5 PE=1 SV=2 Back     alignment and function description
>sp|O04660|GLR21_ARATH Glutamate receptor 2.1 OS=Arabidopsis thaliana GN=GLR2.1 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query370
224077014 931 glutamate-gated kainate-type ion channel 0.783 0.311 0.530 2e-73
224077016 784 glutamate-gated kainate-type ion channel 0.816 0.385 0.512 1e-71
255563044 843 glutamate receptor 2 plant, putative [Ri 0.783 0.344 0.510 3e-67
297740467 924 unnamed protein product [Vitis vinifera] 0.783 0.313 0.472 3e-65
147838919 916 hypothetical protein VITISV_034689 [Viti 0.781 0.315 0.475 4e-65
225443524 916 PREDICTED: glutamate receptor 2.7-like [ 0.781 0.315 0.475 5e-65
356546605 910 PREDICTED: glutamate receptor 2.7-like [ 0.781 0.317 0.450 2e-63
357446857 1083 Glutamate receptor 2.7 [Medicago truncat 0.824 0.281 0.434 3e-63
356519637 1033 PREDICTED: glutamate receptor 2.7-like [ 0.791 0.283 0.428 3e-62
356546603 914 PREDICTED: glutamate receptor 2.7-like [ 0.781 0.316 0.422 2e-61
>gi|224077014|ref|XP_002305093.1| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa] gi|222848057|gb|EEE85604.1| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  282 bits (722), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 183/345 (53%), Positives = 223/345 (64%), Gaps = 55/345 (15%)

Query: 3   TSFGKFVKVKFSDNPYENEYDGFCIELYYESQLACKGISILFFFLQLMMR----IRHEEN 58
           TSF KFVKV  ++   + EYDGFCIEL+Y+  L      + + F+         + H  N
Sbjct: 461 TSFEKFVKVS-TNAAGKKEYDGFCIELFYKV-LGVLAYDLPYQFIPYNGTYDDLVDHVYN 518

Query: 59  FLRNYDSVVGDATILADRAKIVEFTQPCAESRLSMIVPAKTEESAWRFMKPCTWEMWVVT 118
             + YD++VGD TILA RA+ VEFTQP AES LSMIVPAK +ESAW FMKP T EMW+VT
Sbjct: 519 --KTYDAIVGDVTILASRAEKVEFTQPYAESGLSMIVPAKYKESAWMFMKPFTKEMWLVT 576

Query: 119 DAILVNTRFVVWFPEHQRNSEFNGPRKDQIGTALWFNFSSILFAYGKEHVLHFIIMVNWK 178
            A+L+ T F+VWF EH  N EFNGP K+QIGTALWF FSS+ FA+ +             
Sbjct: 577 GAVLIYTMFIVWFLEHHTNPEFNGPWKNQIGTALWFTFSSLYFAHRE------------- 623

Query: 179 PIFGGRIDSNLTRLVVVVWLFVVLILTSSYTASPSPMLTVQPLRPNP-----------KV 227
                +I SNLTR+V+VVWLFVVLIL SSYTAS + MLTV+ L+PN            KV
Sbjct: 624 -----KIYSNLTRVVLVVWLFVVLILNSSYTASLASMLTVRRLQPNVTDIEWLKRNSLKV 678

Query: 228 ACDRDSFVRNYLQ-----------NFGSDYNYQGEFGSNHIAGP----PYEKVFVSQYCR 272
            CD DSFVRNYLQ           N  S+Y+Y+GEF S  I+      PYEKVF+  YC+
Sbjct: 679 GCDGDSFVRNYLQNVLGFKQENIKNVSSEYSYEGEFESATISAAFLELPYEKVFIGHYCK 738

Query: 273 IYAATTPTYGFGGLGFL---SSPIAADFSEAILKLSENKKLKSLE 314
            Y+ATTPTY FGGLGF+    SPIAAD S+AIL LSE+ +LK+LE
Sbjct: 739 RYSATTPTYRFGGLGFVFQKGSPIAADVSKAILNLSEDGELKNLE 783

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224077016|ref|XP_002305094.1| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa] gi|222848058|gb|EEE85605.1| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255563044|ref|XP_002522526.1| glutamate receptor 2 plant, putative [Ricinus communis] gi|223538217|gb|EEF39826.1| glutamate receptor 2 plant, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297740467|emb|CBI30649.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147838919|emb|CAN63664.1| hypothetical protein VITISV_034689 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225443524|ref|XP_002272216.1| PREDICTED: glutamate receptor 2.7-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356546605|ref|XP_003541715.1| PREDICTED: glutamate receptor 2.7-like [Glycine max] Back     alignment and taxonomy information
>gi|357446857|ref|XP_003593704.1| Glutamate receptor 2.7 [Medicago truncatula] gi|355482752|gb|AES63955.1| Glutamate receptor 2.7 [Medicago truncatula] Back     alignment and taxonomy information
>gi|356519637|ref|XP_003528477.1| PREDICTED: glutamate receptor 2.7-like [Glycine max] Back     alignment and taxonomy information
>gi|356546603|ref|XP_003541714.1| PREDICTED: glutamate receptor 2.7-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query370
TAIR|locus:2066148 940 GLR2.9 "glutamate receptor 2.9 0.451 0.177 0.365 8.1e-32
TAIR|locus:2066107 952 GLR2.7 "glutamate receptor 2.7 0.456 0.177 0.344 1.1e-27
TAIR|locus:2066086 947 GLR2.8 "glutamate receptor 2.8 0.305 0.119 0.420 2.1e-25
TAIR|locus:2047256920 GLR2.2 "glutamate receptor 2.2 0.445 0.179 0.349 2.1e-24
TAIR|locus:2122128912 GLUR2 "glutamate receptor 2" [ 0.310 0.126 0.406 8.9e-24
TAIR|locus:2181196901 GLR2.1 "glutamate receptor 2.1 0.467 0.192 0.299 3.3e-22
TAIR|locus:2206095933 GLR3.3 "glutamate receptor 3.3 0.429 0.170 0.363 4.6e-21
TAIR|locus:2207165959 GLR3.4 "AT1G05200" [Arabidopsi 0.462 0.178 0.333 6.1e-21
TAIR|locus:2047251895 GLR2.3 "glutamate receptor 2.3 0.440 0.182 0.308 2.5e-19
TAIR|locus:2166001867 ATGLR1.2 [Arabidopsis thaliana 0.456 0.194 0.319 2.7e-19
TAIR|locus:2066148 GLR2.9 "glutamate receptor 2.9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 272 (100.8 bits), Expect = 8.1e-32, Sum P(3) = 8.1e-32
 Identities = 68/186 (36%), Positives = 107/186 (57%)

Query:     6 GKFVKVKFSDNPYENEYD--GFCIELYYESQLACKGISILFFFLQLMMRIRHEENFL--- 60
             G F  VK + NP  N+    G+ IE++   + A K +  L     +     +  N L   
Sbjct:   454 GFFDFVKVTINPITNKKTPTGYAIEIF---EAALKELPYLVIPEYVSFESPNNYNNLVYQ 510

Query:    61 ---RNYDSVVGDATILADRAKIVEFTQPCAESRLSMIVPAKTEES--AWRFMKPCTWEMW 115
                + +D+VVGD TI A+R+   +FT P  ES +SM+VP +  E+   W F++P + E+W
Sbjct:   511 VYDKTWDAVVGDITITANRSLYADFTLPFTESGVSMMVPVRDNENKDTWVFLEPWSLELW 570

Query:   116 VVTDAILVNTRFVVWFPEHQRNSEFNGPRKDQIGTALWFNFSSILFAYGKEHVL----HF 171
             V T    V   FVVW  EH+ N++F GP + QIGT+LWF+FS+++FA+ +E+V+     F
Sbjct:   571 VTTGCFFVFIGFVVWLFEHRVNTDFRGPPQYQIGTSLWFSFSTMVFAH-RENVVSNLARF 629

Query:   172 IIMVNW 177
             +++V W
Sbjct:   630 VVVV-W 634
GO:0004970 "ionotropic glutamate receptor activity" evidence=IEA
GO:0005215 "transporter activity" evidence=IEA
GO:0005217 "intracellular ligand-gated ion channel activity" evidence=ISS
GO:0005234 "extracellular-glutamate-gated ion channel activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0006810 "transport" evidence=IEA
GO:0016020 "membrane" evidence=IEA
GO:0006874 "cellular calcium ion homeostasis" evidence=NAS
GO:0009416 "response to light stimulus" evidence=NAS
GO:0005515 "protein binding" evidence=IPI
GO:0030003 "cellular cation homeostasis" evidence=RCA
TAIR|locus:2066107 GLR2.7 "glutamate receptor 2.7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2066086 GLR2.8 "glutamate receptor 2.8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2047256 GLR2.2 "glutamate receptor 2.2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122128 GLUR2 "glutamate receptor 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2181196 GLR2.1 "glutamate receptor 2.1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2206095 GLR3.3 "glutamate receptor 3.3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2207165 GLR3.4 "AT1G05200" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2047251 GLR2.3 "glutamate receptor 2.3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2166001 ATGLR1.2 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_LG_IV0443
glutamate-gated kainate-type ion channel receptor subunit GluR5 (931 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query370
pfam00060268 pfam00060, Lig_chan, Ligand-gated ion channel 4e-20
smart00079133 smart00079, PBPe, Eukaryotic homologues of bacteri 3e-05
>gnl|CDD|215685 pfam00060, Lig_chan, Ligand-gated ion channel Back     alignment and domain information 
 Score = 88.5 bits (220), Expect = 4e-20
 Identities = 52/249 (20%), Positives = 88/249 (35%), Gaps = 66/249 (26%)

Query: 113 EMWVVTDAILVNTRFVVWFPEHQRNSEFNGPRKD----QIGTALWFNFSSILFAYGKEHV 168
           E+W+   A  +    V++  E     E+ GP ++     +  +LWF+F +          
Sbjct: 1   EVWLCILAAYLLVGVVLFLLERFSPYEWRGPPEEPNQFTLSNSLWFSFGA---------- 50

Query: 169 LHFIIMVNWKPIFGGRID--SNLTRLVVVVWLFVVLILTSSYTASPSPMLTVQPLRPNPK 226
                +V      G R    S   R++V VW F  LIL SSYTA+ +  LTV+ ++   +
Sbjct: 51  -----LVQ----QGHRELPRSLSGRILVGVWWFFALILLSSYTANLAAFLTVERMQSPIQ 101

Query: 227 VACD-----------------RDSFVRNYLQNFGSDYNY--------------------- 248
              D                  + F  +    +   + Y                     
Sbjct: 102 SLEDLAKQNKIGYGTLRGGSTFEFFKESKNPTYRRMWEYMISFKGEVNVESYEEGVQRVR 161

Query: 249 QGEFGSNHIAGPPYEKVFVSQYCRIYAATTPTYGFGGLGF---LSSPIAADFSEAILKLS 305
           +G      +    Y +  V++           +G  G G      SP+    S AIL+L 
Sbjct: 162 KGNGLYAFLMESAYLEYEVARDPCKLTTVGEVFGTKGYGIAFPKGSPLRDKLSRAILELR 221

Query: 306 ENKKLKSLE 314
           E+ +L+ LE
Sbjct: 222 ESGELQKLE 230

This family includes the four transmembrane regions of the ionotropic glutamate receptors and NMDA receptors. Length = 268
>gnl|CDD|197504 smart00079, PBPe, Eukaryotic homologues of bacterial periplasmic substrate binding proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 370
KOG1054897 consensus Glutamate-gated AMPA-type ion channel re 100.0
KOG4440 993 consensus NMDA selective glutamate-gated ion chann 100.0
KOG1052656 consensus Glutamate-gated kainate-type ion channel 100.0
KOG1053 1258 consensus Glutamate-gated NMDA-type ion channel re 100.0
PRK10797302 glutamate and aspartate transporter subunit; Provi 99.82
PF00497225 SBP_bac_3: Bacterial extracellular solute-binding 99.82
PRK09495247 glnH glutamine ABC transporter periplasmic protein 99.81
PRK15007243 putative ABC transporter arginine-biding protein; 99.78
PRK15010260 ABC transporter lysine/arginine/ornithine binding 99.78
PRK11917259 bifunctional adhesin/ABC transporter aspartate/glu 99.77
PRK11260266 cystine transporter subunit; Provisional 99.76
PRK15437259 histidine ABC transporter substrate-binding protei 99.74
TIGR01096250 3A0103s03R lysine-arginine-ornithine-binding perip 99.72
TIGR02995275 ectoine_ehuB ectoine/hydroxyectoine ABC transporte 99.68
PRK10859 482 membrane-bound lytic transglycosylase F; Provision 99.66
COG0834275 HisJ ABC-type amino acid transport/signal transduc 99.6
TIGR03870246 ABC_MoxJ methanol oxidation system protein MoxJ. T 99.6
PRK09959 1197 hybrid sensory histidine kinase in two-component r 99.59
TIGR02285268 conserved hypothetical protein. Members of this fa 99.56
PF00060148 Lig_chan: Ligand-gated ion channel; InterPro: IPR0 99.55
PRK09959 1197 hybrid sensory histidine kinase in two-component r 99.52
cd00134218 PBPb Bacterial periplasmic transport systems use m 99.49
TIGR03871232 ABC_peri_MoxJ_2 quinoprotein dehydrogenase-associa 99.46
smart00062219 PBPb Bacterial periplasmic substrate-binding prote 99.43
smart00079134 PBPe Eukaryotic homologues of bacterial periplasmi 98.97
COG4623 473 Predicted soluble lytic transglycosylase fused to 98.78
PRK00489287 hisG ATP phosphoribosyltransferase; Reviewed 98.05
PF1061365 Lig_chan-Glu_bd: Ligated ion channel L-glutamate- 97.88
TIGR01098254 3A0109s03R phosphate/phosphite/phosphonate ABC tra 97.59
TIGR03431288 PhnD phosphonate ABC transporter, periplasmic phos 96.36
PF0788579 Ion_trans_2: Ion channel; InterPro: IPR013099 This 94.97
PRK11553314 alkanesulfonate transporter substrate-binding subu 93.63
KOG1419 654 consensus Voltage-gated K+ channel KCNQ [Inorganic 92.63
KOG3713477 consensus Voltage-gated K+ channel KCNB/KCNC [Inor 85.19
TIGR01729300 taurine_ABC_bnd taurine ABC transporter, periplasm 84.55
PF14503232 YhfZ_C: YhfZ C-terminal domain; PDB: 2OZZ_B. 82.7
PF12974243 Phosphonate-bd: ABC transporter, phosphonate, peri 81.65
>KOG1054 consensus Glutamate-gated AMPA-type ion channel receptor subunit GluR2 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=3.2e-49  Score=382.72  Aligned_cols=319  Identities=18%  Similarity=0.290  Sum_probs=264.1

Q ss_pred             ccceEEeecCC--CCCCceEEeeHHHHHHHHh-cCCceEEEEe----hhh----------hhhhhccccccCCceeEEEe
Q 040220            6 GKFVKVKFSDN--PYENEYDGFCIELYYESQL-ACKGISILFF----FLQ----------LMMRIRHEENFLRNYDSVVG   68 (370)
Q Consensus         6 ~Pfv~~~~~~~--~~~~~~~G~~idl~~~la~-lg~~~~i~~~----~~~----------li~~~~~~~L~~g~~Diai~   68 (370)
                      -|||++|.+-.  .++++|.||+|||+.+||+ .|.+|++.+.    |..          |+|+     |..|++|+|++
T Consensus       427 spyvm~kkn~~~~egn~ryEGyCvdLa~~iAkhi~~~Y~l~iv~dgkyGardaD~k~WnGMvGe-----Lv~grAdiavA  501 (897)
T KOG1054|consen  427 SPYVMLKKNHEQLEGNERYEGYCVDLAAEIAKHIGIKYKLFIVGDGKYGARDADTKIWNGMVGE-----LVYGRADIAVA  501 (897)
T ss_pred             CchhHHHhhHHHhcCCcccceeHHHHHHHHHHhcCceEEEEEecCCcccccCCCcccccchhHH-----HhcCccceEEe
Confidence            48999965544  4568999999999999999 9888886543    221          7777     99999999999


Q ss_pred             cccccccccceeeecccccccceEEEEeCCCC--cCcceecccCchHHHHHHHHHHHHHHHHHHhccccCCCCCCC----
Q 040220           69 DATILADRAKIVEFTQPCAESRLSMIVPAKTE--ESAWRFMKPCTWEMWVVTDAILVNTRFVVWFPEHQRNSEFNG----  142 (370)
Q Consensus        69 ~~tit~eR~~~vdFS~P~~~~~~~ilv~~~~~--~~~~~~l~PF~~~vW~~il~~~~~~~~~~~~~~r~~~~~~~~----  142 (370)
                      ++|||.+|++++|||.|++..|++|++++|+.  .+.++|+.|+..++|+|++.+.+.++.++++..|+++.+++.    
T Consensus       502 pLTIt~~REeviDFSKPfMslGISIMIKKPqKsk~gVFSFldPLa~eIWm~ivfaYiGVSvvlFLVSrFSPYEwh~Ee~~  581 (897)
T KOG1054|consen  502 PLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEFE  581 (897)
T ss_pred             eeeeehhhhhhhccccchhhcCeEEEEeCcccCCCCeeeecchhHHHHHHHHHHHHhcceEEEEEEeccCchheeccccc
Confidence            99999999999999999999999999999974  569999999999999999999999999999999998866431    


Q ss_pred             --C-----C--CCCccchHHHHHHHhHhccCccceeeeeeccccCccccCcccchhhHHHHHHHHHHHHHHHHHhhcCCc
Q 040220          143 --P-----R--KDQIGTALWFNFSSILFAYGKEHVLHFIIMVNWKPIFGGRIDSNLTRLVVVVWLFVVLILTSSYTASPS  213 (370)
Q Consensus       143 --~-----~--~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~l~~~w~~~~lil~~~Yta~L~  213 (370)
                        +     +  ..++.+++||+++++++|+.              |   ..||+.+||++.++||||++|++++|||||+
T Consensus       582 rg~~t~~~~~NeFgifNsLWFsLgAFMQQG~--------------D---I~PRslSGRIvggvWWFFTlIIiSSYTANLA  644 (897)
T KOG1054|consen  582 RGRFTPSDPPNEFGIFNSLWFSLGAFMQQGC--------------D---ISPRSLSGRIVGGVWWFFTLIIISSYTANLA  644 (897)
T ss_pred             cCCCCCCCCCccchhhHHHHHHHHHHHhcCC--------------C---CCccccccceeccchhhhhhhhhhhhhhHHH
Confidence              1     1  13477999999999997653              3   4589999999999999999999999999999


Q ss_pred             cccccccCCC------------CCeEeeeCChhHHHHHH-----hc----------------CChHHHHHHhh--ccccc
Q 040220          214 PMLTVQPLRP------------NPKVACDRDSFVRNYLQ-----NF----------------GSDYNYQGEFG--SNHIA  258 (370)
Q Consensus       214 s~Lt~~~~~~------------~~~vg~~~~s~~~~~l~-----~~----------------~~~~~~~~~l~--~g~~~  258 (370)
                      |+||++++.+            ...+|+..+....++++     .|                .+..|++++++  +|+++
T Consensus       645 AFLTvErMvsPIESaEDLAkQteIaYGt~~~GSTkeFFr~Skiavy~kMW~yM~SaepsVFv~t~aeGv~rVRksKGkyA  724 (897)
T KOG1054|consen  645 AFLTVERMVSPIESAEDLAKQTEIAYGTLDSGSTKEFFRRSKIAVYEKMWTYMKSAEPSVFVRTTAEGVARVRKSKGKYA  724 (897)
T ss_pred             HHHhHHhhcCcchhHHHHhhcceeeeeecCCCchHHHHhhhhHHHHHHHHHHHhcCCcceeeehhhhHHHHHHhcCCceE
Confidence            9999998877            45677776665555554     22                34667777775  56777


Q ss_pred             c---cchhHHHHh-hcccceEEcCCCCCccceeee---CCcchHHHHHHHHHhhhcCchhHHHHhhcCCC----------
Q 040220          259 G---PPYEKVFVS-QYCRIYAATTPTYGFGGLGFL---SSPIAADFSEAILKLSENKKLKSLEYNEKELE----------  321 (370)
Q Consensus       259 a---~~~~~~~~~-~~c~~~~~~~~~~~~~~~~~a---~spl~~~in~~i~~l~e~G~~~~l~~~w~~~~----------  321 (370)
                      +   ....+|..+ ++|+ -..+|..+...+||+|   +|.|++.+|.++++|.|.|.+++|++|||=+.          
T Consensus       725 fLLEsTmNey~eqRkPCD-TMKVGgNLds~GYGiATp~Gsslr~~vNLAvLkL~E~G~LdKLkNKWWYDkGeC~sg~~ds  803 (897)
T KOG1054|consen  725 FLLESTMNEYIEQRKPCD-TMKVGGNLDSKGYGIATPKGSSLRNAVNLAVLKLNEQGLLDKLKNKWWYDKGECGSGGGDS  803 (897)
T ss_pred             eehHhhhhhhhhccCCcc-ceecccccCCcceeecCCCCcccccchhhhhhhhcccchHHHhhhhhcccccccCCCCCCC
Confidence            7   234455554 4698 6677788899999999   99999999999999999999999999998443          


Q ss_pred             ----CCcceeccchhHHhHhhhh--------heeeeec
Q 040220          322 ----PPGELYRLLGLLMYMSGAL--------SRWEYVD  347 (370)
Q Consensus       322 ----~~l~l~~l~G~f~~l~~g~--------~~~~~~~  347 (370)
                          .+|++.+++|+|++|.+|+        .||.|..
T Consensus       804 ~~ktsaLsLSnVAGvFYIL~gGl~laMlvALiEF~yks  841 (897)
T KOG1054|consen  804 KDKTSALSLSNVAGVFYILVGGLGLAMLVALIEFCYKS  841 (897)
T ss_pred             CcchhhcchhhccceeeeehhhHHHHHHHHHHHHHHHh
Confidence                2499999999999987775        4788763

>KOG4440 consensus NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG1052 consensus Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG1053 consensus Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>PRK10797 glutamate and aspartate transporter subunit; Provisional Back     alignment and domain information
>PF00497 SBP_bac_3: Bacterial extracellular solute-binding proteins, family 3; InterPro: IPR001638 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane Back     alignment and domain information
>PRK09495 glnH glutamine ABC transporter periplasmic protein; Reviewed Back     alignment and domain information
>PRK15007 putative ABC transporter arginine-biding protein; Provisional Back     alignment and domain information
>PRK15010 ABC transporter lysine/arginine/ornithine binding periplasmic protein; Provisional Back     alignment and domain information
>PRK11917 bifunctional adhesin/ABC transporter aspartate/glutamate-binding protein; Reviewed Back     alignment and domain information
>PRK11260 cystine transporter subunit; Provisional Back     alignment and domain information
>PRK15437 histidine ABC transporter substrate-binding protein HisJ; Provisional Back     alignment and domain information
>TIGR01096 3A0103s03R lysine-arginine-ornithine-binding periplasmic protein Back     alignment and domain information
>TIGR02995 ectoine_ehuB ectoine/hydroxyectoine ABC transporter solute-binding protein Back     alignment and domain information
>PRK10859 membrane-bound lytic transglycosylase F; Provisional Back     alignment and domain information
>COG0834 HisJ ABC-type amino acid transport/signal transduction systems, periplasmic component/domain [Amino acid transport and metabolism / Signal transduction mechanisms] Back     alignment and domain information
>TIGR03870 ABC_MoxJ methanol oxidation system protein MoxJ Back     alignment and domain information
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional Back     alignment and domain information
>TIGR02285 conserved hypothetical protein Back     alignment and domain information
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory Back     alignment and domain information
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional Back     alignment and domain information
>cd00134 PBPb Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and inorganic ions Back     alignment and domain information
>TIGR03871 ABC_peri_MoxJ_2 quinoprotein dehydrogenase-associated probable ABC transporter substrate-binding protein Back     alignment and domain information
>smart00062 PBPb Bacterial periplasmic substrate-binding proteins Back     alignment and domain information
>smart00079 PBPe Eukaryotic homologues of bacterial periplasmic substrate binding proteins Back     alignment and domain information
>COG4623 Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK00489 hisG ATP phosphoribosyltransferase; Reviewed Back     alignment and domain information
>PF10613 Lig_chan-Glu_bd: Ligated ion channel L-glutamate- and glycine-binding site; InterPro: IPR019594 This entry, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and binds L-glutamate and glycine [, ] Back     alignment and domain information
>TIGR01098 3A0109s03R phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein Back     alignment and domain information
>TIGR03431 PhnD phosphonate ABC transporter, periplasmic phosphonate binding protein Back     alignment and domain information
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria [] Back     alignment and domain information
>PRK11553 alkanesulfonate transporter substrate-binding subunit; Provisional Back     alignment and domain information
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR01729 taurine_ABC_bnd taurine ABC transporter, periplasmic binding protein Back     alignment and domain information
>PF14503 YhfZ_C: YhfZ C-terminal domain; PDB: 2OZZ_B Back     alignment and domain information
>PF12974 Phosphonate-bd: ABC transporter, phosphonate, periplasmic substrate-binding protein ; PDB: 3N5L_B 3QUJ_C 3P7I_A 3QK6_A 3S4U_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query370
3kg2_A823 Glutamate receptor 2; ION channel, membrane protei 6e-38
1yae_A312 Glutamate receptor, ionotropic kainate 2; kainate 9e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-05
3g3k_A259 Glutamate receptor, ionotropic kainate 2; membrane 1e-04
2v3u_A265 Glutamate receptor delta-2 subunit; postsynaptic m 2e-04
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus} Length = 823 Back     alignment and structure
 Score =  143 bits (362), Expect = 6e-38
 Identities = 61/376 (16%), Positives = 115/376 (30%), Gaps = 86/376 (22%)

Query: 8   FVKVKFSDNPYENE--YDGFCIELYYE--SQLACKGISILFFFLQLMMRIRH-------- 55
           +V +K +         Y+G+C++L  E       K    +    +   R           
Sbjct: 396 YVMMKANHAALAGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMV 455

Query: 56  EENFLRNYDSVVGDATILADRAKIVEFTQPCAESRLSMIV--PAKTEESAWRFMKPCTWE 113
            E      D  +   TI   R ++++F++P     +S+++  P K++   + F+ P  +E
Sbjct: 456 GELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYE 515

Query: 114 MWVVTDAILVNTRFVVWF-----PEHQRNSEFNGPRKDQ---------IGTALWFNFSSI 159
           +W+      +    V++      P      EF   R+ Q         I  +LWF+  + 
Sbjct: 516 IWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEFEDGRETQSSESTNEFGIFNSLWFSLGAF 575

Query: 160 LFAYGKEHVLHFIIMVNWKPIFGGRIDSNLTRLVVVVWLFVVLILTSSYTASPSPMLTVQ 219
           +   G +                    S   R+V  VW F  LI+ SSYTA+ +  LTV+
Sbjct: 576 MQQ-GADISPR----------------SLSGRIVGGVWWFFTLIIISSYTANLAAFLTVE 618

Query: 220 PLRPNP------------KVACDRDSFVRNYLQN-----------FGSDYNYQGEFGSNH 256
            +                          + + +            +           +  
Sbjct: 619 RMVSPIESAEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTA 678

Query: 257 ---------------IAGPPYEKVFVSQYCRIYAATTPTYGFGGLGF---LSSPIAADFS 298
                          +      +    +               G G      S +    +
Sbjct: 679 EGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGTPVN 738

Query: 299 EAILKLSENKKLKSLE 314
            A+LKLSE   L  L+
Sbjct: 739 LAVLKLSEQGLLDKLK 754
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1 Length = 312 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ... Length = 259 Back     alignment and structure
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A Length = 265 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query370
3kg2_A823 Glutamate receptor 2; ION channel, membrane protei 100.0
1yae_A312 Glutamate receptor, ionotropic kainate 2; kainate 99.88
1pb7_A292 N-methyl-D-aspartate receptor subunit 1; ligand bi 99.87
4h5g_A243 Amino acid ABC superfamily ATP binding cassette tr 99.87
4gvo_A243 LMO2349 protein; structural genomics, IDP05245, L- 99.87
3g3k_A259 Glutamate receptor, ionotropic kainate 2; membrane 99.87
2a5s_A284 N-methyl-D-aspartate receptor nmdar2A subunit, NMD 99.85
2rc8_A294 Glutamate [NMDA] receptor subunit 3A; membrane pro 99.84
3i6v_A232 Periplasmic His/Glu/Gln/Arg/opine family-binding; 99.84
3kzg_A237 Arginine 3RD transport system periplasmic binding 99.82
3k4u_A245 Binding component of ABC transporter; structural g 99.81
2v3u_A265 Glutamate receptor delta-2 subunit; postsynaptic m 99.81
3hv1_A268 Polar amino acid ABC uptake transporter substrate 99.8
4f3p_A249 Glutamine-binding periplasmic protein; ssgcid, str 99.8
1mqi_A263 Glutamate receptor 2; GLUR2, ligand binding core, 99.8
3kbr_A239 Cyclohexadienyl dehydratase; pseudomonas aeruginos 99.8
3tql_A227 Arginine-binding protein; transport and binding pr 99.79
3del_B242 Arginine binding protein; alpha and beta protein ( 99.79
1ii5_A233 SLR1257 protein; membrane protein; HET: GLU; 1.60A 99.78
1lst_A239 Lysine, arginine, ornithine-binding protein; amino 99.77
3h7m_A234 Sensor protein; histidine kinase sensor domain, ki 99.77
1wdn_A226 GLNBP, glutamine binding protein; closed form, com 99.77
2y7i_A229 STM4351; arginine-binding protein; HET: ARG; 1.90A 99.76
4eq9_A246 ABC transporter substrate-binding protein-amino A 99.76
2iee_A271 ORF2, probable ABC transporter extracellular-bindi 99.75
4dz1_A259 DALS D-alanine transporter; D-alanine binding, per 99.74
3mpk_A267 Virulence sensor protein BVGS; venus flytrap, sens 99.74
3qax_A268 Probable ABC transporter arginine-binding protein; 99.73
4i62_A269 Amino acid ABC transporter, periplasmic amino ACI 99.72
2yln_A283 Putative ABC transporter, periplasmic binding Pro 99.71
2vha_A287 Periplasmic binding transport protein; periplasmic 99.71
2pyy_A228 Ionotropic glutamate receptor bacterial homologue; 99.7
1xt8_A292 Putative amino-acid transporter periplasmic solut 99.7
2pvu_A272 ARTJ; basic amino acid binding protein, ABC transp 99.69
2yjp_A291 Putative ABC transporter, periplasmic binding Pro 99.69
2q88_A257 EHUB, putative ABC transporter amino acid-binding 99.68
2v25_A259 Major cell-binding factor; antigen, adhesin, aspar 99.53
2ozz_A231 Hypothetical protein YHFZ; alpha-beta structure, s 98.5
3p7i_A321 PHND, subunit of alkylphosphonate ABC transporter; 97.29
2k1e_A103 Water soluble analogue of potassium channel, KCSA; 97.2
3n5l_A310 Binding protein component of ABC phosphonate TRAN; 97.14
2ih3_C122 Voltage-gated potassium channel; ION channel D-ami 97.12
3eff_K139 Voltage-gated potassium channel; FULL length KCSA, 96.98
2a9h_A155 Voltage-gated potassium channel; potassium channel 96.88
4h33_A137 LMO2059 protein; bilayers, KVLM, lipidic cubic pha 96.4
2x26_A308 Periplasmic aliphatic sulphonates-binding protein; 96.26
3ldc_A82 Calcium-gated potassium channel MTHK; transmembran 95.64
3pjs_K166 KCSA, voltage-gated potassium channel; ION channel 95.16
3ouf_A97 Potassium channel protein; ION channel, membrane, 95.05
2q67_A114 Potassium channel protein; inverted teepee, helix 94.95
3vou_A148 ION transport 2 domain protein, voltage-gated SOD 94.85
1orq_C223 Potassium channel; voltage-dependent, KVAP, FAB co 94.83
1p7b_A333 Integral membrane channel and cytosolic domains; t 94.36
3un6_A341 Hypothetical protein saouhsc_00137; structural gen 93.99
3uif_A348 Sulfonate ABC transporter, periplasmic sulfonate- 93.66
3ksx_A324 Nitrate transport protein; SSUA, alkanesulfonate-b 93.65
1xl4_A301 Inward rectifier potassium channel; integral membr 93.46
3ix1_A302 N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine 93.27
3qsl_A346 Putative exported protein; unknown, structural gen 92.83
2qks_A321 KIR3.1-prokaryotic KIR channel chimera; G-protein 92.47
3beh_A355 MLL3241 protein; transmembrane protein, membrane p 92.43
2r9r_B514 Paddle chimera voltage gated potassium channel KV; 87.22
1lnq_A336 MTHK channels, potassium channel related protein; 86.47
4gx0_A 565 TRKA domain protein; membrane protein, ION channel 82.87
4ddd_A327 Immunogenic protein; ssgcid, structural genomics, 82.46
3ukm_A280 Potassium channel subfamily K member 1; membrane p 81.94
2f5x_A312 BUGD; periplasmic binding protein, transport prote 80.4
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus} Back     alignment and structure
Probab=100.00  E-value=2.6e-43  Score=375.75  Aligned_cols=327  Identities=18%  Similarity=0.281  Sum_probs=253.4

Q ss_pred             CCCccceEEeecCC--CCCCceEEeeHHHHHHHHh-cCCceEEEE-e-------------hhhhhhhhccccccCCceeE
Q 040220            3 TSFGKFVKVKFSDN--PYENEYDGFCIELYYESQL-ACKGISILF-F-------------FLQLMMRIRHEENFLRNYDS   65 (370)
Q Consensus         3 ~~~~Pfv~~~~~~~--~~~~~~~G~~idl~~~la~-lg~~~~i~~-~-------------~~~li~~~~~~~L~~g~~Di   65 (370)
                      ...|||++.+.+.+  ++++++.||++||++++++ ||+++++.. .             +..++++     |.+|++|+
T Consensus       391 ~~~~P~~~~~~~~~~~~~~~~~~G~~~dl~~~~a~~l~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~-----l~~~~~D~  465 (823)
T 3kg2_A          391 ILESPYVMMKANHAALAGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGE-----LVYGKADI  465 (823)
T ss_dssp             CCCTTTSEECTTGGGCCGGGGEESHHHHHHHHHHHHHTCCEEEEECSSCCCCCBCTTTCCBCHHHHH-----HHTTSCSE
T ss_pred             ecCCCcEEEecCccccCCCCceEEEHHHHHHHHHHHcCCcEEEEEccCCcccccCCCCCchhhHHHh-----hccccCcE
Confidence            35799999832211  2346899999999999999 998887543 2             4448888     99999999


Q ss_pred             EEecccccccccceeeecccccccceEEEEeCCCC--cCcceecccCchHHHHHHHHHHHHHHHHHHhccccCCCCCCCC
Q 040220           66 VVGDATILADRAKIVEFTQPCAESRLSMIVPAKTE--ESAWRFMKPCTWEMWVVTDAILVNTRFVVWFPEHQRNSEFNGP  143 (370)
Q Consensus        66 ai~~~tit~eR~~~vdFS~P~~~~~~~ilv~~~~~--~~~~~~l~PF~~~vW~~il~~~~~~~~~~~~~~r~~~~~~~~~  143 (370)
                      +++++++|++|.+.+|||.||+.++.++++|++..  .+++.|++||++++|++++++++++++++|+++|..+.++..+
T Consensus       466 ~~~~~~~t~~R~~~~dfs~py~~~~~~~~v~~~~~~~~~~~~fl~Pf~~~vW~~i~~~~~~~~~~l~~~~~~~p~~w~~~  545 (823)
T 3kg2_A          466 AIAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTE  545 (823)
T ss_dssp             ECSCCBCCHHHHTTEEECSCSEEECEEEEEECCCCCCCCGGGTTTTSCHHHHHHHHHHHHHHHTTGGGTC----------
T ss_pred             EecceecchhheeeEEeccchhhCCEEEEEECCCcccccchHhhcCCchhHHHHHHHHHHHHHHHHHHHHhcChhhccCc
Confidence            99999999999999999999999999999999863  5688999999999999999999999999999999765433211


Q ss_pred             C--------------CCCccchHHHHHHHhHhccCccceeeeeeccccCccccCcccchhhHHHHHHHHHHHHHHHHHhh
Q 040220          144 R--------------KDQIGTALWFNFSSILFAYGKEHVLHFIIMVNWKPIFGGRIDSNLTRLVVVVWLFVVLILTSSYT  209 (370)
Q Consensus       144 ~--------------~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~l~~~w~~~~lil~~~Yt  209 (370)
                      .              ..++.+++|++++++++|+.                 ...|++.++|+++++||+++++++++|+
T Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-----------------~~~p~~~~~R~~~~~w~~~~lil~~~Yt  608 (823)
T 3kg2_A          546 EFEDGRETQSSESTNEFGIFNSLWFSLGAFMQQGA-----------------DISPRSLSGRIVGGVWWFFTLIIISSYT  608 (823)
T ss_dssp             -------------CHHHHHHHHHHHTTTTSCC-----------------------CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccHHHHHHHHHHHHHhcCC-----------------CcCCcchhhhhHHHHHHHHHHHHHHHHH
Confidence            1              11266889999999886654                 1458999999999999999999999999


Q ss_pred             cCCccccccccCCC------------CCeEeeeCChhHHHHHHh---------------------cCChHHHHHHhh--c
Q 040220          210 ASPSPMLTVQPLRP------------NPKVACDRDSFVRNYLQN---------------------FGSDYNYQGEFG--S  254 (370)
Q Consensus       210 a~L~s~Lt~~~~~~------------~~~vg~~~~s~~~~~l~~---------------------~~~~~~~~~~l~--~  254 (370)
                      |+|+|+||.+++.+            ..++|+..++...++++.                     +.+.++++++++  .
T Consensus       609 a~L~s~Lt~~~~~~~I~s~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  688 (823)
T 3kg2_A          609 ANLAAFLTVERMVSPIESAEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSK  688 (823)
T ss_dssp             HHHHHHHHHHHHCCCCCSSHHHHHCCSSEEECBSSSHHHHHHHHCCCHHHHHHHHHHHHCSSCCCBSSHHHHHHHHHTTT
T ss_pred             HHHHHHhcccccCCCCCCHHHHhhCCCeeEEEEeCCcHHHHHHhccchHHHHHHHHHHhcCCccccCCHHHHHHHHhccC
Confidence            99999999877655            245787766655555541                     247889999996  4


Q ss_pred             ccccc---cchhHHHHhhc-ccceEEcCCCCCccceeee---CCcchHHHHHHHHHhhhcCchhHHHHhhcCCC------
Q 040220          255 NHIAG---PPYEKVFVSQY-CRIYAATTPTYGFGGLGFL---SSPIAADFSEAILKLSENKKLKSLEYNEKELE------  321 (370)
Q Consensus       255 g~~~a---~~~~~~~~~~~-c~~~~~~~~~~~~~~~~~a---~spl~~~in~~i~~l~e~G~~~~l~~~w~~~~------  321 (370)
                      |+.++   .+..+|..+++ |+ +.++++.+...+||++   +|||++.+|++|++|+|+|++++|+++|+.+.      
T Consensus       689 ~~~A~~~~~~~~~y~~~~~~c~-l~~v~~~~~~~~~~~~~~k~spl~~~~~~~il~l~e~G~~~~~~~~w~~~~~~c~~~  767 (823)
T 3kg2_A          689 GKYAYLLESTMNEYIEQRKPCD-TMKVGGNLDSKGYGIATPKGSSLGTPVNLAVLKLSEQGLLDKLKNKWWYDKGECGAK  767 (823)
T ss_dssp             TSEEEEEEHHHHHHHHTSTTCC-EEEESCCSSCEEECCEEETTCSSHHHHHHHHHHHHHTTHHHHHHHHHHTTSCSCSST
T ss_pred             CceEEEechHHHHHHHhcCCCc-eEEccccccccceeEeecCCChHHHHHHHHHHHHHhCCcHHHHHHhhCcCCCCCCCC
Confidence            55444   34556666655 88 8888999888888888   99999999999999999999999999998432      


Q ss_pred             --------CCcceeccchhHHhHhhhhh--------eeeeecCCCCC
Q 040220          322 --------PPGELYRLLGLLMYMSGALS--------RWEYVDPSNAS  352 (370)
Q Consensus       322 --------~~l~l~~l~G~f~~l~~g~~--------~~~~~~~~~~~  352 (370)
                              .+|+++++.|+|++|++|++        |++|...+.++
T Consensus       768 ~~~~~~~~~~L~l~~l~g~f~il~~g~~la~~vf~~E~~~~~~~~~~  814 (823)
T 3kg2_A          768 DSGSKEKTSALSLSNVAGVFYILVGGLGLAMLVALIEFCYKSRAEAK  814 (823)
T ss_dssp             TTSTTTCCCSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred             CccccccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHcchhhh
Confidence                    25899999999999988864        66665544444
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1 Back     alignment and structure
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A Back     alignment and structure
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A* Back     alignment and structure
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A Back     alignment and structure
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ... Back     alignment and structure
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A* Back     alignment and structure
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A Back     alignment and structure
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0 Back     alignment and structure
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0 Back     alignment and structure
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0 Back     alignment and structure
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A Back     alignment and structure
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311} Back     alignment and structure
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei} Back     alignment and structure
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ... Back     alignment and structure
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa} Back     alignment and structure
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0 Back     alignment and structure
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0 Back     alignment and structure
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A Back     alignment and structure
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P* Back     alignment and structure
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0 Back     alignment and structure
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A Back     alignment and structure
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp} Back     alignment and structure
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae} Back     alignment and structure
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis} Back     alignment and structure
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A Back     alignment and structure
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A Back     alignment and structure
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A* Back     alignment and structure
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae} Back     alignment and structure
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A Back     alignment and structure
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A* Back     alignment and structure
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme} Back     alignment and structure
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1 Back     alignment and structure
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A* Back     alignment and structure
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae} Back     alignment and structure
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A* Back     alignment and structure
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni} Back     alignment and structure
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1 Back     alignment and structure
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A Back     alignment and structure
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A Back     alignment and structure
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa} Back     alignment and structure
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... Back     alignment and structure
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} Back     alignment and structure
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 Back     alignment and structure
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A Back     alignment and structure
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli} Back     alignment and structure
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A Back     alignment and structure
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A Back     alignment and structure
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A Back     alignment and structure
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A Back     alignment and structure
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} Back     alignment and structure
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A Back     alignment and structure
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* Back     alignment and structure
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp} Back     alignment and structure
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus} Back     alignment and structure
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A* Back     alignment and structure
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* Back     alignment and structure
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125} Back     alignment and structure
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica} Back     alignment and structure
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} Back     alignment and structure
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Back     alignment and structure
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Back     alignment and structure
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A Back     alignment and structure
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* Back     alignment and structure
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis} Back     alignment and structure
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} Back     alignment and structure
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query370
d2a5sa1277 N-methyl-D-aspartate receptor subunit 1 {Rat (Ratt 99.92
d1pb7a_289 N-methyl-D-aspartate receptor subunit 1 {Rat (Ratt 99.91
d1mqia_260 Glutamate receptor ligand binding core {Rat (Rattu 99.87
d1wdna_223 Glutamine-binding protein {Escherichia coli [TaxId 99.86
d1ii5a_226 Glutamate receptor ligand binding core {Synechocys 99.84
d2f34a1246 Glutamate receptor ligand binding core {Rat (Rattu 99.82
d1xt8a1248 Putative amino-acid transporter CjaA {Campylobacte 99.81
d1lsta_238 Lysine-,arginine-,ornithine-binding (LAO) protein 99.77
d1r3jc_103 Potassium channel protein {Streptomyces coelicolor 97.31
d1xl4a2116 Inward rectifier potassium channel kirbac3.1 {Magn 95.36
d2ozza1228 Hypothetical protein YhfZ {Shigella flexneri [TaxI 95.3
d1p7ba2116 Inward rectifier potassium channel Kirbac1.1 {Burk 94.81
d1lnqa280 Potassium channel-related protein MthK {Archaeon M 88.83
d2h8pc157 Potassium channel protein {Streptomyces coelicolor 82.38
>d2a5sa1 c.94.1.1 (A:7-142,A:145-285) N-methyl-D-aspartate receptor subunit 1 {Rat (Rattus norvegicus), subtype 2A [TaxId: 10116]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like II
superfamily: Periplasmic binding protein-like II
family: Phosphate binding protein-like
domain: N-methyl-D-aspartate receptor subunit 1
species: Rat (Rattus norvegicus), subtype 2A [TaxId: 10116]

Probab=99.92  E-value=9.4e-26  Score=208.78  Aligned_cols=187  Identities=16%  Similarity=0.232  Sum_probs=146.2

Q ss_pred             ceEEeeHHHHHHHHh-cCCceEEEEe------------hhhhhhhhccccccCCceeEEEecccccccccceeeeccccc
Q 040220           21 EYDGFCIELYYESQL-ACKGISILFF------------FLQLMMRIRHEENFLRNYDSVVGDATILADRAKIVEFTQPCA   87 (370)
Q Consensus        21 ~~~G~~idl~~~la~-lg~~~~i~~~------------~~~li~~~~~~~L~~g~~Diai~~~tit~eR~~~vdFS~P~~   87 (370)
                      ++.||+|||+++||+ ||++|++.+.            |..++++     |.+|++|++++++++|++|++.++||.||+
T Consensus        52 ~~~G~~iDl~~~ia~~lg~~~e~~~v~~~~~g~~~~~~w~~~l~~-----l~~g~~Di~i~~~tit~eR~~~v~Fs~Py~  126 (277)
T d2a5sa1          52 CCKGFCIDILKKLSRTVKFTYDLYLVTNGKHGKKVNNVWNGMIGE-----VVYQRAVMAVGSLTINEERSEVVDFSVPFV  126 (277)
T ss_dssp             EEESHHHHHHHHHHHHHTCCEEEEECCSSSSCCEETTEECHHHHH-----HHTTSCSEECSSCBCCHHHHTTEEECCCCE
T ss_pred             ceeeeHHHHHHHHHHHhCCCEEEEEccCCCcCccCCCCHHHHHhh-----hhcccEEEEEEccEeehhhhhhhcccCCce
Confidence            478999999999999 9999885431            4558888     999999999999999999999999999999


Q ss_pred             ccceEEEEeCCCC-cCcceecccCchHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCccchHHHHHHHhHhccCcc
Q 040220           88 ESRLSMIVPAKTE-ESAWRFMKPCTWEMWVVTDAILVNTRFVVWFPEHQRNSEFNGPRKDQIGTALWFNFSSILFAYGKE  166 (370)
Q Consensus        88 ~~~~~ilv~~~~~-~~~~~~l~PF~~~vW~~il~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~  166 (370)
                      ..+.+++++++.. .+.+.+.+|++.                                                      
T Consensus       127 ~~~~~ilv~k~~~~~~~~~~~~~~~~------------------------------------------------------  152 (277)
T d2a5sa1         127 ETGISVMVSRQVTGLSDKKFQRPHDY------------------------------------------------------  152 (277)
T ss_dssp             EECEEEEEETCCCSTTSHHHHSGGGS------------------------------------------------------
T ss_pred             ecceEEEEecCcccCChhHhcCcccc------------------------------------------------------
Confidence            9999999998763 233333322210                                                      


Q ss_pred             ceeeeeeccccCccccCcccchhhHHHHHHHHHHHHHHHHHhhcCCccccccccCCCCCeEeeeCChhHHHHHH------
Q 040220          167 HVLHFIIMVNWKPIFGGRIDSNLTRLVVVVWLFVVLILTSSYTASPSPMLTVQPLRPNPKVACDRDSFVRNYLQ------  240 (370)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~~~vg~~~~s~~~~~l~------  240 (370)
                                                                             ..+.++|+.+++...++++      
T Consensus       153 -------------------------------------------------------~~~~~~g~v~~~~~~~~~~~~~~~~  177 (277)
T d2a5sa1         153 -------------------------------------------------------SPPFRFGTVPNGSTERNIRNNYPYM  177 (277)
T ss_dssp             -------------------------------------------------------SSCCCEECCTTSHHHHHHHTTCHHH
T ss_pred             -------------------------------------------------------chheeeeccchhhHHHHHHHhhhhh
Confidence                                                                   1145667666666655544      


Q ss_pred             -------hcCChHHHHHHhhcccccc----cchhHHHHhhc--ccceEEc--CCCCCccceeee---CCcchHHHHHHHH
Q 040220          241 -------NFGSDYNYQGEFGSNHIAG----PPYEKVFVSQY--CRIYAAT--TPTYGFGGLGFL---SSPIAADFSEAIL  302 (370)
Q Consensus       241 -------~~~~~~~~~~~l~~g~~~a----~~~~~~~~~~~--c~~~~~~--~~~~~~~~~~~a---~spl~~~in~~i~  302 (370)
                             .+.+.++++++|.+|++|+    .+.+.|..++.  |+ +..+  +..+...+||++   ++||++.+|++|.
T Consensus       178 ~~~~~~~~~~~~~~~~~~l~~G~~Da~i~d~~~~~y~~~~~~~~~-l~~~~~~~~~~~~~ygia~~k~s~l~~~in~al~  256 (277)
T d2a5sa1         178 HQYMTRFNQRGVEDALVSLKTGKLDAFIYDAAVLNYKAGRDEGCK-LVTIGSGYIFATTGYGIALQKGSPWKRQIDLALL  256 (277)
T ss_dssp             HHHHGGGCCSSHHHHHHHHHTTSCSEEEEEHHHHHHHHHTCTTSC-EEEEECCCGGGCEEECCEEETTCTTHHHHHHHHH
T ss_pred             cceEEEecCCCHHHHHHHHHcCCcceecccHHHHHHHHhhCCCCc-EEEecCCCCcCcceEEEEEeCChHHHHHHHHHHH
Confidence                   2467789999999999999    34556666654  66 4444  334667788887   9999999999999


Q ss_pred             HhhhcCchhHHHHhhcCCCC
Q 040220          303 KLSENKKLKSLEYNEKELEP  322 (370)
Q Consensus       303 ~l~e~G~~~~l~~~w~~~~~  322 (370)
                      +|+++|.+++|.+|||+..|
T Consensus       257 ~l~~~G~~~~L~~KW~~g~~  276 (277)
T d2a5sa1         257 QFVGDGEMEELETLWLTGIC  276 (277)
T ss_dssp             HHHHHTHHHHHHHHHTCCCC
T ss_pred             HHHHCCHHHHHHhhhcCCCC
Confidence            99999999999999998876
>d1pb7a_ c.94.1.1 (A:) N-methyl-D-aspartate receptor subunit 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1mqia_ c.94.1.1 (A:) Glutamate receptor ligand binding core {Rat (Rattus norvegicus), GluR2 [TaxId: 10116]} Back     information, alignment and structure
>d1wdna_ c.94.1.1 (A:) Glutamine-binding protein {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ii5a_ c.94.1.1 (A:) Glutamate receptor ligand binding core {Synechocystis sp., GluR0 [TaxId: 1143]} Back     information, alignment and structure
>d2f34a1 c.94.1.1 (A:5-116,A:119-252) Glutamate receptor ligand binding core {Rat (Rattus norvegicus), GluR5 [TaxId: 10116]} Back     information, alignment and structure
>d1xt8a1 c.94.1.1 (A:10-257) Putative amino-acid transporter CjaA {Campylobacter jejuni [TaxId: 197]} Back     information, alignment and structure
>d1lsta_ c.94.1.1 (A:) Lysine-,arginine-,ornithine-binding (LAO) protein {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Back     information, alignment and structure
>d2ozza1 c.94.1.1 (A:1-228) Hypothetical protein YhfZ {Shigella flexneri [TaxId: 623]} Back     information, alignment and structure
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Back     information, alignment and structure
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure