Citrus Sinensis ID: 040287

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160--
Protein Sequence
MANCLMFMSQGGHFDAVNSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNEKVSTLTLSDTAPLVKKANSRRVLCLDLNLTPYENDLECHRLGSNKAAAPIVDCFL
Secondary Structure (PSIPRED)
ccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccHHcccccccccccccccccccHHHHHccccccccccEEEccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHccccccccccccccccccEEEEcccccccccHHHccccccccccccccccccccccccccccccccEEccccccEccccccccccccHcccccccccccccccccccccccccccccccEEEEcccccccccHHHHcccccccccccHEEEcc
Coil and Loop (DISEMBL)
MANCLMFmsqgghfdavnsvdmtAAGRvfecktcnrqfpsfqalgghrashkkprltdgtgggadtqqspakprthecsvcgleFAIGQALGGHMRRHRAVALhgnekvstltlsdtaplvkkansrrvlcldlnltpyendlechrlgsnkaaapivdcfl
Flexible Loop (DISEMBL)
MANCLMFMSQGGHFDAVNSVDMTAAGRVFECKTCNRQFPSfqalgghrashKKPRLTDGTGGGADTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHgnekvstltlsdtaplvkkansrrvLCLDLNLTPYENdlechrlgsnkaaapivdcfl
Low Complexity Region (SEG)
MANCLMFMSQGGHFDAVNSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLtdgtgggadtQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNEKVSTLTLSDTAPLVKKANSRRVLCLDLNLTPYENDLECHRLGSNKAAAPIVDCFL
Disordered region (IsUnstruct)
***CLMFMSQGGHFDAVNSVDMTAAGRVFECKTCNRQFPSFQA*********************************ECSVCGLEFAIGQALGGHMRRHRAVALHGNEKVSTLTLSDTAPLVKKANSRRVLCLDLNLTPYENDLECHRLGSNKAAAPIVDC**
Disordered Region (DISOPRED)
MANCLMF**************************CNRQFP**************************************CSVCGLEFAIGQALGG**************************************LDLNLTPYENDLECHRLG**KAAAPIVDCFL
Disordered Region (DISEMBL)
MANCLMFMSQGGHFDAVNSVDMTAAGRVFECKTCNRQFPSFQA*********************************ECSVCGLEFAIGQALGGHMRRHRAVALHGNEKVSTLTLSDTAPLVKKANSRRVLCLDLNLTPYENDLECHRLGSNKAAAPIVDCFL
Disordered Region (DISPRO)
MANCLMFMSQG**************GRVFECKTCNRQFPSFQAL*****************************RTHECSVCGLEFAIGQAL***********************************RRVLCLDLNLTPYENDLECHRLGSNKAAAPIVDCFL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MANCLMFMSQGGHFDAVNSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNEKVSTLTLSDTAPLVKKANSRRVLCLDLNLTPYENDLECHRLGSNKAAAPIVDCFL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	162	2.2.26 [Sep-21-2011]
Q9SLD4	178	Zinc finger protein ZAT11	no	no	0.876	0.797	0.455	1e-27
Q42410	162	Zinc finger protein ZAT12	no	no	0.814	0.814	0.482	2e-24
Q42453	168	Zinc finger protein ZAT7	no	no	0.796	0.767	0.445	2e-21
Q9LX85	164	Zinc finger protein ZAT8	no	no	0.790	0.780	0.427	6e-21
Q681X4	286	Zinc finger protein ZAT5	no	no	0.987	0.559	0.355	8e-21
Q9SSW0	193	Zinc finger protein AZF3	no	no	0.617	0.518	0.396	4e-14
Q9M202	288	Zinc finger protein ZAT9	no	no	0.716	0.402	0.380	3e-13
Q39092	267	Zinc finger protein ZAT1	no	no	0.438	0.265	0.493	3e-12
Q9SHD0	314	Zinc finger protein ZAT4	no	no	0.672	0.347	0.367	2e-11
Q96289	227	Zinc finger protein ZAT10	no	no	0.672	0.480	0.322	2e-10

>sp|Q9SLD4|ZAT11_ARATH Zinc finger protein ZAT11 OS=Arabidopsis thaliana GN=ZAT11 PE=2 SV=1

 Score =  122 bits (305), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 67/147 (45%), Positives = 86/147 (58%), Gaps = 5/147 (3%)

Query: 1   MANCLMFMSQGGHFDAV--NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTD 58
           +A CLM ++Q      +  N    +     FECKTCN++F SFQALGGHRASHKKP+LT 
Sbjct: 17  IAKCLMILAQTSMVKQIGLNQHTESHTSNQFECKTCNKRFSSFQALGGHRASHKKPKLTV 76

Query: 59  GTGGGADTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNEKVSTLTLSDTA 118
                            H+CS+C   F  GQALGGHMRRHR+        +S +  S   
Sbjct: 77  EQKDVKHLSNDYKGNHFHKCSICSQSFGTGQALGGHMRRHRSSMTVEPSFISPMIPS--M 134

Query: 119 PLVKK-ANSRRVLCLDLNLTPYENDLE 144
           P++K+  +S+R+L LDLNLTP ENDLE
Sbjct: 135 PVLKRCGSSKRILSLDLNLTPLENDLE 161

Probable transcription factor that may be involved in stress responses.
Arabidopsis thaliana (taxid: 3702)

>sp|Q42410|ZAT12_ARATH Zinc finger protein ZAT12 OS=Arabidopsis thaliana GN=ZAT12 PE=2 SV=1

 Score =  111 bits (278), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/143 (48%), Positives = 84/143 (58%), Gaps = 11/143 (7%)

Query: 2   ANCLMFMSQGGHFDAVNSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTG 61
           ANCLM +S+ G      +VD     RVF CKTC +QF SFQALGGHRASHKKP   D   
Sbjct: 16  ANCLMLLSRVGQ----ENVDGGDQKRVFTCKTCLKQFHSFQALGGHRASHKKPN-NDALS 70

Query: 62  GGADTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHR--AVALHGNEKVSTLTLSDTAP 119
            G        K  +H C +CG+EF +GQALGGHMRRHR  + A  G      L    T  
Sbjct: 71  SGL---MKKVKTSSHPCPICGVEFPMGQALGGHMRRHRNESGAAGGALVTRALLPEPTVT 127

Query: 120 LVKKANS-RRVLCLDLNLTPYEN 141
            +KK++S +RV CLDL+L   +N
Sbjct: 128 TLKKSSSGKRVACLDLSLGMVDN 150

Transcriptional repressor involved in light acclimation, cold and oxidative stress responses. May regulate a collection of transcripts involved in response to high-light, cold and oxidative stress.

Arabidopsis thaliana (taxid: 3702)

>sp|Q42453|ZAT7_ARATH Zinc finger protein ZAT7 OS=Arabidopsis thaliana GN=ZAT7 PE=2 SV=1

 Score =  101 bits (251), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/148 (44%), Positives = 82/148 (55%), Gaps = 19/148 (12%)

Query: 2   ANCLMFMSQGGHFDAVNSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTG 61
           A CLM +S+ G        D     RVF CKTC ++F SFQALGGHRASHKK   +D   
Sbjct: 17  AKCLMLLSRVGECGGGCGGD----ERVFRCKTCLKEFSSFQALGGHRASHKKLINSDNPS 72

Query: 62  GGADTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNEKV-------STLTL 114
                     K  +H C +CG++F +GQALGGHMRRHR      NEKV       S L  
Sbjct: 73  LLGSLSNKKTKT-SHPCPICGVKFPMGQALGGHMRRHR------NEKVSGSLVTRSFLPE 125

Query: 115 SDTAPLVKKANS-RRVLCLDLNLTPYEN 141
           + T   +KK +S +RV CLDL+L   E+
Sbjct: 126 TTTVTALKKFSSGKRVACLDLDLDSMES 153

Probable transcription factor involved in oxidative stress response.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LX85|ZAT8_ARATH Zinc finger protein ZAT8 OS=Arabidopsis thaliana GN=ZAT8 PE=2 SV=1

 Score =  100 bits (248), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 59/138 (42%), Positives = 79/138 (57%), Gaps = 10/138 (7%)

Query: 2   ANCLMFMSQGGHFDAVNSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKK-PRLTDGT 60
           A CLM +S+ G              RVF CKTC ++F SFQALGGHRASHKK    +D +
Sbjct: 16  AKCLMLLSRVGECGG------GGEKRVFRCKTCLKEFSSFQALGGHRASHKKLINSSDPS 69

Query: 61  GGGADTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNEKVSTLTLSDT--- 117
             G+ + +      +H C +CG+EF +GQALGGHMRRHR+        V+   L +T   
Sbjct: 70  LLGSLSNKKTKTATSHPCPICGVEFPMGQALGGHMRRHRSEKASPGTLVTRSFLPETTTV 129

Query: 118 APLVKKANSRRVLCLDLN 135
             L K ++ +RV CLDL+
Sbjct: 130 TTLKKSSSGKRVACLDLD 147

Probable transcription factor that may be involved in stress responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q681X4|ZAT5_ARATH Zinc finger protein ZAT5 OS=Arabidopsis thaliana GN=ZAT5 PE=2 SV=1

 Score = 99.4 bits (246), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 74/208 (35%), Positives = 97/208 (46%), Gaps = 48/208 (23%)

Query: 1   MANCLMFMSQGGHF---DAVNSVDM-------TAAGRVFECKTCNRQFPSFQALGGHRAS 50
           MA CL+ +++G      D  NS  +        ++  V+ECKTCNR F SFQALGGHRAS
Sbjct: 77  MAICLIMLARGTVLPSPDLKNSRKIHQKISSENSSFYVYECKTCNRTFSSFQALGGHRAS 136

Query: 51  HKKPR----------LTDGTGGGADTQQSP------------------AKPRTHECSVCG 82
           HKKPR          LT      ++  Q+                      + HECS+CG
Sbjct: 137 HKKPRTSTEEKTRLPLTQPKSSASEEGQNSHFKVSGSALASQASNIINKANKVHECSICG 196

Query: 83  LEFAIGQALGGHMRRHRAVALHGNEKVSTLTLSDTAPLVK--------KANSRRVLCLDL 134
            EF  GQALGGHMRRHR      +   +T  +S  +   +            R+ L LDL
Sbjct: 197 SEFTSGQALGGHMRRHRTAVTTISPVAATAEVSRNSTEEEIEINIGRSMEQQRKYLPLDL 256

Query: 135 NLTPYENDL-ECHRLGSNKAAAP-IVDC 160
           NL   E+DL E    G   +A P ++DC
Sbjct: 257 NLPAPEDDLRESKFQGIVFSATPALIDC 284

Probable transcription factor that may be involved in stress responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SSW0|AZF3_ARATH Zinc finger protein AZF3 OS=Arabidopsis thaliana GN=AZF3 PE=1 SV=1

 Score = 77.0 bits (188), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 44/111 (39%), Positives = 65/111 (58%), Gaps = 11/111 (9%)

Query: 1   MANCLMFMSQ-GGHFDAVNSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDG 59
           +A CLM +++ GG  D+V   +  +    ++C  C + F S+QALGGH+ASH+       
Sbjct: 50  LAFCLMLLARDGGDLDSVTVAEKPS----YKCGVCYKTFSSYQALGGHKASHRSL----- 100

Query: 60  TGGGADTQQSPAKP-RTHECSVCGLEFAIGQALGGHMRRHRAVALHGNEKV 109
            GGG + + +P+   ++H CSVCG  FA GQALGGH R H    +  +E V
Sbjct: 101 YGGGENDKSTPSTAVKSHVCSVCGKSFATGQALGGHKRCHYDGGVSNSEGV 151

Transcriptional repressor probably involved in abiotic stress responses. Binds DNA in a sequence-specific manner and can repress the transactivation activity of other transcription factors.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M202|ZAT9_ARATH Zinc finger protein ZAT9 OS=Arabidopsis thaliana GN=ZAT9 PE=2 SV=1

 Score = 74.3 bits (181), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/134 (38%), Positives = 71/134 (52%), Gaps = 18/134 (13%)

Query: 14  FDAVNSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDG-TGGGADTQQSP-- 70
           ++ +N    T  GR ++C+TC + F S+QALGGHRASHKK R+++  T   ++T+     
Sbjct: 161 YNKINRA--TTKGR-YKCETCGKVFKSYQALGGHRASHKKNRVSNNKTEQRSETEYDNVV 217

Query: 71  -AKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNEKVSTLTLSDTAPLVKKANSRRV 129
               R HEC +C   FA GQALGGH R H    L  N++            V +  S + 
Sbjct: 218 VVAKRIHECPICLRVFASGQALGGHKRSHGVGNLSVNQQ----------RRVHRNESVKQ 267

Query: 130 LCLDLNL-TPYEND 142
             +DLNL  P E D
Sbjct: 268 RMIDLNLPAPTEED 281

Probable transcription factor that may be involved in stress responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39092|ZAT1_ARATH Zinc finger protein ZAT1 OS=Arabidopsis thaliana GN=ZAT1 PE=2 SV=1

 Score = 71.2 bits (173), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 37/75 (49%), Positives = 47/75 (62%), Gaps = 4/75 (5%)

Query: 27  RVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRT---HECSVCGL 83
           + FEC+TC + F S+QALGGHRASHKK ++ +    G+D  +   K  T   HEC +C  
Sbjct: 158 KWFECETCEKVFKSYQALGGHRASHKK-KIAETDQLGSDELKKKKKKSTSSHHECPICAK 216

Query: 84  EFAIGQALGGHMRRH 98
            F  GQALGGH R H
Sbjct: 217 VFTSGQALGGHKRSH 231

Probable transcription factor that may be involved in stress responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SHD0|ZAT4_ARATH Zinc finger protein ZAT4 OS=Arabidopsis thaliana GN=ZAT4 PE=2 SV=1

 Score = 68.6 bits (166), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/117 (36%), Positives = 64/117 (54%), Gaps = 8/117 (6%)

Query: 29  FECKTCNRQFPSFQALGGHRASHKKPR--LTDGTGGGADTQQSPAKPRTHECSVCGLEFA 86
           F+C+TC + F S+QALGGHRASHKK +  +T       +      + + HEC +C   F 
Sbjct: 194 FKCETCGKVFKSYQALGGHRASHKKNKACMTKTEQVETEYVLGVKEKKVHECPICFRVFT 253

Query: 87  IGQALGGHMRRHRAVALHGNEKVSTLTLSDTAPLVKKANSRRVLCLDLNL-TPYEND 142
            GQALGGH R H +    G      L++S    + ++ + ++ + +DLNL  P E D
Sbjct: 254 SGQALGGHKRSHGSNIGAGR----GLSVSQIVQIEEEVSVKQRM-IDLNLPAPNEED 305

Probable transcription factor that may be involved in stress responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q96289|ZAT10_ARATH Zinc finger protein ZAT10 OS=Arabidopsis thaliana GN=ZAT10 PE=2 SV=1

 Score = 65.1 bits (157), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 67/127 (52%), Gaps = 18/127 (14%)

Query: 1   MANCLMFMSQGGHFDAVNSVDMTAAGRV-FECKTCNRQFPSFQALGGHRASHKKPRLTDG 59
           +A CLM +++    D        A  ++ ++C  C++ F S+QALGGH+ASH+K      
Sbjct: 55  LAFCLMLLAR----DNRQPPPPPAVEKLSYKCSVCDKTFSSYQALGGHKASHRKNLSQTL 110

Query: 60  TGGGAD---------TQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNEKVS 110
           +GGG D         +  +    ++H C++C   F  GQALGGH R H      GN  ++
Sbjct: 111 SGGGDDHSTSSATTTSAVTTGSGKSHVCTICNKSFPSGQALGGHKRCH----YEGNNNIN 166

Query: 111 TLTLSDT 117
           T ++S++
Sbjct: 167 TSSVSNS 173

Transcriptional repressor involved in abiotic stress responses. Can repress the stress responsive genes DREB1A and LTI78. Probably involved in jasmonate (JA) early signaling response. May regulate the expression of the JA biosynthesis gene LOX3 and control the expression of TIFY10A/JAZ1, a key repressor in the JA signaling cascade.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	162
255575128	190	nucleic acid binding protein, putative [	0.981	0.836	0.608	9e-55
224112835	179	predicted protein [Populus trichocarpa]	0.962	0.871	0.631	6e-51
224098312	177	predicted protein [Populus trichocarpa]	0.938	0.858	0.608	6e-47
225449611	176	PREDICTED: zinc finger protein ZAT12-lik	0.944	0.869	0.625	3e-46
356568969	175	PREDICTED: zinc finger protein ZAT11-lik	0.913	0.845	0.619	1e-44
351723355	180	uncharacterized protein LOC100500371 [Gl	0.919	0.827	0.597	1e-43
2346978	166	ZPT2-14 [Petunia x hybrida]	0.901	0.879	0.619	4e-43
1786134	176	PEThy;ZPT2-5 [Petunia x hybrida]	0.950	0.875	0.603	1e-42
373839318	178	Cys2/His2-type zinc finger protein [Chry	0.962	0.876	0.591	1e-42
388506426	180	unknown [Lotus japonicus]	0.938	0.844	0.578	2e-42

>gi|255575128|ref|XP_002528469.1| nucleic acid binding protein, putative [Ricinus communis] gi|223532145|gb|EEF33952.1| nucleic acid binding protein, putative [Ricinus communis]

 Score =  218 bits (554), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 109/179 (60%), Positives = 128/179 (71%), Gaps = 20/179 (11%)

Query: 1   MANCLMFMSQGGH------FDAVNSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKP 54
           MANCLM +SQG        F+A+   ++ ++ RVFECKTCNRQFPSFQALGGHRASHKKP
Sbjct: 15  MANCLMLLSQGREIVSFPSFEAMKGTNINSSNRVFECKTCNRQFPSFQALGGHRASHKKP 74

Query: 55  RLTDGTGGGADTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAV-----------AL 103
           RLT+G  G  +TQ SPAKP+THECS+CGLEFAIGQALGGHMRRHRA+             
Sbjct: 75  RLTNGDVGSLETQSSPAKPKTHECSICGLEFAIGQALGGHMRRHRAINNDSSSLSTPSPT 134

Query: 104 HGNEKVSTLTLSDTAPLVKKANSRRVLCLDLNLTPYENDLECHRLGSNKAAAPIVDCFL 162
              E ++        P++KK+NSRRVLCLDLNLTPYEND+E  RLG     AP+VDCFL
Sbjct: 135 SSAELMAVKPAGVAPPVMKKSNSRRVLCLDLNLTPYENDVELFRLGK---TAPMVDCFL 190

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112835|ref|XP_002316305.1| predicted protein [Populus trichocarpa] gi|222865345|gb|EEF02476.1| predicted protein [Populus trichocarpa] gi|355477194|gb|AES12473.1| C2H2-type zinc finger protein 1 [Populus trichocarpa]

 Score =  205 bits (521), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 108/171 (63%), Positives = 125/171 (73%), Gaps = 15/171 (8%)

Query: 1   MANCLMFMSQGGHFDAVNSVDM----TAAGRVFECKTCNRQFPSFQALGGHRASHKKPRL 56
           MANCLMF+S+G    +  S D      +  RVFECKTCNRQFPSFQALGGHRASHKKPRL
Sbjct: 15  MANCLMFLSKGRESYSFPSFDHAMSNISPARVFECKTCNRQFPSFQALGGHRASHKKPRL 74

Query: 57  TDGTGGGADTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNEKVSTLTLSD 116
             G G  +   QSPAKP+THECS+CGLEFAIGQALGGHMRRHRA AL+   +V  L    
Sbjct: 75  MGGEG--SFETQSPAKPKTHECSICGLEFAIGQALGGHMRRHRA-ALNDRNQVDPLNPPS 131

Query: 117 T-----APLVKKANSRRVLCLDLNLTPYENDLECHRLGSNKAAAPIVDCFL 162
           T      P+VK++NSRRVLCLDLNLTPYEND+E  +LG+    AP+V+CF 
Sbjct: 132 TDDQKAVPVVKRSNSRRVLCLDLNLTPYENDMELFKLGT---TAPMVNCFF 179

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224098312|ref|XP_002311150.1| predicted protein [Populus trichocarpa] gi|222850970|gb|EEE88517.1| predicted protein [Populus trichocarpa]

 Score =  191 bits (486), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 101/166 (60%), Positives = 119/166 (71%), Gaps = 14/166 (8%)

Query: 1   MANCLMFMSQGGHFDAVNSVDM----TAAGRVFECKTCNRQFPSFQALGGHRASHKKPRL 56
           MANCL+F+S+G    +  S D      +  RVFECKTCNR+FPSFQALGGHRASHKKP+L
Sbjct: 15  MANCLVFLSKGRESYSFPSFDHAINNNSPSRVFECKTCNRKFPSFQALGGHRASHKKPKL 74

Query: 57  TDGTGGGADTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNEKVSTLTLSD 116
             G G  +   QSPAKP+THECS+CGLEFAIGQALGGHMRRHRA     N+    L+   
Sbjct: 75  MGGEG--SFESQSPAKPKTHECSICGLEFAIGQALGGHMRRHRAALNDQNQLADPLSPPS 132

Query: 117 T-----APLVKKANSRRVLCLDLNLTPYENDLECHRLGSNKAAAPI 157
           +      P+VKK+NSRRVLCLDLNLTP END+E  +LG+   AAPI
Sbjct: 133 SDHKQVVPVVKKSNSRRVLCLDLNLTPNENDMELFKLGN---AAPI 175

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449611|ref|XP_002284111.1| PREDICTED: zinc finger protein ZAT12-like [Vitis vinifera]

 Score =  189 bits (481), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 105/168 (62%), Positives = 120/168 (71%), Gaps = 15/168 (8%)

Query: 1   MANCLMFMSQGGHFDAVNSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGT 60
           +ANCLM +S+G  +D++  V      RVFECKTCNRQFPSFQALGGHRASHKKPRL    
Sbjct: 16  IANCLMLLSRGTDYDSIARV----PSRVFECKTCNRQFPSFQALGGHRASHKKPRLMALN 71

Query: 61  GGG-ADTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNEKVSTLTLSDT-- 117
           G   A  Q SP KP+THECS+CGLEFAIGQALGGHMRRHRA A    + +S  T S +  
Sbjct: 72  GDDPAQLQSSPLKPKTHECSICGLEFAIGQALGGHMRRHRAAASGATQALSETTSSSSPP 131

Query: 118 ---APLVKKANSRRVLCLDLNLTPYEN-DLECHRLGSNKAAAPIVDCF 161
              APL+KK NSRRVLCLDLNLTP EN DL+  +LG     A +VDCF
Sbjct: 132 PPQAPLLKKPNSRRVLCLDLNLTPLENIDLQ-FQLGK---VASMVDCF 175

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568969|ref|XP_003552680.1| PREDICTED: zinc finger protein ZAT11-like [Glycine max]

 Score =  184 bits (467), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 96/155 (61%), Positives = 112/155 (72%), Gaps = 7/155 (4%)

Query: 1   MANCLMFMSQGGHFDAVNSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGT 60
           MANCLM +S+G  F+A  S   + + RVFECKTCNRQFPSFQALGGHRASHKKPRL  G 
Sbjct: 12  MANCLMLLSRGSEFEATYS-STSMSNRVFECKTCNRQFPSFQALGGHRASHKKPRLMAGD 70

Query: 61  GGGADTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGN------EKVSTLTL 114
             G     SP KP+THECS+CGLEFAIGQALGGHMRRHRA  L+GN         S+   
Sbjct: 71  IEGQLLHDSPPKPKTHECSICGLEFAIGQALGGHMRRHRAANLNGNVHNSTATSSSSGGS 130

Query: 115 SDTAPLVKKANSRRVLCLDLNLTPYENDLECHRLG 149
           S  +   KKA+++RVL LDLNLTP+ENDLE  ++G
Sbjct: 131 SFDSSPKKKADNKRVLVLDLNLTPFENDLEFLKIG 165

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723355|ref|NP_001237020.1| uncharacterized protein LOC100500371 [Glycine max] gi|255630149|gb|ACU15428.1| unknown [Glycine max]

 Score =  181 bits (458), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 95/159 (59%), Positives = 113/159 (71%), Gaps = 10/159 (6%)

Query: 1   MANCLMFMSQGG-HFDAVNSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDG 59
           MANCLM +S+GG  F+A  S   +   RVFECKTCNRQFPSFQ LGGHRASHKKPRL  G
Sbjct: 12  MANCLMLLSRGGDQFEATYSSSTSMNNRVFECKTCNRQFPSFQTLGGHRASHKKPRLMAG 71

Query: 60  TG-GGADTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNEKVSTLTLSDTA 118
               G     SP KP+THECS+CGLEFAIGQALGGHMRRHRA  L+GN   ++ T + ++
Sbjct: 72  DNIEGQLLHDSPPKPKTHECSICGLEFAIGQALGGHMRRHRAANLNGNNVYNSATATSSS 131

Query: 119 PLV--------KKANSRRVLCLDLNLTPYENDLECHRLG 149
                      KKA+++RVL LDLNLTP+ENDLE  ++G
Sbjct: 132 SGGSSFDSSPKKKADNKRVLVLDLNLTPFENDLEFLKIG 170

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2346978|dbj|BAA21923.1| ZPT2-14 [Petunia x hybrida]

 Score =  179 bits (454), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 101/163 (61%), Positives = 111/163 (68%), Gaps = 17/163 (10%)

Query: 1   MANCLMFMS-QGGHFDAVNSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDG 59
           MAN LM  S Q  HF   N++   +  RVFECKTCNRQF SFQALGGHRASHKKPRL   
Sbjct: 20  MANYLMLFSHQENHF---NTMMDNSPSRVFECKTCNRQFSSFQALGGHRASHKKPRLMGE 76

Query: 60  TGGGADTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNEKVSTLTLSDTAP 119
                 T  SP KP+THECS+CGLEF IGQALGGHMRRHRAV    N +V+        P
Sbjct: 77  LNFQLPT--SPPKPKTHECSICGLEFPIGQALGGHMRRHRAVMNENNLQVT--------P 126

Query: 120 LVKKANSRRVLCLDLNLTPYENDLECHRLGSNKAAAPIVDCFL 162
           +VKK+NSRRVLCLDLNLTP END    +LG    AA IVDC L
Sbjct: 127 VVKKSNSRRVLCLDLNLTPLENDNLEFKLGK---AARIVDCLL 166

Source: Petunia x hybrida

Species: Petunia x hybrida

Genus: Petunia

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1786134|dbj|BAA19110.1| PEThy;ZPT2-5 [Petunia x hybrida]

 Score =  177 bits (450), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 99/164 (60%), Positives = 112/164 (68%), Gaps = 10/164 (6%)

Query: 1   MANCLMFMSQGG--HFDAVNSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTD 58
           MAN LM +S+    HFD    ++ ++  RVFECKTCNRQF SFQALGGHRASHKKPRL  
Sbjct: 21  MANYLMLLSRQANEHFDK--KMNNSSTSRVFECKTCNRQFSSFQALGGHRASHKKPRLMG 78

Query: 59  GTGGGADTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNEKVSTLTLSDTA 118
                    + P K +THECS+CGLEFAIGQALGGHMRRHRAV    N+K         A
Sbjct: 79  ELHNLQLFHELP-KRKTHECSICGLEFAIGQALGGHMRRHRAVI---NDKNLQAPDDQHA 134

Query: 119 PLVKKANSRRVLCLDLNLTPYENDLECHRLGSNKAAAPIVDCFL 162
           P+VKKAN RR+L LDLNLTP ENDLE     SN   AP+VDCFL
Sbjct: 135 PVVKKANGRRILSLDLNLTPLENDLEFDLRKSN--TAPMVDCFL 176

Source: Petunia x hybrida

Species: Petunia x hybrida

Genus: Petunia

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|373839318|gb|AEY76110.1| Cys2/His2-type zinc finger protein [Chrysanthemum x morifolium]

 Score =  177 bits (450), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 97/164 (59%), Positives = 111/164 (67%), Gaps = 8/164 (4%)

Query: 1   MANCLMFMSQGGHFDAVNSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDG- 59
           MAN LM +S+G     ++S    +  RVFECKTCNRQFPSFQALGGHRASHKKPRL DG 
Sbjct: 21  MANYLMLLSRGN--TNMDSYQDDSVSRVFECKTCNRQFPSFQALGGHRASHKKPRLVDGD 78

Query: 60  -TGGGADTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNEKVSTLTLSDTA 118
            T    DT     KP+TH+CS+CG+EFAIGQALGGHMRRHRA     N   ++L L  + 
Sbjct: 79  MTSHHHDTALL-IKPKTHKCSICGVEFAIGQALGGHMRRHRAATTTENH--ASLPLDLST 135

Query: 119 PLVKKANSRRVLCLDLNLTPYENDLECHRLGSNKAAAPIVDCFL 162
           P+VKK NSRRV  LDLNLTP END E  R+   K     VD FL
Sbjct: 136 PVVKKVNSRRVFSLDLNLTPLENDFE-FRVDDEKVTPITVDFFL 178

Source: Chrysanthemum x morifolium

Species: Chrysanthemum x morifolium

Genus: Chrysanthemum

Family: Asteraceae

Order: Asterales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388506426|gb|AFK41279.1| unknown [Lotus japonicus]

 Score =  176 bits (447), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 100/173 (57%), Positives = 117/173 (67%), Gaps = 21/173 (12%)

Query: 1   MANCLMFMSQGGHFDAVNSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGT 60
           MANCLM +SQGG F+   +   + + RVFECKTCNRQF SFQALGGHRASHKKPRL  G 
Sbjct: 12  MANCLMLLSQGGEFETTTTSTYSPS-RVFECKTCNRQFSSFQALGGHRASHKKPRLMAGN 70

Query: 61  GGGADTQ-----QSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNEKVSTLTLS 115
           G   DT+      SP KP+THECS+CGLEFAIGQALGGHMRRHRA  L GN   S+ T+S
Sbjct: 71  G---DTELLHGSSSPPKPKTHECSICGLEFAIGQALGGHMRRHRAENLSGNMMQSSTTMS 127

Query: 116 DTAPL---------VKKANSRRVLCLDLNLTPYENDLECHRLGSNKAAAPIVD 159
            ++           V KA  + VL LDLNLTP+ENDLE  ++G    A  +VD
Sbjct: 128 CSSGGSSLDSSPKNVMKAYKKIVLALDLNLTPFENDLEFLKIGK---ATGLVD 177

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	162
TAIR|locus:2054548	156	AT2G28710 "AT2G28710" [Arabido	0.777	0.807	0.5	1.5e-28
TAIR|locus:2049811	178	ZAT11 "AT2G37430" [Arabidopsis	0.950	0.865	0.432	1.7e-27
TAIR|locus:2168073	162	RHL41 "AT5G59820" [Arabidopsis	0.814	0.814	0.468	2.9e-25
TAIR|locus:2179924	362	AT5G04390 "AT5G04390" [Arabido	0.172	0.077	0.821	4.7e-25
TAIR|locus:2075291	168	ZAT7 "AT3G46090" [Arabidopsis	0.827	0.797	0.454	7.8e-23
TAIR|locus:2046153	286	AT2G28200 "AT2G28200" [Arabido	0.537	0.304	0.402	1.2e-22
TAIR|locus:2075865	398	AT3G10470 "AT3G10470" [Arabido	0.172	0.070	0.821	1.2e-22
TAIR|locus:2084046	175	AT3G53600 "AT3G53600" [Arabido	0.672	0.622	0.478	1.3e-22
TAIR|locus:2142674	292	AT5G03510 "AT5G03510" [Arabido	0.469	0.260	0.425	6.8e-22
TAIR|locus:2075261	170	AT3G46070 "AT3G46070" [Arabido	0.808	0.770	0.423	7e-22

TAIR|locus:2054548 AT2G28710 "AT2G28710" [Arabidopsis thaliana (taxid:3702)]

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 74/148 (50%), Positives = 94/148 (63%)

Query:     1 MANCLMFMSQGGHFDAVNSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLXXXX 60
             MANCL+ +S+  H +   S       RVF CKTCN++FPSFQALGGHRASH++       
Sbjct:    14 MANCLILLSKA-HQNDTKS-------RVFACKTCNKEFPSFQALGGHRASHRR-----SA 60

Query:    61 XXXXXXQQSP--AKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNEKVSTLTLSDTA 118
                     SP   KP  HEC +CG EFA+GQALGGHMR+HR  +  G  +  +L  + TA
Sbjct:    61 ALEGHAPPSPKRVKPVKHECPICGAEFAVGQALGGHMRKHRGGSGGGGGR--SLAPA-TA 117

Query:   119 PL-VKKA---NSRRVLCLDLNLTPYEND 142
             P+ +KK+   N +RVLCLDLNLTP EN+
Sbjct:   118 PVTMKKSGGGNGKRVLCLDLNLTPLENE 145

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2049811 ZAT11 "AT2G37430" [Arabidopsis thaliana (taxid:3702)]

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 70/162 (43%), Positives = 91/162 (56%)

Query:     1 MANCLMFMSQGGHFDAV--NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLXX 58
             +A CLM ++Q      +  N    +     FECKTCN++F SFQALGGHRASHKKP+L  
Sbjct:    17 IAKCLMILAQTSMVKQIGLNQHTESHTSNQFECKTCNKRFSSFQALGGHRASHKKPKLTV 76

Query:    59 XXXXXXXXQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNEKVSTLTLSDTA 118
                              H+CS+C   F  GQALGGHMRRHR+        +S +  S   
Sbjct:    77 EQKDVKHLSNDYKGNHFHKCSICSQSFGTGQALGGHMRRHRSSMTVEPSFISPMIPS--M 134

Query:   119 PLVKKA-NSRRVLCLDLNLTPYENDLECHRLGSNKAAAPIVD 159
             P++K+  +S+R+L LDLNLTP ENDLE +  G  K   P +D
Sbjct:   135 PVLKRCGSSKRILSLDLNLTPLENDLE-YIFG--KTFVPKID 173

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2168073 RHL41 "AT5G59820" [Arabidopsis thaliana (taxid:3702)]

 Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 67/143 (46%), Positives = 84/143 (58%)

Query:     2 ANCLMFMSQGGHFDAVNSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLXXXXX 61
             ANCLM +S+ G      +VD     RVF CKTC +QF SFQALGGHRASHKKP       
Sbjct:    16 ANCLMLLSRVGQ----ENVDGGDQKRVFTCKTCLKQFHSFQALGGHRASHKKPN----ND 67

Query:    62 XXXXXQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVA-LHGNEKVSTLTLSD-TAP 119
                       K  +H C +CG+EF +GQALGGHMRRHR  +   G   V+   L + T  
Sbjct:    68 ALSSGLMKKVKTSSHPCPICGVEFPMGQALGGHMRRHRNESGAAGGALVTRALLPEPTVT 127

Query:   120 LVKKANS-RRVLCLDLNLTPYEN 141
              +KK++S +RV CLDL+L   +N
Sbjct:   128 TLKKSSSGKRVACLDLSLGMVDN 150

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0009643 "photosynthetic acclimation" evidence=IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009409 "response to cold" evidence=IEP

GO:0009631 "cold acclimation" evidence=IMP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0006979 "response to oxidative stress" evidence=IEP;RCA;IMP

GO:0009408 "response to heat" evidence=IEP;IMP

GO:0009416 "response to light stimulus" evidence=IMP

GO:0009611 "response to wounding" evidence=IEP;RCA;IMP

GO:0042538 "hyperosmotic salinity response" evidence=IEP;RCA;IMP

GO:0010224 "response to UV-B" evidence=IEP

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0010286 "heat acclimation" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2179924 AT5G04390 "AT5G04390" [Arabidopsis thaliana (taxid:3702)]

 Score = 138 (53.6 bits), Expect = 4.7e-25, Sum P(4) = 4.7e-25
 Identities = 23/28 (82%), Positives = 27/28 (96%)

Query:    28 VFECKTCNRQFPSFQALGGHRASHKKPR 55
             V++CKTC+R FPSFQALGGHRASHKKP+
Sbjct:   152 VYQCKTCDRTFPSFQALGGHRASHKKPK 179

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2075291 ZAT7 "AT3G46090" [Arabidopsis thaliana (taxid:3702)]

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 65/143 (45%), Positives = 82/143 (57%)

Query:     2 ANCLMFMSQGGHFDAVNSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLXXXXX 61
             A CLM +S+ G        D     RVF CKTC ++F SFQALGGHRASHKK  L     
Sbjct:    17 AKCLMLLSRVGECGGGCGGDE----RVFRCKTCLKEFSSFQALGGHRASHKK--LINSDN 70

Query:    62 XXXXXQQSPAKPRT-HECSVCGLEFAIGQALGGHMRRHRAVALHGNEKV-STLTLSDTAP 119
                    S  K +T H C +CG++F +GQALGGHMRRHR   + G+    S L  + T  
Sbjct:    71 PSLLGSLSNKKTKTSHPCPICGVKFPMGQALGGHMRRHRNEKVSGSLVTRSFLPETTTVT 130

Query:   120 LVKKANS-RRVLCLDLNLTPYEN 141
              +KK +S +RV CLDL+L   E+
Sbjct:   131 ALKKFSSGKRVACLDLDLDSMES 153

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0045926 "negative regulation of growth" evidence=IGI

GO:0010200 "response to chitin" evidence=IEP

TAIR|locus:2046153 AT2G28200 "AT2G28200" [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 1.2e-22, Sum P(2) = 1.2e-22
 Identities = 39/97 (40%), Positives = 51/97 (52%)

Query:    74 RTHECSVCGLEFAIGQALGGHMRRHRAVALHGNEKVSTLTLS--DTAPLVK------KAN 125
             + HECS+CG EF  GQALGGHMRRHR      +   +T  +S   T   ++         
Sbjct:   188 KVHECSICGSEFTSGQALGGHMRRHRTAVTTISPVAATAEVSRNSTEEEIEINIGRSMEQ 247

Query:   126 SRRVLCLDLNLTPYENDL-ECHRLGSNKAAAP-IVDC 160
              R+ L LDLNL   E+DL E    G   +A P ++DC
Sbjct:   248 QRKYLPLDLNLPAPEDDLRESKFQGIVFSATPALIDC 284

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016926 "protein desumoylation" evidence=RCA

GO:0048573 "photoperiodism, flowering" evidence=RCA

GO:0050665 "hydrogen peroxide biosynthetic process" evidence=RCA

TAIR|locus:2075865 AT3G10470 "AT3G10470" [Arabidopsis thaliana (taxid:3702)]

 Score = 138 (53.6 bits), Expect = 1.2e-22, Sum P(3) = 1.2e-22
 Identities = 23/28 (82%), Positives = 27/28 (96%)

Query:    28 VFECKTCNRQFPSFQALGGHRASHKKPR 55
             V++CKTC+R FPSFQALGGHRASHKKP+
Sbjct:   181 VYQCKTCDRTFPSFQALGGHRASHKKPK 208

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009555 "pollen development" evidence=IMP

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2084046 AT3G53600 "AT3G53600" [Arabidopsis thaliana (taxid:3702)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 55/115 (47%), Positives = 71/115 (61%)

Query:    29 FECKTCNRQFPSFQALGGHRASHKKPRLXXXXXXXXXXQQSPAKPRTHECSVCGLEFAIG 88
             FECKTCNR+F SFQALGGHRASHKKP+L           +   +   H+C++C   F  G
Sbjct:    49 FECKTCNRKFDSFQALGGHRASHKKPKLIVDQEQVKHRNK---ENDMHKCTICDQMFGTG 105

Query:    89 QALGGHMRRHRAVALHGNEKVSTLTLSDTAPLVKKANSRRVLCLDLNLTPYENDL 143
             QALGGHMR+HR   +     V ++  S   P+  + +S + + LDLNLTP ENDL
Sbjct:   106 QALGGHMRKHRTSMITEQSIVPSVVYS--RPVFNRCSSSKEI-LDLNLTPLENDL 157

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2142674 AT5G03510 "AT5G03510" [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 6.8e-22, Sum P(2) = 6.8e-22
 Identities = 34/80 (42%), Positives = 49/80 (61%)

Query:    72 KP-RTHECSVCGLEFAIGQALGGHMRRHRAVALHGNEKVSTLT-LSDTAPLVKKANSR-- 127
             KP +THECS+C  EF+ GQALGGHMRRHR + ++ N   +  T +S ++    + + R  
Sbjct:   187 KPEKTHECSICKAEFSSGQALGGHMRRHRGLTINANATSAIKTAISSSSHHHHEESIRPK 246

Query:   128 RVLCLDLNLTPYENDLECHR 147
               L LDLNL   E++  C +
Sbjct:   247 NFLQLDLNLPAPEDERCCEK 266

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2075261 AT3G46070 "AT3G46070" [Arabidopsis thaliana (taxid:3702)]

 Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 64/151 (42%), Positives = 80/151 (52%)

Query:     2 ANCLMFMSQGGHFDAVNSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLXXXXX 61
             A+CLM +S  G  D           RVF CKTC R F SFQALGGHRASH K        
Sbjct:    16 ASCLMLLSGIGEHDGRKK-------RVFRCKTCERDFDSFQALGGHRASHSKLTNSDDKS 68

Query:    62 XXXXXQQSPAKPRT---HECSVCGLEFAIGQALGGHMRRHRAVALHGNEKVSTLTLSD-- 116
                  ++ P    T   H C +CGLEF +GQALGGHMR+HR       EK S + ++   
Sbjct:    69 LPGSPKKKPKTTTTTTAHTCPICGLEFPMGQALGGHMRKHRNEK--EREKASNVLVTHSF 126

Query:   117 -----TAPLVKKANS-RRVLCLDLNLTPYEN 141
                  T   +KK++S +RV CLD +LT  E+
Sbjct:   127 MPETTTVTTLKKSSSGKRVACLDFDLTSVES 157

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	162
pfam13912	27	pfam13912, zf-C2H2_6, C2H2-type zinc finger	2e-06
pfam13912	27	pfam13912, zf-C2H2_6, C2H2-type zinc finger	7e-04

>gnl|CDD|206083 pfam13912, zf-C2H2_6, C2H2-type zinc finger

 Score = 41.8 bits (99), Expect = 2e-06
 Identities = 13/27 (48%), Positives = 15/27 (55%)

Query: 28 VFECKTCNRQFPSFQALGGHRASHKKP 54
          V  C  C + F S QALGGH+ SH   
Sbjct: 1  VHTCGVCGKTFSSLQALGGHKKSHCSL 27

Length = 27

>gnl|CDD|206083 pfam13912, zf-C2H2_6, C2H2-type zinc finger

 Score = 34.9 bits (81), Expect = 7e-04
 Identities = 13/25 (52%), Positives = 15/25 (60%)

Query: 75 THECSVCGLEFAIGQALGGHMRRHR 99
           H C VCG  F+  QALGGH + H 
Sbjct: 1  VHTCGVCGKTFSSLQALGGHKKSHC 25

Length = 27

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	162
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	99.87
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	99.8
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	99.63
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	99.51
KOG3576	267	consensus Ovo and related transcription factors [T	99.38
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	99.35
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	99.28
PHA00733	128	hypothetical protein	99.13
KOG3576	267	consensus Ovo and related transcription factors [T	99.07
PHA02768	55	hypothetical protein; Provisional	99.06
KOG3608	467	consensus Zn finger proteins [General function pre	99.03
KOG3608	467	consensus Zn finger proteins [General function pre	98.82
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.79
PHA00732	79	hypothetical protein	98.63
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.57
PLN03086	567	PRLI-interacting factor K; Provisional	98.5
PHA02768	55	hypothetical protein; Provisional	98.47
PHA00616	44	hypothetical protein	98.45
COG5189	423	SFP1 Putative transcriptional repressor regulating	98.35
PHA00616	44	hypothetical protein	98.34
KOG3993	500	consensus Transcription factor (contains Zn finger	98.3
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	98.26
KOG3993	500	consensus Transcription factor (contains Zn finger	98.07
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	98.05
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.02
PLN03086	567	PRLI-interacting factor K; Provisional	97.93
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.9
PHA00733	128	hypothetical protein	97.86
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.83
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.7
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.67
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.67
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	97.63
smart00355	26	ZnF_C2H2 zinc finger.	97.44
PRK04860	160	hypothetical protein; Provisional	97.17
smart00355	26	ZnF_C2H2 zinc finger.	97.16
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	97.05
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	97.02
KOG1146	1406	consensus Homeobox protein [General function predi	96.86
PHA00732	79	hypothetical protein	96.81
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	96.79
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	96.72
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	96.63
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	96.2
COG5048	467	FOG: Zn-finger [General function prediction only]	95.98
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	95.89
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	95.83
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	95.12
COG5048	467	FOG: Zn-finger [General function prediction only]	94.75
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	94.31
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	94.26
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	93.23
COG5189	423	SFP1 Putative transcriptional repressor regulating	93.23
COG1592	166	Rubrerythrin [Energy production and conversion]	91.61
cd00729	34	rubredoxin_SM Rubredoxin, Small Modular nonheme ir	91.42
KOG2893	341	consensus Zn finger protein [General function pred	91.19
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	90.61
PRK04860	160	hypothetical protein; Provisional	90.35
KOG1146	1406	consensus Homeobox protein [General function predi	89.79
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	88.05
COG4049	65	Uncharacterized protein containing archaeal-type C	87.78
PRK00398	46	rpoP DNA-directed RNA polymerase subunit P; Provis	87.51
smart00614	50	ZnF_BED BED zinc finger. DNA-binding domain in chr	86.2
COG4049	65	Uncharacterized protein containing archaeal-type C	84.56
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	84.54
PF02892	45	zf-BED: BED zinc finger; InterPro: IPR003656 Zinc	84.03
TIGR02098	38	MJ0042_CXXC MJ0042 family finger-like domain. This	80.95
COG1997	89	RPL43A Ribosomal protein L37AE/L43A [Translation,	80.02

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=99.87  E-value=1e-22  Score=150.50  Aligned_cols=109  Identities=20%  Similarity=0.317  Sum_probs=96.4

Q ss_pred             cchhhhhcCCCCCCccccccccCC---CceeecCccCCccCChhHHHHHHHhcCC-------CCCCCCCCCCCcCccCCC
Q 040287            2 ANCLMFMSQGGHFDAVNSVDMTAA---GRVFECKTCNRQFPSFQALGGHRASHKK-------PRLTDGTGGGADTQQSPA   71 (162)
Q Consensus         2 a~C~k~f~~~~~l~~~~h~~~h~~---~k~~~C~~C~k~f~~~~~L~~H~~~h~~-------~~~~~~~~~l~~h~~~h~   71 (162)
                      .+|||+.+..++|.  +|+.+|-.   .+.+.|.+|+|.|.+...|++|+++|+-       .+.|...+-|+.|+|+|+
T Consensus       134 ~eCgk~ysT~snLs--rHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWLLQGHiRTHT  211 (279)
T KOG2462|consen  134 PECGKSYSTSSNLS--RHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWLLQGHIRTHT  211 (279)
T ss_pred             cccccccccccccc--hhhcccccccccccccCCCCCceeeehHHHhhHhhccCCCcccccccccccchHHhhccccccc
Confidence            57999999999999  99988863   5779999999999999999999999982       223334457799999999


Q ss_pred             CCCceecCCCccccccchhHhhhhccccccccCCCCccccc
Q 040287           72 KPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNEKVSTL  112 (162)
Q Consensus        72 ~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~  112 (162)
                      |||||.|+.|+|+|+.+++|+.||++|.+.+++.|..+...
T Consensus       212 GEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~Ks  252 (279)
T KOG2462|consen  212 GEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKS  252 (279)
T ss_pred             CCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhH
Confidence            99999999999999999999999999999999998887653

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=99.80  E-value=4.8e-21  Score=141.67  Aligned_cols=91  Identities=20%  Similarity=0.327  Sum_probs=80.9

Q ss_pred             chhhhhcCCCCCCccccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCC---------CCCCcCccCCCCC
Q 040287            3 NCLMFMSQGGHFDAVNSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGT---------GGGADTQQSPAKP   73 (162)
Q Consensus         3 ~C~k~f~~~~~l~~~~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~---------~~l~~h~~~h~~~   73 (162)
                      .|+|.+-.--.|.  .|+|+|+  -+++|.+|||.|.+.+-|+.|+|+|+|||||.|.         ++|+.|+++|.+.
T Consensus       166 ~C~K~YvSmpALk--MHirTH~--l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~  241 (279)
T KOG2462|consen  166 YCGKVYVSMPALK--MHIRTHT--LPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDV  241 (279)
T ss_pred             CCCceeeehHHHh--hHhhccC--CCcccccccccccchHHhhcccccccCCCCccCCcccchhcchHHHHHHHHhhcCC
Confidence            5888887766777  8999987  6899999999999999999999999999999843         3789999999999


Q ss_pred             CceecCCCccccccchhHhhhhcc
Q 040287           74 RTHECSVCGLEFAIGQALGGHMRR   97 (162)
Q Consensus        74 kp~~C~~C~k~F~~~~~L~~H~~~   97 (162)
                      |+|+|..|+|+|+..+.|.+|...
T Consensus       242 K~~qC~~C~KsFsl~SyLnKH~ES  265 (279)
T KOG2462|consen  242 KKHQCPRCGKSFALKSYLNKHSES  265 (279)
T ss_pred             ccccCcchhhHHHHHHHHHHhhhh
Confidence            999999999999999999999764

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=99.63  E-value=3.5e-17  Score=135.77  Aligned_cols=48  Identities=19%  Similarity=0.421  Sum_probs=45.2

Q ss_pred             chhhhhcCCCCCCccccccccCCCceeecCccCCccCChhHHHHHHHhcC
Q 040287            3 NCLMFMSQGGHFDAVNSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHK   52 (162)
Q Consensus         3 ~C~k~f~~~~~l~~~~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~   52 (162)
                      .|.|.|..++.|.  .|.|.|+||+||+|.+||..|.++.+|+.|...|+
T Consensus       358 ~CakvfgS~SaLq--iHlRSHTGERPfqCnvCG~~FSTkGNLKvH~~rH~  405 (958)
T KOG1074|consen  358 FCAKVFGSDSALQ--IHLRSHTGERPFQCNVCGNRFSTKGNLKVHFQRHR  405 (958)
T ss_pred             hhHhhcCchhhhh--hhhhccCCCCCeeecccccccccccceeeeeeecc
Confidence            6999999999999  99999999999999999999999999999987665

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=99.51  E-value=2.2e-15  Score=123.77  Aligned_cols=71  Identities=17%  Similarity=0.386  Sum_probs=47.8

Q ss_pred             CceeecCccCCccCChhHHHHHHHhcCCCCCCCCCC---------CCCcCccCCCCCCceecCCCccccccchhHhhhhc
Q 040287           26 GRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTG---------GGADTQQSPAKPRTHECSVCGLEFAIGQALGGHMR   96 (162)
Q Consensus        26 ~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~---------~l~~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~   96 (162)
                      +..|.|+.|+|.|...+.|.+|.--|+|.+||.|..         .|..|+|.|.|||||.|..|+|+|+.++....||.
T Consensus       892 ~gmyaCDqCDK~FqKqSSLaRHKYEHsGqRPyqC~iCkKAFKHKHHLtEHkRLHSGEKPfQCdKClKRFSHSGSYSQHMN  971 (1007)
T KOG3623|consen  892 DGMYACDQCDKAFQKQSSLARHKYEHSGQRPYQCIICKKAFKHKHHLTEHKRLHSGEKPFQCDKCLKRFSHSGSYSQHMN  971 (1007)
T ss_pred             cccchHHHHHHHHHhhHHHHHhhhhhcCCCCcccchhhHhhhhhhhhhhhhhhccCCCcchhhhhhhhcccccchHhhhc
Confidence            334555555555555555555555555555555321         33445555569999999999999999999999986

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=99.38  E-value=1.8e-14  Score=102.76  Aligned_cols=74  Identities=22%  Similarity=0.389  Sum_probs=52.5

Q ss_pred             CCceeecCccCCccCChhHHHHHHHhcCCCCCCC---------CCCCCCcCccCCCCCCceecCCCccccccchhHhhhh
Q 040287           25 AGRVFECKTCNRQFPSFQALGGHRASHKKPRLTD---------GTGGGADTQQSPAKPRTHECSVCGLEFAIGQALGGHM   95 (162)
Q Consensus        25 ~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~---------~~~~l~~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~   95 (162)
                      +.-.|.|.+|+|.|.....|.+|++-|...+.+-         ....|++|+++|+|.+||+|..|+++|.+.-.|..|.
T Consensus       114 d~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsleshl  193 (267)
T KOG3576|consen  114 DQDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESHL  193 (267)
T ss_pred             CCCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHHHH
Confidence            3445777777777777777777777666544322         1225667777777899999999999999999999997


Q ss_pred             c-cc
Q 040287           96 R-RH   98 (162)
Q Consensus        96 ~-~H   98 (162)
                      + +|
T Consensus       194 ~kvh  197 (267)
T KOG3576|consen  194 KKVH  197 (267)
T ss_pred             HHHc
Confidence            6 45

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=99.35  E-value=2.1e-13  Score=113.71  Aligned_cols=83  Identities=25%  Similarity=0.434  Sum_probs=76.0

Q ss_pred             cchhhhhcCCCCCCccccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecC--
Q 040287            2 ANCLMFMSQGGHFDAVNSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECS--   79 (162)
Q Consensus         2 a~C~k~f~~~~~l~~~~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~--   79 (162)
                      ..|.+.+++.+.|.  .|.|+|+||+||+|.+||+.|.++.+|+.|+-+|....++               .-++.|+  
T Consensus       609 iiC~rVlSC~saLq--mHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~---------------R~q~ScP~~  671 (958)
T KOG1074|consen  609 IICLRVLSCPSALQ--MHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAKPPA---------------RVQFSCPST  671 (958)
T ss_pred             eeeeecccchhhhh--hhhhcccCcCccccccccchhccccchhhcccccccCccc---------------cccccCCch
Confidence            46999999999999  9999999999999999999999999999999999766554               2579999  


Q ss_pred             -CCccccccchhHhhhhcccccc
Q 040287           80 -VCGLEFAIGQALGGHMRRHRAV  101 (162)
Q Consensus        80 -~C~k~F~~~~~L~~H~~~H~~~  101 (162)
                       +|-+.|...-.|..|+++|.+.
T Consensus       672 ~ic~~kftn~V~lpQhIriH~~~  694 (958)
T KOG1074|consen  672 FICQKKFTNAVTLPQHIRIHLGG  694 (958)
T ss_pred             hhhcccccccccccceEEeecCC
Confidence             9999999999999999999844

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=99.28  E-value=9.5e-13  Score=108.56  Aligned_cols=50  Identities=20%  Similarity=0.252  Sum_probs=29.3

Q ss_pred             CCCcCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCCcccc
Q 040287           62 GGADTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNEKVST  111 (162)
Q Consensus        62 ~l~~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~  111 (162)
                      .|.+|.--|+|.+||+|.+|.|+|..+.+|..|+|.|.||+|+.|+.+..
T Consensus       909 SLaRHKYEHsGqRPyqC~iCkKAFKHKHHLtEHkRLHSGEKPfQCdKClK  958 (1007)
T KOG3623|consen  909 SLARHKYEHSGQRPYQCIICKKAFKHKHHLTEHKRLHSGEKPFQCDKCLK  958 (1007)
T ss_pred             HHHHhhhhhcCCCCcccchhhHhhhhhhhhhhhhhhccCCCcchhhhhhh
Confidence            34555555666666666666666666666666666666666655555543

>PHA00733 hypothetical protein

Probab=99.13  E-value=4.5e-11  Score=81.18  Aligned_cols=77  Identities=21%  Similarity=0.311  Sum_probs=61.3

Q ss_pred             cchhhhhcCCCCCCcc----ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCcee
Q 040287            2 ANCLMFMSQGGHFDAV----NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHE   77 (162)
Q Consensus         2 a~C~k~f~~~~~l~~~----~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~   77 (162)
                      +.|.+.|.+...|.-.    .|+..+ +++||.|+.|++.|.+...|..|++.|.                     .+|.
T Consensus        44 ~~~~~~~~~~~~l~~~~~l~~~~~~~-~~kPy~C~~Cgk~Fss~s~L~~H~r~h~---------------------~~~~  101 (128)
T PHA00733         44 AVVKTLIYNPQLLDESSYLYKLLTSK-AVSPYVCPLCLMPFSSSVSLKQHIRYTE---------------------HSKV  101 (128)
T ss_pred             HHHhhhccChhhhcchHHHHhhcccC-CCCCccCCCCCCcCCCHHHHHHHHhcCC---------------------cCcc
Confidence            3577777777666633    343444 4789999999999999999999988652                     3689


Q ss_pred             cCCCccccccchhHhhhhccccc
Q 040287           78 CSVCGLEFAIGQALGGHMRRHRA  100 (162)
Q Consensus        78 C~~C~k~F~~~~~L~~H~~~H~~  100 (162)
                      |..|++.|.....|.+|+...++
T Consensus       102 C~~CgK~F~~~~sL~~H~~~~h~  124 (128)
T PHA00733        102 CPVCGKEFRNTDSTLDHVCKKHN  124 (128)
T ss_pred             CCCCCCccCCHHHHHHHHHHhcC
Confidence            99999999999999999887554

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=99.07  E-value=3.7e-11  Score=85.95  Aligned_cols=99  Identities=13%  Similarity=0.187  Sum_probs=82.5

Q ss_pred             chhhhhcCCCCCCccccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCC---------CCCCcCcc-CC--
Q 040287            3 NCLMFMSQGGHFDAVNSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGT---------GGGADTQQ-SP--   70 (162)
Q Consensus         3 ~C~k~f~~~~~l~~~~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~---------~~l~~h~~-~h--   70 (162)
                      .|||.|.-++.|.  +|++-|++-|.|.|..|||.|...-+|++|+|+|+|.+||+|.         |.|..|.+ +|  
T Consensus       122 vCgK~F~lQRmln--rh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsleshl~kvhgv  199 (267)
T KOG3576|consen  122 VCGKKFGLQRMLN--RHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESHLKKVHGV  199 (267)
T ss_pred             hhhhhhhHHHHHH--HHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHHHHHHHcCc
Confidence            5999999999999  9999999999999999999999999999999999999999843         34544543 22  


Q ss_pred             --------CCCCceecCCCccccccchhHhhhhcccccccc
Q 040287           71 --------AKPRTHECSVCGLEFAIGQALGGHMRRHRAVAL  103 (162)
Q Consensus        71 --------~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~  103 (162)
                              ..+|-|.|+.||.+-.....+..|.+.|....+
T Consensus       200 ~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp~Sp  240 (267)
T KOG3576|consen  200 QHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHPFSP  240 (267)
T ss_pred             hHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCCCCH
Confidence                    236789999999999999999999988765433

>PHA02768 hypothetical protein; Provisional

Probab=99.06  E-value=8.7e-11  Score=67.17  Aligned_cols=44  Identities=16%  Similarity=0.199  Sum_probs=39.8

Q ss_pred             eeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCCccccccchhHh
Q 040287           28 VFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVCGLEFAIGQALG   92 (162)
Q Consensus        28 ~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C~k~F~~~~~L~   92 (162)
                      -|.|++||+.|...++|..|+++|+                     ++|+|..|++.|.+.+.|.
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H~---------------------k~~kc~~C~k~f~~~s~l~   48 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKHN---------------------TNLKLSNCKRISLRTGEYI   48 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhcC---------------------CcccCCcccceecccceeE
Confidence            4899999999999999999999994                     5899999999999888764

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=99.03  E-value=1.3e-11  Score=94.66  Aligned_cols=147  Identities=15%  Similarity=0.185  Sum_probs=93.0

Q ss_pred             cchhhhhcCCCCCCccccccccCCCceeecCccCCccCChhHHHHHHHhcC--CCCCCC---------------------
Q 040287            2 ANCLMFMSQGGHFDAVNSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHK--KPRLTD---------------------   58 (162)
Q Consensus         2 a~C~k~f~~~~~l~~~~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~--~~~~~~---------------------   58 (162)
                      |.|.+.|.++++|.  +|+|.|++||...|+.||.-|.++..|-.|.+..+  ...+|.                     
T Consensus       183 ~~Ct~~~~~k~~Lr--eH~r~Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rH  260 (467)
T KOG3608|consen  183 AMCTKHMGNKYRLR--EHIRTHSNEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRH  260 (467)
T ss_pred             hhhhhhhccHHHHH--HHHHhcCCCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHh
Confidence            56777777777777  88888888877777777777777777776654332  122221                     


Q ss_pred             -----C---------CCCCCcCcc-CCCCCCceecCCCccccccchhHhhhhccccccccCCCCcccccccCCCCchhh-
Q 040287           59 -----G---------TGGGADTQQ-SPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNEKVSTLTLSDTAPLVK-  122 (162)
Q Consensus        59 -----~---------~~~l~~h~~-~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~~-  122 (162)
                           |         .+.|..|++ .|...|||+|..|++.|.+.+.|.+|..+|+ +....++-..-.-     ++.. 
T Consensus       261 vn~ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS-~~~y~C~h~~C~~-----s~r~~  334 (467)
T KOG3608|consen  261 VNCYKCPLCDMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHS-KTVYQCEHPDCHY-----SVRTY  334 (467)
T ss_pred             hhcccccccccCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhcc-ccceecCCCCCcH-----HHHHH
Confidence                 1         114567877 5888999999999999999999999999998 4443333211000     0000 


Q ss_pred             hcCCCccccc--CCCCCCCCCchhhhhccCCCCCCC
Q 040287          123 KANSRRVLCL--DLNLTPYENDLECHRLGSNKAAAP  156 (162)
Q Consensus       123 ~~~~~~~~~~--d~nl~p~~~d~~~~~~~~~~~~~~  156 (162)
                      .+-.......  .-|.++|.+.++-.-|++...+.+
T Consensus       335 ~q~~~H~~evhEg~np~~Y~CH~Cdr~ft~G~~L~~  370 (467)
T KOG3608|consen  335 TQMRRHFLEVHEGNNPILYACHCCDRFFTSGKSLSA  370 (467)
T ss_pred             HHHHHHHHHhccCCCCCceeeecchhhhccchhHHH
Confidence            0111111122  356778999888866766555443

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=98.82  E-value=5.4e-10  Score=85.90  Aligned_cols=96  Identities=17%  Similarity=0.309  Sum_probs=75.1

Q ss_pred             cchhhhhcCCCCCCccccccc-cCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCC---C--------CCCcCcc-
Q 040287            2 ANCLMFMSQGGHFDAVNSVDM-TAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGT---G--------GGADTQQ-   68 (162)
Q Consensus         2 a~C~k~f~~~~~l~~~~h~~~-h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~---~--------~l~~h~~-   68 (162)
                      +.|.+..+..+.|.  .|+|. |+..|||+|+.|++.|.+.+.|.+|..+|+ +..|.|+   |        .+.+|.+ 
T Consensus       267 plCdmtc~~~ssL~--~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS-~~~y~C~h~~C~~s~r~~~q~~~H~~e  343 (467)
T KOG3608|consen  267 PLCDMTCSSASSLT--THIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHS-KTVYQCEHPDCHYSVRTYTQMRRHFLE  343 (467)
T ss_pred             cccccCCCChHHHH--HHHHhhhccCCCccccchhhhhccHHHHHHHHHhcc-ccceecCCCCCcHHHHHHHHHHHHHHH
Confidence            46777777777777  88876 888999999999999999999999999998 4445532   2        3456665 


Q ss_pred             CCCC--CCceecCCCccccccchhHhhhhccccc
Q 040287           69 SPAK--PRTHECSVCGLEFAIGQALGGHMRRHRA  100 (162)
Q Consensus        69 ~h~~--~kp~~C~~C~k~F~~~~~L~~H~~~H~~  100 (162)
                      +|.|  +.+|.|..|++.|.+..+|..|++..++
T Consensus       344 vhEg~np~~Y~CH~Cdr~ft~G~~L~~HL~kkH~  377 (467)
T KOG3608|consen  344 VHEGNNPILYACHCCDRFFTSGKSLSAHLMKKHG  377 (467)
T ss_pred             hccCCCCCceeeecchhhhccchhHHHHHHHhhc
Confidence            4444  5679999999999999999999765333

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.79  E-value=4.7e-09  Score=51.42  Aligned_cols=26  Identities=27%  Similarity=0.584  Sum_probs=21.8

Q ss_pred             HHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCCcccccc
Q 040287           43 ALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVCGLEFAI   87 (162)
Q Consensus        43 ~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C~k~F~~   87 (162)
                      +|.+|+++|+                   |++||.|+.|+++|.+
T Consensus         1 ~l~~H~~~H~-------------------~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRTHT-------------------GEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHHHS-------------------SSSSEEESSSSEEESS
T ss_pred             CHHHHhhhcC-------------------CCCCCCCCCCcCeeCc
Confidence            4677777776                   8999999999999974

...

>PHA00732 hypothetical protein

Probab=98.63  E-value=2.5e-08  Score=61.97  Aligned_cols=47  Identities=26%  Similarity=0.553  Sum_probs=39.4

Q ss_pred             eeecCccCCccCChhHHHHHHHh-cCCCCCCCCCCCCCcCccCCCCCCceecCCCccccccchhHhhhhcccc
Q 040287           28 VFECKTCNRQFPSFQALGGHRAS-HKKPRLTDGTGGGADTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHR   99 (162)
Q Consensus        28 ~~~C~~C~k~f~~~~~L~~H~~~-h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~   99 (162)
                      ||.|+.|++.|.+..+|..|++. |.                      ++.|+.||++|.   .+..|.+++.
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~----------------------~~~C~~CgKsF~---~l~~H~~~~~   48 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHT----------------------LTKCPVCNKSYR---RLNQHFYSQY   48 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccC----------------------CCccCCCCCEeC---ChhhhhcccC
Confidence            58999999999999999999984 53                      358999999998   5778876553

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.57  E-value=6.1e-09  Score=51.02  Aligned_cols=23  Identities=13%  Similarity=0.582  Sum_probs=21.5

Q ss_pred             ccccccCCCceeecCccCCccCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPS   40 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~   40 (162)
                      .|+++|++++||.|++|++.|.+
T Consensus         4 ~H~~~H~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    4 RHMRTHTGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHSSSSSEEESSSSEEESS
T ss_pred             HHhhhcCCCCCCCCCCCcCeeCc
Confidence            89999999999999999999963

...

>PLN03086 PRLI-interacting factor K; Provisional

Probab=98.50  E-value=1.1e-07  Score=78.45  Aligned_cols=80  Identities=14%  Similarity=0.190  Sum_probs=60.0

Q ss_pred             ceeecCccCCccCChhHHHHHHHhcCCCCCCCCCC-------CCCcCccCCCCCCceecCCCcccccc----------ch
Q 040287           27 RVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTG-------GGADTQQSPAKPRTHECSVCGLEFAI----------GQ   89 (162)
Q Consensus        27 k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~-------~l~~h~~~h~~~kp~~C~~C~k~F~~----------~~   89 (162)
                      +++.|+.|++.|. ...|..|++.|+  +++.|.|       .|..|+.+|..++|+.|++|++.|..          ..
T Consensus       452 ~H~~C~~Cgk~f~-~s~LekH~~~~H--kpv~CpCg~~~~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s  528 (567)
T PLN03086        452 NHVHCEKCGQAFQ-QGEMEKHMKVFH--EPLQCPCGVVLEKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLR  528 (567)
T ss_pred             cCccCCCCCCccc-hHHHHHHHHhcC--CCccCCCCCCcchhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhh
Confidence            3468999999996 678999999875  5555444       34568888889999999999999853          34


Q ss_pred             hHhhhhccccccccCCCCccc
Q 040287           90 ALGGHMRRHRAVALHGNEKVS  110 (162)
Q Consensus        90 ~L~~H~~~H~~~~~~~~~~~~  110 (162)
                      .|..|...+ |.++..|..+.
T Consensus       529 ~Lt~HE~~C-G~rt~~C~~Cg  548 (567)
T PLN03086        529 GMSEHESIC-GSRTAPCDSCG  548 (567)
T ss_pred             hHHHHHHhc-CCcceEccccC
Confidence            788888875 67776665543

>PHA02768 hypothetical protein; Provisional

Probab=98.47  E-value=8.9e-09  Score=58.93  Aligned_cols=39  Identities=8%  Similarity=0.044  Sum_probs=35.4

Q ss_pred             cchhhhhcCCCCCCccccccccCCCceeecCccCCccCChhHH
Q 040287            2 ANCLMFMSQGGHFDAVNSVDMTAAGRVFECKTCNRQFPSFQAL   44 (162)
Q Consensus         2 a~C~k~f~~~~~l~~~~h~~~h~~~k~~~C~~C~k~f~~~~~L   44 (162)
                      .+|||.|++...|.  .|+++|+  ++|+|..|++.|.+.+.|
T Consensus         9 ~~CGK~Fs~~~~L~--~H~r~H~--k~~kc~~C~k~f~~~s~l   47 (55)
T PHA02768          9 PICGEIYIKRKSMI--THLRKHN--TNLKLSNCKRISLRTGEY   47 (55)
T ss_pred             chhCCeeccHHHHH--HHHHhcC--CcccCCcccceeccccee
Confidence            47999999999999  9999999  799999999999877654

>PHA00616 hypothetical protein

Probab=98.45  E-value=4.2e-08  Score=53.55  Aligned_cols=32  Identities=16%  Similarity=0.139  Sum_probs=29.2

Q ss_pred             ceecCCCccccccchhHhhhhccccccccCCC
Q 040287           75 THECSVCGLEFAIGQALGGHMRRHRAVALHGN  106 (162)
Q Consensus        75 p~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~  106 (162)
                      ||+|+.||+.|...+.|.+|++.|+++++...
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~   32 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTL   32 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCccce
Confidence            69999999999999999999999999987543

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=98.35  E-value=3.8e-07  Score=69.56  Aligned_cols=72  Identities=21%  Similarity=0.453  Sum_probs=51.1

Q ss_pred             CCCceeecCc--cCCccCChhHHHHHHHh-cCCCCCCCCCCCCCcCccCCCCCCceecCCCccccccchhHhhhhc
Q 040287           24 AAGRVFECKT--CNRQFPSFQALGGHRAS-HKKPRLTDGTGGGADTQQSPAKPRTHECSVCGLEFAIGQALGGHMR   96 (162)
Q Consensus        24 ~~~k~~~C~~--C~k~f~~~~~L~~H~~~-h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~   96 (162)
                      .++|||+|++  |+|.|+....|+.|+.. |...+..... .-..+.-.-...|||.|++|+|++.....|+-|..
T Consensus       345 ~d~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p-~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~  419 (423)
T COG5189         345 KDGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENP-SPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRK  419 (423)
T ss_pred             ecCceecCCCCCchhhhccccchhhhhhccccCcccCCCC-CccccccccccCCceeccccchhhccCccceeccc
Confidence            4579999976  99999999999999864 3222221111 11122222346799999999999999999998854

>PHA00616 hypothetical protein

Probab=98.34  E-value=1.6e-07  Score=51.21  Aligned_cols=29  Identities=21%  Similarity=0.370  Sum_probs=25.8

Q ss_pred             eeecCccCCccCChhHHHHHHHhcCCCCC
Q 040287           28 VFECKTCNRQFPSFQALGGHRASHKKPRL   56 (162)
Q Consensus        28 ~~~C~~C~k~f~~~~~L~~H~~~h~~~~~   56 (162)
                      ||.|..||+.|..++.|..|++.|+++++
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~   29 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNK   29 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCc
Confidence            68999999999999999999999984443

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=98.30  E-value=2e-07  Score=73.44  Aligned_cols=84  Identities=19%  Similarity=0.310  Sum_probs=56.3

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCC--------CCC----CCCcCccC--CCCCCceecCCCcc
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTD--------GTG----GGADTQQS--PAKPRTHECSVCGL   83 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~--------~~~----~l~~h~~~--h~~~kp~~C~~C~k   83 (162)
                      +|.--..-..-|+|.+|+|.|.-..+|..|+|+|.-...-.        ...    ..+.-.+.  -..+..|.|.+|++
T Consensus       285 QHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea~rsg~dss~gi~~C~~C~K  364 (500)
T KOG3993|consen  285 QHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEAERSGDDSSSGIFSCHTCGK  364 (500)
T ss_pred             hccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhccccCCcccCceeecHHhhh
Confidence            55533333346999999999999999999999995322111        000    00001111  12244799999999


Q ss_pred             ccccchhHhhhhcccccc
Q 040287           84 EFAIGQALGGHMRRHRAV  101 (162)
Q Consensus        84 ~F~~~~~L~~H~~~H~~~  101 (162)
                      .|++...|++|+.+|...
T Consensus       365 kFrRqAYLrKHqlthq~~  382 (500)
T KOG3993|consen  365 KFRRQAYLRKHQLTHQRA  382 (500)
T ss_pred             hhHHHHHHHHhHHhhhcc
Confidence            999999999998887543

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.26  E-value=3.3e-07  Score=43.33  Aligned_cols=23  Identities=43%  Similarity=0.911  Sum_probs=21.6

Q ss_pred             eecCCCccccccchhHhhhhccc
Q 040287           76 HECSVCGLEFAIGQALGGHMRRH   98 (162)
Q Consensus        76 ~~C~~C~k~F~~~~~L~~H~~~H   98 (162)
                      |.|+.|+++|.+...|.+|++.|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            78999999999999999999875

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=98.07  E-value=2.6e-06  Score=67.27  Aligned_cols=49  Identities=20%  Similarity=0.451  Sum_probs=43.0

Q ss_pred             cchhhhhcCCCCCCccccccccCC---------------------------------CceeecCccCCccCChhHHHHHH
Q 040287            2 ANCLMFMSQGGHFDAVNSVDMTAA---------------------------------GRVFECKTCNRQFPSFQALGGHR   48 (162)
Q Consensus         2 a~C~k~f~~~~~l~~~~h~~~h~~---------------------------------~k~~~C~~C~k~f~~~~~L~~H~   48 (162)
                      ++|+|.|++-.+|.  .|.|+|.-                                 +..|.|.+|+|.|.++..|+.|+
T Consensus       299 PEC~KVFsCPANLA--SHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKHq  376 (500)
T KOG3993|consen  299 PECDKVFSCPANLA--SHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEAERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQ  376 (500)
T ss_pred             CcccccccCchhhh--hhhcccCCchhhhhcCCCChhhhhhhhhhhhhccccCCcccCceeecHHhhhhhHHHHHHHHhH
Confidence            58999999999999  99999952                                 12499999999999999999998


Q ss_pred             HhcC
Q 040287           49 ASHK   52 (162)
Q Consensus        49 ~~h~   52 (162)
                      .+|.
T Consensus       377 lthq  380 (500)
T KOG3993|consen  377 LTHQ  380 (500)
T ss_pred             Hhhh
Confidence            8775

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.05  E-value=2.9e-06  Score=40.01  Aligned_cols=23  Identities=30%  Similarity=0.710  Sum_probs=21.6

Q ss_pred             eecCccCCccCChhHHHHHHHhc
Q 040287           29 FECKTCNRQFPSFQALGGHRASH   51 (162)
Q Consensus        29 ~~C~~C~k~f~~~~~L~~H~~~h   51 (162)
                      |+|+.|++.|.....|..|++.|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            78999999999999999999875

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.02  E-value=7.7e-06  Score=47.13  Aligned_cols=52  Identities=19%  Similarity=0.445  Sum_probs=39.3

Q ss_pred             eeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCCccccccchhHhhhhcccc
Q 040287           28 VFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHR   99 (162)
Q Consensus        28 ~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~   99 (162)
                      .|.|+.|++. .....|..|....+..                 ..+.+.|++|...+.  .+|.+|+..++
T Consensus         2 ~f~CP~C~~~-~~~~~L~~H~~~~H~~-----------------~~~~v~CPiC~~~~~--~~l~~Hl~~~H   53 (54)
T PF05605_consen    2 SFTCPYCGKG-FSESSLVEHCEDEHRS-----------------ESKNVVCPICSSRVT--DNLIRHLNSQH   53 (54)
T ss_pred             CcCCCCCCCc-cCHHHHHHHHHhHCcC-----------------CCCCccCCCchhhhh--hHHHHHHHHhc
Confidence            4899999995 5578899997654321                 235799999998655  49999998754

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PLN03086 PRLI-interacting factor K; Provisional

Probab=97.93  E-value=6.2e-06  Score=68.32  Aligned_cols=86  Identities=19%  Similarity=0.337  Sum_probs=66.9

Q ss_pred             cchhhhhcCCCCCCccccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCC-C------------------C
Q 040287            2 ANCLMFMSQGGHFDAVNSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGT-G------------------G   62 (162)
Q Consensus         2 a~C~k~f~~~~~l~~~~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~-~------------------~   62 (162)
                      ..|++.|. ...|.  .|++++.  +++.|+ ||+.+ ....|..|+.+|...+++.|. |                  .
T Consensus       457 ~~Cgk~f~-~s~Le--kH~~~~H--kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~  529 (567)
T PLN03086        457 EKCGQAFQ-QGEME--KHMKVFH--EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRG  529 (567)
T ss_pred             CCCCCccc-hHHHH--HHHHhcC--CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhh
Confidence            36999995 56677  9999874  899999 99766 568999999999999987743 2                  2


Q ss_pred             CCcCccCCCCCCceecCCCccccccchhHhhhhc
Q 040287           63 GADTQQSPAKPRTHECSVCGLEFAIGQALGGHMR   96 (162)
Q Consensus        63 l~~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~   96 (162)
                      |..|.... |.+++.|..||+.|..+ .|..|+-
T Consensus       530 Lt~HE~~C-G~rt~~C~~Cgk~Vrlr-dm~~H~~  561 (567)
T PLN03086        530 MSEHESIC-GSRTAPCDSCGRSVMLK-EMDIHQI  561 (567)
T ss_pred             HHHHHHhc-CCcceEccccCCeeeeh-hHHHHHH
Confidence            45676665 89999999999998754 4566654

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.90  E-value=6.7e-06  Score=40.33  Aligned_cols=26  Identities=38%  Similarity=0.645  Sum_probs=23.9

Q ss_pred             ceecCCCccccccchhHhhhhccccc
Q 040287           75 THECSVCGLEFAIGQALGGHMRRHRA  100 (162)
Q Consensus        75 p~~C~~C~k~F~~~~~L~~H~~~H~~  100 (162)
                      ||.|..|++.|.....|..|++.|.+
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~~   26 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHCS   26 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhcC
Confidence            68999999999999999999998853

>PHA00733 hypothetical protein

Probab=97.86  E-value=4.7e-06  Score=56.64  Aligned_cols=47  Identities=19%  Similarity=0.357  Sum_probs=41.4

Q ss_pred             cchhhhhcCCCCCCccccccccCCCceeecCccCCccCChhHHHHHHHhcC
Q 040287            2 ANCLMFMSQGGHFDAVNSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHK   52 (162)
Q Consensus         2 a~C~k~f~~~~~l~~~~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~   52 (162)
                      ..||+.|.+...|.  .|+++|  +.+|.|.+|++.|.....|..|++..+
T Consensus        77 ~~Cgk~Fss~s~L~--~H~r~h--~~~~~C~~CgK~F~~~~sL~~H~~~~h  123 (128)
T PHA00733         77 PLCLMPFSSSVSLK--QHIRYT--EHSKVCPVCGKEFRNTDSTLDHVCKKH  123 (128)
T ss_pred             CCCCCcCCCHHHHH--HHHhcC--CcCccCCCCCCccCCHHHHHHHHHHhc
Confidence            36999999999998  998877  457999999999999999999997654

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.83  E-value=8e-06  Score=38.55  Aligned_cols=23  Identities=39%  Similarity=0.859  Sum_probs=19.7

Q ss_pred             eecCCCccccccchhHhhhhccc
Q 040287           76 HECSVCGLEFAIGQALGGHMRRH   98 (162)
Q Consensus        76 ~~C~~C~k~F~~~~~L~~H~~~H   98 (162)
                      |.|++|++.|.+...|..|+++|
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~   23 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTH   23 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhh
Confidence            78999999999999999999876

...

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.70  E-value=3.6e-05  Score=36.20  Aligned_cols=23  Identities=35%  Similarity=0.756  Sum_probs=19.7

Q ss_pred             eecCccCCccCChhHHHHHHHhc
Q 040287           29 FECKTCNRQFPSFQALGGHRASH   51 (162)
Q Consensus        29 ~~C~~C~k~f~~~~~L~~H~~~h   51 (162)
                      |.|++|++.|.+...|..|++.|
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~   23 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTH   23 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhh
Confidence            78999999999999999999876

...

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.67  E-value=2.6e-05  Score=38.15  Aligned_cols=25  Identities=44%  Similarity=0.869  Sum_probs=23.4

Q ss_pred             eeecCccCCccCChhHHHHHHHhcC
Q 040287           28 VFECKTCNRQFPSFQALGGHRASHK   52 (162)
Q Consensus        28 ~~~C~~C~k~f~~~~~L~~H~~~h~   52 (162)
                      +|.|..|++.|.+...|..|++.|.
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhc
Confidence            6899999999999999999998875

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.67  E-value=2.1e-05  Score=50.49  Aligned_cols=69  Identities=22%  Similarity=0.386  Sum_probs=22.4

Q ss_pred             ecCccCCccCChhHHHHHHHhcCCCCCCC-----CCCCCCcCccCCCCCCceecCCCccccccchhHhhhhcccc
Q 040287           30 ECKTCNRQFPSFQALGGHRASHKKPRLTD-----GTGGGADTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHR   99 (162)
Q Consensus        30 ~C~~C~k~f~~~~~L~~H~~~h~~~~~~~-----~~~~l~~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~   99 (162)
                      .|..|+..|.....|..|+...++-..-.     ....+..+.+.- ....+.|..|++.|.+...|..||+.+.
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~C~~C~~~f~s~~~l~~Hm~~~~   74 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKHGFDIPDQKYLVDPNRLLNYLRKK-VKESFRCPYCNKTFRSREALQEHMRSKH   74 (100)
T ss_dssp             -------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHTT
T ss_pred             Cccccccccccccccccccccccccccccccccccccccccccccc-cCCCCCCCccCCCCcCHHHHHHHHcCcc
Confidence            48899999999999999986544422111     111222222211 1237999999999999999999999753

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.63  E-value=3.8e-05  Score=42.97  Aligned_cols=33  Identities=15%  Similarity=0.340  Sum_probs=24.3

Q ss_pred             CCCCceecCCCccccccchhHhhhhcccccccc
Q 040287           71 AKPRTHECSVCGLEFAIGQALGGHMRRHRAVAL  103 (162)
Q Consensus        71 ~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~  103 (162)
                      ..+.|..|++|+..+++..+|++|+.++++.+|
T Consensus        20 ~S~~PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   20 QSEQPATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             TTS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             ccCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            367899999999999999999999998887776

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>smart00355 ZnF_C2H2 zinc finger

Probab=97.44  E-value=5.6e-05  Score=36.06  Aligned_cols=24  Identities=42%  Similarity=0.711  Sum_probs=22.0

Q ss_pred             eecCCCccccccchhHhhhhcccc
Q 040287           76 HECSVCGLEFAIGQALGGHMRRHR   99 (162)
Q Consensus        76 ~~C~~C~k~F~~~~~L~~H~~~H~   99 (162)
                      |.|..|+++|.....|..|++.|.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H~   24 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTHX   24 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHhc
Confidence            679999999999999999999775

>PRK04860 hypothetical protein; Provisional

Probab=97.17  E-value=0.00035  Score=49.26  Aligned_cols=40  Identities=18%  Similarity=0.424  Sum_probs=33.8

Q ss_pred             ceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCCccccccch
Q 040287           27 RVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVCGLEFAIGQ   89 (162)
Q Consensus        27 k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C~k~F~~~~   89 (162)
                      -+|.|. |++   ....+.+|.++|+                   ++++|.|..|+..|....
T Consensus       118 ~~Y~C~-C~~---~~~~~rrH~ri~~-------------------g~~~YrC~~C~~~l~~~~  157 (160)
T PRK04860        118 FPYRCK-CQE---HQLTVRRHNRVVR-------------------GEAVYRCRRCGETLVFKG  157 (160)
T ss_pred             EEEEcC-CCC---eeCHHHHHHHHhc-------------------CCccEECCCCCceeEEec
Confidence            479998 998   5678899999997                   788999999999987544

>smart00355 ZnF_C2H2 zinc finger

Probab=97.16  E-value=0.00032  Score=33.29  Aligned_cols=24  Identities=33%  Similarity=0.693  Sum_probs=21.9

Q ss_pred             eecCccCCccCChhHHHHHHHhcC
Q 040287           29 FECKTCNRQFPSFQALGGHRASHK   52 (162)
Q Consensus        29 ~~C~~C~k~f~~~~~L~~H~~~h~   52 (162)
                      |.|..|++.|.....|..|++.|.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H~   24 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTHX   24 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHhc
Confidence            679999999999999999999774

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.05  E-value=0.0008  Score=37.70  Aligned_cols=34  Identities=12%  Similarity=0.192  Sum_probs=23.7

Q ss_pred             cCCCceeecCccCCccCChhHHHHHHHhcCCCCC
Q 040287           23 TAAGRVFECKTCNRQFPSFQALGGHRASHKKPRL   56 (162)
Q Consensus        23 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~   56 (162)
                      +..+.|-.|++|+..+.+..+|++|+..+++.+|
T Consensus        19 ~~S~~PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   19 SQSEQPATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             CTTS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             hccCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            3457899999999999999999999987765554

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=97.02  E-value=0.00034  Score=33.39  Aligned_cols=23  Identities=26%  Similarity=0.660  Sum_probs=21.3

Q ss_pred             eecCCCccccccchhHhhhhccc
Q 040287           76 HECSVCGLEFAIGQALGGHMRRH   98 (162)
Q Consensus        76 ~~C~~C~k~F~~~~~L~~H~~~H   98 (162)
                      |.|..|++.|.+...|..|++.+
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcC
Confidence            68999999999999999999865

>KOG1146 consensus Homeobox protein [General function prediction only]

Probab=96.86  E-value=0.00065  Score=60.75  Aligned_cols=92  Identities=14%  Similarity=0.289  Sum_probs=63.7

Q ss_pred             chhhhhcCCCCCCccccc-cccCCCceeecCccCCccCChhHHHHHHHhcCC-CCCCCCCCCCCcCccCC------CCCC
Q 040287            3 NCLMFMSQGGHFDAVNSV-DMTAAGRVFECKTCNRQFPSFQALGGHRASHKK-PRLTDGTGGGADTQQSP------AKPR   74 (162)
Q Consensus         3 ~C~k~f~~~~~l~~~~h~-~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~-~~~~~~~~~l~~h~~~h------~~~k   74 (162)
                      -|+..|.+++.+.  .|+ ..++..+.|+|..|+..|+....|..|+|+-+- .+.-.|+ ....|.+..      .+-+
T Consensus       441 ~~e~~~~s~r~~~--~~t~~L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~-~gq~~~~~arg~~~~~~~~  517 (1406)
T KOG1146|consen  441 KAEPLLESKRSLE--GQTVVLHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCK-AGQNHPRLARGEVYRCPGK  517 (1406)
T ss_pred             chhhhhhhhcccc--cceeeeecccccccCCccchhhhhHHHhhhcccccccccchhHhH-hccccccccccccccCCCC
Confidence            3455565555555  443 457777999999999999999999999997332 1110011 112222222      2457


Q ss_pred             ceecCCCccccccchhHhhhhcc
Q 040287           75 THECSVCGLEFAIGQALGGHMRR   97 (162)
Q Consensus        75 p~~C~~C~k~F~~~~~L~~H~~~   97 (162)
                      ||.|..|..++..+.+|.+|+..
T Consensus       518 p~~C~~C~~stttng~LsihlqS  540 (1406)
T KOG1146|consen  518 PYPCRACNYSTTTNGNLSIHLQS  540 (1406)
T ss_pred             cccceeeeeeeecchHHHHHHHH
Confidence            99999999999999999999874

>PHA00732 hypothetical protein

Probab=96.81  E-value=0.00063  Score=42.25  Aligned_cols=26  Identities=35%  Similarity=0.634  Sum_probs=23.4

Q ss_pred             ceecCCCccccccchhHhhhhcc-ccc
Q 040287           75 THECSVCGLEFAIGQALGGHMRR-HRA  100 (162)
Q Consensus        75 p~~C~~C~k~F~~~~~L~~H~~~-H~~  100 (162)
                      ||.|+.||+.|.+..+|.+|++. |.+
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~~   27 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHTL   27 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccCC
Confidence            68999999999999999999984 664

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=96.79  E-value=0.00077  Score=32.11  Aligned_cols=23  Identities=39%  Similarity=0.716  Sum_probs=21.1

Q ss_pred             eecCccCCccCChhHHHHHHHhc
Q 040287           29 FECKTCNRQFPSFQALGGHRASH   51 (162)
Q Consensus        29 ~~C~~C~k~f~~~~~L~~H~~~h   51 (162)
                      |.|.+|++.|.+...|..|++.+
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcC
Confidence            78999999999999999998764

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=96.72  E-value=0.00083  Score=32.77  Aligned_cols=23  Identities=26%  Similarity=0.543  Sum_probs=21.1

Q ss_pred             eecCCCccccccchhHhhhhccc
Q 040287           76 HECSVCGLEFAIGQALGGHMRRH   98 (162)
Q Consensus        76 ~~C~~C~k~F~~~~~L~~H~~~H   98 (162)
                      |.|..|++.|.+...+..|+++.
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~sk   24 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKSK   24 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTSH
T ss_pred             CCcccCCCCcCCHHHHHHHHccC
Confidence            78999999999999999999863

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=96.63  E-value=0.00089  Score=31.62  Aligned_cols=23  Identities=26%  Similarity=0.629  Sum_probs=18.6

Q ss_pred             eecCCCccccccchhHhhhhcccc
Q 040287           76 HECSVCGLEFAIGQALGGHMRRHR   99 (162)
Q Consensus        76 ~~C~~C~k~F~~~~~L~~H~~~H~   99 (162)
                      |.|+.|+.+.. ...|.+|++.|.
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H   23 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHH   23 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhC
Confidence            78999999998 889999998864

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=96.20  E-value=0.0036  Score=29.46  Aligned_cols=23  Identities=22%  Similarity=0.496  Sum_probs=18.5

Q ss_pred             eecCccCCccCChhHHHHHHHhcC
Q 040287           29 FECKTCNRQFPSFQALGGHRASHK   52 (162)
Q Consensus        29 ~~C~~C~k~f~~~~~L~~H~~~h~   52 (162)
                      |+|+.|+.... ...|..|++.+.
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H   23 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHH   23 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhC
Confidence            78999999998 899999998763

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=95.98  E-value=0.0056  Score=48.66  Aligned_cols=55  Identities=18%  Similarity=0.352  Sum_probs=49.2

Q ss_pred             cchhhhhcCCCCCCcccccc--ccCCC--ceeecC--ccCCccCChhHHHHHHHhcCCCCCCC
Q 040287            2 ANCLMFMSQGGHFDAVNSVD--MTAAG--RVFECK--TCNRQFPSFQALGGHRASHKKPRLTD   58 (162)
Q Consensus         2 a~C~k~f~~~~~l~~~~h~~--~h~~~--k~~~C~--~C~k~f~~~~~L~~H~~~h~~~~~~~   58 (162)
                      +.|.+.|++...|.  .|.+  .|+++  +++.|.  .|++.|.....+..|...|.+..+..
T Consensus       293 ~~~~~~~s~~~~l~--~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (467)
T COG5048         293 KQCNISFSRSSPLT--RHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAK  353 (467)
T ss_pred             ccccCCcccccccc--ccccccccccccCCceeeeccCCCccccccccccCCcccccCCCccc
Confidence            46888999999999  9999  89999  999999  89999999999999999998766543

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=95.89  E-value=0.004  Score=29.82  Aligned_cols=21  Identities=29%  Similarity=0.618  Sum_probs=17.8

Q ss_pred             eecCCCccccccchhHhhhhcc
Q 040287           76 HECSVCGLEFAIGQALGGHMRR   97 (162)
Q Consensus        76 ~~C~~C~k~F~~~~~L~~H~~~   97 (162)
                      ..|+.||+.| ..+.|.+|+.+
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~~   23 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEKI   23 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHHh
Confidence            4799999999 68899999764

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=95.83  E-value=0.0027  Score=30.90  Aligned_cols=22  Identities=36%  Similarity=0.694  Sum_probs=20.0

Q ss_pred             eecCccCCccCChhHHHHHHHh
Q 040287           29 FECKTCNRQFPSFQALGGHRAS   50 (162)
Q Consensus        29 ~~C~~C~k~f~~~~~L~~H~~~   50 (162)
                      |.|.+|++.|.....+..|+++
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            7899999999999999998764

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=95.12  E-value=0.02  Score=36.33  Aligned_cols=25  Identities=40%  Similarity=0.692  Sum_probs=21.9

Q ss_pred             eeecCccCCccCChhHHHHHHHhcC
Q 040287           28 VFECKTCNRQFPSFQALGGHRASHK   52 (162)
Q Consensus        28 ~~~C~~C~k~f~~~~~L~~H~~~h~   52 (162)
                      .+.|..|++.|.+...|..|++.+.
T Consensus        50 ~~~C~~C~~~f~s~~~l~~Hm~~~~   74 (100)
T PF12756_consen   50 SFRCPYCNKTFRSREALQEHMRSKH   74 (100)
T ss_dssp             SEEBSSSS-EESSHHHHHHHHHHTT
T ss_pred             CCCCCccCCCCcCHHHHHHHHcCcc
Confidence            5999999999999999999999753

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=94.75  E-value=0.011  Score=46.90  Aligned_cols=61  Identities=25%  Similarity=0.454  Sum_probs=50.5

Q ss_pred             ceeecCccCCccCChhHHHHHHH--hcCCCCCCCCCCCCCcCccCCCCC--CceecC--CCccccccchhHhhhhccccc
Q 040287           27 RVFECKTCNRQFPSFQALGGHRA--SHKKPRLTDGTGGGADTQQSPAKP--RTHECS--VCGLEFAIGQALGGHMRRHRA  100 (162)
Q Consensus        27 k~~~C~~C~k~f~~~~~L~~H~~--~h~~~~~~~~~~~l~~h~~~h~~~--kp~~C~--~C~k~F~~~~~L~~H~~~H~~  100 (162)
                      .++.|..|...|.....|..|.+  .|+                   ++  +|+.|+  .|++.|.+...+.+|..+|++
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~-------------------~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  348 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNHS-------------------GESLKPFSCPYSLCGKLFSRNDALKRHILLHTS  348 (467)
T ss_pred             cCCCCccccCCccccccccccccccccc-------------------cccCCceeeeccCCCccccccccccCCcccccC
Confidence            46888888888888888777777  454                   77  899999  799999999999999999988


Q ss_pred             cccCCC
Q 040287          101 VALHGN  106 (162)
Q Consensus       101 ~~~~~~  106 (162)
                      ..+...
T Consensus       349 ~~~~~~  354 (467)
T COG5048         349 ISPAKE  354 (467)
T ss_pred             CCcccc
Confidence            876543

>smart00451 ZnF_U1 U1-like zinc finger

Probab=94.31  E-value=0.04  Score=28.16  Aligned_cols=23  Identities=30%  Similarity=0.521  Sum_probs=20.3

Q ss_pred             eeecCccCCccCChhHHHHHHHh
Q 040287           28 VFECKTCNRQFPSFQALGGHRAS   50 (162)
Q Consensus        28 ~~~C~~C~k~f~~~~~L~~H~~~   50 (162)
                      +|.|++|++.|.....+..|+..
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~g   25 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKG   25 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHCh
Confidence            58899999999999999989754

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>smart00451 ZnF_U1 U1-like zinc finger

Probab=94.26  E-value=0.028  Score=28.78  Aligned_cols=23  Identities=17%  Similarity=0.541  Sum_probs=20.9

Q ss_pred             ceecCCCccccccchhHhhhhcc
Q 040287           75 THECSVCGLEFAIGQALGGHMRR   97 (162)
Q Consensus        75 p~~C~~C~k~F~~~~~L~~H~~~   97 (162)
                      +|.|..|++.|.....+..|+..
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~g   25 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKG   25 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHCh
Confidence            68899999999999999999875

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=93.23  E-value=0.077  Score=27.07  Aligned_cols=11  Identities=18%  Similarity=0.809  Sum_probs=9.1

Q ss_pred             eecCccCCccC
Q 040287           29 FECKTCNRQFP   39 (162)
Q Consensus        29 ~~C~~C~k~f~   39 (162)
                      |+|.+||..+.
T Consensus         2 ~~C~~CGy~y~   12 (33)
T cd00350           2 YVCPVCGYIYD   12 (33)
T ss_pred             EECCCCCCEEC
Confidence            78999998764

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=93.23  E-value=0.085  Score=40.98  Aligned_cols=60  Identities=22%  Similarity=0.398  Sum_probs=39.5

Q ss_pred             CCCceecCC--CccccccchhHhhhhcc-ccccccCCCCcccccccCCCCchhhhcCCCcccccCCCCCCCCCchhhhhc
Q 040287           72 KPRTHECSV--CGLEFAIGQALGGHMRR-HRAVALHGNEKVSTLTLSDTAPLVKKANSRRVLCLDLNLTPYENDLECHRL  148 (162)
Q Consensus        72 ~~kp~~C~~--C~k~F~~~~~L~~H~~~-H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~nl~p~~~d~~~~~~  148 (162)
                      ++|||+|++  |.|++.....|+-|+.- |...+.+++..                 ......+-..-.||.|+++-+++
T Consensus       346 d~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~-----------------p~~~~~F~~~~KPYrCevC~KRY  408 (423)
T COG5189         346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPS-----------------PEKMNIFSAKDKPYRCEVCDKRY  408 (423)
T ss_pred             cCceecCCCCCchhhhccccchhhhhhccccCcccCCCCC-----------------ccccccccccCCceeccccchhh
Confidence            469999997  99999999999999874 54444432221                 01111223444588888887766

>COG1592 Rubrerythrin [Energy production and conversion]

Probab=91.61  E-value=0.13  Score=36.39  Aligned_cols=24  Identities=25%  Similarity=0.801  Sum_probs=20.2

Q ss_pred             ceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCCc
Q 040287           27 RVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVCG   82 (162)
Q Consensus        27 k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C~   82 (162)
                      +.|.|.+||..+.                                |+-|-.||+||
T Consensus       133 ~~~vC~vCGy~~~--------------------------------ge~P~~CPiCg  156 (166)
T COG1592         133 KVWVCPVCGYTHE--------------------------------GEAPEVCPICG  156 (166)
T ss_pred             CEEEcCCCCCccc--------------------------------CCCCCcCCCCC
Confidence            3799999998743                                77899999998

>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase

Probab=91.42  E-value=0.18  Score=25.95  Aligned_cols=12  Identities=25%  Similarity=0.656  Sum_probs=9.5

Q ss_pred             eeecCccCCccC
Q 040287           28 VFECKTCNRQFP   39 (162)
Q Consensus        28 ~~~C~~C~k~f~   39 (162)
                      .|+|.+||..+.
T Consensus         2 ~~~C~~CG~i~~   13 (34)
T cd00729           2 VWVCPVCGYIHE   13 (34)
T ss_pred             eEECCCCCCEeE
Confidence            589999998753

In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>KOG2893 consensus Zn finger protein [General function prediction only]

Probab=91.19  E-value=0.091  Score=39.22  Aligned_cols=49  Identities=29%  Similarity=0.632  Sum_probs=38.6

Q ss_pred             ceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCCccccccchhHhhh-hcccc
Q 040287           27 RVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVCGLEFAIGQALGGH-MRRHR   99 (162)
Q Consensus        27 k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H-~~~H~   99 (162)
                      |++ |-.|++.|....-|-.|++.                       |-|+|.+|.|..-+...|..| |.+|.
T Consensus        10 kpw-cwycnrefddekiliqhqka-----------------------khfkchichkkl~sgpglsihcmqvhk   59 (341)
T KOG2893|consen   10 KPW-CWYCNREFDDEKILIQHQKA-----------------------KHFKCHICHKKLFSGPGLSIHCMQVHK   59 (341)
T ss_pred             Cce-eeecccccchhhhhhhhhhh-----------------------ccceeeeehhhhccCCCceeehhhhhh
Confidence            443 78899999888877777653                       459999999988888889888 66664

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=90.61  E-value=0.091  Score=38.87  Aligned_cols=54  Identities=13%  Similarity=0.282  Sum_probs=30.2

Q ss_pred             CceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCc-----eecCCCccccccc
Q 040287           26 GRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRT-----HECSVCGLEFAIG   88 (162)
Q Consensus        26 ~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp-----~~C~~C~k~F~~~   88 (162)
                      ++...|++|++.|.++.-.....+.-...      ..+..   ...+.-|     ..|+.||.+|...
T Consensus         3 ~k~~~CPvC~~~F~~~~vrs~~~r~~~~d------~D~~~---~Y~~vnP~~Y~V~vCP~CgyA~~~~   61 (214)
T PF09986_consen    3 DKKITCPVCGKEFKTKKVRSGKIRVIRRD------SDFCP---RYKGVNPLFYEVWVCPHCGYAAFEE   61 (214)
T ss_pred             CCceECCCCCCeeeeeEEEcCCceEeeec------CCCcc---ccCCCCCeeeeEEECCCCCCccccc
Confidence            46789999999998765433333221000      00000   0112333     5799999988755

>PRK04860 hypothetical protein; Provisional

Probab=90.35  E-value=0.15  Score=35.99  Aligned_cols=34  Identities=18%  Similarity=0.202  Sum_probs=28.8

Q ss_pred             CceecCCCccccccchhHhhhhccccccccCCCCcccc
Q 040287           74 RTHECSVCGLEFAIGQALGGHMRRHRAVALHGNEKVST  111 (162)
Q Consensus        74 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~  111 (162)
                      -+|.|. |++   ....+.+|.++|+++++..|..+..
T Consensus       118 ~~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~  151 (160)
T PRK04860        118 FPYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGE  151 (160)
T ss_pred             EEEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCc
Confidence            379998 997   7889999999999999987776544

>KOG1146 consensus Homeobox protein [General function prediction only]

Probab=89.79  E-value=0.23  Score=45.33  Aligned_cols=69  Identities=23%  Similarity=0.393  Sum_probs=47.2

Q ss_pred             CceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCCccccccchhHhhhhcc
Q 040287           26 GRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVCGLEFAIGQALGGHMRR   97 (162)
Q Consensus        26 ~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~   97 (162)
                      ..+|.|..|...|.....|..|.+.-  .+..+......-+...+..-++| |..|...|+....|..||++
T Consensus      1282 ~~~~~~~~~~~~~~~~~~l~~~~~k~--~~~~~~~~~~~~~~l~~~d~~~~-c~~c~~~~~~~~alqihm~~ 1350 (1406)
T KOG1146|consen 1282 THRYLCRQCKMAFDGEAPLTAHQRKF--CFAGRGSGGSMPPPLRVPDCTYH-CLACEVLLSGREALQIHMRS 1350 (1406)
T ss_pred             chhHHHHHHHhhhcchhHHHHHHHHH--HhccCccccCCCCcccCcccccc-chHHHhhcchhHHHHHHHHH
Confidence            34677777777777777777776221  11111222334455556667778 99999999999999999996

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=88.05  E-value=0.3  Score=27.74  Aligned_cols=26  Identities=27%  Similarity=0.497  Sum_probs=20.1

Q ss_pred             ceecCCCccccccchhHhhhhcc-cccc
Q 040287           75 THECSVCGLEFAIGQALGGHMRR-HRAV  101 (162)
Q Consensus        75 p~~C~~C~k~F~~~~~L~~H~~~-H~~~  101 (162)
                      .|.|++|++. -....|..|... |..+
T Consensus         2 ~f~CP~C~~~-~~~~~L~~H~~~~H~~~   28 (54)
T PF05605_consen    2 SFTCPYCGKG-FSESSLVEHCEDEHRSE   28 (54)
T ss_pred             CcCCCCCCCc-cCHHHHHHHHHhHCcCC
Confidence            4899999995 456789999765 6554

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=87.78  E-value=0.21  Score=28.54  Aligned_cols=27  Identities=19%  Similarity=0.409  Sum_probs=23.9

Q ss_pred             CCCCceecCCCccccccchhHhhhhcc
Q 040287           71 AKPRTHECSVCGLEFAIGQALGGHMRR   97 (162)
Q Consensus        71 ~~~kp~~C~~C~k~F~~~~~L~~H~~~   97 (162)
                      -||.-+.|+.||..|.......+|...
T Consensus        13 DGE~~lrCPRC~~~FR~~K~Y~RHVNK   39 (65)
T COG4049          13 DGEEFLRCPRCGMVFRRRKDYIRHVNK   39 (65)
T ss_pred             CCceeeeCCchhHHHHHhHHHHHHhhH
Confidence            478889999999999999999999753

>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional

Probab=87.51  E-value=0.48  Score=25.94  Aligned_cols=14  Identities=21%  Similarity=0.726  Sum_probs=11.1

Q ss_pred             ceeecCccCCccCC
Q 040287           27 RVFECKTCNRQFPS   40 (162)
Q Consensus        27 k~~~C~~C~k~f~~   40 (162)
                      ..|+|..||..|..
T Consensus         2 ~~y~C~~CG~~~~~   15 (46)
T PRK00398          2 AEYKCARCGREVEL   15 (46)
T ss_pred             CEEECCCCCCEEEE
Confidence            36899999988754

>smart00614 ZnF_BED BED zinc finger

Probab=86.20  E-value=0.47  Score=26.47  Aligned_cols=25  Identities=28%  Similarity=0.696  Sum_probs=19.8

Q ss_pred             ceecCCCccccccc-----hhHhhhhc-ccc
Q 040287           75 THECSVCGLEFAIG-----QALGGHMR-RHR   99 (162)
Q Consensus        75 p~~C~~C~k~F~~~-----~~L~~H~~-~H~   99 (162)
                      --.|..|++.++..     ++|.+|++ .|.
T Consensus        18 ~a~C~~C~~~l~~~~~~gTs~L~rHl~~~h~   48 (50)
T smart00614       18 RAKCKYCGKKLSRSSKGGTSNLRRHLRRKHP   48 (50)
T ss_pred             EEEecCCCCEeeeCCCCCcHHHHHHHHhHCc
Confidence            35699999998765     69999988 564

DNA-binding domain in chromatin-boundary-element-binding proteins and transposases

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=84.56  E-value=0.56  Score=26.85  Aligned_cols=31  Identities=13%  Similarity=0.213  Sum_probs=26.2

Q ss_pred             cccCCCceeecCccCCccCChhHHHHHHHhc
Q 040287           21 DMTAAGRVFECKTCNRQFPSFQALGGHRASH   51 (162)
Q Consensus        21 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h   51 (162)
                      +..-||.-++|+-||..|....+..+|....
T Consensus        10 ~~RDGE~~lrCPRC~~~FR~~K~Y~RHVNKa   40 (65)
T COG4049          10 RDRDGEEFLRCPRCGMVFRRRKDYIRHVNKA   40 (65)
T ss_pred             eccCCceeeeCCchhHHHHHhHHHHHHhhHH
Confidence            4456788899999999999999999998643

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=84.54  E-value=0.64  Score=30.58  Aligned_cols=16  Identities=31%  Similarity=0.617  Sum_probs=13.4

Q ss_pred             CCceecCCCccccccc
Q 040287           73 PRTHECSVCGLEFAIG   88 (162)
Q Consensus        73 ~kp~~C~~C~k~F~~~   88 (162)
                      ..|-.|++||..|.-.
T Consensus        24 k~PivCP~CG~~~~~~   39 (108)
T PF09538_consen   24 KDPIVCPKCGTEFPPE   39 (108)
T ss_pred             CCCccCCCCCCccCcc
Confidence            3588999999999766

The function of members of this family is unknown.

>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=84.03  E-value=0.8  Score=24.70  Aligned_cols=25  Identities=20%  Similarity=0.551  Sum_probs=16.6

Q ss_pred             CCCceecCCCccccccc----hhHhhhhc
Q 040287           72 KPRTHECSVCGLEFAIG----QALGGHMR   96 (162)
Q Consensus        72 ~~kp~~C~~C~k~F~~~----~~L~~H~~   96 (162)
                      +..-..|..|++.+...    ++|.+|++
T Consensus        13 ~~~~a~C~~C~~~~~~~~~~ts~l~~HL~   41 (45)
T PF02892_consen   13 DKKKAKCKYCGKVIKYSSGGTSNLKRHLK   41 (45)
T ss_dssp             CSS-EEETTTTEE-----SSTHHHHHHHH
T ss_pred             CcCeEEeCCCCeEEeeCCCcHHHHHHhhh
Confidence            45667899999998774    78999984

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.

>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain

Probab=80.95  E-value=1.1  Score=23.26  Aligned_cols=35  Identities=17%  Similarity=0.443  Sum_probs=22.8

Q ss_pred             eeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCCccccc
Q 040287           28 VFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVCGLEFA   86 (162)
Q Consensus        28 ~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C~k~F~   86 (162)
                      .+.|+.|+..|.-.....     ..                   ......|+.|+..|.
T Consensus         2 ~~~CP~C~~~~~v~~~~~-----~~-------------------~~~~v~C~~C~~~~~   36 (38)
T TIGR02098         2 RIQCPNCKTSFRVVDSQL-----GA-------------------NGGKVRCGKCGHVWY   36 (38)
T ss_pred             EEECCCCCCEEEeCHHHc-----CC-------------------CCCEEECCCCCCEEE
Confidence            368999999887554311     00                   122578999998874

This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.

>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]

Probab=80.02  E-value=0.95  Score=28.42  Aligned_cols=19  Identities=32%  Similarity=0.620  Sum_probs=14.6

Q ss_pred             CCCceecCCCccccccchh
Q 040287           72 KPRTHECSVCGLEFAIGQA   90 (162)
Q Consensus        72 ~~kp~~C~~C~k~F~~~~~   90 (162)
                      +...+.|..||..|+-...
T Consensus        50 a~GIW~C~kCg~~fAGgay   68 (89)
T COG1997          50 ATGIWKCRKCGAKFAGGAY   68 (89)
T ss_pred             ccCeEEcCCCCCeeccccc
Confidence            3457999999999985543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	162
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	6e-11
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	4e-08

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A Length = 39

 Score = 53.6 bits (129), Expect = 6e-11
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 27 RVFECKTCNRQFPSFQALGGHRASHKKPR 55
          R + C  C R+F S QALGGH   H++ R
Sbjct: 5  RSYTCSFCKREFRSAQALGGHMNVHRRDR 33

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A Length = 39

 Score = 45.9 bits (109), Expect = 4e-08
 Identities = 16/27 (59%), Positives = 18/27 (66%)

Query: 73 PRTHECSVCGLEFAIGQALGGHMRRHR 99
          PR++ CS C  EF   QALGGHM  HR
Sbjct: 4  PRSYTCSFCKREFRSAQALGGHMNVHR 30

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	162
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.85
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.85
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.83
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.82
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.81
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.81
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.79
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.79
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.79
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.79
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.78
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.78
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.77
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.77
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.76
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.76
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.75
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.74
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.74
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.74
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.73
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.73
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.72
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.72
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.72
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.72
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.72
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.72
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.72
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.71
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.71
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.68
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.68
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.68
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.67
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.65
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.65
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.64
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.63
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.59
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.59
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.59
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.58
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.57
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.57
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.56
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.56
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.56
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.56
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.55
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.54
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.54
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.53
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.53
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.52
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.48
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.48
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.48
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.48
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.48
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.48
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.47
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.47
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.47
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.47
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.47
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.47
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.47
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.47
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.47
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.47
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.47
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.47
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.47
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.47
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.47
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.47
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.47
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.46
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.46
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.46
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.46
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.46
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.46
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.46
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.46
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.46
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.46
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.46
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.46
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.46
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.46
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.46
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.46
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.46
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.46
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.45
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.45
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.45
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.45
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.45
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.44
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.44
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.44
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.44
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.44
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.43
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.43
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.43
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.42
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.39
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.39
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.38
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.38
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.38
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.38
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.37
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.37
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.37
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.37
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.37
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.37
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.37
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.37
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.36
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.36
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.36
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.36
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.36
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.36
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.36
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.36
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.36
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.36
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.35
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.35
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.35
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.35
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.35
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.35
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.35
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	99.34
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.34
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.34
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.34
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.34
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.33
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.33
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.33
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.33
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.33
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.33
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.33
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.32
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.32
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.32
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.32
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.32
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.32
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.32
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.32
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.32
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.32
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.32
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.32
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.32
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.32
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.32
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.31
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.31
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.31
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.31
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.31
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.31
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.31
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.31
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.31
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.31
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.31
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.31
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.31
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.31
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.31
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.3
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.3
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.3
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.3
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.3
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.3
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.3
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.3
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.3
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.3
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.3
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.3
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.3
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.3
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.3
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.3
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.3
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.3
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.3
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.3
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.3
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.3
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.3
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.3
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.3
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.3
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.3
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.3
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.29
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.29
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.29
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.29
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.29
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.29
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.29
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.29
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.29
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.29
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.29
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.29
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.29
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.29
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.29
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.29
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.29
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.29
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.29
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.29
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.29
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.29
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.29
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	99.29
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.29
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.29
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.29
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.28
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.28
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.28
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.27
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.27
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.27
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.27
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.27
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.27
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.27
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.27
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.27
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.26
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.26
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.26
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.26
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	99.26
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.26
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.25
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.25
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.24
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.23
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.22
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	99.22
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.22
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.21
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	99.21
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	99.2
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.2
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	99.19
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	99.18
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.18
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.17
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.17
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.17
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	99.15
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.14
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.14
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.14
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.13
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.12
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.12
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	99.1
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.1
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.1
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.1
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.08
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.08
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	99.07
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	99.06
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.06
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.05
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.05
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.04
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	99.04
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.03
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.03
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.03
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	99.02
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	99.01
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.01
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	99.01
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	98.99
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.98
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.97
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.96
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.95
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.94
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	98.93
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.92
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	98.91
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.91
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.91
2epa_A	72	Krueppel-like factor 10; transforming growth facto	98.91
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.9
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.89
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	98.89
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.89
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	98.89
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.88
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.88
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.88
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.87
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.85
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.84
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.84
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.83
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	98.83
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.82
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.82
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.79
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.79
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.79
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.79
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	98.78
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.76
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.74
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.74
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.74
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.74
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.72
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.71
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	98.18
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.71
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.7
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	98.16
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.69
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.69
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.68
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.68
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.65
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.63
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.62
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.58
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	98.0
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.55
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.54
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.54
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.54
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.52
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.5
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.48
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.48
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.47
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.46
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.81
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.43
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.81
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	98.42
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.42
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.36
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.65
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	98.16
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.09
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	97.76
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.25
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	97.14
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	96.99
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	96.58
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	96.38
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	95.72
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	93.16
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	89.22
1yuz_A	202	Nigerythrin; rubrythrin, rubredoxin, hemerythrin,	88.71
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	88.57
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	87.93
2gmg_A	105	Hypothetical protein PF0610; winged-helix like pro	87.18
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	87.01
2djr_A	76	Zinc finger BED domain-containing protein 2; C2H2	86.68
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	86.57
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	85.61
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	84.93
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	83.93
3pwf_A	170	Rubrerythrin; non heme iron peroxidases, oxidative	83.75

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.85  E-value=5.9e-23  Score=139.99  Aligned_cols=91  Identities=16%  Similarity=0.255  Sum_probs=81.3

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCC---------CCCcCccCCCCCCceecCCCccccccc
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTG---------GGADTQQSPAKPRTHECSVCGLEFAIG   88 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~---------~l~~h~~~h~~~kp~~C~~C~k~F~~~   88 (162)
                      .|.++|.|+++|.|++|++.|.....|..|+++|+++++|.|..         .|..|+++|++++||.|++||++|.+.
T Consensus        12 h~~~~h~Gek~y~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~   91 (133)
T 2lt7_A           12 HYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINY   91 (133)
T ss_dssp             EEEEEETTEEEEEETTTCCEESCHHHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCCEEESSSCCEESSH
T ss_pred             hceeecCCCcCeECCCCCCCcCCHHHHHHHHHHcCCCCCeeCCccCeecccccchhhhccccCCCccccCCCCCCCcCCH
Confidence            56788999999999999999999999999999999999987542         457899999999999999999999999


Q ss_pred             hhHhhhhccccccccCCCCc
Q 040287           89 QALGGHMRRHRAVALHGNEK  108 (162)
Q Consensus        89 ~~L~~H~~~H~~~~~~~~~~  108 (162)
                      +.|..|+++|++++|..+..
T Consensus        92 ~~L~~H~~~hh~~~p~~~~k  111 (133)
T 2lt7_A           92 QFMSSHIKSVHSQDPSGDSK  111 (133)
T ss_dssp             HHHHHHHHHHTCCCTTSSSC
T ss_pred             HHHHHHhHHhcCCCCCCCCC
Confidence            99999999999888755443

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.85  E-value=7.6e-22  Score=116.46  Aligned_cols=58  Identities=26%  Similarity=0.542  Sum_probs=55.4

Q ss_pred             CceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCCccccccchhHhhhhccccccc
Q 040287           26 GRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVA  102 (162)
Q Consensus        26 ~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~  102 (162)
                      ||||.|++||++|.....|..|+++|+                   |++||.|++||++|.+.++|.+|+++|+|++
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht-------------------~ekp~~C~~C~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRAHL-------------------GYRPRSCPECGKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHH-------------------TCCCEECTTTCCEESSHHHHHHHGGGGSCC-
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHHhC-------------------CCcCeECCCCCCCcCCHHHHHHHhCccCCCC
Confidence            799999999999999999999999997                   8899999999999999999999999999875

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.83  E-value=2.8e-20  Score=122.89  Aligned_cols=92  Identities=17%  Similarity=0.286  Sum_probs=80.0

Q ss_pred             CCCCCCccccccccCCCceeecCccCCccCChhHHHHHHHh--cCCCCCCC------------CCCCCCcCccCCCCCCc
Q 040287           10 QGGHFDAVNSVDMTAAGRVFECKTCNRQFPSFQALGGHRAS--HKKPRLTD------------GTGGGADTQQSPAKPRT   75 (162)
Q Consensus        10 ~~~~l~~~~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~--h~~~~~~~------------~~~~l~~h~~~h~~~kp   75 (162)
                      .+..|.  .|+++|+++++|.|++|++.|.....|..|+++  |.+.+++.            ....|..|+++|.+++|
T Consensus         3 s~~~l~--~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~~~   80 (115)
T 2dmi_A            3 SGSSGK--LYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKV   80 (115)
T ss_dssp             CCCCCC--CCCCCCCCCCSEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCCCCSS
T ss_pred             cchhhh--hheeeeCCCCCEECCccCchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhhccCCCcc
Confidence            456677  999999999999999999999999999999999  76666532            22367889999999999


Q ss_pred             eecCCCccccccchhHhhhhcccccccc
Q 040287           76 HECSVCGLEFAIGQALGGHMRRHRAVAL  103 (162)
Q Consensus        76 ~~C~~C~k~F~~~~~L~~H~~~H~~~~~  103 (162)
                      |.|++|++.|.+.+.|.+|+++|.....
T Consensus        81 ~~C~~C~k~f~~~~~L~~H~~~hh~~~~  108 (115)
T 2dmi_A           81 LKCMYCGHSFESLQDLSVHMIKTKHYQK  108 (115)
T ss_dssp             CBCSSSCCBCSSHHHHHHHHHHTTTTTC
T ss_pred             eECCCCCCccCCHHHHHHHHHHhCCccc
Confidence            9999999999999999999999876544

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.82  E-value=2.1e-22  Score=134.75  Aligned_cols=98  Identities=18%  Similarity=0.302  Sum_probs=86.3

Q ss_pred             chhhhhcCCCCCCccccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCC---C--------CCCcCccCCC
Q 040287            3 NCLMFMSQGGHFDAVNSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGT---G--------GGADTQQSPA   71 (162)
Q Consensus         3 ~C~k~f~~~~~l~~~~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~---~--------~l~~h~~~h~   71 (162)
                      .|++.|.....|.  .|+++| ++++|.|.+|++.|.....|..|+++|+++++|.|.   |        .|..|+++|.
T Consensus        12 ~C~~~f~~~~~l~--~H~~~h-~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~   88 (124)
T 1ubd_C           12 GCTKMFRDNSAMR--KHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHT   88 (124)
T ss_dssp             TCCCEESSHHHHH--HHHGGG-SCCCEECTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCEESCHHHHHHHHHHHH
T ss_pred             CCcCccCCHHHHH--HHHHHc-CCCCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCccCCHHHHHHHHHHhC
Confidence            7999999999998  999999 889999999999999999999999999999998864   4        3467889999


Q ss_pred             CCCceecC--CCccccccchhHhhhhcccccccc
Q 040287           72 KPRTHECS--VCGLEFAIGQALGGHMRRHRAVAL  103 (162)
Q Consensus        72 ~~kp~~C~--~C~k~F~~~~~L~~H~~~H~~~~~  103 (162)
                      ++++|.|+  .|+++|.+.+.|.+|+++|+++++
T Consensus        89 ~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~~~k~  122 (124)
T 1ubd_C           89 GDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKN  122 (124)
T ss_dssp             CCCCCCCCSTTCCCCCSSTTTTHHHHHHHC----
T ss_pred             CCCceECCCCCCCCccCCHHHHHHHHHHHccccc
Confidence            99999996  499999999999999999998876

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.81  E-value=1.9e-22  Score=144.38  Aligned_cols=107  Identities=16%  Similarity=0.294  Sum_probs=79.1

Q ss_pred             chhhhhcCCCCCCccccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCC---------CCCcCccCCCCC
Q 040287            3 NCLMFMSQGGHFDAVNSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTG---------GGADTQQSPAKP   73 (162)
Q Consensus         3 ~C~k~f~~~~~l~~~~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~---------~l~~h~~~h~~~   73 (162)
                      .|++.|.....|.  .|+++|.++++|.|++|++.|.....|..|++.|.++++|.|..         .|..|+++|.++
T Consensus        54 ~C~~~f~~~~~l~--~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~  131 (190)
T 2i13_A           54 ECGKSFSDKKDLT--RHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGE  131 (190)
T ss_dssp             TTCCEESSHHHHH--HHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHHHHHHCC
T ss_pred             CcCchhCCHHHHH--HHHHhcCCCCCccCcccCCccCCHHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhCCC
Confidence            5777777777777  77777777777888888888888888888887777777766432         345677777777


Q ss_pred             CceecCCCccccccchhHhhhhccccccccCCCCcccc
Q 040287           74 RTHECSVCGLEFAIGQALGGHMRRHRAVALHGNEKVST  111 (162)
Q Consensus        74 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~  111 (162)
                      +||.|++|++.|.+...|..|+++|+++++..+..+..
T Consensus       132 ~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~  169 (190)
T 2i13_A          132 KPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGK  169 (190)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHhcCCCCCeECCCCCC
Confidence            77777777777777777777777777777766665544

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.81  E-value=1.4e-21  Score=135.55  Aligned_cols=102  Identities=18%  Similarity=0.195  Sum_probs=91.5

Q ss_pred             chhhhhcCCCCCCccccccc-cCCCce--------eecCccCCccCChhHHHHHHHhcCCCCCCCCC---C--------C
Q 040287            3 NCLMFMSQGGHFDAVNSVDM-TAAGRV--------FECKTCNRQFPSFQALGGHRASHKKPRLTDGT---G--------G   62 (162)
Q Consensus         3 ~C~k~f~~~~~l~~~~h~~~-h~~~k~--------~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~---~--------~   62 (162)
                      .|++.|.....|.  .|+++ |.++++        |.|.+|++.|.....|..|+++|+++++|.|.   |        .
T Consensus        30 ~C~~~f~~~~~L~--~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~  107 (155)
T 2rpc_A           30 SCDRTFSTMHELV--THVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSEN  107 (155)
T ss_dssp             CCCCCBSSHHHHH--HHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSCTTTCCEESCHHH
T ss_pred             cCCcccCCHHHHH--HHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCCCCcccCCcCCCCCccCCHHH
Confidence            5999999999998  99987 887765        89999999999999999999999999998865   4        3


Q ss_pred             CCcCccCCCCCCceecCC--CccccccchhHhhhhccccccccCCC
Q 040287           63 GADTQQSPAKPRTHECSV--CGLEFAIGQALGGHMRRHRAVALHGN  106 (162)
Q Consensus        63 l~~h~~~h~~~kp~~C~~--C~k~F~~~~~L~~H~~~H~~~~~~~~  106 (162)
                      |..|+++|.+++||.|.+  |++.|.+...|.+|+++|+++++..+
T Consensus       108 L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~c  153 (155)
T 2rpc_A          108 LKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPS  153 (155)
T ss_dssp             HHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTTTTSCCCSCS
T ss_pred             HHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHHhcCCCCCCC
Confidence            467999999999999997  99999999999999999999988654

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.79  E-value=3.5e-20  Score=118.49  Aligned_cols=81  Identities=20%  Similarity=0.367  Sum_probs=67.4

Q ss_pred             chhhhhcCCCCCCccccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCCc
Q 040287            3 NCLMFMSQGGHFDAVNSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVCG   82 (162)
Q Consensus         3 ~C~k~f~~~~~l~~~~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C~   82 (162)
                      .|++.|.....|.  .|+++|.++++|.|.+|++.|.....|..|+++|+                   ++++|.|++|+
T Consensus        13 ~C~~~f~~~~~l~--~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------------~~~~~~C~~C~   71 (96)
T 2dmd_A           13 VCGKCFSRKDKLK--THMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHS-------------------DERPFKCQICP   71 (96)
T ss_dssp             TTTBCCCCHHHHH--HHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSC-------------------CCCCEECSSSS
T ss_pred             CCCCccCCHHHHH--HHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhC-------------------CCCCccCCCCC
Confidence            5777777777777  77777777777777777777777777777777775                   78899999999


Q ss_pred             cccccchhHhhhhccccccccC
Q 040287           83 LEFAIGQALGGHMRRHRAVALH  104 (162)
Q Consensus        83 k~F~~~~~L~~H~~~H~~~~~~  104 (162)
                      +.|.+...|..|+++|+++++.
T Consensus        72 ~~f~~~~~l~~H~~~h~~~~~p   93 (96)
T 2dmd_A           72 YASRNSSQLTVHLRSHTGDSGP   93 (96)
T ss_dssp             CEESSHHHHHHHHTTCCSCCCC
T ss_pred             CccCCHHHHHHHHHHhcCCCCC
Confidence            9999999999999999988763

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.79  E-value=5.2e-22  Score=142.14  Aligned_cols=139  Identities=15%  Similarity=0.239  Sum_probs=104.7

Q ss_pred             cchhhhhcCCCCCCccccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCC---------CCCcCccCCCC
Q 040287            2 ANCLMFMSQGGHFDAVNSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTG---------GGADTQQSPAK   72 (162)
Q Consensus         2 a~C~k~f~~~~~l~~~~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~---------~l~~h~~~h~~   72 (162)
                      ..|++.|.....|.  .|+++|.++++|.|++|++.|.....|..|++.|.++++|.|..         .|..|+++|.+
T Consensus        25 ~~C~~~f~~~~~l~--~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~  102 (190)
T 2i13_A           25 PECGKSFSRSDHLA--EHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTG  102 (190)
T ss_dssp             ------CCSSHHHH--HGGGCC---CCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHT
T ss_pred             CCCccccCCHHHHH--HHHHHcCCCCCccCCCcCchhCCHHHHHHHHHhcCCCCCccCcccCCccCCHHHHHHHHHhcCC
Confidence            36999999999898  99999999999999999999999999999999999999987542         45778999999


Q ss_pred             CCceecCCCccccccchhHhhhhccccccccCCCCcccccccCCCCchhhhcCCCcccccCCCCCCCCCchhhhhcc
Q 040287           73 PRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNEKVSTLTLSDTAPLVKKANSRRVLCLDLNLTPYENDLECHRLG  149 (162)
Q Consensus        73 ~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~nl~p~~~d~~~~~~~  149 (162)
                      +++|.|+.|++.|.+...|..|+++|+++++..+..+.......       ......+....+..|+.++++-..|.
T Consensus       103 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~-------~~L~~H~~~H~~~~~~~C~~C~~~f~  172 (190)
T 2i13_A          103 EKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSRE-------DNLHTHQRTHTGEKPYKCPECGKSFS  172 (190)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCH-------HHHHHHHHHHHCCCCEECTTTCCEES
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCCcccCCH-------HHHHHHHHhcCCCCCeECCCCCCccC
Confidence            99999999999999999999999999999998887765533211       11111222334456788887776663

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.79  E-value=8.7e-21  Score=119.90  Aligned_cols=79  Identities=24%  Similarity=0.520  Sum_probs=72.6

Q ss_pred             chhhhhcCCCCCCccccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCCc
Q 040287            3 NCLMFMSQGGHFDAVNSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVCG   82 (162)
Q Consensus         3 ~C~k~f~~~~~l~~~~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C~   82 (162)
                      .|++.|.....|.  .|+++|.++++|.|.+|++.|.....|..|+++|+                   +++||.|++|+
T Consensus        11 ~C~~~f~~~~~l~--~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------------~~~~~~C~~C~   69 (90)
T 1a1h_A           11 SCDRRFSQSGSLT--RHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT-------------------GEKPFACDICG   69 (90)
T ss_dssp             SCCCEESSHHHHH--HHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHH-------------------CCCCEECTTTC
T ss_pred             CCCCccCCHHHHH--HHHHHhCCCCCccCCCCCcccCCHHHHHHHHHHcC-------------------CCCCccCCCCC
Confidence            6999999988888  99999999999999999999999999999999887                   78899999999


Q ss_pred             cccccchhHhhhhccccccc
Q 040287           83 LEFAIGQALGGHMRRHRAVA  102 (162)
Q Consensus        83 k~F~~~~~L~~H~~~H~~~~  102 (162)
                      +.|.+.+.|.+|+++|++++
T Consensus        70 ~~f~~~~~l~~H~~~H~~~k   89 (90)
T 1a1h_A           70 RKFARSDERKRHTKIHLRQK   89 (90)
T ss_dssp             CEESSHHHHHHHHGGGGC--
T ss_pred             chhCCHHHHHHHHHHhcccC
Confidence            99999999999999999875

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.79  E-value=1.9e-20  Score=121.92  Aligned_cols=83  Identities=23%  Similarity=0.326  Sum_probs=69.3

Q ss_pred             cCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCC---------CCCcCccCCCCCCceecCCCccccccchhHhh
Q 040287           23 TAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTG---------GGADTQQSPAKPRTHECSVCGLEFAIGQALGG   93 (162)
Q Consensus        23 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~---------~l~~h~~~h~~~kp~~C~~C~k~F~~~~~L~~   93 (162)
                      ...+++|.|.+|++.|.....|..|++.|.++++|.|..         .|..|+++|.++++|.|.+|++.|.+...|.+
T Consensus        12 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~   91 (106)
T 2ee8_A           12 SKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAV   91 (106)
T ss_dssp             CCCCCCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCSSHHHHHH
T ss_pred             cCCCcCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCcccCHHHHHH
Confidence            456678888888888888888888888888888777432         34677888889999999999999999999999


Q ss_pred             hhccccccccCC
Q 040287           94 HMRRHRAVALHG  105 (162)
Q Consensus        94 H~~~H~~~~~~~  105 (162)
                      |+++|+++++..
T Consensus        92 H~~~H~~~~~~~  103 (106)
T 2ee8_A           92 HKTLHMQTSSPT  103 (106)
T ss_dssp             HHHHTTSCCCCC
T ss_pred             HHHHhCCCCCCc
Confidence            999999998853

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.78  E-value=1.5e-21  Score=129.50  Aligned_cols=95  Identities=17%  Similarity=0.315  Sum_probs=75.8

Q ss_pred             cchhhhhcCCCCCCccccccccCCCceeecC--ccCCccCChhHHHHHHHhcCCCCCCCCCC---------CCCcCccCC
Q 040287            2 ANCLMFMSQGGHFDAVNSVDMTAAGRVFECK--TCNRQFPSFQALGGHRASHKKPRLTDGTG---------GGADTQQSP   70 (162)
Q Consensus         2 a~C~k~f~~~~~l~~~~h~~~h~~~k~~~C~--~C~k~f~~~~~L~~H~~~h~~~~~~~~~~---------~l~~h~~~h   70 (162)
                      +.|++.|.....|.  .|+++|.++++|.|.  .|++.|.....|..|+++|+++++|.|..         .|..|+++|
T Consensus        12 ~~C~~~f~~~~~l~--~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h   89 (119)
T 2jp9_A           12 PGCNKRYFKLSHLQ--MHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTH   89 (119)
T ss_dssp             TTSCCCBSCHHHHH--HHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHH
T ss_pred             CCCcchhCCHHHHH--HHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCCccCchhCCHHHHHHHHHHh
Confidence            35999999888888  999999999999999  79999999999999999998777766432         345677777


Q ss_pred             CCCCceec--CCCccccccchhHhhhhccc
Q 040287           71 AKPRTHEC--SVCGLEFAIGQALGGHMRRH   98 (162)
Q Consensus        71 ~~~kp~~C--~~C~k~F~~~~~L~~H~~~H   98 (162)
                      .+++||.|  +.||+.|.+...|.+|+++|
T Consensus        90 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           90 TGEKPFSCRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             HTCCCEECCSTTCCCEESSHHHHHHHHHTC
T ss_pred             cCCCCeeCCCCCCccccCCHHHHHHHHhcC
Confidence            77777777  66777777777777777665

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.78  E-value=4.4e-21  Score=127.92  Aligned_cols=99  Identities=17%  Similarity=0.221  Sum_probs=85.2

Q ss_pred             cchhhhhcCCCCCCccccccccCCCceeecCccCCccCChhHHHHHHHh---cCCCCCCCCCC---------CCCcCccC
Q 040287            2 ANCLMFMSQGGHFDAVNSVDMTAAGRVFECKTCNRQFPSFQALGGHRAS---HKKPRLTDGTG---------GGADTQQS   69 (162)
Q Consensus         2 a~C~k~f~~~~~l~~~~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~---h~~~~~~~~~~---------~l~~h~~~   69 (162)
                      ..|++.|.....|.  .|+++|.++++|.|++|++.|.+...|..|++.   +.++++|.|..         .|..|+++
T Consensus        11 ~~C~~~f~~~~~l~--~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~   88 (124)
T 2dlq_A           11 PTCHKKFLSKYYLK--VHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVS   88 (124)
T ss_dssp             TTTCCCCSSHHHHH--HHHHHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCCCCcCCCHHHHH--HHHHhCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCccCCHHHHHHHHHH
Confidence            46999999988998  999999999999999999999999999999986   46677776432         45678889


Q ss_pred             CCCCCceecCCCccccccchhHhhhhc-cccccc
Q 040287           70 PAKPRTHECSVCGLEFAIGQALGGHMR-RHRAVA  102 (162)
Q Consensus        70 h~~~kp~~C~~C~k~F~~~~~L~~H~~-~H~~~~  102 (162)
                      |.+++||.|++|++.|.+...|.+|++ .|.++.
T Consensus        89 h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~  122 (124)
T 2dlq_A           89 HTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS  122 (124)
T ss_dssp             HSSSCSEECSSSCCEESSHHHHHHHHHHTSSCSS
T ss_pred             cCCCCCccCCCccchhCCHHHHHHHHHHHCCCCC
Confidence            999999999999999999999999987 576653

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.77  E-value=2.3e-20  Score=129.19  Aligned_cols=105  Identities=15%  Similarity=0.170  Sum_probs=86.0

Q ss_pred             cchhhhhcCCCCCCcccccc---ccCCCceeecCcc-----CCccCChhHHHHHHHhcCCCCCCCCC---C--------C
Q 040287            2 ANCLMFMSQGGHFDAVNSVD---MTAAGRVFECKTC-----NRQFPSFQALGGHRASHKKPRLTDGT---G--------G   62 (162)
Q Consensus         2 a~C~k~f~~~~~l~~~~h~~---~h~~~k~~~C~~C-----~k~f~~~~~L~~H~~~h~~~~~~~~~---~--------~   62 (162)
                      ..|++.|.....|.  .|++   +|.++++|.|.+|     ++.|.....|..|++.|+++++|.|.   +        .
T Consensus         7 ~~C~~~f~~~~~L~--~H~~~~h~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~   84 (155)
T 2gli_A            7 DGCSQEFDSQEQLV--HHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLEN   84 (155)
T ss_dssp             TTCCCBCSCHHHHH--HHHHHHTSSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCCCCCCCCSTTCCCCCSSHHH
T ss_pred             CCCccccCCHHHHH--HHHHhhccCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcCCCCCccCCCCCCCCcccCHHH
Confidence            36888898888888  8887   7888888888753     48899999999999998888888864   4        2


Q ss_pred             CCcCccCCCCCCceecCC--CccccccchhHhhhh-ccccccccCCCCc
Q 040287           63 GADTQQSPAKPRTHECSV--CGLEFAIGQALGGHM-RRHRAVALHGNEK  108 (162)
Q Consensus        63 l~~h~~~h~~~kp~~C~~--C~k~F~~~~~L~~H~-~~H~~~~~~~~~~  108 (162)
                      |..|+++|.+++||.|++  |+++|.+...|.+|+ ++|+++++..+..
T Consensus        85 l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  133 (155)
T 2gli_A           85 LKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKL  133 (155)
T ss_dssp             HHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTCSCCCEECCS
T ss_pred             HHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCCeeCCC
Confidence            457888888899999988  999999999999998 7888888877654

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.77  E-value=7.8e-20  Score=117.97  Aligned_cols=79  Identities=18%  Similarity=0.204  Sum_probs=71.6

Q ss_pred             hhhcCCCCCCccccccccCCCceeecCccCCccC-ChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCC-CCceecCCCcc
Q 040287            6 MFMSQGGHFDAVNSVDMTAAGRVFECKTCNRQFP-SFQALGGHRASHKKPRLTDGTGGGADTQQSPAK-PRTHECSVCGL   83 (162)
Q Consensus         6 k~f~~~~~l~~~~h~~~h~~~k~~~C~~C~k~f~-~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~-~kp~~C~~C~k   83 (162)
                      .+++....+.  .|+++|+++++|.|.+|++.|. ....|..|+++|+                   + ++||.|.+|++
T Consensus         4 ~s~~~~~~~~--~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~-------------------~~~~~~~C~~C~k   62 (98)
T 2gqj_A            4 GSSGPGGPEE--QWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQ-------------------KLQDALKCQHCRK   62 (98)
T ss_dssp             CCCCCCCSCS--HHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHH-------------------HHHHHHSCSSSCC
T ss_pred             CCCCCCCcHH--HHHHHhccCCCcCCCCCCCChhhhHHHHHHHHHHHc-------------------CCCCCEECCCCCC
Confidence            3556666676  9999999999999999999999 9999999999997                   5 78999999999


Q ss_pred             ccccchhHhhhhccccccccCC
Q 040287           84 EFAIGQALGGHMRRHRAVALHG  105 (162)
Q Consensus        84 ~F~~~~~L~~H~~~H~~~~~~~  105 (162)
                      .|.+...|.+|+++|+++++..
T Consensus        63 ~F~~~~~L~~H~~~h~~~kp~~   84 (98)
T 2gqj_A           63 QFKSKAGLNYHTMAEHSAKPSD   84 (98)
T ss_dssp             CCSCHHHHHHHHHHHSCSCSSC
T ss_pred             ccCCHHHHHHHHHHHcCCCCCC
Confidence            9999999999999999998843

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.76  E-value=3e-20  Score=115.33  Aligned_cols=78  Identities=22%  Similarity=0.490  Sum_probs=72.6

Q ss_pred             cchhhhhcCCCCCCccccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCC
Q 040287            2 ANCLMFMSQGGHFDAVNSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVC   81 (162)
Q Consensus         2 a~C~k~f~~~~~l~~~~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C   81 (162)
                      ..|++.|.....|.  .|+++|.++++|.|.+|++.|.....|..|++.|+                   ++++|.|++|
T Consensus         5 ~~C~~~f~~~~~l~--~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------------~~~~~~C~~C   63 (82)
T 2kmk_A            5 KICGKSFKRSSTLS--THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHT-------------------GEKPHKCQVC   63 (82)
T ss_dssp             SSSCCEESSHHHHH--HHHHHHHTCCCEECSSSCCEESSHHHHHHHHHHHH-------------------TCCCEECTTT
T ss_pred             CCCcccccCchhHH--HHHHHcCCCCCeeCCcCChhhCCHHHHHHHHHHhc-------------------CCCCCcCCCc
Confidence            36999999988888  99999999999999999999999999999999987                   7889999999


Q ss_pred             ccccccchhHhhhhccccc
Q 040287           82 GLEFAIGQALGGHMRRHRA  100 (162)
Q Consensus        82 ~k~F~~~~~L~~H~~~H~~  100 (162)
                      ++.|.+.+.|.+|+++|+|
T Consensus        64 ~~~f~~~~~l~~H~~~H~g   82 (82)
T 2kmk_A           64 GKAFSQSSNLITHSRKHTG   82 (82)
T ss_dssp             SCEESSHHHHHHHHHHHC-
T ss_pred             chhhCChHHHHHHHHhhCC
Confidence            9999999999999999975

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.76  E-value=4.4e-20  Score=132.05  Aligned_cols=109  Identities=17%  Similarity=0.210  Sum_probs=95.9

Q ss_pred             cchhhhhcCCCCCCccccccccCCCceeec--CccCCccCChhHHHHHHHhcCCCCCCCCC---C--------CCCcCc-
Q 040287            2 ANCLMFMSQGGHFDAVNSVDMTAAGRVFEC--KTCNRQFPSFQALGGHRASHKKPRLTDGT---G--------GGADTQ-   67 (162)
Q Consensus         2 a~C~k~f~~~~~l~~~~h~~~h~~~k~~~C--~~C~k~f~~~~~L~~H~~~h~~~~~~~~~---~--------~l~~h~-   67 (162)
                      ..|++.|.....|.  .|+++|+++++|.|  ++|++.|.....|..|+++|.++++|.|.   |        .|..|+ 
T Consensus        18 ~~C~~~f~~~~~L~--~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~   95 (190)
T 1tf6_A           18 ADCGAAYNKNWKLQ--AHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFN   95 (190)
T ss_dssp             TTTCCBCSSHHHHH--HHHHHHHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECCSSSCCCEESCHHHHHHHHH
T ss_pred             CCCcchhCCHHHHH--HHHHhcCCCCCccCCCCCCChhhCCHHHHHHHHHHccCCCceeCCCCCCCCccCCHHHHHHHHH
Confidence            47999999988888  99999999999999  88999999999999999999999998865   4        346787 


Q ss_pred             cCC-CCCCceec--CCCccccccchhHhhhhccccccccCCCCc--cccc
Q 040287           68 QSP-AKPRTHEC--SVCGLEFAIGQALGGHMRRHRAVALHGNEK--VSTL  112 (162)
Q Consensus        68 ~~h-~~~kp~~C--~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~--~~~~  112 (162)
                      +.| .++++|.|  +.|++.|.+...|..|+++|+++++..+..  +...
T Consensus        96 ~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~  145 (190)
T 1tf6_A           96 RFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKR  145 (190)
T ss_dssp             TTSSTTTSCCEECSSSSCEECSSHHHHHHHHGGGSSSCSSBCCSSSCCCB
T ss_pred             HhcCCCcceeeCCCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCCch
Confidence            677 57899999  889999999999999999999999988765  5543

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.75  E-value=1.1e-18  Score=106.22  Aligned_cols=67  Identities=22%  Similarity=0.446  Sum_probs=62.7

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCCccccccchhHhhhhcc
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVCGLEFAIGQALGGHMRR   97 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~   97 (162)
                      .+.++|+++++|.|++|++.|.....|..|+++|+                   +++||.|++|++.|.+...|.+|+++
T Consensus         4 ~~~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~-------------------~~~~~~C~~C~~~f~~~~~L~~H~~~   64 (72)
T 1x6e_A            4 GSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHT-------------------GEKPYKCLECGKAFSQNSGLINHQRI   64 (72)
T ss_dssp             CCCCTTTTCCCEECSSSCCEESSHHHHHHHHHGGG-------------------CSCCEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCCcccCCCCCccCCCCCCccCCHHHHHHHHHhcC-------------------CCCCeECCCCCcccCCHHHHHHHHHh
Confidence            46789999999999999999999999999999997                   78899999999999999999999999


Q ss_pred             cccccc
Q 040287           98 HRAVAL  103 (162)
Q Consensus        98 H~~~~~  103 (162)
                      |+++..
T Consensus        65 H~~~~~   70 (72)
T 1x6e_A           65 HTSGPS   70 (72)
T ss_dssp             HHSSSS
T ss_pred             cCCCCC
Confidence            998765

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.74  E-value=3.8e-19  Score=116.13  Aligned_cols=87  Identities=14%  Similarity=0.239  Sum_probs=75.3

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCC---------CCCcCccCCCCCCceecCCCccccccc
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTG---------GGADTQQSPAKPRTHECSVCGLEFAIG   88 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~---------~l~~h~~~h~~~kp~~C~~C~k~F~~~   88 (162)
                      .++++|+++++|.|.+|++.|.....|..|++.|.  ++|.|..         .|..|+. |.+++||.|.+|++.|.+.
T Consensus         6 s~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~--~~~~C~~C~~~f~~~~~l~~H~~-H~~~~~~~C~~C~~~f~~~   82 (107)
T 1wjp_A            6 SGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCR--NAAVCPYCSLRFFSPELKQEHES-KCEYKKLTCLECMRTFKSS   82 (107)
T ss_dssp             CCCCCCCCCCCCBCTTTCCBCSSHHHHHHHHHHHH--HSBCCTTTCCCBSSHHHHHHHHH-HCSTGGGEEGGGTEECSSH
T ss_pred             ccCcccCCCcCeECCCCCCccCCHHHHHHHHHHCC--CCccCCCCCCccCCHHHHHHHHH-cCCCCCccCccccchhCCH
Confidence            67789999999999999999999999999999984  5666432         3467885 9999999999999999999


Q ss_pred             hhHhhhhc-cccccccCCCC
Q 040287           89 QALGGHMR-RHRAVALHGNE  107 (162)
Q Consensus        89 ~~L~~H~~-~H~~~~~~~~~  107 (162)
                      ..|.+|++ +|.++++..+.
T Consensus        83 ~~L~~H~~~~H~~~~~~~~~  102 (107)
T 1wjp_A           83 FSIWRHQVEVHNQNNMAPTS  102 (107)
T ss_dssp             HHHHHHHHHTSCCCCCCCCC
T ss_pred             HHHHHHHHHHcCCCCCCCCC
Confidence            99999997 89999886543

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.74  E-value=5.6e-18  Score=105.93  Aligned_cols=78  Identities=21%  Similarity=0.373  Sum_probs=68.6

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCCccccccchhHhhhhcc
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVCGLEFAIGQALGGHMRR   97 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~   97 (162)
                      .|+++|+++++|.|.+|++.|.....|..|++.|.....               .+++|.|.+|++.|.+...|.+|+++
T Consensus         5 ~H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~---------------~~~~~~C~~C~~~f~~~~~L~~H~~~   69 (86)
T 1x6h_A            5 SSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNF---------------VPAAFVCSKCGKTFTRRNTMARHADN   69 (86)
T ss_dssp             CCSTTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSSC---------------CCCCEECSSSCCEESCHHHHHHHHHH
T ss_pred             cccceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCcC---------------CCcceECCCCCChhCCHHHHHHHHHH
Confidence            899999999999999999999999999999988763311               24799999999999999999999999


Q ss_pred             ccccccCCCCccc
Q 040287           98 HRAVALHGNEKVS  110 (162)
Q Consensus        98 H~~~~~~~~~~~~  110 (162)
                      |+++++..+....
T Consensus        70 h~~~~~~~~~~~~   82 (86)
T 1x6h_A           70 CAGPDGVEGENSG   82 (86)
T ss_dssp             CCCCCSCCCCCCC
T ss_pred             ccCCCCcccCCCC
Confidence            9999887665543

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.74  E-value=1e-19  Score=125.84  Aligned_cols=96  Identities=14%  Similarity=0.232  Sum_probs=86.4

Q ss_pred             chhhhhcCCCCCCccccccccCCCceeecCc--cCCccCChhHHHHHHHhcCCCCCCCCC---C--------CCCcCc-c
Q 040287            3 NCLMFMSQGGHFDAVNSVDMTAAGRVFECKT--CNRQFPSFQALGGHRASHKKPRLTDGT---G--------GGADTQ-Q   68 (162)
Q Consensus         3 ~C~k~f~~~~~l~~~~h~~~h~~~k~~~C~~--C~k~f~~~~~L~~H~~~h~~~~~~~~~---~--------~l~~h~-~   68 (162)
                      .|++.|.....|.  .|+++|.++++|.|.+  |++.|.....|..|+++|+++++|.|.   |        .|..|+ +
T Consensus        44 ~c~~~f~~~~~l~--~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~  121 (155)
T 2gli_A           44 RELRPFKAQYMLV--VHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNR  121 (155)
T ss_dssp             TTTCCCSSHHHHH--HHTHHHHCCCCCCCCSTTCCCCCSSHHHHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHH
T ss_pred             chhhhhhhHHHHH--HHHHhcCCCCCccCCCCCCCCcccCHHHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHH
Confidence            3568998888888  9999999999999985  999999999999999999999998765   4        567898 7


Q ss_pred             CCCCCCceecCC--CccccccchhHhhhhccccc
Q 040287           69 SPAKPRTHECSV--CGLEFAIGQALGGHMRRHRA  100 (162)
Q Consensus        69 ~h~~~kp~~C~~--C~k~F~~~~~L~~H~~~H~~  100 (162)
                      +|.+++||.|++  |+++|.+.+.|..|+++|+|
T Consensus       122 ~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~hhg  155 (155)
T 2gli_A          122 THSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG  155 (155)
T ss_dssp             TTCSCCCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             hcCCCCCeeCCCCCCccccCCHHHHHHHHHhhcC
Confidence            999999999988  99999999999999999875

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.73  E-value=5.3e-19  Score=111.37  Aligned_cols=77  Identities=23%  Similarity=0.500  Sum_probs=71.2

Q ss_pred             cchhhhhcCCCCCCccccccccCCCceeecC--ccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecC
Q 040287            2 ANCLMFMSQGGHFDAVNSVDMTAAGRVFECK--TCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECS   79 (162)
Q Consensus         2 a~C~k~f~~~~~l~~~~h~~~h~~~k~~~C~--~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~   79 (162)
                      +.|++.|.....|.  .|+++|.++++|.|.  .|++.|.....|..|+++|+                   +++||.|+
T Consensus        11 ~~C~~~f~~~~~l~--~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~-------------------~~~~~~C~   69 (89)
T 2wbs_A           11 AGCGKTYTKSSHLK--AHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT-------------------GHRPFQCQ   69 (89)
T ss_dssp             TTTCCEESSHHHHH--HHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHH-------------------CCCCEECS
T ss_pred             CCCCCcCCCHHHHH--HHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcC-------------------CCCCccCC
Confidence            46999999988888  999999999999997  69999999999999999987                   78899999


Q ss_pred             CCccccccchhHhhhhcccc
Q 040287           80 VCGLEFAIGQALGGHMRRHR   99 (162)
Q Consensus        80 ~C~k~F~~~~~L~~H~~~H~   99 (162)
                      +|++.|.+.+.|..|+++|.
T Consensus        70 ~C~~~f~~~~~l~~H~~~H~   89 (89)
T 2wbs_A           70 KCDRAFSRSDHLALHMKRHF   89 (89)
T ss_dssp             SSSCEESSHHHHHHHGGGGC
T ss_pred             CCCcccCCHHHHHHHHHhhC
Confidence            99999999999999999984

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.73  E-value=7.6e-19  Score=112.02  Aligned_cols=82  Identities=20%  Similarity=0.388  Sum_probs=70.5

Q ss_pred             cchhhhhcCCCCCCccccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCC
Q 040287            2 ANCLMFMSQGGHFDAVNSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVC   81 (162)
Q Consensus         2 a~C~k~f~~~~~l~~~~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C   81 (162)
                      ..|++.|.....|.  .|+++|.++++|.|.+|++.|.....|..|++.|+++                 .+++|.|++|
T Consensus        11 ~~C~~~f~~~~~l~--~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~-----------------~~~~~~C~~C   71 (95)
T 2yt9_A           11 EICGKIFRDVYHLN--RHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS-----------------VGKPYICQSC   71 (95)
T ss_dssp             SSSCCEESSSHHHH--HHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCC-----------------CCSSBCCSSS
T ss_pred             CCCCCccCChHHHH--HHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCC-----------------CCCceECCCc
Confidence            36888998888888  8999999999999999999999999999999888732                 2389999999


Q ss_pred             ccccccchhHhhhhc-cccccc
Q 040287           82 GLEFAIGQALGGHMR-RHRAVA  102 (162)
Q Consensus        82 ~k~F~~~~~L~~H~~-~H~~~~  102 (162)
                      ++.|.+...|..|++ +|.++.
T Consensus        72 ~~~f~~~~~L~~H~~~~H~~~~   93 (95)
T 2yt9_A           72 GKGFSRPDHLNGHIKQVHSGPS   93 (95)
T ss_dssp             CCCBSSHHHHHHHHHHTSCCCS
T ss_pred             cchhCCHHHHHHHHHHhcCCCC
Confidence            999999999999986 787654

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.72  E-value=2.2e-19  Score=128.38  Aligned_cols=97  Identities=19%  Similarity=0.237  Sum_probs=87.3

Q ss_pred             cchhhhhcCCCCCCccccccccCCCceeecC--ccCCccCChhHHHHHH-Hhc-CCCCCCCC--C-C--------CCCcC
Q 040287            2 ANCLMFMSQGGHFDAVNSVDMTAAGRVFECK--TCNRQFPSFQALGGHR-ASH-KKPRLTDG--T-G--------GGADT   66 (162)
Q Consensus         2 a~C~k~f~~~~~l~~~~h~~~h~~~k~~~C~--~C~k~f~~~~~L~~H~-~~h-~~~~~~~~--~-~--------~l~~h   66 (162)
                      ..|++.|.....|.  .|+++|.++++|.|.  .|++.|.+...|..|+ +.| .++++|.|  . |        .|..|
T Consensus        48 ~~C~~~f~~~~~l~--~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H  125 (190)
T 1tf6_A           48 EGCEKGFTSLHHLT--RHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVH  125 (190)
T ss_dssp             TTCCCCCSSHHHHH--HHHTTTTTCCCEECCSSSCCCEESCHHHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHH
T ss_pred             CCCChhhCCHHHHH--HHHHHccCCCceeCCCCCCCCccCCHHHHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHH
Confidence            46999999999999  999999999999999  8999999999999999 667 46677765  2 2        45789


Q ss_pred             ccCCCCCCceecCC--CccccccchhHhhhhccccc
Q 040287           67 QQSPAKPRTHECSV--CGLEFAIGQALGGHMRRHRA  100 (162)
Q Consensus        67 ~~~h~~~kp~~C~~--C~k~F~~~~~L~~H~~~H~~  100 (162)
                      +++|++++||.|++  |+++|.+.+.|.+|+++|++
T Consensus       126 ~~~H~~~~~~~C~~~~C~k~F~~~~~L~~H~~~H~~  161 (190)
T 1tf6_A          126 QFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG  161 (190)
T ss_dssp             HGGGSSSCSSBCCSSSCCCBCSSHHHHHHHHTSSCS
T ss_pred             HHHhCCCCCccCCCCCCCchhcCHHHHHHHHHHhCC
Confidence            99999999999988  99999999999999999988

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.72  E-value=1.3e-17  Score=102.58  Aligned_cols=69  Identities=26%  Similarity=0.484  Sum_probs=63.4

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCCccccccchhHhhhhcc
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVCGLEFAIGQALGGHMRR   97 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~   97 (162)
                      .+...+.++++|.|.+|++.|.....|..|+++|+                   +++||.|++|++.|.+...|.+|+++
T Consensus         8 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------------~~~~~~C~~C~~~f~~~~~L~~H~~~   68 (77)
T 2cot_A            8 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHT-------------------GEKPYKCDECGKAFIQRSHLIGHHRV   68 (77)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTC-------------------CSCSEECSSSCCEESSHHHHHHHGGG
T ss_pred             CCcCcCCCCCCEECCCCCcccCCHHHHHHHHHHcC-------------------CCcCeeCCCCCCccCCHHHHHHHHHH
Confidence            45567888999999999999999999999999886                   78899999999999999999999999


Q ss_pred             ccccccCC
Q 040287           98 HRAVALHG  105 (162)
Q Consensus        98 H~~~~~~~  105 (162)
                      |++++++.
T Consensus        69 H~~~~p~~   76 (77)
T 2cot_A           69 HTGSGPSS   76 (77)
T ss_dssp             SCCCCCCC
T ss_pred             hCCCCCCC
Confidence            99998854

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.72  E-value=6.9e-19  Score=113.15  Aligned_cols=77  Identities=22%  Similarity=0.563  Sum_probs=60.3

Q ss_pred             chhhhhcCCCCCCccccccccCCCceeecC--ccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCC
Q 040287            3 NCLMFMSQGGHFDAVNSVDMTAAGRVFECK--TCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSV   80 (162)
Q Consensus         3 ~C~k~f~~~~~l~~~~h~~~h~~~k~~~C~--~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~   80 (162)
                      .|++.|.....|.  .|+++|.++++|.|.  .|++.|.....|..|+++|+                   +++||.|++
T Consensus        22 ~C~~~f~~~~~l~--~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~-------------------~~~~~~C~~   80 (100)
T 2ebt_A           22 GCTKVYTKSSHLK--AHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHT-------------------GAKPFQCGV   80 (100)
T ss_dssp             SCCCEESCHHHHH--HHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHT-------------------SCCSCBCSS
T ss_pred             CCCCcccCHHHHH--HHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhC-------------------CCCCeECCC
Confidence            4677776666666  677777777777774  47777777777777777665                   788999999


Q ss_pred             CccccccchhHhhhhccccc
Q 040287           81 CGLEFAIGQALGGHMRRHRA  100 (162)
Q Consensus        81 C~k~F~~~~~L~~H~~~H~~  100 (162)
                      |++.|.+...|..|+++|++
T Consensus        81 C~~~f~~~~~l~~H~~~H~~  100 (100)
T 2ebt_A           81 CNRSFSRSDHLALHMKRHQN  100 (100)
T ss_dssp             SCCBCSSHHHHHHHHHHHCC
T ss_pred             CcCccCCHHHHHHHHHHhCC
Confidence            99999999999999999974

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.72  E-value=8.9e-18  Score=105.66  Aligned_cols=65  Identities=20%  Similarity=0.374  Sum_probs=59.1

Q ss_pred             cccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCCccccccchhHhhhh-cc
Q 040287           19 SVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVCGLEFAIGQALGGHM-RR   97 (162)
Q Consensus        19 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~-~~   97 (162)
                      .+.++...++|.|++|++.|.....|.+|+++|+                   +++||.|++|+++|.+...|.+|+ ++
T Consensus        19 ~~~~~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~-------------------~~k~~~C~~C~k~F~~~~~L~~H~~~~   79 (85)
T 2lv2_A           19 VLGLSASAECHLCPVCGESFASKGAQERHLRLLH-------------------AAQVFPCKYCPATFYSSPGLTRHINKC   79 (85)
T ss_dssp             CCSSCCCCTTEECTTSCCEESSHHHHHHHHHTTS-------------------CSSSEECTTSSCEESSHHHHHHHHHTT
T ss_pred             CCCCCCCCCCEECCCCCCCcCcHHHHhhhhhhcc-------------------CCCccCCCCCCCEeCCHHHHHHhCccc
Confidence            3467888899999999999999999999999997                   788999999999999999999997 57


Q ss_pred             ccccc
Q 040287           98 HRAVA  102 (162)
Q Consensus        98 H~~~~  102 (162)
                      |++|.
T Consensus        80 H~~E~   84 (85)
T 2lv2_A           80 HPSEN   84 (85)
T ss_dssp             CTTCC
T ss_pred             CcCCC
Confidence            98764

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.72  E-value=2.9e-19  Score=117.12  Aligned_cols=80  Identities=14%  Similarity=0.252  Sum_probs=67.8

Q ss_pred             ccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCC---------CCCcCccCCCCCCceecCCCccccccchhHh
Q 040287           22 MTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTG---------GGADTQQSPAKPRTHECSVCGLEFAIGQALG   92 (162)
Q Consensus        22 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~---------~l~~h~~~h~~~kp~~C~~C~k~F~~~~~L~   92 (162)
                      .|+++++|.| .|++.|.....|..|++.|.++++|.|..         .|..|+++|.++++|.|++|++.|.+...|.
T Consensus         4 ~h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~   82 (110)
T 2csh_A            4 GSSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFH   82 (110)
T ss_dssp             CCCCCCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEESCHHHHH
T ss_pred             CCCCCCCEec-cCCCccCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcchhcCHHHHH
Confidence            5778888888 88888888888888888888888876432         3467888888999999999999999999999


Q ss_pred             hhhccccccc
Q 040287           93 GHMRRHRAVA  102 (162)
Q Consensus        93 ~H~~~H~~~~  102 (162)
                      +|+++|....
T Consensus        83 ~H~~~~~~~~   92 (110)
T 2csh_A           83 RHVTSCTKSY   92 (110)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHccccc
Confidence            9999987653

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.72  E-value=1.4e-17  Score=102.41  Aligned_cols=68  Identities=21%  Similarity=0.413  Sum_probs=60.1

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHH-hcCCCCCCCCCCCCCcCccCCCCCCceecCCCccccccchhHhhhhc
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRA-SHKKPRLTDGTGGGADTQQSPAKPRTHECSVCGLEFAIGQALGGHMR   96 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~-~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~   96 (162)
                      +|+++|+++++|.|++|++.|.....|..|++ .|.+                  ++++|.|++|++.|.+...|.+|++
T Consensus         5 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~------------------~~~~~~C~~C~~~f~~~~~L~~H~~   66 (77)
T 2ct1_A            5 SSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTE------------------NVAKFHCPHCDTVIARKSDLGVHLR   66 (77)
T ss_dssp             CCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSS------------------SCSSEECSSSSCEESSHHHHHHHHH
T ss_pred             ccccccCCCCCeECCCcCchhCCHHHHHHHHHHhcCC------------------CCCccCCCCCCCccCCHHHHHHHHH
Confidence            89999999999999999999999999999997 5651                  2479999999999999999999999


Q ss_pred             cccc-ccc
Q 040287           97 RHRA-VAL  103 (162)
Q Consensus        97 ~H~~-~~~  103 (162)
                      +|.+ +.|
T Consensus        67 ~~H~~~~p   74 (77)
T 2ct1_A           67 KQHSYSGP   74 (77)
T ss_dssp             HTSCCSCC
T ss_pred             HhCCCCCC
Confidence            8554 444

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.72  E-value=4.6e-20  Score=125.63  Aligned_cols=91  Identities=11%  Similarity=0.084  Sum_probs=77.9

Q ss_pred             chhhhhcCCCCCCccccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCC---------CCCcCccCCCCC
Q 040287            3 NCLMFMSQGGHFDAVNSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTG---------GGADTQQSPAKP   73 (162)
Q Consensus         3 ~C~k~f~~~~~l~~~~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~---------~l~~h~~~h~~~   73 (162)
                      .|++.|.....|.  .|+++|+++++|.|++|++.|.....|..|+++|++++||.|..         .|..|+++|.++
T Consensus        27 ~C~k~F~~~~~L~--~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~hh~~  104 (133)
T 2lt7_A           27 VCKRSYVCLTSLR--RHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSHIKSVHSQ  104 (133)
T ss_dssp             TTCCEESCHHHHH--HHHHHHHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCCEEESSSCCEESSHHHHHHHHHHHTCC
T ss_pred             CCCCCcCCHHHHH--HHHHHcCCCCCeeCCccCeecccccchhhhccccCCCccccCCCCCCCcCCHHHHHHHhHHhcCC
Confidence            6999999999999  99999999999999999999999999999999999999988432         457788877665


Q ss_pred             ------CceecCCCccccccchhHhhhhccccccc
Q 040287           74 ------RTHECSVCGLEFAIGQALGGHMRRHRAVA  102 (162)
Q Consensus        74 ------kp~~C~~C~k~F~~~~~L~~H~~~H~~~~  102 (162)
                            ++|+|.+|++.|.       |+++|++++
T Consensus       105 ~p~~~~k~~~C~~C~k~~~-------~~~~h~~ek  132 (133)
T 2lt7_A          105 DPSGDSKLYRLHPCRSLQI-------RQYAYLSDR  132 (133)
T ss_dssp             CTTSSSCCEEECCCCSSCC-------CCCHHHHCC
T ss_pred             CCCCCCCCeecCCCCchhh-------hcccccccC
Confidence                  5689999998875       455666654

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.71  E-value=7.8e-18  Score=102.79  Aligned_cols=64  Identities=25%  Similarity=0.543  Sum_probs=59.8

Q ss_pred             cccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCCccccccchhHhhhhccccc
Q 040287           21 DMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRA  100 (162)
Q Consensus        21 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~  100 (162)
                      ..+.++++|.|.+|++.|.....|..|+++|+                   +++||.|.+|++.|.+...|.+|+++|++
T Consensus        10 ~~~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~-------------------~~~~~~C~~C~k~f~~~~~L~~H~~~H~~   70 (74)
T 2lce_A           10 HMTHSDKPYKCDRCQASFRYKGNLASHKTVHT-------------------GEKPYRCNICGAQFNRPANLKTHTRIHSG   70 (74)
T ss_dssp             -CCCCCCSBCCTTSSCCBSCHHHHHHHHHHHC-------------------CCCSEECTTTCCEESCHHHHHHHHHHHCC
T ss_pred             cccCCCCCeECCCCCceeCCHHHHHHHHHHcC-------------------CCCCEECCCCCchhCCHHHHHHHHHhcCC
Confidence            45778999999999999999999999999997                   78899999999999999999999999999


Q ss_pred             ccc
Q 040287          101 VAL  103 (162)
Q Consensus       101 ~~~  103 (162)
                      ++|
T Consensus        71 ~kp   73 (74)
T 2lce_A           71 EKP   73 (74)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            876

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.71  E-value=1e-17  Score=101.22  Aligned_cols=63  Identities=22%  Similarity=0.384  Sum_probs=59.7

Q ss_pred             ccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCCccccccchhHhhhhcccccc
Q 040287           22 MTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAV  101 (162)
Q Consensus        22 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~  101 (162)
                      .|+++++|.|.+|++.|.....|..|+++|+                   +++||.|++|++.|.+...|.+|+++|+++
T Consensus         3 s~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------------~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~   63 (70)
T 1x5w_A            3 SGSSGHPEKCSECSYSCSSKAALRIHERIHC-------------------TDRPFKCNYCSFDTKQPSNLSKHMKKFHGD   63 (70)
T ss_dssp             SCCCCCSEECSSSSCEESSHHHHHHHHGGGC-------------------CSCSEECSSSSCEESSHHHHHHHHHHHHSS
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHcC-------------------CCCCEeCCCCCCccCCHHHHHHHHHHHhCC
Confidence            4788999999999999999999999999997                   788999999999999999999999999998


Q ss_pred             cc
Q 040287          102 AL  103 (162)
Q Consensus       102 ~~  103 (162)
                      ++
T Consensus        64 ~p   65 (70)
T 1x5w_A           64 MS   65 (70)
T ss_dssp             SC
T ss_pred             CC
Confidence            87

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.68  E-value=3e-17  Score=101.12  Aligned_cols=67  Identities=19%  Similarity=0.388  Sum_probs=58.6

Q ss_pred             ccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCCccccccchhHhhhhc-cccc
Q 040287           22 MTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVCGLEFAIGQALGGHMR-RHRA  100 (162)
Q Consensus        22 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~-~H~~  100 (162)
                      .|+++++|.|.+|++.|.....|..|+++|+++.                ++++|.|.+|++.|.+...|.+|++ .|.+
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~----------------~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~   64 (78)
T 2d9h_A            1 GSSGSSGLQCEICGFTCRQKASLNWHQRKHAETV----------------AALRFPCEFCGKRFEKPDSVAAHRSKSHPA   64 (78)
T ss_dssp             CCCSCCCEECSSSCCEESSHHHHHHHHHHHHHHT----------------TTCCEECTTTCCEESSHHHHHHHHHHTSTT
T ss_pred             CCCCCcCeECCCCCCeeCCHHHHHHHHHHhhccC----------------CCcccCCCCCCchhCCHHHHHHHHHHhCCC
Confidence            4889999999999999999999999999997321                3789999999999999999999994 6777


Q ss_pred             cccC
Q 040287          101 VALH  104 (162)
Q Consensus       101 ~~~~  104 (162)
                      +.+.
T Consensus        65 ~~~~   68 (78)
T 2d9h_A           65 LLLA   68 (78)
T ss_dssp             TSSC
T ss_pred             CCCC
Confidence            7663

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.68  E-value=2.1e-17  Score=98.54  Aligned_cols=63  Identities=19%  Similarity=0.425  Sum_probs=57.0

Q ss_pred             ccccCCCceeecCccCCccCChhHHHHHHHh-cCCCCCCCCCCCCCcCccCCCCCCceecCCCccccccchhHhhhhccc
Q 040287           20 VDMTAAGRVFECKTCNRQFPSFQALGGHRAS-HKKPRLTDGTGGGADTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRH   98 (162)
Q Consensus        20 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~-h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H   98 (162)
                      +++|+++++|.|++|++.|.....|..|++. |.                  .+++||.|+.|++.|.+.+.|.+|+++|
T Consensus         2 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~------------------~~~~~~~C~~C~k~f~~~~~L~~H~~~~   63 (66)
T 2drp_A            2 EFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHK------------------RNVKVYPCPFCFKEFTRKDNMTAHVKII   63 (66)
T ss_dssp             -CEEEETTEEECTTTCCEESSHHHHHHHHHHHSS------------------SSCCCEECTTTCCEESCHHHHHHHHHHH
T ss_pred             ccccCCCcceECCCCcchhCCHHHHHHHHHHHcC------------------CCCcCeECCCCCCccCCHHHHHHHHHHH
Confidence            4689999999999999999999999999998 62                  1688999999999999999999999998


Q ss_pred             cc
Q 040287           99 RA  100 (162)
Q Consensus        99 ~~  100 (162)
                      ++
T Consensus        64 H~   65 (66)
T 2drp_A           64 HK   65 (66)
T ss_dssp             TC
T ss_pred             cC
Confidence            75

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.68  E-value=3.3e-18  Score=113.16  Aligned_cols=84  Identities=19%  Similarity=0.329  Sum_probs=76.5

Q ss_pred             cCCCceeecCc--cCCccCChhHHHHHHHhcCCCCCCCCC---C--------CCCcCccCCCCCCceecCCCccccccch
Q 040287           23 TAAGRVFECKT--CNRQFPSFQALGGHRASHKKPRLTDGT---G--------GGADTQQSPAKPRTHECSVCGLEFAIGQ   89 (162)
Q Consensus        23 h~~~k~~~C~~--C~k~f~~~~~L~~H~~~h~~~~~~~~~---~--------~l~~h~~~h~~~kp~~C~~C~k~F~~~~   89 (162)
                      ++++++|.|.+  |++.|.....|..|++.|.++++|.|.   |        .|..|+++|.++++|.|++|++.|.+..
T Consensus         1 a~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~   80 (119)
T 2jp9_A            1 ASEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSD   80 (119)
T ss_dssp             CCSSCCBCCCSTTSCCCBSCHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHH
T ss_pred             CCCCeeeeCCCCCCcchhCCHHHHHHHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCCccCchhCCHH
Confidence            35789999997  999999999999999999999998875   5        3467899999999999999999999999


Q ss_pred             hHhhhhccccccccCCC
Q 040287           90 ALGGHMRRHRAVALHGN  106 (162)
Q Consensus        90 ~L~~H~~~H~~~~~~~~  106 (162)
                      .|.+|+++|+++++..+
T Consensus        81 ~l~~H~~~h~~~~~~~C   97 (119)
T 2jp9_A           81 HLKTHTRTHTGEKPFSC   97 (119)
T ss_dssp             HHHHHHHHHHTCCCEEC
T ss_pred             HHHHHHHHhcCCCCeeC
Confidence            99999999999988766

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.67  E-value=1.2e-17  Score=107.39  Aligned_cols=75  Identities=17%  Similarity=0.267  Sum_probs=65.3

Q ss_pred             hhcCCCCCCccccccccCCCceeecCccCCcc-CChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCCcccc
Q 040287            7 FMSQGGHFDAVNSVDMTAAGRVFECKTCNRQF-PSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVCGLEF   85 (162)
Q Consensus         7 ~f~~~~~l~~~~h~~~h~~~k~~~C~~C~k~f-~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C~k~F   85 (162)
                      .|.....+.  .|+++|.++++|.|++|++.| .....|..|+++|                    +++||.|.+||+.|
T Consensus        15 ~~~~~~~~~--~~~~~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h--------------------~~k~~~C~~Cgk~F   72 (96)
T 2ctd_A           15 VYAAGSLEE--QWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENC--------------------KQEMFTCHHCGKQL   72 (96)
T ss_dssp             SSCTTCHHH--HHHHHHHHTSCEECTTTCSCEESSHHHHHHHHHHH--------------------CCCCCCCSSSCCCC
T ss_pred             CCCCchHHH--HHHHHhcCCCCcCCCCCCCCcccCHHHHHHHHHHH--------------------CCCCeECCCCCCee
Confidence            444455555  888999999999999999999 9999999999998                    35689999999999


Q ss_pred             ccchhHhhh-hcccccccc
Q 040287           86 AIGQALGGH-MRRHRAVAL  103 (162)
Q Consensus        86 ~~~~~L~~H-~~~H~~~~~  103 (162)
                      .+...|..| +++|+++..
T Consensus        73 ~~~~~L~~H~~~~H~~~p~   91 (96)
T 2ctd_A           73 RSLAGMKYHVMANHNSLPS   91 (96)
T ss_dssp             SSHHHHHHHHHHHTCCCSS
T ss_pred             CCHHHHHHHhHHhcCCCCC
Confidence            999999999 999986544

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.65  E-value=9.2e-17  Score=104.36  Aligned_cols=72  Identities=19%  Similarity=0.256  Sum_probs=62.7

Q ss_pred             cccCCCceeecCccCCccCChhHHHHHHH-hcCCCCCCCCCCCCCcCccCCCCCCceecCCCccccccchhHhhh-hccc
Q 040287           21 DMTAAGRVFECKTCNRQFPSFQALGGHRA-SHKKPRLTDGTGGGADTQQSPAKPRTHECSVCGLEFAIGQALGGH-MRRH   98 (162)
Q Consensus        21 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~-~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H-~~~H   98 (162)
                      ..-++++||.|.+|++.|..+..|..|++ .|++.                .+++||.|.+||++|.+.+.|.+| +++|
T Consensus        11 ~~~~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~----------------~~ekpf~C~~Cgk~F~~~~~L~~H~~r~H   74 (102)
T 2ghf_A           11 QNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNV----------------VLNSSYVCVECNFLTKRYDALSEHNLKYH   74 (102)
T ss_dssp             TCCCCCSSEECSSCSCEESCHHHHHHHHHHHCSSC----------------CCSCCEEETTTTEEESSTHHHHTHHHHTS
T ss_pred             ccCCCCcCcCCCCCCCccCCHHHHHHHHHhhCCCC----------------CCCCCcCCCCCCcccCCHHHHHHHHHHhc
Confidence            34578999999999999999999999997 58431                168899999999999999999999 8999


Q ss_pred             cccccCCCCc
Q 040287           99 RAVALHGNEK  108 (162)
Q Consensus        99 ~~~~~~~~~~  108 (162)
                      ++++|+.+..
T Consensus        75 tgekpy~C~~   84 (102)
T 2ghf_A           75 PGEENFKLTM   84 (102)
T ss_dssp             TTCCCEEEEE
T ss_pred             CCCCCeeCCc
Confidence            9999976554

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.65  E-value=4.9e-17  Score=108.10  Aligned_cols=88  Identities=22%  Similarity=0.263  Sum_probs=77.4

Q ss_pred             CCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCC---------CCCcCcc---CCCCCCceecCCCccccccchhH
Q 040287           24 AAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTG---------GGADTQQ---SPAKPRTHECSVCGLEFAIGQAL   91 (162)
Q Consensus        24 ~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~---------~l~~h~~---~h~~~kp~~C~~C~k~F~~~~~L   91 (162)
                      +++++|.|.+|++.|.....|..|++.|.++++|.|..         .|..|+.   .+.++++|.|++|++.|.+...|
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~~~~~l   82 (124)
T 2dlq_A            3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMEL   82 (124)
T ss_dssp             CCCSSCCCTTTCCCCSSHHHHHHHHHHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCEESSHHHH
T ss_pred             CCCCCCCCCCCCCcCCCHHHHHHHHHhCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCccCCHHHH
Confidence            57889999999999999999999999999999988543         3456776   46889999999999999999999


Q ss_pred             hhhhccccccccCCCCcccc
Q 040287           92 GGHMRRHRAVALHGNEKVST  111 (162)
Q Consensus        92 ~~H~~~H~~~~~~~~~~~~~  111 (162)
                      ..|+++|+++++..+..+..
T Consensus        83 ~~H~~~h~~~~~~~C~~C~~  102 (124)
T 2dlq_A           83 RLHMVSHTGEMPYKCSSCSQ  102 (124)
T ss_dssp             HHHHHHHSSSCSEECSSSCC
T ss_pred             HHHHHHcCCCCCccCCCccc
Confidence            99999999999987776554

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.64  E-value=9.3e-17  Score=92.89  Aligned_cols=57  Identities=26%  Similarity=0.433  Sum_probs=50.0

Q ss_pred             CCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCCccccccchhHhhhhccccc
Q 040287           25 AGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRA  100 (162)
Q Consensus        25 ~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~  100 (162)
                      ++++|.|.+|++.|.....|..|+++|+                   +++||.|++|++.|.+...|.+|+++|++
T Consensus         1 g~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------------~~~~~~C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNYYLNIHLRTHT-------------------GEKPYKCEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             ----CBCTTTCCBCSCHHHHHHHHHHHH-------------------CCCCEECSSSSCEESSHHHHHHHHHHHC-
T ss_pred             CCCCccCCCCcchhCChHHHHHHHHHcC-------------------CCCCcCCCCCcchhCCHHHHHHHHHHhcC
Confidence            4689999999999999999999999997                   78899999999999999999999998864

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.63  E-value=3e-16  Score=90.73  Aligned_cols=56  Identities=21%  Similarity=0.453  Sum_probs=53.0

Q ss_pred             eeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCCccccccchhHhhhhccccccc
Q 040287           28 VFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVA  102 (162)
Q Consensus        28 ~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~  102 (162)
                      ||.|++|++.|.....|..|+++|+                   +++||.|++|+++|.+.+.|.+|+++|++++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~-------------------~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHT-------------------DVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTS-------------------SCCCEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcC-------------------CCCCccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            6899999999999999999999997                   7889999999999999999999999998875

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.59  E-value=6.1e-17  Score=100.77  Aligned_cols=74  Identities=16%  Similarity=0.259  Sum_probs=68.8

Q ss_pred             cchhhhhcCCCCCCccccccccCCCceeecCc--cCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecC
Q 040287            2 ANCLMFMSQGGHFDAVNSVDMTAAGRVFECKT--CNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECS   79 (162)
Q Consensus         2 a~C~k~f~~~~~l~~~~h~~~h~~~k~~~C~~--C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~   79 (162)
                      ..|++.|.....|.  .|+++|.++++|.|++  |++.|.....|..|+++|+                   +   |.|.
T Consensus         7 ~~C~~~f~~~~~l~--~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~-------------------~---~~C~   62 (85)
T 2j7j_A            7 ENCGKAFKKHNQLK--VHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA-------------------G---YPCK   62 (85)
T ss_dssp             TTCCCEESSHHHHH--HHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHH-------------------S---EECC
T ss_pred             CCCCcccCCHHHHH--HHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhC-------------------C---CCCC
Confidence            46999999999998  9999999999999988  9999999999999999996                   4   9999


Q ss_pred             C---CccccccchhHhhhhcccc
Q 040287           80 V---CGLEFAIGQALGGHMRRHR   99 (162)
Q Consensus        80 ~---C~k~F~~~~~L~~H~~~H~   99 (162)
                      .   |++.|.+...|.+|+++|+
T Consensus        63 ~~~~C~~~f~~~~~l~~H~~~hh   85 (85)
T 2j7j_A           63 KDDSCSFVGKTWTLYLKHVAECH   85 (85)
T ss_dssp             SCSSCCCEESSHHHHHHHHHHCC
T ss_pred             CCCCCCCccCCHHHHHHHHHhcC
Confidence            9   9999999999999999874

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.59  E-value=1e-15  Score=92.84  Aligned_cols=61  Identities=25%  Similarity=0.541  Sum_probs=56.4

Q ss_pred             ccccCCCceeecC--ccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCCccccccchhHhhhhcc
Q 040287           20 VDMTAAGRVFECK--TCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVCGLEFAIGQALGGHMRR   97 (162)
Q Consensus        20 ~~~h~~~k~~~C~--~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~   97 (162)
                      ..+|.++++|.|+  .|++.|.....|..|+++|.                   +++||.|++||+.|.+.+.|.+|+++
T Consensus        11 ~~~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~-------------------~~~~~~C~~C~~~f~~~~~l~~H~~~   71 (73)
T 1f2i_G           11 NYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHT-------------------GQKPFQCRICMRNFSRSDHLTTHIRT   71 (73)
T ss_dssp             SCCCCCCCCEECSSTTBCCEESSHHHHHHHHHHHH-------------------CCCCEECTTTCCEESCHHHHHHHHTT
T ss_pred             hccCCCCCccCCcCCCCCCccCCHHHHHHHHHhhC-------------------CCCCeECCCCCchhCCHHHHHHHHHh
Confidence            3568899999997  69999999999999999997                   78899999999999999999999999


Q ss_pred             cc
Q 040287           98 HR   99 (162)
Q Consensus        98 H~   99 (162)
                      |+
T Consensus        72 Ht   73 (73)
T 1f2i_G           72 HT   73 (73)
T ss_dssp             CC
T ss_pred             cC
Confidence            85

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.59  E-value=1.2e-15  Score=89.03  Aligned_cols=57  Identities=28%  Similarity=0.538  Sum_probs=52.3

Q ss_pred             ceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCCccccccchhHhhhh-ccccccc
Q 040287           27 RVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVCGLEFAIGQALGGHM-RRHRAVA  102 (162)
Q Consensus        27 k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~-~~H~~~~  102 (162)
                      +||.|++|++.|.....|..|+++|+                   +++||.|+.|++.|.+.+.|.+|+ ++|.++.
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~-------------------~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~   58 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHT-------------------NEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL   58 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTT-------------------SSCSEECTTTCCEESSHHHHHHHHTTTSCCSS
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhC-------------------CCCCccCCCCCCccCCHHHHHHHHHHHcCCcC
Confidence            58999999999999999999999987                   788999999999999999999997 6887653

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.58  E-value=1.3e-16  Score=98.24  Aligned_cols=64  Identities=19%  Similarity=0.351  Sum_probs=58.1

Q ss_pred             cchhhhhcCCCCCCcccccc-ccCCCceeecCc--cCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceec
Q 040287            2 ANCLMFMSQGGHFDAVNSVD-MTAAGRVFECKT--CNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHEC   78 (162)
Q Consensus         2 a~C~k~f~~~~~l~~~~h~~-~h~~~k~~~C~~--C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C   78 (162)
                      ..|++.|.+...|.  .|++ +|+++++|.|.+  |++.|.....|..|+++|+                   +++||.|
T Consensus        13 ~~C~~~f~~~~~L~--~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~-------------------~~~~~~C   71 (79)
T 2dlk_A           13 PGCGRIFSNRQYLN--HHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHS-------------------DTRDYIC   71 (79)
T ss_dssp             TTTCCEESSHHHHH--HHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHH-------------------TSCCCSC
T ss_pred             CCCcCccCCHHHHH--HHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhC-------------------CCCCeeC
Confidence            36999999988888  9998 799999999998  9999999999999999987                   7889999


Q ss_pred             CCCccccc
Q 040287           79 SVCGLEFA   86 (162)
Q Consensus        79 ~~C~k~F~   86 (162)
                      ++||++|.
T Consensus        72 ~~C~k~F~   79 (79)
T 2dlk_A           72 EFSGPSSG   79 (79)
T ss_dssp             CSSSCCCC
T ss_pred             CCCCCCCC
Confidence            99999984

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.57  E-value=7.3e-16  Score=102.62  Aligned_cols=82  Identities=22%  Similarity=0.369  Sum_probs=71.4

Q ss_pred             CCceeecC--ccCCccCChhHHHHHHHhcCCCCCCCCCC---------CCCcCccCCCCCCceecCC--CccccccchhH
Q 040287           25 AGRVFECK--TCNRQFPSFQALGGHRASHKKPRLTDGTG---------GGADTQQSPAKPRTHECSV--CGLEFAIGQAL   91 (162)
Q Consensus        25 ~~k~~~C~--~C~k~f~~~~~L~~H~~~h~~~~~~~~~~---------~l~~h~~~h~~~kp~~C~~--C~k~F~~~~~L   91 (162)
                      ++++|.|+  .|++.|.....|..|+++| ++++|.|..         .|..|+++|.++++|.|.+  |++.|.+...|
T Consensus         2 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h-~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l   80 (124)
T 1ubd_C            2 EPRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNL   80 (124)
T ss_dssp             ---CEECCSTTCCCEESSHHHHHHHHGGG-SCCCEECTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCEESCHHHH
T ss_pred             CCCcccCCCCCCcCccCCHHHHHHHHHHc-CCCCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCccCCHHHH
Confidence            46899999  8999999999999999999 788877432         4578999999999999986  99999999999


Q ss_pred             hhhhccccccccCCCC
Q 040287           92 GGHMRRHRAVALHGNE  107 (162)
Q Consensus        92 ~~H~~~H~~~~~~~~~  107 (162)
                      ..|+++|+++++..+.
T Consensus        81 ~~H~~~h~~~~~~~C~   96 (124)
T 1ubd_C           81 RTHVRIHTGDRPYVCP   96 (124)
T ss_dssp             HHHHHHHHCCCCCCCC
T ss_pred             HHHHHHhCCCCceECC
Confidence            9999999999998774

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.57  E-value=9e-16  Score=106.05  Aligned_cols=88  Identities=20%  Similarity=0.230  Sum_probs=75.4

Q ss_pred             cccCCCceeecCccCCccCChhHHHHHHHh-cCCCCC--------CCCC-C--------CCCcCccCCCCCCceecCC--
Q 040287           21 DMTAAGRVFECKTCNRQFPSFQALGGHRAS-HKKPRL--------TDGT-G--------GGADTQQSPAKPRTHECSV--   80 (162)
Q Consensus        21 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~-h~~~~~--------~~~~-~--------~l~~h~~~h~~~kp~~C~~--   80 (162)
                      .+...+.+|.|.+|++.|.....|..|++. |.+..+        +.|. |        .|..|+++|.++++|.|.+  
T Consensus        18 ~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~   97 (155)
T 2rpc_A           18 WIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPG   97 (155)
T ss_dssp             BCCTTCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSCTT
T ss_pred             eechhhcccccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCCCCcccCCcCC
Confidence            346677899999999999999999999997 776654        3432 1        3567999999999999998  


Q ss_pred             CccccccchhHhhhhccccccccCCCCc
Q 040287           81 CGLEFAIGQALGGHMRRHRAVALHGNEK  108 (162)
Q Consensus        81 C~k~F~~~~~L~~H~~~H~~~~~~~~~~  108 (162)
                      |++.|.+...|.+|+++|+++++..+..
T Consensus        98 C~~~f~~~~~L~~H~~~h~~~~~~~C~~  125 (155)
T 2rpc_A           98 CGKIFARSENLKIHKRTHTGEKPFKCEF  125 (155)
T ss_dssp             TCCEESCHHHHHHHHTTTCSSCSBCCSS
T ss_pred             CCCccCCHHHHHHHHHhhCCCCCccCCC
Confidence            9999999999999999999999988774

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.56  E-value=4.2e-15  Score=91.34  Aligned_cols=69  Identities=25%  Similarity=0.435  Sum_probs=62.3

Q ss_pred             cCCCceeecCc--cCCccCChhHHHHHHH-hcCCCCCCCCCCCCCcCccCCCCCCceecCC--CccccccchhHhhhhcc
Q 040287           23 TAAGRVFECKT--CNRQFPSFQALGGHRA-SHKKPRLTDGTGGGADTQQSPAKPRTHECSV--CGLEFAIGQALGGHMRR   97 (162)
Q Consensus        23 h~~~k~~~C~~--C~k~f~~~~~L~~H~~-~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~--C~k~F~~~~~L~~H~~~   97 (162)
                      .+++++|.|..  |++.|.....|..|++ .|.                   ++++|.|++  |++.|.+...|.+|+++
T Consensus         2 s~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~-------------------~~~~~~C~~~~C~k~f~~~~~L~~H~~~   62 (79)
T 2dlk_A            2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHI-------------------HQKSFSCPEPACGKSFNFKKHLKEHMKL   62 (79)
T ss_dssp             CSCCSSEECSSTTTCCEESSHHHHHHHHHHGGG-------------------SCCCEECSCTTTCCEESSHHHHHHHHHH
T ss_pred             CCCCCCccCCCCCCcCccCCHHHHHHHHHHHhC-------------------CCCCeECCCCCCcCccCCHHHHHHHHHH
Confidence            35788999987  9999999999999999 686                   788999999  99999999999999999


Q ss_pred             ccccccCCCCccc
Q 040287           98 HRAVALHGNEKVS  110 (162)
Q Consensus        98 H~~~~~~~~~~~~  110 (162)
                      |+++++..+..+.
T Consensus        63 H~~~~~~~C~~C~   75 (79)
T 2dlk_A           63 HSDTRDYICEFSG   75 (79)
T ss_dssp             HHTSCCCSCCSSS
T ss_pred             hCCCCCeeCCCCC
Confidence            9999998776654

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.56  E-value=3.9e-15  Score=97.22  Aligned_cols=55  Identities=20%  Similarity=0.352  Sum_probs=40.6

Q ss_pred             chhhhhcCCCCCCccccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCC
Q 040287            3 NCLMFMSQGGHFDAVNSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDG   59 (162)
Q Consensus         3 ~C~k~f~~~~~l~~~~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~   59 (162)
                      .|++.|.....|.  .|+++|.++++|.|.+|++.|.....|..|+++|+++++|.|
T Consensus        14 ~C~~~f~~~~~l~--~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C   68 (110)
T 2csh_A           14 QCGKSFTHKSQRD--RHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYEC   68 (110)
T ss_dssp             TTSCEESSHHHHH--HHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTTCCCCCEEC
T ss_pred             cCCCccCCHHHHH--HHHHHcCCCcCccCCCCCcccCCHHHHHHHHHHcCCCCCeeC
Confidence            3777777777776  777777777777777777777777777777777777777654

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.56  E-value=1.5e-16  Score=93.60  Aligned_cols=52  Identities=13%  Similarity=0.208  Sum_probs=48.7

Q ss_pred             cchhhhhcCCCCCCccccccccCCCceeecCccCCccCChhHHHHHHHhcCCCC
Q 040287            2 ANCLMFMSQGGHFDAVNSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPR   55 (162)
Q Consensus         2 a~C~k~f~~~~~l~~~~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~   55 (162)
                      .+||+.|.+.+.|.  .|+++|++++||.|.+||+.|....+|..|+++|+|++
T Consensus         8 ~~C~k~F~~~~~L~--~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C            8 NFCGKTYRDASGLS--RHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             TTTCCEESSHHHHH--HHHHHHHTCCCEECTTTCCEESSHHHHHHHGGGGSCC-
T ss_pred             CCCCCEeCCHHHHH--HHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCccCCCC
Confidence            37999999999999  99999999999999999999999999999999999764

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.56  E-value=2.2e-16  Score=95.51  Aligned_cols=70  Identities=17%  Similarity=0.267  Sum_probs=60.7

Q ss_pred             CCCCCCccccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCCccccccch
Q 040287           10 QGGHFDAVNSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVCGLEFAIGQ   89 (162)
Q Consensus        10 ~~~~l~~~~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C~k~F~~~~   89 (162)
                      +...|.  .|+++|+++++|.|++|++.|.....|..                          +++|.|+.||+.|.+.+
T Consensus         2 ~~~~l~--~H~~~h~~~~~~~C~~C~k~f~~~~~l~~--------------------------~~~~~C~~C~~~f~~~~   53 (73)
T 2ctu_A            2 SSGSSG--KRQKIHLGDRSQKCSKCGIIFIRRSTLSR--------------------------RKTPMCEKCRKDSCQEA   53 (73)
T ss_dssp             CCCSCC--CCCCCCCCCSEEECSSSCCEEECCCCCCC--------------------------SSSCCCHHHHHTCSCCC
T ss_pred             cchhHH--HHHHHhCCCCCeeCCcccchhCCHHHhCc--------------------------CCCCCCCCCChhhcCHH
Confidence            345666  99999999999999999999987665442                          56899999999999999


Q ss_pred             hHhhhhccccccccCCCC
Q 040287           90 ALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        90 ~L~~H~~~H~~~~~~~~~  107 (162)
                      .|.+|+++|+++++..+.
T Consensus        54 ~l~~H~~~H~~~~~~~C~   71 (73)
T 2ctu_A           54 ALNKDEGNESGKKTSGPS   71 (73)
T ss_dssp             SSCCCSSCCCCCCCSSCC
T ss_pred             HHHHHHHhhcCCCCCCCC
Confidence            999999999999887654

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.55  E-value=3.2e-16  Score=105.34  Aligned_cols=69  Identities=22%  Similarity=0.334  Sum_probs=59.5

Q ss_pred             CCCCCCccccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCCccccccch
Q 040287           10 QGGHFDAVNSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVCGLEFAIGQ   89 (162)
Q Consensus        10 ~~~~l~~~~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C~k~F~~~~   89 (162)
                      ....|.  .|+ .|++++||.|++|++.|.....|..|+++|                     ++||.|++||+.|.+.+
T Consensus        59 ~~~~l~--~h~-~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H---------------------~~~~~C~~C~k~f~~~~  114 (129)
T 2wbt_A           59 ESSYLY--RLL-ASKAISQFVCPLCLMPFSSSVSLKQHIRYT---------------------EHTKVCPVCKKEFTSTD  114 (129)
T ss_dssp             THHHHH--HHH-HHHHHCSEECTTTCCEESSHHHHHHHHHHT---------------------CCCCBCTTTCCBCSSHH
T ss_pred             CHHHHH--HHH-HhCCCCCeECCCCCcccCCHhHHHHHHHHC---------------------CCCCCCCCCCcccCCHH
Confidence            334444  555 688999999999999999999999999987                     24799999999999999


Q ss_pred             hHhhhhccccccc
Q 040287           90 ALGGHMRRHRAVA  102 (162)
Q Consensus        90 ~L~~H~~~H~~~~  102 (162)
                      .|.+|+++|++.-
T Consensus       115 ~l~~H~~~h~~~~  127 (129)
T 2wbt_A          115 SALDHVCKKHNIC  127 (129)
T ss_dssp             HHHHHHHHTTCCC
T ss_pred             HHHHHHHHHCCcc
Confidence            9999999998763

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.54  E-value=5.8e-15  Score=93.93  Aligned_cols=71  Identities=18%  Similarity=0.338  Sum_probs=64.4

Q ss_pred             ccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCCccccccchhHhhhhcccccc
Q 040287           22 MTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAV  101 (162)
Q Consensus        22 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~  101 (162)
                      .+.++++|.|.+|++.|.....|..|++.|.                   ++++|.|++|++.|.+...|.+|+++|.++
T Consensus         2 s~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------------~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   62 (96)
T 2dmd_A            2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRCHT-------------------GVKPYKCKTCDYAAADSSSLNKHLRIHSDE   62 (96)
T ss_dssp             CCCCCCCCCBTTTTBCCCCHHHHHHHGGGCC-------------------CCCSEECSSSCCEESSHHHHHHHHHHSCCC
T ss_pred             CCCCCcCeECCCCCCccCCHHHHHHHHHhcC-------------------CCCCEeCCCCCCccCCHHHHHHHHHHhCCC
Confidence            3567899999999999999999999999886                   778999999999999999999999999999


Q ss_pred             ccCCCCcccc
Q 040287          102 ALHGNEKVST  111 (162)
Q Consensus       102 ~~~~~~~~~~  111 (162)
                      ++..+..+..
T Consensus        63 ~~~~C~~C~~   72 (96)
T 2dmd_A           63 RPFKCQICPY   72 (96)
T ss_dssp             CCEECSSSSC
T ss_pred             CCccCCCCCC
Confidence            9887776554

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.54  E-value=2.3e-17  Score=104.01  Aligned_cols=75  Identities=16%  Similarity=0.272  Sum_probs=60.1

Q ss_pred             chhhhhcCCCCCCccccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCCc
Q 040287            3 NCLMFMSQGGHFDAVNSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVCG   82 (162)
Q Consensus         3 ~C~k~f~~~~~l~~~~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C~   82 (162)
                      .|++.|.....|.  .|+++|+++++|.|++|++.|.....|..|++.|+                    ..+|.|+.|+
T Consensus         8 ~C~k~f~~~~~L~--~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~--------------------~~~~~c~~C~   65 (88)
T 1llm_C            8 ICMRNFSRSDHLT--THIRTHTGEKPFACDICGRKFARSDERKRHRDIQH--------------------ILPILEDKVE   65 (88)
T ss_dssp             TTCCEESCHHHHH--HHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHT--------------------HHHHHHHHHH
T ss_pred             CCCCccCCHHHHH--HHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhC--------------------CCcchHHHHH
Confidence            5788888777777  88888888888888888888888888888888774                    3578888888


Q ss_pred             cccccchhHhhhhcccc
Q 040287           83 LEFAIGQALGGHMRRHR   99 (162)
Q Consensus        83 k~F~~~~~L~~H~~~H~   99 (162)
                      +.|.+...|..|++.+.
T Consensus        66 ~~f~~~~~L~~H~~~~h   82 (88)
T 1llm_C           66 ELLSKNYHLENEVARLK   82 (88)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhHHHHHHHH
Confidence            88888888888887644

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.53  E-value=7.4e-15  Score=87.56  Aligned_cols=60  Identities=23%  Similarity=0.521  Sum_probs=55.0

Q ss_pred             cCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecC-CCccccccchhHhhhhcccccc
Q 040287           23 TAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECS-VCGLEFAIGQALGGHMRRHRAV  101 (162)
Q Consensus        23 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~-~C~k~F~~~~~L~~H~~~H~~~  101 (162)
                      ..++++|.|..|++.|. ...|..|+++ +                   +++||.|+ .||++|...+.|..|+++|...
T Consensus         5 ~C~~~~~~C~~C~k~f~-~~~L~~H~~~-~-------------------~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~~   63 (66)
T 2eod_A            5 SSGKRTQPCTYCTKEFV-FDTIQSHQYQ-C-------------------PRLPVACPNQCGVGTVAREDLPGHLKDSCNT   63 (66)
T ss_dssp             CCCCCEEECSSSCCEEE-HHHHHHHHHH-C-------------------SSSEEECTTCCSCCEEETTTHHHHHHTTSSS
T ss_pred             cCCCCCeeccccCCccC-HHHHHHHHHH-c-------------------CCcCccCCcccCcccccHHHHHHHHHhhccc
Confidence            45789999999999999 9999999998 6                   78899999 9999999999999999999766


Q ss_pred             cc
Q 040287          102 AL  103 (162)
Q Consensus       102 ~~  103 (162)
                      ++
T Consensus        64 ~~   65 (66)
T 2eod_A           64 AL   65 (66)
T ss_dssp             CC
T ss_pred             Cc
Confidence            54

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.53  E-value=1.5e-14  Score=91.88  Aligned_cols=70  Identities=23%  Similarity=0.460  Sum_probs=62.6

Q ss_pred             cCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCCccccccchhHhhhhcccccc-
Q 040287           23 TAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAV-  101 (162)
Q Consensus        23 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~-  101 (162)
                      .+++++|.|.+|++.|.....|..|+++|.                   ++++|.|++|++.|.+...|.+|+++|+++ 
T Consensus         2 s~~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------------~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~   62 (95)
T 2yt9_A            2 SSGSSGVACEICGKIFRDVYHLNRHKLSHS-------------------GEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV   62 (95)
T ss_dssp             CCCCSCEECSSSCCEESSSHHHHHHHHHSC-------------------SSCSEECSSSCCEESCHHHHHHHHHHHCCCC
T ss_pred             CCCCCCeECCCCCCccCChHHHHHHHHhcC-------------------CCCCCcCCCCCCccCCHHHHHHHHHHhcCCC
Confidence            357899999999999999999999999997                   778999999999999999999999999987 


Q ss_pred             -ccCCCCcccc
Q 040287          102 -ALHGNEKVST  111 (162)
Q Consensus       102 -~~~~~~~~~~  111 (162)
                       ++..+..+..
T Consensus        63 ~~~~~C~~C~~   73 (95)
T 2yt9_A           63 GKPYICQSCGK   73 (95)
T ss_dssp             CSSBCCSSSCC
T ss_pred             CCceECCCccc
Confidence             7777666543

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.52  E-value=2.3e-14  Score=92.80  Aligned_cols=47  Identities=15%  Similarity=0.228  Sum_probs=29.1

Q ss_pred             CcCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCCccc
Q 040287           64 ADTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNEKVS  110 (162)
Q Consensus        64 ~~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~  110 (162)
                      ..|+++|.++++|.|.+|++.|.+...|.+|+++|+++++..+..+.
T Consensus        34 ~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~   80 (106)
T 2ee8_A           34 LIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECG   80 (106)
T ss_dssp             HHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSC
T ss_pred             HHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcC
Confidence            45566666666666666666666666666666666666665555443

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.48  E-value=1.6e-14  Score=90.82  Aligned_cols=56  Identities=25%  Similarity=0.544  Sum_probs=53.0

Q ss_pred             CceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCCccccccchhHhhhhccccc
Q 040287           26 GRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRA  100 (162)
Q Consensus        26 ~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~  100 (162)
                      ++||.|.+|++.|.....|..|+++|+                   +++||.|+.|+++|.+.+.|.+|+++|++
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H~-------------------~~~~~~C~~C~k~f~~~~~L~~H~~~h~~   56 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTHT-------------------GEKPFACDICGRKFARSDERKRHRDIQHI   56 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHH-------------------CCCCEECTTTCCEESSHHHHHHHHHHHTH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHcC-------------------CCCCccCCCCCCccCCHHHHHHHHHHhCC
Confidence            589999999999999999999999997                   78899999999999999999999999874

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.48  E-value=6.6e-14  Score=84.57  Aligned_cols=62  Identities=24%  Similarity=0.425  Sum_probs=55.7

Q ss_pred             ccccccCCCceeecCc--cCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCC--CccccccchhHhh
Q 040287           18 NSVDMTAAGRVFECKT--CNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSV--CGLEFAIGQALGG   93 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~--C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~--C~k~F~~~~~L~~   93 (162)
                      .....++..++|.|..  |++.|.....|..|+++|+                   +++||.|.+  |++.|.+...|.+
T Consensus         7 ~~~~~~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~-------------------~~~~~~C~~~~C~k~f~~~~~l~~   67 (72)
T 2epa_A            7 GPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHT-------------------GEKPFSCSWKGCERRFARSDELSR   67 (72)
T ss_dssp             CCCCCCCCCCCEECSSTTTCCEESSHHHHHHHHHHHS-------------------SSCSEECCCTTCCCEESSHHHHHH
T ss_pred             CCCCCccccCceeCCCCCCccccCCHHHHHHHHHhcC-------------------CCCCccCCCCCCCcccCCHHHHHh
Confidence            3445677889999998  9999999999999999997                   788999975  9999999999999


Q ss_pred             hhccc
Q 040287           94 HMRRH   98 (162)
Q Consensus        94 H~~~H   98 (162)
                      |+++|
T Consensus        68 H~~~H   72 (72)
T 2epa_A           68 HRRTH   72 (72)
T ss_dssp             HTTTC
T ss_pred             HhhcC
Confidence            99887

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.48  E-value=3.2e-14  Score=78.50  Aligned_cols=45  Identities=20%  Similarity=0.355  Sum_probs=41.9

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVC   81 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C   81 (162)
                      .|+++|+++++|.|++|++.|.....|..|+++|+                   +++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------------~~~~~~C~~C   46 (46)
T 2eq4_A            2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHS-------------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCC-------------------SSSCCCCCCC
T ss_pred             CCcccCCCCCCeECCCCCCccCchHHHHHHHHhcC-------------------CCCCCCCCCC
Confidence            68999999999999999999999999999999997                   6778888877

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.48  E-value=2.8e-14  Score=78.83  Aligned_cols=45  Identities=18%  Similarity=0.315  Sum_probs=41.8

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVC   81 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C   81 (162)
                      .|+++|+++++|.|++|++.|.....|..|+++|+                   +++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------------~~k~~~C~~C   46 (46)
T 2ene_A            2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHT-------------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCSSSEECSSSCCEESSHHHHHHHHTTTC-------------------CCCCCSCCCC
T ss_pred             CcccCCCCCCCeECCCCCchhCChHHHHHHHhhcC-------------------CCCCCCCCCC
Confidence            78999999999999999999999999999999987                   6778888877

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.48  E-value=1.8e-14  Score=90.50  Aligned_cols=68  Identities=22%  Similarity=0.487  Sum_probs=60.4

Q ss_pred             CCceeecC--ccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCCccccccchhHhhhhccccccc
Q 040287           25 AGRVFECK--TCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVA  102 (162)
Q Consensus        25 ~~k~~~C~--~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~  102 (162)
                      ++++|.|.  .|++.|.....|..|+++|.                   ++++|.|+.|++.|.+...|..|+++|++++
T Consensus         1 ~~k~~~C~~~~C~~~f~~~~~l~~H~~~h~-------------------~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~   61 (90)
T 1a1h_A            1 MERPYACPVESCDRRFSQSGSLTRHIRIHT-------------------GQKPFQCRICMRNFSRSDHLTTHIRTHTGEK   61 (90)
T ss_dssp             --CCEECCSSSCCCEESSHHHHHHHHHHHH-------------------CCCCEECTTTCCEESCHHHHHHHHHHHHCCC
T ss_pred             CCCceECCCCCCCCccCCHHHHHHHHHHhC-------------------CCCCccCCCCCcccCCHHHHHHHHHHcCCCC
Confidence            47899998  69999999999999999997                   6789999999999999999999999999999


Q ss_pred             cCCCCcccc
Q 040287          103 LHGNEKVST  111 (162)
Q Consensus       103 ~~~~~~~~~  111 (162)
                      +..+..+..
T Consensus        62 ~~~C~~C~~   70 (90)
T 1a1h_A           62 PFACDICGR   70 (90)
T ss_dssp             CEECTTTCC
T ss_pred             CccCCCCCc
Confidence            877766544

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.48  E-value=3.5e-14  Score=78.40  Aligned_cols=45  Identities=22%  Similarity=0.372  Sum_probs=41.9

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVC   81 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C   81 (162)
                      +|+++|+++++|.|++|++.|.....|..|+++|+                   +++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------------~~~~~~C~~C   46 (46)
T 2eml_A            2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHS-------------------GKKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHGGGS-------------------SCCCSCSSCC
T ss_pred             CccCCcCCCCCeeCCCcCCccCCHHHHHHHHHHhc-------------------CCCCCCCCCC
Confidence            68999999999999999999999999999999997                   6778888877

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=3.4e-14  Score=78.43  Aligned_cols=45  Identities=20%  Similarity=0.268  Sum_probs=41.9

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVC   81 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C   81 (162)
                      +|+++|+++++|.|++|++.|.....|..|+++|+                   +++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------------~~k~~~C~~C   46 (46)
T 2emm_A            2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHT-------------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESSHHHHHHHHHHHS-------------------CCCTTSSSCC
T ss_pred             CCcCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhC-------------------CCCCCCCCCC
Confidence            78999999999999999999999999999999997                   6778888877

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.47  E-value=3.8e-14  Score=78.22  Aligned_cols=45  Identities=20%  Similarity=0.259  Sum_probs=41.7

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVC   81 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C   81 (162)
                      .|+++|+++++|.|++|++.|.....|..|+++|+                   +++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------------~~k~~~C~~C   46 (46)
T 2el4_A            2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHT-------------------GVKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSSCEESSHHHHHHHGGGSS-------------------SCCCSCCTTC
T ss_pred             ccccCCCCCCceECCCCCchhCCHHHHHHHHHHhC-------------------CCCCCCCCCC
Confidence            68999999999999999999999999999999997                   6778888876

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=4.2e-14  Score=78.10  Aligned_cols=45  Identities=22%  Similarity=0.373  Sum_probs=42.0

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVC   81 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C   81 (162)
                      +|+++|+++++|.|++|++.|.....|..|+++|+                   +++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------------~~~~~~C~~C   46 (46)
T 2ytd_A            2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHT-------------------GYRPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSHHHHHHHHHHHT-------------------CCCSSCSSCC
T ss_pred             CCccccCCCcCeECCCCCCeeCChHHHHHHHHHcC-------------------CCCCCCCCCC
Confidence            78999999999999999999999999999999997                   6778888877

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=3.5e-14  Score=78.41  Aligned_cols=45  Identities=20%  Similarity=0.366  Sum_probs=41.7

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVC   81 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C   81 (162)
                      .|+++|+++++|.|++|++.|.....|..|+++|+                   +++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------------~~k~~~C~~C   46 (46)
T 2ytn_A            2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHT-------------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTS-------------------CCCCCSCCCC
T ss_pred             CCCcCCCCCcCeECCCCCCeeCCHHHHHHHhhhcC-------------------CCCCCCCCCC
Confidence            68999999999999999999999999999999997                   6778888876

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.47  E-value=3.6e-14  Score=78.42  Aligned_cols=45  Identities=22%  Similarity=0.358  Sum_probs=41.8

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVC   81 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C   81 (162)
                      +|+++|+++++|.|++|++.|.....|..|+++|+                   +++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------------~~k~~~C~~C   46 (46)
T 2emk_A            2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHT-------------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHS-------------------SCCCSSCCCC
T ss_pred             CCCCccCCCCceECCCCCchhCCHHHHHHHHHHcC-------------------CCCCCCCCCC
Confidence            78999999999999999999999999999999997                   6778888876

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=3.7e-14  Score=78.38  Aligned_cols=45  Identities=24%  Similarity=0.414  Sum_probs=41.5

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVC   81 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C   81 (162)
                      .|+++|+++++|.|++|++.|.....|..|+++|+                   +++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------------~~k~~~C~~c   46 (46)
T 2emf_A            2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHT-------------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSSSCCEECSSSCCEESCHHHHHHHGGGTS-------------------CSSCSCCCCC
T ss_pred             ccccccCCCCCeECCCCCchhCCHHHHHHHHHHhC-------------------CCCCCCCCCC
Confidence            68999999999999999999999999999999997                   6778888876

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.47  E-value=3.5e-14  Score=78.45  Aligned_cols=45  Identities=22%  Similarity=0.333  Sum_probs=41.9

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVC   81 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C   81 (162)
                      .|+++|+++++|.|++|++.|.....|.+|+++|+                   +++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------------~~k~~~C~~C   46 (46)
T 2ely_A            2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHT-------------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHS-------------------CCSSCSCCCC
T ss_pred             CCCCCCCCCCCcccCccCcccCCHHHHHHHHHHcC-------------------CCCCCCCCCC
Confidence            68999999999999999999999999999999997                   6778888877

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.47  E-value=3.5e-14  Score=78.42  Aligned_cols=45  Identities=18%  Similarity=0.298  Sum_probs=41.8

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVC   81 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C   81 (162)
                      +|+++|+++++|.|++|++.|.....|..|+++|+                   +++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------------~~~~~~C~~C   46 (46)
T 2em0_A            2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHV-------------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGS-------------------SSSCSCSSCC
T ss_pred             CCcCccCCCcCeECCCCCcccCCHHHHHHHHHHcC-------------------CCCCcCCCCC
Confidence            68999999999999999999999999999999997                   6778888876

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=3.9e-14  Score=78.23  Aligned_cols=45  Identities=18%  Similarity=0.320  Sum_probs=41.7

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVC   81 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C   81 (162)
                      .|+++|+++++|.|++|++.|.....|..|+++|+                   +++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------------~~k~~~C~~c   46 (46)
T 2eq0_A            2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHT-------------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCTTCCCCEECTTTCCEESSHHHHHHHHTTTC-------------------CCCCSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCchhCCHHHHHHHHHHcC-------------------CCCCCCCCCC
Confidence            68999999999999999999999999999999987                   6778888877

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=4.6e-14  Score=77.94  Aligned_cols=45  Identities=20%  Similarity=0.332  Sum_probs=41.7

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVC   81 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C   81 (162)
                      .|+++|+++++|.|++|++.|.....|..|+++|+                   +++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------------~~k~~~C~~c   46 (46)
T 2ep2_A            2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHT-------------------GEKPSGPSSG   46 (46)
T ss_dssp             CSSSCSSCCCSEECSSSCCEESSHHHHHHHHHTTS-------------------SCCSCCSCCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCCHHHHHHHHHHhC-------------------CCCCCCCCCC
Confidence            68999999999999999999999999999999997                   6778888876

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=4.4e-14  Score=77.99  Aligned_cols=45  Identities=20%  Similarity=0.294  Sum_probs=41.5

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVC   81 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C   81 (162)
                      +|+++|+++++|.|++|++.|.....|..|+++|+                   +++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------------~~k~~~C~~c   46 (46)
T 2ytj_A            2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHT-------------------KQKPSGPSSG   46 (46)
T ss_dssp             CSSCTTSSCCSEECSSSCCEESSHHHHHHHHHHTS-------------------CCCCSSCSCC
T ss_pred             CcccCCCCCcCeECCCCChhhCCHHHHHHHHHHcC-------------------CCCCCCCCCC
Confidence            78999999999999999999999999999999997                   6778888776

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.47  E-value=4.1e-14  Score=78.11  Aligned_cols=45  Identities=18%  Similarity=0.299  Sum_probs=41.7

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVC   81 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C   81 (162)
                      .|+++|+++++|.|++|++.|.....|..|+++|+                   +++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------------~~k~~~C~~C   46 (46)
T 2em7_A            2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHT-------------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSCCCSEECSSSCCEESCHHHHHHHGGGGT-------------------TCCCSSTTCC
T ss_pred             CCCCCCCCCcCccCCCccchhCCHHHHHHHHHHhC-------------------CCCCCCCCCC
Confidence            68999999999999999999999999999999997                   6778888877

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=4.3e-14  Score=78.04  Aligned_cols=45  Identities=20%  Similarity=0.327  Sum_probs=41.8

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVC   81 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C   81 (162)
                      .|+++|+++++|.|++|++.|.....|..|+++|+                   +++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------------~~k~~~C~~C   46 (46)
T 2emy_A            2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHA-------------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSSCCEECSSSCCEESSHHHHHHHHHHHT-------------------TSCCSCSSCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCcHHHHHHHHHHcC-------------------CCCCCCCCCC
Confidence            68999999999999999999999999999999997                   6778888876

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.47  E-value=4.1e-14  Score=77.39  Aligned_cols=44  Identities=20%  Similarity=0.345  Sum_probs=40.7

Q ss_pred             cccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCC
Q 040287           19 SVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVC   81 (162)
Q Consensus        19 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C   81 (162)
                      |+++|+++++|.|++|++.|.....|..|+++|+                   +++||.|++|
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------------~~~~~~C~~C   44 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHA-------------------EEKPSGPSSG   44 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEESSHHHHHHHHHHHT-------------------SSCSCSCCCC
T ss_pred             CCCCcCCCcCccCCCCCcccCCHHHHHHHHHHhC-------------------CCCCCCCCCC
Confidence            7889999999999999999999999999999997                   6778888876

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=3.7e-14  Score=78.31  Aligned_cols=45  Identities=22%  Similarity=0.394  Sum_probs=41.7

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVC   81 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C   81 (162)
                      .|+++|+++++|.|++|++.|.....|..|+++|+                   +++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------------~~k~~~C~~C   46 (46)
T 2epz_A            2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHT-------------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTT-------------------TCCCCSSCCC
T ss_pred             CCCCCcCCCCCeECCCCCceeCCHHHHHHHHHHhC-------------------CCCCCCCCCC
Confidence            68999999999999999999999999999999987                   6778888876

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.47  E-value=4.2e-14  Score=78.04  Aligned_cols=45  Identities=20%  Similarity=0.280  Sum_probs=41.7

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVC   81 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C   81 (162)
                      +|+++|+++++|.|++|++.|.....|..|+++|+                   +++||.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------------~~k~~~C~~C   46 (46)
T 2en8_A            2 SSGSSGSGEKSHTCDECGKNFCYISALRIHQRVHM-------------------GEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECTTTCCEESSHHHHHHHHTTTC-------------------CSCSSCCSCC
T ss_pred             CccccCCCCCCeECCCcCcccCCHHHHHHHHHHhC-------------------CCCCCCCCCC
Confidence            78999999999999999999999999999999987                   6778888876

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.47  E-value=3.9e-14  Score=78.23  Aligned_cols=45  Identities=18%  Similarity=0.339  Sum_probs=41.7

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVC   81 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C   81 (162)
                      +|+++|+++++|.|++|++.|.....|..|+++|+                   +++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------------~~k~~~C~~c   46 (46)
T 2ema_A            2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHT-------------------GEKPSGPSSG   46 (46)
T ss_dssp             CSCSSCTTSCCEECSSSCCEESSHHHHHHHHTGGG-------------------CCCCCSSSCC
T ss_pred             CCccCCCCCcCcCCCCCcchhCCHHHHHHHHHhcC-------------------CCCCCCCCCC
Confidence            68999999999999999999999999999999997                   6778888876

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=4.3e-14  Score=78.08  Aligned_cols=45  Identities=22%  Similarity=0.282  Sum_probs=41.7

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVC   81 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C   81 (162)
                      .|+++|+++++|.|++|++.|.....|.+|+++|+                   +++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------------~~k~~~C~~C   46 (46)
T 2ytq_A            2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHS-------------------GEKPSGPSSG   46 (46)
T ss_dssp             CCSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTC-------------------CSCSSCCCCC
T ss_pred             CCCcCcCCCCCcCCCccChhhCChHHHHHHHHHhC-------------------CCCCCCCCCC
Confidence            68999999999999999999999999999999987                   6778888877

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=4.7e-14  Score=77.83  Aligned_cols=45  Identities=20%  Similarity=0.309  Sum_probs=41.9

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVC   81 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C   81 (162)
                      +|+++|+++++|.|++|++.|.....|..|+++|+                   +++||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------------~~~~~~C~~C   46 (46)
T 2eov_A            2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHT-------------------GERHSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHS-------------------CCSSCCSCCC
T ss_pred             CCCCCCCCCCCccCCccChhhCCHHHHHHHHHhcC-------------------CCCCCCCCCC
Confidence            68999999999999999999999999999999997                   6778888877

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.46  E-value=1.8e-14  Score=85.00  Aligned_cols=55  Identities=16%  Similarity=0.319  Sum_probs=48.9

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCCccccccchhHhhh
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVCGLEFAIGQALGGH   94 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H   94 (162)
                      .|+++|++++||.|++|++.|.....|.   ++|+                   +++||.|++||+.|....++..+
T Consensus         4 ~h~~~H~~~k~~~C~~C~k~F~~~~~l~---~~H~-------------------~~k~~~C~~C~k~f~~~~~~~~~   58 (62)
T 1vd4_A            4 TDERDSTNRASFKCPVCSSTFTDLEANQ---LFDP-------------------MTGTFRCTFCHTEVEEDESAMPK   58 (62)
T ss_dssp             CCSSSCCSSSEEECSSSCCEEEHHHHHH---HEET-------------------TTTEEBCSSSCCBCEECTTCSCC
T ss_pred             hHHHHcCCCCCccCCCCCchhccHHHhH---hhcC-------------------CCCCEECCCCCCccccCcccccc
Confidence            8999999999999999999999888776   6675                   88999999999999988876544

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.46  E-value=2.8e-14  Score=88.00  Aligned_cols=65  Identities=25%  Similarity=0.465  Sum_probs=59.4

Q ss_pred             eeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCC
Q 040287           28 VFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        28 ~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      ||.|.+|++.|.....|..|++.|.                   ++++|.|+.|++.|.+...|.+|+++|+++++..+.
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~-------------------~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   61 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHS-------------------DTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ   61 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHH-------------------TCCCEECSSSCCEESSHHHHHHHHHHHHTCCCEECT
T ss_pred             CccCCCCcccccCchhHHHHHHHcC-------------------CCCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCC
Confidence            6899999999999999999999997                   678999999999999999999999999999887776


Q ss_pred             cccc
Q 040287          108 KVST  111 (162)
Q Consensus       108 ~~~~  111 (162)
                      .+..
T Consensus        62 ~C~~   65 (82)
T 2kmk_A           62 VCGK   65 (82)
T ss_dssp             TTSC
T ss_pred             Ccch
Confidence            6543

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=4.8e-14  Score=77.85  Aligned_cols=45  Identities=20%  Similarity=0.332  Sum_probs=41.7

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVC   81 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C   81 (162)
                      .|+++|+++++|.|++|++.|.....|..|+++|+                   +++||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------------~~k~~~C~~C   46 (46)
T 2eoq_A            2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHT-------------------AEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTT-------------------CCCSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCcCCchhCCHHHHHHHHHHcC-------------------CCCCCCCCCC
Confidence            68999999999999999999999999999999997                   6778888876

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=4.2e-14  Score=78.13  Aligned_cols=45  Identities=18%  Similarity=0.301  Sum_probs=41.8

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVC   81 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C   81 (162)
                      .|+++|+++++|.|++|++.|.....|..|+++|+                   +++||.|++|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------------~~~~~~C~~C   46 (46)
T 2elz_A            2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHM-------------------GEKTSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGG-------------------SCCCCCSCCC
T ss_pred             CCCCCCCCCCCeeCcccCchhCCHHHHHHHHHhcC-------------------CCCCCCCCCC
Confidence            68999999999999999999999999999999997                   6778888877

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=3.4e-14  Score=78.51  Aligned_cols=45  Identities=20%  Similarity=0.327  Sum_probs=41.8

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVC   81 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C   81 (162)
                      +|+++|+++++|.|++|++.|.....|..|+++|+                   +++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------------~~k~~~C~~C   46 (46)
T 2eoo_A            2 SSGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHF-------------------REKSSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHH-------------------STTSSCCSCC
T ss_pred             CCCCCCCCCCCEEccccCcccCCHHHHHHHHHHHc-------------------CCCCCCCCCC
Confidence            78999999999999999999999999999999997                   6778888876

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=4.4e-14  Score=78.00  Aligned_cols=45  Identities=18%  Similarity=0.316  Sum_probs=41.8

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVC   81 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C   81 (162)
                      +|+++|+++++|.|++|++.|.....|..|+++|+                   +++||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------------~~~~~~C~~c   46 (46)
T 2ytk_A            2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHT-------------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSEECSSSCCEESSHHHHHHHHHHHS-------------------SSSCSSCCCC
T ss_pred             CCcccCCCCCCEeCCcCCCccCCHHHHHHHHHHHC-------------------CCCCCCCCCC
Confidence            68999999999999999999999999999999997                   6778888876

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=4.4e-14  Score=77.96  Aligned_cols=45  Identities=20%  Similarity=0.255  Sum_probs=41.6

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVC   81 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C   81 (162)
                      +|+++|+++++|.|++|++.|.....|..|+++|+                   +++||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------------~~k~~~C~~C   46 (46)
T 2eop_A            2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHT-------------------GENPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTT-------------------TSCCSCCCCC
T ss_pred             CCccccCCCCCeeCCCCCchhCCHHHHHHHHHHcC-------------------CCCCCCCCCC
Confidence            68999999999999999999999999999999987                   6778888876

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.46  E-value=4.2e-14  Score=78.13  Aligned_cols=45  Identities=20%  Similarity=0.311  Sum_probs=41.7

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVC   81 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C   81 (162)
                      +|+++|+++++|.|++|++.|.....|..|+++|+                   +++||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------------~~~~~~C~~C   46 (46)
T 2em5_A            2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHT-------------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSCSEECSSSCCEESSHHHHHHHHTTTS-------------------CSCCSSCCCC
T ss_pred             CCcCCCCCCCCeECCcCCCccCCHHHHHHHHHHhC-------------------CCCCCCCCCC
Confidence            78999999999999999999999999999999987                   6778888877

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=5.2e-14  Score=77.66  Aligned_cols=45  Identities=18%  Similarity=0.214  Sum_probs=41.7

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVC   81 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C   81 (162)
                      .|+++|+++++|.|++|++.|.....|..|+++|+                   +++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------------~~k~~~C~~C   46 (46)
T 2epw_A            2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHV-------------------DDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSSHHHHHHHHHCC-------------------SCCCSCCCCC
T ss_pred             cCcccCCCCCCeeCCCCCCccCCHHHHHHHHHHhC-------------------CCCCCCCCCC
Confidence            68999999999999999999999999999999997                   6778888876

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=3.3e-14  Score=78.50  Aligned_cols=45  Identities=20%  Similarity=0.296  Sum_probs=41.7

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVC   81 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C   81 (162)
                      +|+++|+++++|.|++|++.|.....|..|+++|+                   +++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------------~~k~~~C~~c   46 (46)
T 2emh_A            2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHT-------------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCSCCCSEECTTTCCEESSHHHHHHHHHHHH-------------------CSSCSSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCchhCCHHHHHHHHHhcC-------------------CCCCCCCCCC
Confidence            68999999999999999999999999999999997                   6778888876

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.46  E-value=6e-14  Score=77.45  Aligned_cols=45  Identities=20%  Similarity=0.317  Sum_probs=41.8

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVC   81 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C   81 (162)
                      .|+++|+++++|.|++|++.|.....|..|+++|+                   +++||.|++|
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------------~~~~~~C~~C   46 (46)
T 2enc_A            2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHS-------------------GEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSEECSSSCCEESSHHHHHHHHHHSC-------------------CSSCCSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCCcCCChHHHHHHHHHhC-------------------CCCCCCCCCC
Confidence            68999999999999999999999999999999997                   6778888877

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=3.6e-14  Score=78.37  Aligned_cols=45  Identities=18%  Similarity=0.364  Sum_probs=41.8

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVC   81 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C   81 (162)
                      +|+++|+++++|.|++|++.|.....|..|+++|+                   +++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------------~~k~~~C~~C   46 (46)
T 2emp_A            2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHT-------------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESCHHHHHHHHHHHH-------------------CCSCCSCCCC
T ss_pred             CcccccCCCcCeECCCCCchhCCHHHHHHHHHHcC-------------------CCCCCCCCCC
Confidence            68999999999999999999999999999999997                   6778888876

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.46  E-value=5.5e-14  Score=77.56  Aligned_cols=45  Identities=20%  Similarity=0.315  Sum_probs=41.8

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVC   81 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C   81 (162)
                      .|+++|+++++|.|++|++.|.....|..|+++|+                   +++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------------~~~~~~C~~C   46 (46)
T 2em9_A            2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHS-------------------GEKPSGPSSG   46 (46)
T ss_dssp             CSCCSCCCCCSEECSSSCCEESSHHHHHHHGGGGT-------------------SCCCCSTTCC
T ss_pred             CCCCCCCCCcCeECCccccccCChHHHHHHHHHhC-------------------CCCCCCCCCC
Confidence            68999999999999999999999999999999997                   6778888877

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=5.7e-14  Score=77.48  Aligned_cols=45  Identities=18%  Similarity=0.259  Sum_probs=41.9

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVC   81 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C   81 (162)
                      .|+++|+++++|.|++|++.|.....|..|+++|+                   +++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------------~~~~~~C~~C   46 (46)
T 2eme_A            2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHT-------------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCSEECSSSCCEESSHHHHHHHHGGGC-------------------CCSCCSSCCC
T ss_pred             CCCCCCCCCCCeECCCCChhhCCHHHHHHHHHhcC-------------------CCCCCCCCCC
Confidence            68999999999999999999999999999999997                   6778888877

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=4e-14  Score=78.12  Aligned_cols=45  Identities=18%  Similarity=0.337  Sum_probs=41.8

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVC   81 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C   81 (162)
                      .|+++|+++++|.|++|++.|.....|..|+++|+                   +++||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~-------------------~~~~~~C~~C   46 (46)
T 2eoe_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHT-------------------GVKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSSEETTTTEECSSHHHHHHHHGGGS-------------------CCCSCSSCCC
T ss_pred             CCCCCCCCCCCeECCCcChhhCCHHHHHHHHHHcC-------------------CCCCCCCCCC
Confidence            68999999999999999999999999999999997                   6778888877

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.46  E-value=6.3e-14  Score=77.40  Aligned_cols=45  Identities=20%  Similarity=0.293  Sum_probs=41.7

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVC   81 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C   81 (162)
                      .|+++|+++++|.|++|++.|.....|..|+++|+                   +++||.|++|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------------~~~~~~C~~C   46 (46)
T 2el6_A            2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHT-------------------REKPSGPSSG   46 (46)
T ss_dssp             CSCCSSCCCCSEECSSSSCEESSHHHHHHHHGGGC-------------------CSSCCSCCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcC-------------------CCCCCCCCCC
Confidence            68999999999999999999999999999999997                   6778888876

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.45  E-value=7e-14  Score=77.19  Aligned_cols=45  Identities=18%  Similarity=0.292  Sum_probs=41.7

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVC   81 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C   81 (162)
                      .|+++|+++++|.|++|++.|.....|..|+++|+                   +++||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------------~~k~~~C~~C   46 (46)
T 2yso_A            2 SSGSSGSREKSHQCRECGEIFFQYVSLIEHQVLHM-------------------GQKNSGPSSG   46 (46)
T ss_dssp             CCSCCSSCCCCEECTTTCCEESSHHHHHHHHHHHS-------------------CCSCCCTTCC
T ss_pred             CcccccCCCCCEEccccChhhCCHHHHHHHHHHhC-------------------CCCCCCCCCC
Confidence            68999999999999999999999999999999997                   6778888877

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=4.9e-14  Score=77.82  Aligned_cols=45  Identities=18%  Similarity=0.372  Sum_probs=41.8

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVC   81 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C   81 (162)
                      .|+++|+++++|.|++|++.|.....|..|+++|+                   +++||.|++|
T Consensus         2 ~h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------------~~k~~~C~~C   46 (46)
T 2en6_A            2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHT-------------------GEKPSGPSSG   46 (46)
T ss_dssp             CCSCCCCSSCCEEETTTTEEESSHHHHHHHHHHHS-------------------SCCCSSSCCC
T ss_pred             CCCCccCCCcCeECCCCCcccCchHHHHHHHHHcC-------------------CCCCCCCCCC
Confidence            68999999999999999999999999999999997                   6778888877

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=4.9e-14  Score=77.75  Aligned_cols=45  Identities=18%  Similarity=0.358  Sum_probs=41.7

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVC   81 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C   81 (162)
                      .|+++|+++++|.|++|++.|.....|..|+++|+                   +++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------------~~~~~~C~~C   46 (46)
T 2ytr_A            2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHT-------------------GEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTT-------------------TCSCCCSCCC
T ss_pred             CCCcCCCCCcCcCCCCCCCccCCHHHHHHHHHhcC-------------------CCCCCCCCCC
Confidence            68999999999999999999999999999999987                   6778888877

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=6.8e-14  Score=77.23  Aligned_cols=45  Identities=18%  Similarity=0.295  Sum_probs=40.8

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVC   81 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C   81 (162)
                      +|+++|+++++|.|++|++.|.....|..|+++|+                   +++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------------~~~~~~C~~~   46 (46)
T 2ep3_A            2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHT-------------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSCCCSEECSSSCCEESSHHHHHHHHTTTT-------------------TSCCCCTTCC
T ss_pred             CCCCCCCCCCCeECCCCCchhCCHHHHHHHHHHcC-------------------CCCCCCCCCC
Confidence            68999999999999999999999999999999987                   6677888764

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=5.1e-14  Score=77.75  Aligned_cols=45  Identities=20%  Similarity=0.320  Sum_probs=41.7

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVC   81 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C   81 (162)
                      .|+++|+++++|.|++|++.|.....|..|+++|+                   +++||.|++|
T Consensus         2 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------------~~~~~~C~~C   46 (46)
T 2ysp_A            2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHT-------------------GERPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEEETTTTEEESCHHHHHHHHTTSC-------------------SCCSSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCCccCCHHHHHHHHHhhC-------------------CCCCCCCCCC
Confidence            68999999999999999999999999999999987                   6778888877

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.44  E-value=5.9e-14  Score=77.47  Aligned_cols=45  Identities=20%  Similarity=0.386  Sum_probs=41.7

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVC   81 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C   81 (162)
                      .|+++|+++++|.|++|++.|.....|..|+++|+                   +++||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------------~~~~~~C~~C   46 (46)
T 2en1_A            2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHT-------------------GEKPSGPSSG   46 (46)
T ss_dssp             CSTTCCCCCCSEEETTTTEEESSHHHHHHHGGGGS-------------------CCCCSCCCCC
T ss_pred             CcccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcC-------------------CCCCCCCCCC
Confidence            68999999999999999999999999999999997                   6778888876

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.44  E-value=4e-14  Score=78.17  Aligned_cols=45  Identities=20%  Similarity=0.358  Sum_probs=41.7

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVC   81 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C   81 (162)
                      .|+++|+++++|.|++|++.|.....|..|+++|+                   +++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------------~~~~~~C~~C   46 (46)
T 2yu8_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHT-------------------GGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECSSSCCEESSSHHHHHHTHHHH-------------------SCCCSCSCCC
T ss_pred             CcCcCCCCCCCeECCcCCchhCCHHHHHHHHHhcC-------------------CCCCCCCCCC
Confidence            68999999999999999999999999999999997                   6778888876

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.44  E-value=4.2e-14  Score=78.09  Aligned_cols=45  Identities=18%  Similarity=0.308  Sum_probs=41.8

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVC   81 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C   81 (162)
                      +|+++|+++++|.|++|++.|.....|..|+++|+                   +++||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------------~~k~~~C~~C   46 (46)
T 2ytg_A            2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHT-------------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECTTTCCEESSSHHHHTTGGGGS-------------------SCCSSCSCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcC-------------------CCCCCCCCCC
Confidence            68999999999999999999999999999999997                   6778888877

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.44  E-value=4.9e-14  Score=77.90  Aligned_cols=45  Identities=18%  Similarity=0.296  Sum_probs=41.7

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVC   81 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C   81 (162)
                      .|+++|+++++|.|++|++.|.....|..|+++|+                   +++||.|++|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------------~~~~~~C~~C   46 (46)
T 2ytm_A            2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHT-------------------GQRPSGPSSG   46 (46)
T ss_dssp             CSCCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHH-------------------SCCCCCCCCC
T ss_pred             CCCcCCCCCCCcCCCCCCchhCCHHHHHHHHHHcC-------------------CCCCCCCCCC
Confidence            68899999999999999999999999999999997                   6778888877

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.44  E-value=7.3e-14  Score=77.15  Aligned_cols=45  Identities=16%  Similarity=0.254  Sum_probs=41.8

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVC   81 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C   81 (162)
                      .|+++|+++++|.|++|++.|.....|..|+++|+                   +++||.|++|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------------~~~~~~C~~C   46 (46)
T 2em8_A            2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHT-------------------GEKLSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCCSEECSSSCCEESSHHHHHHHHHHHH-------------------CCCCCCSCCC
T ss_pred             CCCCCCCCCCCeECcccCchhCCHHHHHHHHHHHc-------------------CCCCCCCCCC
Confidence            68899999999999999999999999999999997                   6778888877

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.43  E-value=1e-13  Score=87.98  Aligned_cols=71  Identities=21%  Similarity=0.225  Sum_probs=57.1

Q ss_pred             CceeecCccCCccCChhHHHHHHHh-cCCCCCCCCCCCCCcCccCCCCCCceecCCCccccccchhHhhhhccccccccC
Q 040287           26 GRVFECKTCNRQFPSFQALGGHRAS-HKKPRLTDGTGGGADTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALH  104 (162)
Q Consensus        26 ~k~~~C~~C~k~f~~~~~L~~H~~~-h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~  104 (162)
                      ...|.|.+|++.|.....|..|++. |.++++....           .-++|.|.+|++.|.+...|.+|+++|++++++
T Consensus        23 ~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~-----------~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   91 (95)
T 2ej4_A           23 QLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNH-----------VCYWEECPREGKSFKAKYKLVNHIRVHTGEKSG   91 (95)
T ss_dssp             CSSSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCC-----------CCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCCC
T ss_pred             cCCCcccccccccCCHHHHHHHHHHhccCCCCCCcc-----------ceeccCCCCCCcccCCHHHHHHHHHhcCCCCCC
Confidence            3458899999999999999999998 8754332100           112399999999999999999999999999987


Q ss_pred             CCC
Q 040287          105 GNE  107 (162)
Q Consensus       105 ~~~  107 (162)
                      .+.
T Consensus        92 ~C~   94 (95)
T 2ej4_A           92 PSS   94 (95)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            654

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=9e-14  Score=76.97  Aligned_cols=45  Identities=20%  Similarity=0.272  Sum_probs=41.5

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHH-hcCCCCCCCCCCCCCcCccCCCCCCceecCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRA-SHKKPRLTDGTGGGADTQQSPAKPRTHECSVC   81 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~-~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C   81 (162)
                      .|+++|+++++|.|++|++.|.....|..|++ +|+                   +++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~-------------------~~k~~~C~~C   47 (47)
T 2epx_A            2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHT-------------------GEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTT-------------------TSCSSSCCCC
T ss_pred             ccccccCCCCCEECCccCchhCChHHHHHHhHhhcC-------------------CCCCCCCCCC
Confidence            78999999999999999999999999999999 887                   6778888876

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.43  E-value=1.7e-13  Score=78.44  Aligned_cols=49  Identities=27%  Similarity=0.556  Sum_probs=44.5

Q ss_pred             cccCCCceeecCccCCccCChhHHHHHHH-hcCCCCCCCCCCCCCcCccCCCCCCceecCCCccccccc
Q 040287           21 DMTAAGRVFECKTCNRQFPSFQALGGHRA-SHKKPRLTDGTGGGADTQQSPAKPRTHECSVCGLEFAIG   88 (162)
Q Consensus        21 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~-~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C~k~F~~~   88 (162)
                      ..|+++++|.|++|++.|.....|.+|++ +|+                   +++||.|.+|+++|+++
T Consensus         5 ~~~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~-------------------~~k~~~C~~C~k~F~~~   54 (54)
T 2eps_A            5 SSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHT-------------------SERPHKCQVWVSGPSSG   54 (54)
T ss_dssp             CCCCSSCCEECSSSCCEESSHHHHHHHHHHTSC-------------------CCCCCCSSSSCCSSCCC
T ss_pred             CCCCCCCCeECCCCCcccCCHHHHHHHHHHhcC-------------------CCCCccCCCCCCCCCCC
Confidence            46888999999999999999999999997 786                   78899999999999863

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.42  E-value=1.5e-13  Score=75.86  Aligned_cols=45  Identities=22%  Similarity=0.341  Sum_probs=40.8

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVC   81 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C   81 (162)
                      .|+++|+++++|.|++|++.|.....|..|+++|+                   +++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------------~~k~~~C~~~   46 (46)
T 2em2_A            2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHT-------------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSEECSSSCCEESSHHHHHHHHHHHC-------------------CCCSSCSSCC
T ss_pred             CCCCCCCCCCCEECCcCCchhCCHHHHHHHHHHhC-------------------CCCCCCCCCC
Confidence            68999999999999999999999999999999998                   6677777754

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.39  E-value=3.1e-13  Score=74.57  Aligned_cols=38  Identities=29%  Similarity=0.493  Sum_probs=35.1

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPR   55 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~   55 (162)
                      .|+++|+++++|.|.+|++.|.....|..|+++|++++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k   39 (46)
T 2em4_A            2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEK   39 (46)
T ss_dssp             CSCCCCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSS
T ss_pred             CCccccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCC
Confidence            68999999999999999999999999999999998433

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.39  E-value=3.1e-13  Score=74.54  Aligned_cols=38  Identities=24%  Similarity=0.474  Sum_probs=35.1

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPR   55 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~   55 (162)
                      +|+++|+++++|.|++|++.|.....|..|+++|++++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k   39 (46)
T 2emj_A            2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEK   39 (46)
T ss_dssp             CCCCCCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSC
T ss_pred             CCCCCCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCC
Confidence            68999999999999999999999999999999998433

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.38  E-value=2.3e-13  Score=77.81  Aligned_cols=51  Identities=8%  Similarity=0.040  Sum_probs=47.2

Q ss_pred             hhhhcCCCCCCccccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCC
Q 040287            5 LMFMSQGGHFDAVNSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLT   57 (162)
Q Consensus         5 ~k~f~~~~~l~~~~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~   57 (162)
                      +|.|.+...|.  .|+++|+++++|.|.+|++.|.....|..|+++|++++||
T Consensus         3 ~k~~~~~~~l~--~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   53 (54)
T 1yui_A            3 AKRAKHPPGTE--KPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPG   53 (54)
T ss_dssp             CCCCSCSSCCC--CCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHTTTSCC
T ss_pred             ccccCCCcchh--hHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhccCCCC
Confidence            47788888998  9999999999999999999999999999999999977765

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=3.5e-13  Score=74.34  Aligned_cols=38  Identities=24%  Similarity=0.425  Sum_probs=35.0

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPR   55 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~   55 (162)
                      .|+++|+++++|.|.+|++.|.....|..|+++|++++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k   39 (46)
T 2ytp_A            2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEK   39 (46)
T ss_dssp             CCCCSSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCC
T ss_pred             CcccCcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCC
Confidence            68999999999999999999999999999999998433

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=4.3e-13  Score=73.86  Aligned_cols=38  Identities=21%  Similarity=0.490  Sum_probs=35.1

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPR   55 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~   55 (162)
                      .|+++|+++++|.|++|++.|.....|..|+++|++++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k   39 (46)
T 2eow_A            2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEK   39 (46)
T ss_dssp             CCCCCSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCS
T ss_pred             CccCCCCCCCCeeccccCChhcCHHHHHHHHHHcCCCC
Confidence            68999999999999999999999999999999998433

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=3.6e-13  Score=74.22  Aligned_cols=45  Identities=18%  Similarity=0.300  Sum_probs=40.8

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVC   81 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C   81 (162)
                      .++++|+++++|.|++|++.|.....|..|+++|+                   +++||.|++|
T Consensus         2 s~~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------------~~k~~~C~~C   46 (46)
T 2ep0_A            2 SSGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHT-------------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSTTCCSEECSSSCCEESSHHHHHHHHTTTS-------------------SSCCCSCCCC
T ss_pred             CCCCCCCCCCCeeCcccCcccCChHHHHHHHHHhC-------------------CCCCCCCCCC
Confidence            46789999999999999999999999999999987                   6778888877

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=4.6e-13  Score=73.79  Aligned_cols=39  Identities=23%  Similarity=0.437  Sum_probs=35.6

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRL   56 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~   56 (162)
                      .|+++|+++++|.|++|++.|.....|..|+++|+++++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~   40 (46)
T 2emi_A            2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKP   40 (46)
T ss_dssp             CCCCSCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCC
T ss_pred             CCCcccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCC
Confidence            789999999999999999999999999999999984433

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=4.7e-13  Score=73.77  Aligned_cols=37  Identities=24%  Similarity=0.513  Sum_probs=34.8

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKP   54 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~   54 (162)
                      +|+++|+++++|.|++|++.|.....|..|+++|+++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~   38 (46)
T 2em3_A            2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGE   38 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCC
T ss_pred             CCCCCCCCCcCeECCCCCcccCCHHHHHHHHHHhCCC
Confidence            7899999999999999999999999999999999843

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.37  E-value=5.5e-14  Score=86.09  Aligned_cols=53  Identities=17%  Similarity=0.374  Sum_probs=48.5

Q ss_pred             chhhhhcCCCCCCccccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCC
Q 040287            3 NCLMFMSQGGHFDAVNSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLT   57 (162)
Q Consensus         3 ~C~k~f~~~~~l~~~~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~   57 (162)
                      .|++.|.....|.  .|+++|+++++|.|.+|++.|.....|..|+++|++++||
T Consensus        23 ~C~~~f~~~~~l~--~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~   75 (77)
T 2cot_A           23 ECGKSFSHSSDLS--KHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPS   75 (77)
T ss_dssp             SSCCBCSCHHHHH--HHHTTTCCSCSEECSSSCCEESSHHHHHHHGGGSCCCCCC
T ss_pred             CCCcccCCHHHHH--HHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhCCCCCC
Confidence            6999999999998  9999999999999999999999999999999999854443

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=3.7e-13  Score=74.18  Aligned_cols=37  Identities=22%  Similarity=0.432  Sum_probs=34.5

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKP   54 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~   54 (162)
                      .|+++|+++++|.|++|++.|.....|..|+++|+++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~   38 (46)
T 2enf_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGE   38 (46)
T ss_dssp             CCCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTS
T ss_pred             CCCcCCCCCcCeECCCCCcccCCHHHHHHHHHhhCCC
Confidence            6899999999999999999999999999999999733

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=4.7e-13  Score=73.82  Aligned_cols=39  Identities=26%  Similarity=0.500  Sum_probs=35.5

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRL   56 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~   56 (162)
                      .|+++|+++++|.|++|++.|.....|..|+++|+++++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2eoh_A            2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERS   40 (46)
T ss_dssp             CCCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCS
T ss_pred             CCCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCC
Confidence            689999999999999999999999999999999984433

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.37  E-value=4.7e-13  Score=72.26  Aligned_cols=38  Identities=18%  Similarity=0.377  Sum_probs=34.4

Q ss_pred             cccccCCCceeecCccCCccCChhHHHHHHHhcCCCCC
Q 040287           19 SVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRL   56 (162)
Q Consensus        19 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~   56 (162)
                      |+++|+++++|.|++|++.|.....|..|+++|+++++
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   38 (42)
T 2el5_A            1 GSSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESG   38 (42)
T ss_dssp             CCSSSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCS
T ss_pred             CCCCCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCC
Confidence            68899999999999999999999999999999984433

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=5e-13  Score=73.61  Aligned_cols=38  Identities=24%  Similarity=0.455  Sum_probs=35.0

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPR   55 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~   55 (162)
                      .|+++|+++++|.|++|++.|.....|..|+++|++++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k   39 (46)
T 2ytf_A            2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEK   39 (46)
T ss_dssp             CCCCSSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSS
T ss_pred             CCCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCC
Confidence            68999999999999999999999999999999998433

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=4.3e-13  Score=73.93  Aligned_cols=38  Identities=21%  Similarity=0.541  Sum_probs=35.0

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPR   55 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~   55 (162)
                      .|+++|+++++|.|++|++.|.....|..|+++|++++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k   39 (46)
T 2eq2_A            2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEK   39 (46)
T ss_dssp             CCCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCC
T ss_pred             CcccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCC
Confidence            68999999999999999999999999999999998433

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=4.6e-13  Score=73.80  Aligned_cols=37  Identities=22%  Similarity=0.304  Sum_probs=34.6

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKP   54 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~   54 (162)
                      .|+++|+++++|.|++|++.|.....|..|+++|+++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~   38 (46)
T 2emg_A            2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGE   38 (46)
T ss_dssp             CCCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHhCCC
Confidence            6899999999999999999999999999999999843

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=5.1e-13  Score=73.55  Aligned_cols=38  Identities=21%  Similarity=0.422  Sum_probs=34.9

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPR   55 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~   55 (162)
                      .|+++|+++++|.|++|++.|.....|..|+++|++++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~   39 (46)
T 2yts_A            2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEK   39 (46)
T ss_dssp             CCSCCCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCC
T ss_pred             CCCCCCCCCcCEECCCCChhhCChHHHHHHHHhcCCCC
Confidence            68999999999999999999999999999999998433

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=4.9e-13  Score=73.72  Aligned_cols=37  Identities=19%  Similarity=0.457  Sum_probs=34.5

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKP   54 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~   54 (162)
                      .|+++|+++++|.|++|++.|.....|..|+++|+++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~   38 (46)
T 2em6_A            2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGE   38 (46)
T ss_dssp             CCCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSS
T ss_pred             CCccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCC
Confidence            6899999999999999999999999999999999743

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=6.1e-13  Score=71.76  Aligned_cols=38  Identities=16%  Similarity=0.336  Sum_probs=34.4

Q ss_pred             cccccCCCceeecCccCCccCChhHHHHHHHhcCCCCC
Q 040287           19 SVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRL   56 (162)
Q Consensus        19 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~   56 (162)
                      |+++|+++++|.|++|++.|.....|..|+++|+++++
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   38 (42)
T 2yte_A            1 GSSGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSG   38 (42)
T ss_dssp             CCSSSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSS
T ss_pred             CCcCcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCC
Confidence            67899999999999999999999999999999984433

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=5.2e-13  Score=73.52  Aligned_cols=37  Identities=22%  Similarity=0.399  Sum_probs=34.7

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKP   54 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~   54 (162)
                      +|+++|+++++|.|++|++.|.....|..|+++|+++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~   38 (46)
T 2ep1_A            2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGE   38 (46)
T ss_dssp             CCCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSS
T ss_pred             ccccCCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCC
Confidence            6899999999999999999999999999999999843

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=4e-13  Score=73.99  Aligned_cols=37  Identities=19%  Similarity=0.393  Sum_probs=34.7

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKP   54 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~   54 (162)
                      .|+++|+++++|.|.+|++.|.....|..|+++|+++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~   38 (46)
T 2eor_A            2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGE   38 (46)
T ss_dssp             CSSSSSSCCCSEECTTTCCEESSHHHHHHHHHHHHSC
T ss_pred             CCCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCC
Confidence            6899999999999999999999999999999999843

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=5.8e-13  Score=73.43  Aligned_cols=38  Identities=24%  Similarity=0.503  Sum_probs=35.1

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPR   55 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~   55 (162)
                      .|+++|+++++|.|++|++.|.....|..|+++|++++
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k   39 (46)
T 2en9_A            2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEK   39 (46)
T ss_dssp             CCCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHcCCCC
Confidence            68999999999999999999999999999999998433

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.36  E-value=6.7e-13  Score=72.43  Aligned_cols=39  Identities=26%  Similarity=0.411  Sum_probs=35.6

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRL   56 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~   56 (162)
                      +|+++|+++++|.|++|++.|.....|..|+++|+++++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (44)
T 2yu5_A            2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSG   40 (44)
T ss_dssp             CCSCCCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCS
T ss_pred             CCccccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCC
Confidence            789999999999999999999999999999999984443

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=5.5e-13  Score=73.52  Aligned_cols=39  Identities=21%  Similarity=0.465  Sum_probs=35.5

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRL   56 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~   56 (162)
                      .|+++|+++++|.|++|++.|.....|..|+++|++++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2yth_A            2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKP   40 (46)
T ss_dssp             CCCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCC
T ss_pred             CcccCCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCC
Confidence            689999999999999999999999999999999984433

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=4.5e-13  Score=73.93  Aligned_cols=37  Identities=19%  Similarity=0.409  Sum_probs=34.4

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKP   54 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~   54 (162)
                      .|+++|+++++|.|++|++.|.....|..|+++|+++
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~   38 (46)
T 2eon_A            2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGE   38 (46)
T ss_dssp             CCSSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSC
T ss_pred             CCCCCCCCCcccCCCCCCcccCcHHHHHHHHHhcCCC
Confidence            6889999999999999999999999999999999743

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=6e-13  Score=73.26  Aligned_cols=37  Identities=19%  Similarity=0.401  Sum_probs=34.5

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKP   54 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~   54 (162)
                      .|+++|+++++|.|++|++.|.....|..|+++|+++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~   38 (46)
T 2yrj_A            2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGE   38 (46)
T ss_dssp             CCCCCCCCCCCEECSSSCCEESSHHHHHHHHTTTSSC
T ss_pred             CCccCCCCCCCeECCCCCCccCCHHHHHHHHHHcCCC
Confidence            6899999999999999999999999999999999743

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=6.4e-13  Score=73.26  Aligned_cols=39  Identities=23%  Similarity=0.433  Sum_probs=35.6

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRL   56 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~   56 (162)
                      +|+++|+++++|.|++|++.|.....|..|+++|+++++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2yto_A            2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERH   40 (46)
T ss_dssp             CCCCCCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCB
T ss_pred             CcccccCCCCCEECcccCCccCCHhHHHHHHHHcCCCCC
Confidence            789999999999999999999999999999999984433

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=5.5e-13  Score=73.49  Aligned_cols=38  Identities=18%  Similarity=0.472  Sum_probs=35.0

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPR   55 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~   55 (162)
                      +|+++|+++++|.|++|++.|.....|..|+++|++++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k   39 (46)
T 2eq1_A            2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEK   39 (46)
T ss_dssp             CCCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSC
T ss_pred             CcccccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCC
Confidence            68999999999999999999999999999999998433

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=4.6e-13  Score=73.81  Aligned_cols=38  Identities=21%  Similarity=0.477  Sum_probs=34.9

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPR   55 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~   55 (162)
                      .|+++|+++++|.|++|++.|.....|..|+++|++++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k   39 (46)
T 2yti_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEK   39 (46)
T ss_dssp             CCCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSC
T ss_pred             CCCcCCCCCcCeECCCCCcccCChhHHHHHhHhcCCCC
Confidence            68999999999999999999999999999999998433

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.35  E-value=5.7e-13  Score=73.48  Aligned_cols=36  Identities=22%  Similarity=0.496  Sum_probs=34.2

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKK   53 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~   53 (162)
                      .|+++|+++++|.|.+|++.|.....|..|+++|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2eoy_A            2 SSGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTR   37 (46)
T ss_dssp             CCCCCCCCSCCEECSSSCCEESSSHHHHHHHTTCCS
T ss_pred             CCccccCCCCCEECcCCCCcCCCHHHHHHHHHHcCC
Confidence            689999999999999999999999999999999973

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=7.5e-13  Score=72.12  Aligned_cols=39  Identities=21%  Similarity=0.380  Sum_probs=35.6

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRL   56 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~   56 (162)
                      .|+++|+++++|.|++|++.|.....|..|+++|+++++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (44)
T 2eof_A            2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESG   40 (44)
T ss_dssp             CCSSCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSC
T ss_pred             CCccCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCC
Confidence            689999999999999999999999999999999984443

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=5e-13  Score=72.90  Aligned_cols=38  Identities=21%  Similarity=0.404  Sum_probs=35.1

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPR   55 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~   55 (162)
                      .|+++|+++++|.|++|++.|.....|..|+++|++++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~   39 (44)
T 2eoj_A            2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQS   39 (44)
T ss_dssp             CSCCSSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSC
T ss_pred             CCccccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCC
Confidence            68999999999999999999999999999999998443

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.34  E-value=8.7e-13  Score=80.75  Aligned_cols=68  Identities=18%  Similarity=0.255  Sum_probs=61.0

Q ss_pred             CCCCccccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCCccccccchhH
Q 040287           12 GHFDAVNSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVCGLEFAIGQAL   91 (162)
Q Consensus        12 ~~l~~~~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C~k~F~~~~~L   91 (162)
                      ..|.  .|+++|.+++++.|..|++.|. ...|..|+ .|.                   +++||.|+.|++.|. ...|
T Consensus         3 ~~L~--~H~~~~c~~r~~~C~~C~~~~~-~~~L~~H~-~~c-------------------~~~~~~C~~C~~~~~-~~~l   58 (75)
T 2d9k_A            3 SGSS--GHEETECPLRLAVCQHCDLELS-ILKLKEHE-DYC-------------------GARTELCGNCGRNVL-VKDL   58 (75)
T ss_dssp             CCCS--CCCCCCCCCCCEECSSSCCEEC-HHHHHHHH-HHH-------------------HHCEEECSSSCCEEE-TTGG
T ss_pred             hHHH--hhCcccCCCcccCCcccChHhh-HHHHHHHH-hHc-------------------CCCceEcccCCCcCc-HHHH
Confidence            4566  9999999999999999999995 89999999 776                   788999999999988 5999


Q ss_pred             hhhhcccccccc
Q 040287           92 GGHMRRHRAVAL  103 (162)
Q Consensus        92 ~~H~~~H~~~~~  103 (162)
                      ..|+++|++++.
T Consensus        59 ~~H~~~c~~~~~   70 (75)
T 2d9k_A           59 KTHPEVCGREGS   70 (75)
T ss_dssp             GTHHHHBTTBSS
T ss_pred             HHHHHHccCCcC
Confidence            999999998855

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.34  E-value=6.9e-13  Score=82.94  Aligned_cols=67  Identities=22%  Similarity=0.462  Sum_probs=60.1

Q ss_pred             CceeecCc--cCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecC--CCccccccchhHhhhhcccccc
Q 040287           26 GRVFECKT--CNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECS--VCGLEFAIGQALGGHMRRHRAV  101 (162)
Q Consensus        26 ~k~~~C~~--C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~--~C~k~F~~~~~L~~H~~~H~~~  101 (162)
                      .++|.|.+  |++.|.....|..|++.|.                   ++++|.|+  .|++.|.+...|.+|+++|+++
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~-------------------~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~   63 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSSHLKAHLRTHT-------------------GEKPYHCDWDGCGWKFARSDELTRHYRKHTGH   63 (89)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHHTTSC-------------------SSCCEECCSTTTCCEESSHHHHHHHHHHHHCC
T ss_pred             CCCeeCCCCCCCCcCCCHHHHHHHHHhcC-------------------CCCCcCCCCCCCCCccCCHHHHHHHHHHcCCC
Confidence            56899999  9999999999999999886                   77899997  5999999999999999999999


Q ss_pred             ccCCCCcccc
Q 040287          102 ALHGNEKVST  111 (162)
Q Consensus       102 ~~~~~~~~~~  111 (162)
                      ++..+..+..
T Consensus        64 ~~~~C~~C~~   73 (89)
T 2wbs_A           64 RPFQCQKCDR   73 (89)
T ss_dssp             CCEECSSSSC
T ss_pred             CCccCCCCCc
Confidence            9877766543

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.34  E-value=8e-14  Score=84.71  Aligned_cols=53  Identities=17%  Similarity=0.362  Sum_probs=49.7

Q ss_pred             chhhhhcCCCCCCccccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCC
Q 040287            3 NCLMFMSQGGHFDAVNSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLT   57 (162)
Q Consensus         3 ~C~k~f~~~~~l~~~~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~   57 (162)
                      .|++.|.....|.  .|+++|+++++|.|.+|++.|.....|..|+++|++++||
T Consensus        22 ~C~k~f~~~~~l~--~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           22 RCQASFRYKGNLA--SHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             TSSCCBSCHHHHH--HHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHHCCSCCC
T ss_pred             CCCceeCCHHHHH--HHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            6999999999998  9999999999999999999999999999999999977664

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=6.3e-13  Score=72.43  Aligned_cols=39  Identities=21%  Similarity=0.264  Sum_probs=35.4

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRL   56 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~   56 (162)
                      .|+++|+++++|.|++|++.|.....|..|+++|+++++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (44)
T 2en7_A            2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESG   40 (44)
T ss_dssp             CSCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSS
T ss_pred             CCCcCCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCC
Confidence            689999999999999999999999999999999984433

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=6.3e-13  Score=73.28  Aligned_cols=39  Identities=21%  Similarity=0.401  Sum_probs=35.6

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRL   56 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~   56 (162)
                      +|+++|+++++|.|++|++.|.....|..|+++|+++++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (46)
T 2eoz_A            2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETL   40 (46)
T ss_dssp             CSCCCCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCS
T ss_pred             CccccCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCC
Confidence            689999999999999999999999999999999984433

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.33  E-value=1.4e-12  Score=71.81  Aligned_cols=43  Identities=26%  Similarity=0.385  Sum_probs=40.1

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      .|+++|++++||.|++||+.|.+.+.|.+|+++|++++++.+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2el4_A            2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCSEECSSSSCEESSHHHHHHHGGGSSSCCCSCCT
T ss_pred             ccccCCCCCCceECCCCCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            6888999999999999999999999999999999999987664

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.33  E-value=1.1e-12  Score=70.85  Aligned_cols=41  Identities=24%  Similarity=0.354  Sum_probs=38.0

Q ss_pred             CccCCCCCCceecCCCccccccchhHhhhhccccccccCCC
Q 040287           66 TQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGN  106 (162)
Q Consensus        66 h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~  106 (162)
                      |+++|++++||.|++|+++|.+.+.|.+|+++|+++++..+
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   41 (42)
T 2el5_A            1 GSSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS   41 (42)
T ss_dssp             CCSSSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCSCCC
T ss_pred             CCCCCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCCCCC
Confidence            67789999999999999999999999999999999988654

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.33  E-value=1.8e-12  Score=82.71  Aligned_cols=69  Identities=20%  Similarity=0.419  Sum_probs=61.6

Q ss_pred             CCCceeecCc--cCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecC--CCccccccchhHhhhhcccc
Q 040287           24 AAGRVFECKT--CNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECS--VCGLEFAIGQALGGHMRRHR   99 (162)
Q Consensus        24 ~~~k~~~C~~--C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~--~C~k~F~~~~~L~~H~~~H~   99 (162)
                      ..+++|.|..  |++.|.....|..|++.|.                   ++++|.|.  .|++.|.+...|.+|+++|+
T Consensus        11 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~-------------------~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~   71 (100)
T 2ebt_A           11 EKRRIHYCDYPGCTKVYTKSSHLKAHLRTHT-------------------GEKPYKCTWEGCDWRFARSDELTRHYRKHT   71 (100)
T ss_dssp             CSCCCEECCSSSCCCEESCHHHHHHHHHHHS-------------------CCCCEECCSSSCCCEESSHHHHHHHHHHHT
T ss_pred             ccCcceEcCCCCCCCcccCHHHHHHHHHHhC-------------------CCCCeeCCCCCCCCccCCHHHHHHHHHHhC
Confidence            3567899997  9999999999999999997                   77899996  59999999999999999999


Q ss_pred             ccccCCCCcccc
Q 040287          100 AVALHGNEKVST  111 (162)
Q Consensus       100 ~~~~~~~~~~~~  111 (162)
                      ++++..+..+..
T Consensus        72 ~~~~~~C~~C~~   83 (100)
T 2ebt_A           72 GAKPFQCGVCNR   83 (100)
T ss_dssp             SCCSCBCSSSCC
T ss_pred             CCCCeECCCCcC
Confidence            999988776554

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=1e-12  Score=72.46  Aligned_cols=38  Identities=21%  Similarity=0.501  Sum_probs=34.9

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPR   55 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~   55 (162)
                      .|+++|+++++|.|++|++.|.....|..|+++|++++
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k   39 (46)
T 2enh_A            2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEK   39 (46)
T ss_dssp             CCCCCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSC
T ss_pred             CCCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCC
Confidence            68899999999999999999999999999999998443

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.33  E-value=9.5e-13  Score=71.80  Aligned_cols=40  Identities=20%  Similarity=0.318  Sum_probs=36.1

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLT   57 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~   57 (162)
                      .|+++|+++++|.|++|++.|.....|..|+++|+++++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (44)
T 2emb_A            2 SSGSSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSGP   41 (44)
T ss_dssp             CCCSCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCCT
T ss_pred             CcccccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCc
Confidence            6899999999999999999999999999999999854443

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=1.1e-12  Score=70.69  Aligned_cols=41  Identities=22%  Similarity=0.376  Sum_probs=38.1

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHG  105 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~  105 (162)
                      +|+++|++++||.|++||++|.+.+.|.+|+++|+++++..
T Consensus         1 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   41 (42)
T 2ytb_A            1 GSSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSS   41 (42)
T ss_dssp             CCCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCC
T ss_pred             CCccccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCCCC
Confidence            47889999999999999999999999999999999998854

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=1.1e-12  Score=72.18  Aligned_cols=44  Identities=23%  Similarity=0.354  Sum_probs=40.4

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCCc
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNEK  108 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~  108 (162)
                      .|+++|++++||.|++||++|.+.+.|.+|+++|++++++.+..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytj_A            2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSS   45 (46)
T ss_dssp             CSSCTTSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCCSSCSC
T ss_pred             CcccCCCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            68889999999999999999999999999999999999876653

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=1.5e-12  Score=71.73  Aligned_cols=43  Identities=33%  Similarity=0.488  Sum_probs=40.1

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      .|+++|++++||.|++||++|.+.+.|.+|+++|+++++..+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2eml_A            2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS   44 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHGGGSSCCCSCSS
T ss_pred             CccCCcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCC
Confidence            5888999999999999999999999999999999999987664

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=6.8e-13  Score=71.58  Aligned_cols=40  Identities=18%  Similarity=0.343  Sum_probs=35.7

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLT   57 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~   57 (162)
                      .|+++|+++++|.|++|++.|.....|..|+++|++++||
T Consensus         1 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   40 (42)
T 2ytb_A            1 GSSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS   40 (42)
T ss_dssp             CCCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCC
T ss_pred             CCccccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCCC
Confidence            4889999999999999999999999999999999854443

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=1e-12  Score=72.41  Aligned_cols=44  Identities=25%  Similarity=0.399  Sum_probs=40.5

Q ss_pred             CcCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCC
Q 040287           64 ADTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        64 ~~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      +.|+++|++++||.|++||++|.+.+.|..|+++|+++++..+.
T Consensus         1 ~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eoo_A            1 GSSGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPS   44 (46)
T ss_dssp             CCCCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCS
T ss_pred             CCCCCCCCCCCCEEccccCcccCCHHHHHHHHHHHcCCCCCCCC
Confidence            36888999999999999999999999999999999999987664

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=1.5e-12  Score=71.75  Aligned_cols=43  Identities=23%  Similarity=0.398  Sum_probs=40.0

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      .|+++|++++||.|++||++|.+.+.|.+|+++|++++++.+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emf_A            2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPS   44 (46)
T ss_dssp             CCCSSSSSSCCEECSSSCCEESCHHHHHHHGGGTSCSSCSCCC
T ss_pred             ccccccCCCCCeECCCCCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            5888999999999999999999999999999999999987664

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=1.5e-12  Score=71.70  Aligned_cols=43  Identities=23%  Similarity=0.431  Sum_probs=40.1

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      .|+++|++++||.|++|++.|.+.+.|.+|+++|++++++.+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yth_A            2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCC
T ss_pred             CcccCCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            5888999999999999999999999999999999999987664

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=4.8e-13  Score=73.78  Aligned_cols=45  Identities=18%  Similarity=0.352  Sum_probs=40.7

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVC   81 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C   81 (162)
                      ..+++|+++++|.|++|++.|.....|..|+++|+                   +++||.|++|
T Consensus         2 ~~~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------------~~k~~~C~~C   46 (46)
T 2ytt_A            2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHT-------------------REKPSGPSSG   46 (46)
T ss_dssp             CCSSSCSCCCTTCCSSSCCCCSSHHHHHHHHTHHH-------------------HCCCCSCCCC
T ss_pred             CCCCCCCCCCCeeCCCCCcccCCHHHHHHHHHHcC-------------------CCCCCCCCCC
Confidence            45688999999999999999999999999999997                   6778888877

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=1.4e-12  Score=71.83  Aligned_cols=44  Identities=25%  Similarity=0.405  Sum_probs=40.5

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCCc
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNEK  108 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~  108 (162)
                      .|+++|++++||.|++|+++|.+.+.|.+|+++|++++++.+..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep2_A            2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSS   45 (46)
T ss_dssp             CSSSCSSCCCSEECSSSCCEESSHHHHHHHHHTTSSCCSCCSCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            58889999999999999999999999999999999999876653

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.32  E-value=1.5e-12  Score=70.18  Aligned_cols=39  Identities=18%  Similarity=0.348  Sum_probs=35.3

Q ss_pred             cccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCC
Q 040287           19 SVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLT   57 (162)
Q Consensus        19 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~   57 (162)
                      |+++|+++++|.|++|++.|.....|..|+++|++++||
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~   40 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPS   40 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCC
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCC
Confidence            788999999999999999999999999999999855444

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=1.2e-12  Score=71.38  Aligned_cols=42  Identities=21%  Similarity=0.335  Sum_probs=39.1

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGN  106 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~  106 (162)
                      .|+++|++++||.|++|+++|.+.+.|.+|+++|+++++..+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eoj_A            2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS   43 (44)
T ss_dssp             CSCCSSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCSCCC
T ss_pred             CCccccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCC
Confidence            588899999999999999999999999999999999988654

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.32  E-value=8.6e-14  Score=90.25  Aligned_cols=60  Identities=18%  Similarity=0.283  Sum_probs=53.3

Q ss_pred             cchhhhhcCCCCCCcccccc-cc---CCCceeecCccCCccCChhHHHHH-HHhcCCCCCCCCCCCCCcCccCCCCCCce
Q 040287            2 ANCLMFMSQGGHFDAVNSVD-MT---AAGRVFECKTCNRQFPSFQALGGH-RASHKKPRLTDGTGGGADTQQSPAKPRTH   76 (162)
Q Consensus         2 a~C~k~f~~~~~l~~~~h~~-~h---~~~k~~~C~~C~k~f~~~~~L~~H-~~~h~~~~~~~~~~~l~~h~~~h~~~kp~   76 (162)
                      ..|++.|.+...|.  .|++ +|   ++++||.|++||+.|.....|..| +++|+                   |++||
T Consensus        22 ~~Cgk~F~~~~~L~--~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Ht-------------------gekpy   80 (102)
T 2ghf_A           22 KYCTFQTPDLNMFT--FHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHP-------------------GEENF   80 (102)
T ss_dssp             SSCSCEESCHHHHH--HHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTST-------------------TCCCE
T ss_pred             CCCCCccCCHHHHH--HHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcC-------------------CCCCe
Confidence            36999999999999  9997 59   678999999999999999999999 78887                   78889


Q ss_pred             ecCCCc
Q 040287           77 ECSVCG   82 (162)
Q Consensus        77 ~C~~C~   82 (162)
                      .|.++.
T Consensus        81 ~C~~~~   86 (102)
T 2ghf_A           81 KLTMVK   86 (102)
T ss_dssp             EEEECC
T ss_pred             eCCccc
Confidence            998743

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=6.8e-13  Score=73.15  Aligned_cols=38  Identities=26%  Similarity=0.528  Sum_probs=35.2

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPR   55 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~   55 (162)
                      +|+++|+++++|.|++|++.|.....|..|+++|++++
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k   39 (46)
T 2emz_A            2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREK   39 (46)
T ss_dssp             CCCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTT
T ss_pred             CCCcCCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCC
Confidence            68999999999999999999999999999999998433

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.32  E-value=1.1e-12  Score=71.92  Aligned_cols=43  Identities=16%  Similarity=0.336  Sum_probs=39.8

Q ss_pred             cccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCCc
Q 040287           21 DMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVCG   82 (162)
Q Consensus        21 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C~   82 (162)
                      .+|+++++|.|++|++.|.....|..|+++|+                   ++++|.|+.||
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~-------------------~~~~~~C~~cg   45 (45)
T 2epq_A            3 SGSSGEKPYSCPVCGLRFKRKDRMSYHVRSHD-------------------GSVGKSGPSSG   45 (45)
T ss_dssp             CCCSSCCSSEETTTTEECSCHHHHHHHHHHHS-------------------CCCCCCCCCCC
T ss_pred             CCcCCCCCCcCCCCCcccCCHHHHHHHHHHcc-------------------CCCCCCCcCCC
Confidence            46899999999999999999999999999997                   77889999986

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=1.6e-12  Score=71.62  Aligned_cols=43  Identities=21%  Similarity=0.324  Sum_probs=40.1

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      +|+++|++++||.|++|+++|.+.+.|.+|+++|+++++..+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2ep3_A            2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPS   44 (46)
T ss_dssp             CCCSSSSCCCSEECSSSCCEESSHHHHHHHHTTTTTSCCCCTT
T ss_pred             CCCCCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCC
Confidence            5888999999999999999999999999999999999987664

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.32  E-value=1.7e-12  Score=71.48  Aligned_cols=43  Identities=21%  Similarity=0.382  Sum_probs=40.0

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      .|+++|++++||.|++|++.|.+.+.|.+|+++|++++++.+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ema_A            2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS   44 (46)
T ss_dssp             CSCSSCTTSCCEECSSSCCEESSHHHHHHHHTGGGCCCCCSSS
T ss_pred             CCccCCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCC
Confidence            5888999999999999999999999999999999999987664

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=1.4e-12  Score=71.86  Aligned_cols=43  Identities=33%  Similarity=0.403  Sum_probs=40.0

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      .|+++|++++||.|.+|++.|.+.+.|.+|+++|++++++.+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytp_A            2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCCCSSC
T ss_pred             CcccCcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            5888999999999999999999999999999999999987664

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.31  E-value=1.6e-12  Score=71.53  Aligned_cols=43  Identities=21%  Similarity=0.322  Sum_probs=40.0

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      .|+++|++++||.|++|++.|.+.+.|.+|+++|++++++.+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2em0_A            2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSS
T ss_pred             CCcCccCCCcCeECCCCCcccCCHHHHHHHHHHcCCCCCcCCC
Confidence            5888999999999999999999999999999999999987664

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=1.7e-12  Score=71.36  Aligned_cols=43  Identities=23%  Similarity=0.349  Sum_probs=40.0

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      .|+++|++++||.|++||++|.+.+.|.+|+++|+++++..+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2epw_A            2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPS   44 (46)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSSHHHHHHHHHCCSCCCSCCC
T ss_pred             cCcccCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            5888999999999999999999999999999999999987664

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=1.6e-12  Score=71.59  Aligned_cols=43  Identities=21%  Similarity=0.346  Sum_probs=40.0

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      .|+++|++++||.|++|++.|.+.+.|.+|+++|++++++.+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytn_A            2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCC
T ss_pred             CCCcCCCCCcCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCC
Confidence            5888999999999999999999999999999999999987664

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=2.1e-12  Score=71.09  Aligned_cols=43  Identities=21%  Similarity=0.370  Sum_probs=40.0

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      .|+++|++++||.|++|+++|.+.+.|.+|+++|+++++..+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytg_A            2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCSSCCSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            5888999999999999999999999999999999999987664

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=1.1e-12  Score=72.21  Aligned_cols=38  Identities=24%  Similarity=0.491  Sum_probs=35.0

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPR   55 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~   55 (162)
                      .|+++|+++++|.|++|++.|.....|..|+++|++++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k   39 (46)
T 2eq3_A            2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKK   39 (46)
T ss_dssp             CCCCSSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCC
T ss_pred             CcccCCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCC
Confidence            68999999999999999999999999999999998433

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=1.8e-12  Score=71.34  Aligned_cols=43  Identities=33%  Similarity=0.458  Sum_probs=39.9

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      .|+++|++++||.|++|++.|.+.+.|.+|+++|+++++..+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emi_A            2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPS   44 (46)
T ss_dssp             CCCCSCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCCCSCC
T ss_pred             CCCcccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCCC
Confidence            5888999999999999999999999999999999999987654

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=1.6e-12  Score=70.87  Aligned_cols=42  Identities=24%  Similarity=0.279  Sum_probs=38.9

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGN  106 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~  106 (162)
                      .|+++|++++||.|++|+++|.+...|.+|+++|++++++.+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2yu5_A            2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSS   43 (44)
T ss_dssp             CCSCCCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCC
T ss_pred             CCccccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCC
Confidence            588899999999999999999999999999999999988654

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=1.6e-12  Score=71.56  Aligned_cols=43  Identities=21%  Similarity=0.317  Sum_probs=40.0

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      .|+++|++++||.|++|++.|.+.+.|.+|+++|++++++.+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enf_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCS
T ss_pred             CCCcCCCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCCCCCC
Confidence            5888999999999999999999999999999999999987664

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.31  E-value=1.3e-12  Score=71.98  Aligned_cols=43  Identities=26%  Similarity=0.378  Sum_probs=40.1

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      +|+++|++++||.|++|++.|.+.+.|.+|+++|++++++.+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emk_A            2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCC
T ss_pred             CCCCccCCCCceECCCCCchhCCHHHHHHHHHHcCCCCCCCCC
Confidence            6888999999999999999999999999999999999987664

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.31  E-value=9.7e-13  Score=81.40  Aligned_cols=54  Identities=26%  Similarity=0.582  Sum_probs=51.3

Q ss_pred             eeec--CccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCC--CccccccchhHhhhhccccc
Q 040287           28 VFEC--KTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSV--CGLEFAIGQALGGHMRRHRA  100 (162)
Q Consensus        28 ~~~C--~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~--C~k~F~~~~~L~~H~~~H~~  100 (162)
                      ||.|  +.|++.|.....|..|+++|+                   +++||.|++  |+++|.+...|.+|+++|++
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~-------------------~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~   58 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHT-------------------QQLPYECPHEGCDKRFSLPSRLKRHEKVHAG   58 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHH-------------------TTCCEECCSTTCCCEESSHHHHHHHHHHHHS
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhC-------------------CCCCeeCCCCCCcCccCCHHHHHHHHHHhCC
Confidence            6899  999999999999999999997                   788999998  99999999999999999987

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=1.3e-12  Score=70.48  Aligned_cols=41  Identities=15%  Similarity=0.247  Sum_probs=37.9

Q ss_pred             CccCCCCCCceecCCCccccccchhHhhhhccccccccCCC
Q 040287           66 TQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGN  106 (162)
Q Consensus        66 h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~  106 (162)
                      |+++|++++||.|++|+++|.+.+.|.+|+++|+++++..+
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   41 (42)
T 2yte_A            1 GSSGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS   41 (42)
T ss_dssp             CCSSSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCC
T ss_pred             CCcCcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            67789999999999999999999999999999999988654

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=2e-12  Score=71.09  Aligned_cols=43  Identities=23%  Similarity=0.353  Sum_probs=39.9

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      .|+++|++++||.|++|+++|.+.+.|.+|+++|++++++.+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~   44 (46)
T 2yts_A            2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CCSCCCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCCC
T ss_pred             CCCCCCCCCcCEECCCCChhhCChHHHHHHHHhcCCCCCcCCC
Confidence            5888999999999999999999999999999999999987664

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=1.8e-12  Score=71.38  Aligned_cols=43  Identities=23%  Similarity=0.373  Sum_probs=40.0

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      .|+++|++++||.|++|+++|.+.+.|.+|+++|+++++..+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ene_A            2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCSSCCCSSSEECSSSCCEESSHHHHHHHHTTTCCCCCCSCC
T ss_pred             CcccCCCCCCCeECCCCCchhCChHHHHHHHhhcCCCCCCCCC
Confidence            5888999999999999999999999999999999999987664

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=2.1e-12  Score=71.05  Aligned_cols=43  Identities=23%  Similarity=0.432  Sum_probs=40.0

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      .|+++|++++||.|++||++|.+.+.|.+|+++|++++++.+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en1_A            2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CSTTCCCCCCSEEETTTTEEESSHHHHHHHGGGGSCCCCSCCC
T ss_pred             CcccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            5888999999999999999999999999999999999987664

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=1.7e-12  Score=71.43  Aligned_cols=43  Identities=23%  Similarity=0.404  Sum_probs=40.0

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      .|+++|++++||.|++|+++|.+.+.|.+|+++|++++++.+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq2_A            2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCC
T ss_pred             CcccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            5888999999999999999999999999999999999987664

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=1.9e-12  Score=71.25  Aligned_cols=43  Identities=28%  Similarity=0.461  Sum_probs=40.0

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      +|+++|++++||.|++|++.|.+.+.|.+|+++|+++++..+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eop_A            2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPS   44 (46)
T ss_dssp             CCCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCC
T ss_pred             CCccccCCCCCeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCC
Confidence            5888999999999999999999999999999999999987664

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=1.4e-12  Score=71.82  Aligned_cols=43  Identities=23%  Similarity=0.359  Sum_probs=40.0

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      .|+++|++++||.|++|++.|.+.+.|.+|+++|+++++..+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yto_A            2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS   44 (46)
T ss_dssp             CCCCCCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTTB
T ss_pred             CcccccCCCCCEECcccCCccCCHhHHHHHHHHcCCCCCCCCC
Confidence            6888999999999999999999999999999999999987664

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=1.9e-12  Score=71.22  Aligned_cols=43  Identities=26%  Similarity=0.447  Sum_probs=40.0

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      .|+++|++++||.|++|+++|.+.+.|.+|+++|+++++..+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2eoe_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS   44 (46)
T ss_dssp             CCSSCCCCCCSSEETTTTEECSSHHHHHHHHGGGSCCCSCSSC
T ss_pred             CCCCCCCCCCCeECCCcChhhCCHHHHHHHHHHcCCCCCCCCC
Confidence            5888999999999999999999999999999999999987664

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=1.9e-12  Score=71.26  Aligned_cols=44  Identities=20%  Similarity=0.314  Sum_probs=40.4

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCCc
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNEK  108 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~  108 (162)
                      .|+++|++++||.|++|+++|.+.+.|.+|+++|++++++.+..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq0_A            2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCTTCCCCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCSC
T ss_pred             CCCcCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            58889999999999999999999999999999999999876653

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=2.2e-12  Score=70.41  Aligned_cols=41  Identities=27%  Similarity=0.361  Sum_probs=38.4

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHG  105 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~  105 (162)
                      .|+++|++++||.|.+|++.|.+.+.|.+|+++|++++++.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~   42 (44)
T 2epv_A            2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPS   42 (44)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSCCC
T ss_pred             CCCcccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCCCC
Confidence            58889999999999999999999999999999999998854

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=2.1e-12  Score=70.36  Aligned_cols=42  Identities=24%  Similarity=0.347  Sum_probs=39.1

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGN  106 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~  106 (162)
                      .|+++|++++||.|++|+++|.+.+.|..|+++|++++++.+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2emb_A            2 SSGSSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSS   43 (44)
T ss_dssp             CCCSCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCCTTC
T ss_pred             CcccccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCcCC
Confidence            588899999999999999999999999999999999988654

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=1.6e-12  Score=71.66  Aligned_cols=43  Identities=28%  Similarity=0.397  Sum_probs=40.0

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      .|+++|++++||.|.+|++.|.+.+.|.+|+++|++++++.+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em4_A            2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS   44 (46)
T ss_dssp             CSCCCCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCC
T ss_pred             CCccccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCC
Confidence            5888999999999999999999999999999999999997664

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=2.2e-12  Score=70.99  Aligned_cols=43  Identities=21%  Similarity=0.313  Sum_probs=39.9

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      .|+++|++++||.|++|+++|.+.+.|.+|+++|+++++..+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em7_A            2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSSSCCCSEECSSSCCEESCHHHHHHHGGGGTTCCCSSTT
T ss_pred             CCCCCCCCCcCccCCCccchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            5788999999999999999999999999999999999987664

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.30  E-value=1.5e-12  Score=71.75  Aligned_cols=43  Identities=28%  Similarity=0.502  Sum_probs=39.9

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      .|+++|++++||.|++|++.|.+...|.+|+++|++++++.+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emj_A            2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSC
T ss_pred             CCCCCCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            5888999999999999999999999999999999999987664

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=1.6e-12  Score=71.55  Aligned_cols=43  Identities=26%  Similarity=0.366  Sum_probs=40.0

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      .|+++|++++||.|++||++|.+.+.|.+|+++|+++++..+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emy_A            2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSS
T ss_pred             CCCCCCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCC
Confidence            5888999999999999999999999999999999999987664

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=7.9e-13  Score=72.84  Aligned_cols=40  Identities=25%  Similarity=0.378  Sum_probs=36.1

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLT   57 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~   57 (162)
                      .|+++|+++++|.|++|++.|.....|..|+++|+++++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~   41 (46)
T 2en3_A            2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPS   41 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCCS
T ss_pred             ccccccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCCC
Confidence            6899999999999999999999999999999999844443

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=2.1e-12  Score=70.99  Aligned_cols=43  Identities=28%  Similarity=0.437  Sum_probs=40.0

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      .|+++|++++||.|++|+++|.+.+.|.+|+++|++++++.+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2en8_A            2 SSGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPS   44 (46)
T ss_dssp             CCCCCCCCCSSEECTTTCCEESSHHHHHHHHTTTCCSCSSCCS
T ss_pred             CccccCCCCCCeECCCcCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            5888999999999999999999999999999999999987664

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=1.5e-12  Score=71.68  Aligned_cols=43  Identities=23%  Similarity=0.308  Sum_probs=39.7

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      .|+++|++++||.|++|++.|.+...|.+|+++|++++++.+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eoh_A            2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS   44 (46)
T ss_dssp             CCCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTT
T ss_pred             CCCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            4788999999999999999999999999999999999987654

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=2.4e-12  Score=70.80  Aligned_cols=43  Identities=23%  Similarity=0.403  Sum_probs=39.9

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      .|+++|++++||.|++||+.|.+.+.|.+|+++|+++++..+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2eme_A            2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCTTCCCCSEECSSSCCEESSHHHHHHHHGGGCCCSCCSSC
T ss_pred             CCCCCCCCCCCeECCCCChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            5888999999999999999999999999999999999987654

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=2.4e-12  Score=70.92  Aligned_cols=44  Identities=20%  Similarity=0.314  Sum_probs=40.2

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCCc
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNEK  108 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~  108 (162)
                      .|+++|++++||.|++|++.|.+.+.|.+|+++|+++++..+..
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2elz_A            2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSS   45 (46)
T ss_dssp             CCCSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCC
T ss_pred             CCCCCCCCCCCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCC
Confidence            57889999999999999999999999999999999999876643

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=1.6e-12  Score=71.56  Aligned_cols=43  Identities=23%  Similarity=0.398  Sum_probs=40.0

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      .|+++|++++||.|++|+++|.+.+.|.+|+++|++++++.+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eoq_A            2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS   44 (46)
T ss_dssp             CCCCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCC
T ss_pred             CCCCCCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCC
Confidence            5888999999999999999999999999999999999987664

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.30  E-value=2.5e-12  Score=70.70  Aligned_cols=43  Identities=23%  Similarity=0.370  Sum_probs=39.9

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      .|+++|++++||.|++|+++|.+.+.|.+|+++|+++++..+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2em9_A            2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS   44 (46)
T ss_dssp             CSCCSCCCCCSEECSSSCCEESSHHHHHHHGGGGTSCCCCSTT
T ss_pred             CCCCCCCCCcCeECCccccccCChHHHHHHHHHhCCCCCCCCC
Confidence            5888999999999999999999999999999999999987654

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.30  E-value=1.5e-12  Score=72.45  Aligned_cols=43  Identities=16%  Similarity=0.312  Sum_probs=39.7

Q ss_pred             ccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCCcc
Q 040287           22 MTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVCGL   83 (162)
Q Consensus        22 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C~k   83 (162)
                      .|.++++|.|.+|++.|.....|..|+++|+                   +++||.|++|++
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------------~~k~~~C~~C~k   48 (48)
T 2epr_A            6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHS-------------------GEKPYSSGPSSG   48 (48)
T ss_dssp             CCCCCCSEEETTTTEEESSHHHHHHHGGGSC-------------------SCCCCCSCCCCC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHhcC-------------------CCCCccCCCCCC
Confidence            5778999999999999999999999999997                   788999999986

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=1.8e-12  Score=71.36  Aligned_cols=43  Identities=23%  Similarity=0.383  Sum_probs=40.0

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      .|+++|++++||.|++|+++|.+.+.|.+|+++|++++++.+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2yu8_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCCSCSC
T ss_pred             CcCcCCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCCCCCC
Confidence            5888999999999999999999999999999999999987664

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=1.8e-12  Score=70.57  Aligned_cols=42  Identities=21%  Similarity=0.294  Sum_probs=39.0

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGN  106 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~  106 (162)
                      .|+++|++++||.|++|+++|.+.+.|.+|+++|+++++..+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eof_A            2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS   43 (44)
T ss_dssp             CCSSCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCC
T ss_pred             CCccCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCC
Confidence            588899999999999999999999999999999999988654

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=9.9e-13  Score=70.97  Aligned_cols=40  Identities=20%  Similarity=0.416  Sum_probs=35.8

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLT   57 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~   57 (162)
                      .|+++|+++++|.|++|++.|.....|..|+++|++++||
T Consensus         1 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   40 (42)
T 2en2_A            1 GSSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPS   40 (42)
T ss_dssp             CCCCCCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCSS
T ss_pred             CCCcccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCC
Confidence            3788999999999999999999999999999999855444

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=2.3e-12  Score=71.00  Aligned_cols=43  Identities=26%  Similarity=0.515  Sum_probs=40.0

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      +|+++|++++||.|++||+.|.+.+.|.+|+++|++++++.+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2em5_A            2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCSCSEECSSSCCEESSHHHHHHHHTTTSCSCCSSCC
T ss_pred             CCcCCCCCCCCeECCcCCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            5888999999999999999999999999999999999987664

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=1.5e-12  Score=71.68  Aligned_cols=43  Identities=26%  Similarity=0.365  Sum_probs=40.0

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      .|+++|++++||.|++||++|.+.+.|.+|+++|+++++..+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emh_A            2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSC
T ss_pred             CCCCCCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCC
Confidence            5888999999999999999999999999999999999987664

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=1.5e-12  Score=71.65  Aligned_cols=43  Identities=21%  Similarity=0.334  Sum_probs=40.0

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      .|+++|++++||.|++||++|.+.+.|.+|+++|++++++.+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emp_A            2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPS   44 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSCCSCC
T ss_pred             CcccccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCC
Confidence            5888999999999999999999999999999999999987664

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=1.7e-12  Score=71.37  Aligned_cols=43  Identities=23%  Similarity=0.356  Sum_probs=40.0

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      .|+++|++++||.|++|++.|.+.+.|.+|+++|+++++..+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2eq4_A            2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPS   44 (46)
T ss_dssp             CCCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCC
T ss_pred             CCcccCCCCCCeECCCCCCccCchHHHHHHHHhcCCCCCCCCC
Confidence            5888999999999999999999999999999999999987664

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=2.1e-12  Score=71.03  Aligned_cols=43  Identities=26%  Similarity=0.352  Sum_probs=40.0

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      .|+++|++++||.|++|+++|.+.+.|.+|+++|+++++..+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytf_A            2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            5888999999999999999999999999999999999987664

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.30  E-value=2e-12  Score=71.19  Aligned_cols=43  Identities=23%  Similarity=0.385  Sum_probs=40.0

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      .|+++|++++||.|++|+++|.+.+.|.+|+++|+++++..+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ely_A            2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCC
T ss_pred             CCCCCCCCCCCcccCccCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            5888999999999999999999999999999999999987664

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=2.1e-12  Score=70.44  Aligned_cols=39  Identities=28%  Similarity=0.307  Sum_probs=35.4

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRL   56 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~   56 (162)
                      .|+++|+++++|.|++|++.|.....|..|+++|+++++
T Consensus         2 ~h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (44)
T 2eou_A            2 SSGSSGAAKTTSECQECGKIFRHSSLLIEHQALHAGESG   40 (44)
T ss_dssp             CCSCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCC
Confidence            588999999999999999999999999999999984443

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=2e-12  Score=71.18  Aligned_cols=43  Identities=21%  Similarity=0.335  Sum_probs=40.0

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      .|+++|++++||.|++|++.|.+...|.+|+++|++++++.+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq1_A            2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCC
T ss_pred             CcccccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            5888999999999999999999999999999999999987664

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=1.8e-12  Score=71.36  Aligned_cols=43  Identities=23%  Similarity=0.403  Sum_probs=40.0

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      .|+++|++++||.|++|++.|.+.+.|.+|+++|+++++..+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2em3_A            2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCSC
T ss_pred             CCCCCCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            5888999999999999999999999999999999999987664

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=2.2e-12  Score=71.03  Aligned_cols=43  Identities=28%  Similarity=0.456  Sum_probs=39.9

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      .|+++|++++||.|++|++.|.+...|.+|+++|++++++.+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em6_A            2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTT
T ss_pred             CCccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            5788999999999999999999999999999999999987664

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=9.6e-13  Score=71.79  Aligned_cols=39  Identities=18%  Similarity=0.412  Sum_probs=35.7

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRL   56 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~   56 (162)
                      .|+++|+++++|.|++|++.|.....|..|+++|++++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~   40 (44)
T 2eox_A            2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSG   40 (44)
T ss_dssp             CCCCCCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCC
T ss_pred             CCCcCCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCC
Confidence            689999999999999999999999999999999984443

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=1.8e-12  Score=71.34  Aligned_cols=43  Identities=28%  Similarity=0.438  Sum_probs=39.9

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      .|+++|++++||.|++|++.|.+.+.|.+|+++|++++++.+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emm_A            2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSS
T ss_pred             CCcCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            5888999999999999999999999999999999999987664

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=2.5e-12  Score=70.73  Aligned_cols=43  Identities=26%  Similarity=0.391  Sum_probs=39.9

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      .|+++|++++||.|++|++.|.+...|.+|+++|+++++..+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yrj_A            2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSC
T ss_pred             CCccCCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            5888999999999999999999999999999999999987664

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=1.9e-12  Score=71.30  Aligned_cols=43  Identities=21%  Similarity=0.346  Sum_probs=39.9

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      .|+++|++++||.|++|++.|.+.+.|.+|+++|+++++..+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yti_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTT
T ss_pred             CCCcCCCCCcCeECCCCCcccCChhHHHHHhHhcCCCCCCCCC
Confidence            5888999999999999999999999999999999999987654

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=2.6e-12  Score=70.13  Aligned_cols=40  Identities=20%  Similarity=0.279  Sum_probs=36.7

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLT   57 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~   57 (162)
                      .|+++|+++++|.|++|++.|.....|..|+++|++++||
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   41 (44)
T 2epv_A            2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGP   41 (44)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSCC
T ss_pred             CCCcccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCCC
Confidence            6899999999999999999999999999999999855554

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=1.3e-12  Score=70.58  Aligned_cols=39  Identities=21%  Similarity=0.445  Sum_probs=35.3

Q ss_pred             cccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCC
Q 040287           19 SVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLT   57 (162)
Q Consensus        19 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~   57 (162)
                      |+++|+++++|.|++|++.|.....|..|+++|++++||
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   40 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS   40 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSST
T ss_pred             CCcccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCCC
Confidence            788999999999999999999999999999999855444

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=1.8e-12  Score=70.54  Aligned_cols=42  Identities=21%  Similarity=0.254  Sum_probs=39.0

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGN  106 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~  106 (162)
                      .|+++|++++||.|++||+.|.+.+.|.+|+++|+++++..+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2en7_A            2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS   43 (44)
T ss_dssp             CSCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCC
T ss_pred             CCCcCCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCCCCC
Confidence            588899999999999999999999999999999999988654

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=1.8e-12  Score=70.70  Aligned_cols=42  Identities=19%  Similarity=0.288  Sum_probs=38.9

Q ss_pred             CccCCCCCCceecCCCccccccchhHhhhhccccccccCCCC
Q 040287           66 TQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        66 h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      |+++|++++||.|++||++|.+.+.|.+|+++|+++++..+.
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPS   42 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCSCSCC
T ss_pred             CCCCcCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            678899999999999999999999999999999999987664

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=2.4e-12  Score=70.89  Aligned_cols=44  Identities=30%  Similarity=0.385  Sum_probs=40.3

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCCc
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNEK  108 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~  108 (162)
                      .|+++|++++||.|++|+++|.+.+.|.+|+++|++++++.+..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytq_A            2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSS   45 (46)
T ss_dssp             CCSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCC
T ss_pred             CCCcCcCCCCCcCCCccChhhCChHHHHHHHHHhCCCCCCCCCC
Confidence            57889999999999999999999999999999999999876643

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=2.3e-12  Score=70.93  Aligned_cols=43  Identities=23%  Similarity=0.279  Sum_probs=40.0

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      .|+++|++++||.|++|++.|.+...|.+|+++|++++++.+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2emg_A            2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPS   44 (46)
T ss_dssp             CCCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            5888999999999999999999999999999999999987664

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=1.9e-12  Score=71.23  Aligned_cols=44  Identities=23%  Similarity=0.390  Sum_probs=40.4

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCCc
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNEK  108 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~  108 (162)
                      .|+++|++++||.|++|++.|.+.+.|.+|+++|++++++.+..
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2ytk_A            2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCCC
T ss_pred             CCcccCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCC
Confidence            58889999999999999999999999999999999999876643

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=2.3e-12  Score=70.93  Aligned_cols=43  Identities=23%  Similarity=0.373  Sum_probs=39.8

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      .|+++|++++||.|++|+++|.+...|.+|+++|++++++.+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2epz_A            2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSC
T ss_pred             CCCCCcCCCCCeECCCCCceeCCHHHHHHHHHHhCCCCCCCCC
Confidence            4788999999999999999999999999999999999987664

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=2e-12  Score=71.10  Aligned_cols=43  Identities=21%  Similarity=0.362  Sum_probs=40.0

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      .|+++|++++||.|++|++.|.+.+.|.+|+++|++++++.+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eow_A            2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCTT
T ss_pred             CccCCCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCCCCCC
Confidence            5888999999999999999999999999999999999987664

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=2.3e-12  Score=70.89  Aligned_cols=43  Identities=28%  Similarity=0.382  Sum_probs=39.9

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      .|+++|++++||.|++|++.|.+...|.+|+++|+++++..+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ep1_A            2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPS   44 (46)
T ss_dssp             CCCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSS
T ss_pred             ccccCCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            5888999999999999999999999999999999999987654

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=1.5e-12  Score=70.20  Aligned_cols=41  Identities=20%  Similarity=0.361  Sum_probs=37.9

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHG  105 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~  105 (162)
                      .|+++|++++||.|++|+++|.+.+.|.+|+++|+++++..
T Consensus         1 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   41 (42)
T 2en2_A            1 GSSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSS   41 (42)
T ss_dssp             CCCCCCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCSSC
T ss_pred             CCCcccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCCC
Confidence            37788999999999999999999999999999999998854

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=2.1e-12  Score=71.07  Aligned_cols=43  Identities=23%  Similarity=0.354  Sum_probs=39.9

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      +|+++|++++||.|++||++|.+.+.|.+|+++|+++++..+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2eov_A            2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPS   44 (46)
T ss_dssp             CCCCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSC
T ss_pred             CCCCCCCCCCCccCCccChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            5888999999999999999999999999999999999987654

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=1.6e-12  Score=71.60  Aligned_cols=43  Identities=28%  Similarity=0.556  Sum_probs=39.9

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      +|+++|++++||.|++|++.|.+.+.|.+|+++|+++++..+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2eoz_A            2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS   44 (46)
T ss_dssp             CSCCCCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSCC
T ss_pred             CccccCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            5888999999999999999999999999999999999987654

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=2.1e-12  Score=70.43  Aligned_cols=42  Identities=19%  Similarity=0.300  Sum_probs=39.0

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGN  106 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~  106 (162)
                      .|+++|++++||.|++|+++|.+...|.+|+++|++++++.+
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eox_A            2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS   43 (44)
T ss_dssp             CCCCCCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCCCSC
T ss_pred             CCCcCCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            588899999999999999999999999999999999988654

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=2e-12  Score=69.75  Aligned_cols=40  Identities=25%  Similarity=0.463  Sum_probs=37.4

Q ss_pred             CccCCCCCCceecCCCccccccchhHhhhhccccccccCC
Q 040287           66 TQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHG  105 (162)
Q Consensus        66 h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~  105 (162)
                      |+++|++++||.|++|+++|.+.+.|.+|+++|+++++..
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   41 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSS   41 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTT
T ss_pred             CCcccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCCCC
Confidence            7788999999999999999999999999999999998854

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=2e-12  Score=71.07  Aligned_cols=43  Identities=23%  Similarity=0.406  Sum_probs=39.9

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      .|+++|++++||.|++||++|.+.+.|.+|+++|+++++..+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2ytr_A            2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CSSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSC
T ss_pred             CCCcCCCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCC
Confidence            5888999999999999999999999999999999999987664

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=2.8e-12  Score=71.08  Aligned_cols=45  Identities=24%  Similarity=0.375  Sum_probs=40.9

Q ss_pred             ccccccCCCceeecC--ccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCC
Q 040287           18 NSVDMTAAGRVFECK--TCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVC   81 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~--~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C   81 (162)
                      .|.++|+++++|.|.  +|++.|.....|..|+++|+                   +++||.|.+|
T Consensus         2 ~~~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~-------------------~~k~~~C~~C   48 (48)
T 2ent_A            2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHS-------------------GVKPSGPSSG   48 (48)
T ss_dssp             CCCCSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSC-------------------CCCSCSSCCC
T ss_pred             CCCCCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhC-------------------CCCCCCCCCC
Confidence            577899999999998  89999999999999999987                   6778888876

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=3.2e-12  Score=70.39  Aligned_cols=43  Identities=26%  Similarity=0.398  Sum_probs=39.6

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      .|+++|++++||.|++|++.|.+...|.+|+++|++++++.+.
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enh_A            2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCC
T ss_pred             CCCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            4778899999999999999999999999999999999987664

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=2.6e-12  Score=70.82  Aligned_cols=43  Identities=23%  Similarity=0.407  Sum_probs=39.7

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      .|+++|++++||.|++|++.|.+...|.+|+++|++++++.+.
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eon_A            2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS   44 (46)
T ss_dssp             CCSSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTS
T ss_pred             CCCCCCCCCcccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCC
Confidence            4788899999999999999999999999999999999987664

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=2.3e-12  Score=70.95  Aligned_cols=43  Identities=26%  Similarity=0.394  Sum_probs=40.1

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      .|+++|++++||.|++|++.|.+.+.|.+|+++|+++++..+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2ytd_A            2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSS
T ss_pred             CCccccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCC
Confidence            5888999999999999999999999999999999999987664

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=2e-12  Score=71.14  Aligned_cols=43  Identities=23%  Similarity=0.482  Sum_probs=39.8

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      .|+++|++++||.|++|++.|.+...|.+|+++|+++++..+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             ccccccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            5888999999999999999999999999999999999987654

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=2.7e-12  Score=70.64  Aligned_cols=43  Identities=19%  Similarity=0.314  Sum_probs=40.0

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      .|+++|++++||.|++|+++|.+.+.|.+|+++|+++++..+.
T Consensus         2 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2ysp_A            2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPS   44 (46)
T ss_dssp             CCCCCCSSCCSEEETTTTEEESCHHHHHHHHTTSCSCCSSCCS
T ss_pred             CCCcCCCCCCCeECCCCCCccCCHHHHHHHHHhhCCCCCCCCC
Confidence            5888999999999999999999999999999999999987664

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.28  E-value=3.5e-12  Score=70.21  Aligned_cols=43  Identities=26%  Similarity=0.254  Sum_probs=39.7

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      .|+++|++++||.|++|++.|.+...|.+|+++|++++++.+.
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2el6_A            2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPS   44 (46)
T ss_dssp             CSCCSSCCCCSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            4788899999999999999999999999999999999987664

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.27  E-value=2.5e-12  Score=69.28  Aligned_cols=40  Identities=20%  Similarity=0.292  Sum_probs=37.4

Q ss_pred             CccCCCCCCceecCCCccccccchhHhhhhccccccccCC
Q 040287           66 TQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHG  105 (162)
Q Consensus        66 h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~  105 (162)
                      |+++|++++||.|++||++|.+.+.|.+|+++|++++++.
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~   41 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS   41 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCCC
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCCC
Confidence            6788999999999999999999999999999999998864

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.27  E-value=3.4e-13  Score=84.57  Aligned_cols=51  Identities=25%  Similarity=0.402  Sum_probs=47.1

Q ss_pred             cchhhhhcCCCCCCccccccccCCCceeecCccCCccCChhHHHHHH-HhcCCC
Q 040287            2 ANCLMFMSQGGHFDAVNSVDMTAAGRVFECKTCNRQFPSFQALGGHR-ASHKKP   54 (162)
Q Consensus         2 a~C~k~f~~~~~l~~~~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~-~~h~~~   54 (162)
                      ..||+.|.+...|.  .|+++|++++||.|++|++.|.....|.+|+ +.|+++
T Consensus        32 ~~Cgk~F~~~~~L~--~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~E   83 (85)
T 2lv2_A           32 PVCGESFASKGAQE--RHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSE   83 (85)
T ss_dssp             TTSCCEESSHHHHH--HHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTTCTTC
T ss_pred             CCCCCCcCcHHHHh--hhhhhccCCCccCCCCCCCEeCCHHHHHHhCcccCcCC
Confidence            47999999999999  9999999999999999999999999999997 568754

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=2.5e-12  Score=70.77  Aligned_cols=43  Identities=23%  Similarity=0.418  Sum_probs=40.0

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      .|+++|++++||.|++|+++|.+.+.|.+|+++|++++++.+.
T Consensus         2 ~h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2en6_A            2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS   44 (46)
T ss_dssp             CCSCCCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSC
T ss_pred             CCCCccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCCCCCC
Confidence            5888999999999999999999999999999999999987664

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.27  E-value=3.7e-12  Score=70.09  Aligned_cols=43  Identities=23%  Similarity=0.357  Sum_probs=39.3

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccc-cccCCCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRA-VALHGNE  107 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~-~~~~~~~  107 (162)
                      .|+++|++++||.|++|+++|.+.+.|.+|+++|++ ++++.+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~   45 (46)
T 2eoy_A            2 SSGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSS   45 (46)
T ss_dssp             CCCCCCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSC
T ss_pred             CCccccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCC
Confidence            478899999999999999999999999999999999 8886653

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=2.9e-12  Score=70.47  Aligned_cols=43  Identities=23%  Similarity=0.426  Sum_probs=39.8

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      .|+++|++++||.|++|++.|.+.+.|.+|+++|++++++.+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq3_A            2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS   44 (46)
T ss_dssp             CCCCSSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCCCCSC
T ss_pred             CcccCCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            5888999999999999999999999999999999999987654

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.27  E-value=3.3e-12  Score=70.25  Aligned_cols=43  Identities=21%  Similarity=0.363  Sum_probs=39.8

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      .|+++|++++||.|++|+++|.+.+.|.+|+++|+++++..+.
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2enc_A            2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS   44 (46)
T ss_dssp             CCSSCCCCCCSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSC
T ss_pred             CCCCCCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCC
Confidence            5788999999999999999999999999999999999987654

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.27  E-value=3e-12  Score=70.42  Aligned_cols=43  Identities=23%  Similarity=0.331  Sum_probs=39.9

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      .|+++|++++||.|++||++|.+.+.|.+|+++|++++++.+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yso_A            2 SSGSSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPS   44 (46)
T ss_dssp             CCSCCSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTT
T ss_pred             CcccccCCCCCEEccccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            5788999999999999999999999999999999999987664

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=3.3e-12  Score=70.32  Aligned_cols=43  Identities=23%  Similarity=0.439  Sum_probs=39.9

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      .|+++|++++||.|++|++.|.+...|.+|+++|++++++.+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em2_A            2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSCCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSS
T ss_pred             CCCCCCCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            5888999999999999999999999999999999999987664

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=2.6e-12  Score=70.64  Aligned_cols=43  Identities=23%  Similarity=0.382  Sum_probs=39.9

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      .|+++|++++||.|.+|++.|.+.+.|.+|+++|++++++.+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~   44 (46)
T 2eor_A            2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CSSSSSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSST
T ss_pred             CCCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCC
Confidence            5888999999999999999999999999999999999987664

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.26  E-value=5.8e-13  Score=76.08  Aligned_cols=44  Identities=11%  Similarity=0.228  Sum_probs=37.4

Q ss_pred             CCCCcCccCCCCCCceecCCCccccccchhHhhhhccccccccC
Q 040287           61 GGGADTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALH  104 (162)
Q Consensus        61 ~~l~~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~  104 (162)
                      ..|..|+++|++++||.|.+||+.|.+.+.|.+|+++|++++++
T Consensus        10 ~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   53 (54)
T 1yui_A           10 PGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPG   53 (54)
T ss_dssp             SCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHTTTSCC
T ss_pred             cchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhccCCCC
Confidence            34555555556899999999999999999999999999999874

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=3e-12  Score=70.49  Aligned_cols=43  Identities=23%  Similarity=0.353  Sum_probs=39.9

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      .|+++|++++||.|++|++.|.+...|.+|+++|++++++.+.
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2en9_A            2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            5788999999999999999999999999999999999987664

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.26  E-value=4.2e-12  Score=69.95  Aligned_cols=39  Identities=21%  Similarity=0.294  Sum_probs=34.5

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRL   56 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~   56 (162)
                      ..+++|+++++|.|++|++.|.....|..|+++|++++|
T Consensus         2 ~~~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~   40 (46)
T 2eom_A            2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKP   40 (46)
T ss_dssp             CCCCCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCC
Confidence            457889999999999999999999999999999984433

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=2.4e-12  Score=70.91  Aligned_cols=43  Identities=28%  Similarity=0.507  Sum_probs=39.9

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      .|+++|++++||.|++|++.|.+...|.+|+++|++++++.+.
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emz_A            2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS   44 (46)
T ss_dssp             CCCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSC
T ss_pred             CCCcCCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            5888999999999999999999999999999999999987664

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=3.2e-12  Score=70.02  Aligned_cols=37  Identities=24%  Similarity=0.427  Sum_probs=33.6

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKP   54 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~   54 (162)
                      .+.++|+++++|.|.+|++.|.....|..|+++|+++
T Consensus         2 s~~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~   38 (45)
T 2epu_A            2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGE   38 (45)
T ss_dssp             CCCCCCCSCCSEEETTTTEEESSHHHHHHHHTTTSSC
T ss_pred             CCCCCCCCCcCccCCCCCCccCChHHHHHHHHHhCCC
Confidence            4678899999999999999999999999999999733

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=2.8e-12  Score=70.66  Aligned_cols=43  Identities=21%  Similarity=0.340  Sum_probs=39.8

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      .|+++|++++||.|++|+++|.+.+.|.+|+++|++++++.+.
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2ytm_A            2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS   44 (46)
T ss_dssp             CSCCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCC
T ss_pred             CCCcCCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCC
Confidence            4788999999999999999999999999999999999987664

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=5.4e-12  Score=69.59  Aligned_cols=43  Identities=26%  Similarity=0.376  Sum_probs=39.8

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhc-cccccccCCCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMR-RHRAVALHGNE  107 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~-~H~~~~~~~~~  107 (162)
                      .|+++|++++||.|++|+++|.+.+.|.+|++ +|+++++..+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~   45 (47)
T 2epx_A            2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS   45 (47)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCC
T ss_pred             ccccccCCCCCEECCccCchhCChHHHHHHhHhhcCCCCCCCCC
Confidence            58889999999999999999999999999999 99999987654

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=4e-12  Score=69.96  Aligned_cols=43  Identities=23%  Similarity=0.363  Sum_probs=39.7

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      .|+++|++++||.|++|+++|.+...|.+|+++|++++++.+.
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2em8_A            2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS   44 (46)
T ss_dssp             CCCCCCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSC
T ss_pred             CCCCCCCCCCCeECcccCchhCCHHHHHHHHHHHcCCCCCCCC
Confidence            4788899999999999999999999999999999999987664

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.24  E-value=7.7e-13  Score=76.04  Aligned_cols=52  Identities=17%  Similarity=0.332  Sum_probs=48.5

Q ss_pred             cchhhhhcCCCCCCccccccccCCCceeecCccCCccCChhHHHHHHHhcCCCC
Q 040287            2 ANCLMFMSQGGHFDAVNSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPR   55 (162)
Q Consensus         2 a~C~k~f~~~~~l~~~~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~   55 (162)
                      ..|++.|.+...|.  .|+++|+++++|.|++|++.|.....|..|+++|++++
T Consensus         5 ~~C~~~f~~~~~l~--~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            5 EECGIRXKKPSMLK--KHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             TTTCCBCSSHHHHH--HHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CCCcCcCCCHHHHH--HHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            36999999999998  99999999999999999999999999999999998654

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.23  E-value=5.1e-12  Score=68.86  Aligned_cols=42  Identities=26%  Similarity=0.298  Sum_probs=38.7

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCC
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGN  106 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~  106 (162)
                      .|+++|++++||.|++|++.|.+.+.|.+|+++|++++++.+
T Consensus         2 ~h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (44)
T 2eou_A            2 SSGSSGAAKTTSECQECGKIFRHSSLLIEHQALHAGESGPSS   43 (44)
T ss_dssp             CCSCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCC
T ss_pred             CCCCCCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCC
Confidence            477889999999999999999999999999999999988654

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.22  E-value=8.7e-12  Score=67.68  Aligned_cols=34  Identities=18%  Similarity=0.383  Sum_probs=31.5

Q ss_pred             cccCCCceeecCccCCccCChhHHHHHHHhcCCC
Q 040287           21 DMTAAGRVFECKTCNRQFPSFQALGGHRASHKKP   54 (162)
Q Consensus        21 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~   54 (162)
                      ++|+++++|.|++|++.|.....|..|+++|+++
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~   36 (43)
T 2yrm_A            3 SGSSGNGAFFCNECDCRFSEEASLKRHTLQTHSD   36 (43)
T ss_dssp             SCCSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCT
T ss_pred             cCcCCCCCEECCCCCCeeCChHHHHHHHHhhCCC
Confidence            5789999999999999999999999999999843

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=99.22  E-value=6.4e-12  Score=65.73  Aligned_cols=37  Identities=22%  Similarity=0.436  Sum_probs=34.3

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhcccccc
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAV  101 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~  101 (162)
                      .|+++|++++||.|+.|++.|.+...|.+|+++|+++
T Consensus         1 ~H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   37 (37)
T 1p7a_A            1 GSTRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV   37 (37)
T ss_dssp             CCSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTCC
T ss_pred             CCCCcCCCCCCccCCCCCcccCcHHHHHHHHHHhccC
Confidence            3788899999999999999999999999999999874

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.22  E-value=1.6e-12  Score=80.68  Aligned_cols=62  Identities=18%  Similarity=0.275  Sum_probs=55.2

Q ss_pred             chhhhhcCCCCCCccccccccCCC----ceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceec
Q 040287            3 NCLMFMSQGGHFDAVNSVDMTAAG----RVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHEC   78 (162)
Q Consensus         3 ~C~k~f~~~~~l~~~~h~~~h~~~----k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C   78 (162)
                      .|++.|.....|.  .|+++|.++    ++|.|.+|++.|.....|..|+++|+                   +++++.|
T Consensus        20 ~C~~~f~~~~~l~--~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~-------------------~~~~~~~   78 (86)
T 1x6h_A           20 HCDKTFRQKQLLD--MHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCA-------------------GPDGVEG   78 (86)
T ss_dssp             SSSCEESSHHHHH--HHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCC-------------------CCCSCCC
T ss_pred             CCCCccCCHHHHH--HHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHcc-------------------CCCCccc
Confidence            6999999999998  999876655    79999999999999999999999997                   7778899


Q ss_pred             CCCcccc
Q 040287           79 SVCGLEF   85 (162)
Q Consensus        79 ~~C~k~F   85 (162)
                      ..|+.+|
T Consensus        79 ~~~~~~~   85 (86)
T 1x6h_A           79 ENSGPSS   85 (86)
T ss_dssp             CCCCCCC
T ss_pred             CCCCCCC
Confidence            9998765

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.21  E-value=9.1e-13  Score=79.09  Aligned_cols=54  Identities=15%  Similarity=0.215  Sum_probs=49.9

Q ss_pred             cchhhhhcCCCCCCccccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCC
Q 040287            2 ANCLMFMSQGGHFDAVNSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLT   57 (162)
Q Consensus         2 a~C~k~f~~~~~l~~~~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~   57 (162)
                      ..|++.|.....|.  .|+++|+++++|.|.+|++.|.....|..|++.|++++|.
T Consensus        13 ~~C~k~f~~~~~L~--~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p~   66 (70)
T 1x5w_A           13 SECSYSCSSKAALR--IHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSG   66 (70)
T ss_dssp             SSSSCEESSHHHHH--HHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHHHSSSCC
T ss_pred             CCCCcccCCHHHHH--HHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHhCCCCC
Confidence            36999999999998  9999999999999999999999999999999999877653

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=1e-11  Score=68.01  Aligned_cols=42  Identities=24%  Similarity=0.352  Sum_probs=38.1

Q ss_pred             CccCCCCCCceecCCCccccccchhHhhhhccccccccCCCC
Q 040287           66 TQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        66 h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      +.++|++++||.|.+|++.|.+...|.+|+++|++++++.+.
T Consensus         3 ~~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (45)
T 2epu_A            3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS   44 (45)
T ss_dssp             CCCCCCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCCCCSC
T ss_pred             CCCCCCCCcCccCCCCCCccCChHHHHHHHHHhCCCCCCCCC
Confidence            567789999999999999999999999999999999987653

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.20  E-value=4.2e-12  Score=80.09  Aligned_cols=62  Identities=13%  Similarity=0.166  Sum_probs=52.5

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCCccccccchhHhhhhcc
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVCGLEFAIGQALGGHMRR   97 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~   97 (162)
                      .+.++|+++++|.|++|++.|.....|..|+++|+                   +++||.|..|.    ....|..|+++
T Consensus        15 ~~~~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht-------------------~ekp~~C~~~~----~~~~~~~~~~~   71 (88)
T 1x6f_A           15 LGNGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHN-------------------EEFQKRAKRQE----RRKQLLSKQKY   71 (88)
T ss_dssp             CCCCSCCCCSCEECSSSCCEESSHHHHHHHHHHHH-------------------HHHHHHCCCCS----CCCCCCCCCCC
T ss_pred             ccccccCCCCCCcCCCCCCEeCCHHHHHHHHHHhC-------------------CCCCcccchhh----hHHHHHhhhcc
Confidence            44577999999999999999999999999999997                   77889997654    56778888888


Q ss_pred             ccccc
Q 040287           98 HRAVA  102 (162)
Q Consensus        98 H~~~~  102 (162)
                      |.+..
T Consensus        72 ~~~~~   76 (88)
T 1x6f_A           72 ADGAF   76 (88)
T ss_dssp             CCCSS
T ss_pred             ccccc
Confidence            87654

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.20  E-value=6.6e-12  Score=65.70  Aligned_cols=37  Identities=19%  Similarity=0.405  Sum_probs=33.9

Q ss_pred             ccCCCCCCceecCCCccccccchhHhhhhcccccccc
Q 040287           67 QQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVAL  103 (162)
Q Consensus        67 ~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~  103 (162)
                      +++|++++||.|.+|+++|.+.+.|.+|+++|++++|
T Consensus         1 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            1 GSSGSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCCCCCCCEETTTTEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCCCCCCcCCCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            3578899999999999999999999999999998864

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.19  E-value=1.5e-11  Score=65.87  Aligned_cols=37  Identities=24%  Similarity=0.477  Sum_probs=33.0

Q ss_pred             cccCCCceeecCccCCccCChhHHHHHHHhcCCCCCC
Q 040287           21 DMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLT   57 (162)
Q Consensus        21 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~   57 (162)
                      ++|+++++|.|++|++.|.....|..|+++|++++||
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   39 (41)
T 2ept_A            3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPS   39 (41)
T ss_dssp             SSCCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSCS
T ss_pred             CccCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCc
Confidence            5789999999999999999999999999999855444

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.18  E-value=1.9e-11  Score=65.44  Aligned_cols=38  Identities=26%  Similarity=0.395  Sum_probs=35.2

Q ss_pred             cCCCCCCceecCCCccccccchhHhhhhccccccccCC
Q 040287           68 QSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHG  105 (162)
Q Consensus        68 ~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~  105 (162)
                      ++|++++||.|++|+++|.+...|..|+++|++++++.
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   40 (41)
T 2ept_A            3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSS   40 (41)
T ss_dssp             SSCCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSCSC
T ss_pred             CccCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcC
Confidence            46889999999999999999999999999999998854

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.18  E-value=1.3e-12  Score=82.82  Aligned_cols=51  Identities=22%  Similarity=0.251  Sum_probs=46.7

Q ss_pred             chhhhhcCCCCCCccccccc-cCCCce--------eecCccCCccCChhHHHHHHHhcCCCC
Q 040287            3 NCLMFMSQGGHFDAVNSVDM-TAAGRV--------FECKTCNRQFPSFQALGGHRASHKKPR   55 (162)
Q Consensus         3 ~C~k~f~~~~~l~~~~h~~~-h~~~k~--------~~C~~C~k~f~~~~~L~~H~~~h~~~~   55 (162)
                      .|++.|.....|.  .|+++ |+++++        |.|.+|++.|.....|..|+++|++++
T Consensus        30 ~C~k~f~~~~~L~--~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k   89 (95)
T 2ej4_A           30 SCDRTFSTMHELV--THVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEK   89 (95)
T ss_dssp             CCCCCCSSHHHHH--HHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCC
T ss_pred             ccccccCCHHHHH--HHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCC
Confidence            6999999999998  99998 999888        999999999999999999999998433

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.17  E-value=2.2e-13  Score=88.50  Aligned_cols=73  Identities=12%  Similarity=0.002  Sum_probs=62.9

Q ss_pred             cchhhhhcCCCCCCccccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCC---------CCCcCcc-CCC
Q 040287            2 ANCLMFMSQGGHFDAVNSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTG---------GGADTQQ-SPA   71 (162)
Q Consensus         2 a~C~k~f~~~~~l~~~~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~---------~l~~h~~-~h~   71 (162)
                      ..|++.|.....|.  .|+++|  +++|.|.+|++.|.....|..|++ |+++++|.|..         .|..|++ +|.
T Consensus        20 ~~C~~~f~~~~~l~--~H~~~H--~~~~~C~~C~~~f~~~~~l~~H~~-H~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~   94 (107)
T 1wjp_A           20 RLCNAKLSSLLEQG--SHERLC--RNAAVCPYCSLRFFSPELKQEHES-KCEYKKLTCLECMRTFKSSFSIWRHQVEVHN   94 (107)
T ss_dssp             TTTCCBCSSHHHHH--HHHHHH--HHSBCCTTTCCCBSSHHHHHHHHH-HCSTGGGEEGGGTEECSSHHHHHHHHHHTSC
T ss_pred             CCCCCccCCHHHHH--HHHHHC--CCCccCCCCCCccCCHHHHHHHHH-cCCCCCccCccccchhCCHHHHHHHHHHHcC
Confidence            36999999988888  999998  479999999999999999999996 99999987432         4678996 999


Q ss_pred             CCCceecC
Q 040287           72 KPRTHECS   79 (162)
Q Consensus        72 ~~kp~~C~   79 (162)
                      ++++|.|.
T Consensus        95 ~~~~~~~~  102 (107)
T 1wjp_A           95 QNNMAPTS  102 (107)
T ss_dssp             CCCCCCCC
T ss_pred             CCCCCCCC
Confidence            99999875

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=2.3e-11  Score=66.81  Aligned_cols=42  Identities=26%  Similarity=0.426  Sum_probs=38.4

Q ss_pred             CccCCCCCCceecCCCccccccchhHhhhhccccccccCCCC
Q 040287           66 TQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        66 h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      ++++|++++||.|++|++.|.+...|.+|+++|++++++.+.
T Consensus         3 ~~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ep0_A            3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCSSTTCCSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCC
T ss_pred             CCCCCCCCCCeeCcccCcccCChHHHHHHHHHhCCCCCCCCC
Confidence            467889999999999999999999999999999999987664

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.17  E-value=1.6e-11  Score=67.57  Aligned_cols=42  Identities=29%  Similarity=0.371  Sum_probs=38.3

Q ss_pred             CccCCCCCCceecCCCccccccchhHhhhhccccccccCCCC
Q 040287           66 TQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        66 h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      .+++|++++||.|++|++.|.+...|.+|+++|++++++.+.
T Consensus         3 ~~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eom_A            3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCC
T ss_pred             CCCCCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCCC
Confidence            457788999999999999999999999999999999997664

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=99.15  E-value=2.3e-11  Score=62.71  Aligned_cols=35  Identities=17%  Similarity=0.358  Sum_probs=32.3

Q ss_pred             CCCCCCceecCCCccccccchhHhhhhcccccccc
Q 040287           69 SPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVAL  103 (162)
Q Consensus        69 ~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~  103 (162)
                      +|++++||.|.+|++.|.+.+.|.+|+++|++++|
T Consensus         1 ~H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~   35 (35)
T 1srk_A            1 GSSGKRPFVCRICLSAFTTKANCARHLKVHTDTLS   35 (35)
T ss_dssp             CCSCCSCEECSSSCCEESSHHHHHHHHGGGTSCCC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            46799999999999999999999999999998764

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.14  E-value=2.2e-12  Score=74.13  Aligned_cols=49  Identities=14%  Similarity=0.298  Sum_probs=46.3

Q ss_pred             cchhhhhcCCCCCCccccccccCCCceeecCccCCccCChhHHHHHHHhcC
Q 040287            2 ANCLMFMSQGGHFDAVNSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHK   52 (162)
Q Consensus         2 a~C~k~f~~~~~l~~~~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~   52 (162)
                      ..|++.|.....|.  .|+++|+++++|.|++|++.|.....|..|++.|+
T Consensus         8 ~~C~~~f~~~~~l~--~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh   56 (57)
T 3uk3_C            8 SYCGKFFRSNYYLN--IHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH   56 (57)
T ss_dssp             TTTCCBCSCHHHHH--HHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHHC
T ss_pred             CCCcchhCChHHHH--HHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHhc
Confidence            36999999999998  99999999999999999999999999999999886

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.14  E-value=2.3e-11  Score=62.66  Aligned_cols=35  Identities=20%  Similarity=0.350  Sum_probs=32.2

Q ss_pred             CCCCCCceecCCCccccccchhHhhhhcccccccc
Q 040287           69 SPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVAL  103 (162)
Q Consensus        69 ~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~  103 (162)
                      +|++++||.|.+|++.|.+.+.|.+|+++|++++|
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~kp   35 (35)
T 2elx_A            1 GSSGSSGYVCALCLKKFVSSIRLRSHIREVHGAAQ   35 (35)
T ss_dssp             CCCCCCSEECSSSCCEESSHHHHHHHHHHTSCTTC
T ss_pred             CCCCCCCeECCCCcchhCCHHHHHHHHHHHcCCCC
Confidence            46799999999999999999999999999998764

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.14  E-value=2.9e-12  Score=77.33  Aligned_cols=52  Identities=15%  Similarity=0.338  Sum_probs=48.3

Q ss_pred             cchhhhhcCCCCCCccccccccCCCceeecCccCCccCChhHHHHHHHhcCCCC
Q 040287            2 ANCLMFMSQGGHFDAVNSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPR   55 (162)
Q Consensus         2 a~C~k~f~~~~~l~~~~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~   55 (162)
                      ..|++.|.+...|.  .|+++|.++++|.|.+|++.|.....|..|+++|+++.
T Consensus        18 ~~C~k~f~~~~~L~--~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~   69 (72)
T 1x6e_A           18 VECGKAFSRSSILV--QHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGP   69 (72)
T ss_dssp             SSSCCEESSHHHHH--HHHHGGGCSCCEECSSSCCEESSHHHHHHHHHHHHSSS
T ss_pred             CCCCCccCCHHHHH--HHHHhcCCCCCeECCCCCcccCCHHHHHHHHHhcCCCC
Confidence            36999999999999  99999999999999999999999999999999998654

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=2.4e-11  Score=66.75  Aligned_cols=42  Identities=24%  Similarity=0.337  Sum_probs=38.3

Q ss_pred             CccCCCCCCceecCCCccccccchhHhhhhccccccccCCCC
Q 040287           66 TQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        66 h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      .+++|++++||.|++|+++|.+...|.+|+++|++++++.+.
T Consensus         3 ~~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytt_A            3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPS   44 (46)
T ss_dssp             CSSSCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCC
T ss_pred             CCCCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            356789999999999999999999999999999999987664

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.12  E-value=3e-11  Score=65.46  Aligned_cols=40  Identities=13%  Similarity=0.193  Sum_probs=36.5

Q ss_pred             cCCCCCCceecCCCccccccchhHhhhhccccccccCCCC
Q 040287           68 QSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        68 ~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      ++|++++||.|..|++.|.+.+.|.+|+++|+++++..+.
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   42 (43)
T 2yrm_A            3 SGSSGNGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPSS   42 (43)
T ss_dssp             SCCSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSSC
T ss_pred             cCcCCCCCEECCCCCCeeCChHHHHHHHHhhCCCCCccCC
Confidence            4688999999999999999999999999999999987653

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.12  E-value=6e-12  Score=80.57  Aligned_cols=49  Identities=18%  Similarity=0.386  Sum_probs=46.0

Q ss_pred             chhhhh-cCCCCCCccccccccCCCceeecCccCCccCChhHHHHH-HHhcCCC
Q 040287            3 NCLMFM-SQGGHFDAVNSVDMTAAGRVFECKTCNRQFPSFQALGGH-RASHKKP   54 (162)
Q Consensus         3 ~C~k~f-~~~~~l~~~~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H-~~~h~~~   54 (162)
                      .|++.| .....|.  .|+++| ++++|.|.+|++.|.....|..| +++|+++
T Consensus        39 ~C~k~F~~~~~~L~--~H~~~h-~~k~~~C~~Cgk~F~~~~~L~~H~~~~H~~~   89 (96)
T 2ctd_A           39 TCQAVGRKTIEGLK--KHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHNSL   89 (96)
T ss_dssp             TTCSCEESSHHHHH--HHHHHH-CCCCCCCSSSCCCCSSHHHHHHHHHHHTCCC
T ss_pred             CCCCCcccCHHHHH--HHHHHH-CCCCeECCCCCCeeCCHHHHHHHhHHhcCCC
Confidence            699999 9999999  999999 99999999999999999999999 8999753

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=99.10  E-value=6.3e-11  Score=61.82  Aligned_cols=37  Identities=27%  Similarity=0.464  Sum_probs=34.4

Q ss_pred             ccccccCCCceeecCccCCccCChhHHHHHHHhcCCC
Q 040287           18 NSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKP   54 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~   54 (162)
                      .|+++|++++||.|++|++.|.....|..|+++|+++
T Consensus         1 ~H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   37 (37)
T 1p7a_A            1 GSTRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV   37 (37)
T ss_dssp             CCSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTCC
T ss_pred             CCCCcCCCCCCccCCCCCcccCcHHHHHHHHHHhccC
Confidence            4789999999999999999999999999999999753

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.10  E-value=2.4e-12  Score=82.53  Aligned_cols=54  Identities=17%  Similarity=0.377  Sum_probs=50.1

Q ss_pred             chhhhhc-CCCCCCccccccccCC-CceeecCccCCccCChhHHHHHHHhcCCCCCCC
Q 040287            3 NCLMFMS-QGGHFDAVNSVDMTAA-GRVFECKTCNRQFPSFQALGGHRASHKKPRLTD   58 (162)
Q Consensus         3 ~C~k~f~-~~~~l~~~~h~~~h~~-~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~   58 (162)
                      .|++.|. ....|.  .|+++|.+ +++|.|.+|++.|.....|..|++.|++++|..
T Consensus        29 ~C~k~f~~~~~~L~--~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~kp~~   84 (98)
T 2gqj_A           29 TCNVVTRKTLVGLK--KHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKPSD   84 (98)
T ss_dssp             TTCCCCSSCSHHHH--HHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHHHHHSCSCSSC
T ss_pred             CCCCChhhhHHHHH--HHHHHHcCCCCCEECCCCCCccCCHHHHHHHHHHHcCCCCCC
Confidence            6999999 989998  99999999 999999999999999999999999999877653

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.10  E-value=5.3e-11  Score=62.13  Aligned_cols=37  Identities=16%  Similarity=0.411  Sum_probs=33.9

Q ss_pred             ccccCCCceeecCccCCccCChhHHHHHHHhcCCCCC
Q 040287           20 VDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRL   56 (162)
Q Consensus        20 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~   56 (162)
                      +++|+++++|.|.+|++.|.....|..|+++|++++|
T Consensus         1 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            1 GSSGSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCCCCCCCEETTTTEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCCCCCCcCCCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            4689999999999999999999999999999997654

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.10  E-value=7.7e-12  Score=72.56  Aligned_cols=51  Identities=20%  Similarity=0.361  Sum_probs=46.7

Q ss_pred             cchhhhhcCCCCCCccccccccCCCceeecCccCCccCChhHHHHHH-HhcCCC
Q 040287            2 ANCLMFMSQGGHFDAVNSVDMTAAGRVFECKTCNRQFPSFQALGGHR-ASHKKP   54 (162)
Q Consensus         2 a~C~k~f~~~~~l~~~~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~-~~h~~~   54 (162)
                      ..|++.|.+...|.  .|+++|+++++|.|++|++.|.+...|..|+ +.|.++
T Consensus         6 ~~C~~~f~~~~~l~--~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~   57 (60)
T 2adr_A            6 EVCTRAFARQEHLK--RHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN   57 (60)
T ss_dssp             TTTCCCBSCHHHHH--HHHHTTTSSCSEECTTTCCEESSHHHHHHHHTTTSCCS
T ss_pred             CCCccccCCHHHHH--HHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHHcCCc
Confidence            36999999999999  9999999999999999999999999999997 678754

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.08  E-value=6e-11  Score=64.81  Aligned_cols=41  Identities=22%  Similarity=0.454  Sum_probs=37.2

Q ss_pred             cCCCCCCceecCCCccccccchhHhhhhccccccccCCCCc
Q 040287           68 QSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNEK  108 (162)
Q Consensus        68 ~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~  108 (162)
                      .+|++++||.|.+|++.|.+.+.|.+|+++|+++++..+..
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~   43 (45)
T 2epq_A            3 SGSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPS   43 (45)
T ss_dssp             CCCSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CCcCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcC
Confidence            46789999999999999999999999999999999876654

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.08  E-value=4.5e-11  Score=63.43  Aligned_cols=33  Identities=21%  Similarity=0.341  Sum_probs=30.4

Q ss_pred             CCCCCCceecCC--CccccccchhHhhhhcccccc
Q 040287           69 SPAKPRTHECSV--CGLEFAIGQALGGHMRRHRAV  101 (162)
Q Consensus        69 ~h~~~kp~~C~~--C~k~F~~~~~L~~H~~~H~~~  101 (162)
                      .+++++||.|++  |+++|.+++.|.+|+++|+++
T Consensus         3 ~~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            3 SGSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             CSSCCCCEECSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            467999999986  999999999999999999976

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=1.2e-10  Score=64.36  Aligned_cols=43  Identities=26%  Similarity=0.488  Sum_probs=38.9

Q ss_pred             cCccCCCCCCceecC--CCccccccchhHhhhhccccccccCCCC
Q 040287           65 DTQQSPAKPRTHECS--VCGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~--~C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      .|.++|++++||.|.  .|++.|.+...|.+|+++|++++++.+.
T Consensus         2 ~~~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   46 (48)
T 2ent_A            2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS   46 (48)
T ss_dssp             CCCCSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSC
T ss_pred             CCCCCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            366789999999998  8999999999999999999999987664

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=99.06  E-value=7.8e-11  Score=62.33  Aligned_cols=36  Identities=44%  Similarity=0.663  Sum_probs=32.8

Q ss_pred             CCCCCceecCCCccccccchhHhhhhccccccccCC
Q 040287           70 PAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHG  105 (162)
Q Consensus        70 h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~  105 (162)
                      |++++||.|.+||+.|.+.+.|..|+++|+++++..
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   36 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARL   36 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHHTTCCSCTTT
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHHHcCCCccce
Confidence            568999999999999999999999999999998854

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.06  E-value=8.9e-11  Score=60.88  Aligned_cols=35  Identities=20%  Similarity=0.240  Sum_probs=31.8

Q ss_pred             cCCCCCCceecCCCccccccchhHhhhhccccccc
Q 040287           68 QSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVA  102 (162)
Q Consensus        68 ~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~  102 (162)
                      +.|++++||.|.+|++.|.+.+.|.+|+++|++++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elv_A            2 SSGSSGLLYDCHICERKFKNELDRDRHMLVHGDKW   36 (36)
T ss_dssp             CCSCCCCCEECSSSCCEESSHHHHHHHHTTTSTTC
T ss_pred             CCCCCCCCeECCCCCCccCCHHHHHHHHHHhcCCC
Confidence            35779999999999999999999999999998764

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.05  E-value=7.7e-11  Score=61.51  Aligned_cols=35  Identities=26%  Similarity=0.477  Sum_probs=32.1

Q ss_pred             cCCCCCCceecCCCccccccc-hhHhhhhccccccc
Q 040287           68 QSPAKPRTHECSVCGLEFAIG-QALGGHMRRHRAVA  102 (162)
Q Consensus        68 ~~h~~~kp~~C~~C~k~F~~~-~~L~~H~~~H~~~~  102 (162)
                      ++|++++||.|+.|++.|.+. +.|.+|+++|++++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~k   37 (37)
T 2elp_A            2 SSGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGVK   37 (37)
T ss_dssp             CSCCCCCCEECSSSSCEECSSCHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCeECCCCChhhccCHHHHHHHHHhcCCCC
Confidence            467899999999999999999 99999999998764

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.05  E-value=7.5e-12  Score=75.51  Aligned_cols=48  Identities=21%  Similarity=0.499  Sum_probs=45.7

Q ss_pred             chhhhhcCCCCCCccccccccCCCceeecCccCCccCChhHHHHHHHhcC
Q 040287            3 NCLMFMSQGGHFDAVNSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHK   52 (162)
Q Consensus         3 ~C~k~f~~~~~l~~~~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~   52 (162)
                      .|++.|.....|.  .|+++|.++++|.|++|++.|.....|..|+++|+
T Consensus        26 ~C~k~f~~~~~l~--~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G           26 SCDRRFSRSDELT--RHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             TBCCEESSHHHHH--HHHHHHHCCCCEECTTTCCEESCHHHHHHHHTTCC
T ss_pred             CCCCccCCHHHHH--HHHHhhCCCCCeECCCCCchhCCHHHHHHHHHhcC
Confidence            6999999999998  99999999999999999999999999999999884

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.04  E-value=7.4e-11  Score=61.78  Aligned_cols=35  Identities=20%  Similarity=0.339  Sum_probs=31.8

Q ss_pred             ccCCCCCCceecCCCccccccchhHhhh-hcccccc
Q 040287           67 QQSPAKPRTHECSVCGLEFAIGQALGGH-MRRHRAV  101 (162)
Q Consensus        67 ~~~h~~~kp~~C~~C~k~F~~~~~L~~H-~~~H~~~  101 (162)
                      +++|++++||.|+.|+++|.+.+.|.+| +++|+++
T Consensus         1 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A            1 GSSGSSGHLYYCSQCHYSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             CCSSSSSCEEECSSSSCEEECHHHHHHHHHHHTCCC
T ss_pred             CCccCCCcCeECCCCCcccCCHHHHHHHHHHHccCc
Confidence            3578899999999999999999999999 8999865

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=99.04  E-value=7.1e-11  Score=65.69  Aligned_cols=36  Identities=19%  Similarity=0.375  Sum_probs=30.0

Q ss_pred             CCCCCCceecCCCccccccchhHhhhhc-cccccccC
Q 040287           69 SPAKPRTHECSVCGLEFAIGQALGGHMR-RHRAVALH  104 (162)
Q Consensus        69 ~h~~~kp~~C~~C~k~F~~~~~L~~H~~-~H~~~~~~  104 (162)
                      +|++++||.|.+||++|.+..+|.+|++ +|+++...
T Consensus         1 ~Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e~~~   37 (48)
T 3iuf_A            1 GEDRDKPYACDICGKRYKNRPGLSYHYAHSHLAEEEG   37 (48)
T ss_dssp             -CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC----
T ss_pred             CCCCCcCEECCCcCcccCCHHHHHHHhhhhcCCCCCC
Confidence            4789999999999999999999999999 99988764

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.03  E-value=2.3e-10  Score=58.72  Aligned_cols=35  Identities=17%  Similarity=0.254  Sum_probs=32.0

Q ss_pred             ccCCCceeecCccCCccCChhHHHHHHHhcCCCCC
Q 040287           22 MTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRL   56 (162)
Q Consensus        22 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~   56 (162)
                      +|+++++|.|.+|++.|.....|..|+++|++++|
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~kp   35 (35)
T 2elx_A            1 GSSGSSGYVCALCLKKFVSSIRLRSHIREVHGAAQ   35 (35)
T ss_dssp             CCCCCCSEECSSSCCEESSHHHHHHHHHHTSCTTC
T ss_pred             CCCCCCCeECCCCcchhCCHHHHHHHHHHHcCCCC
Confidence            47899999999999999999999999999987654

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.03  E-value=1.2e-10  Score=60.45  Aligned_cols=35  Identities=26%  Similarity=0.453  Sum_probs=31.9

Q ss_pred             cCCCCCCceecCCCccccccchhHhhhhccccccc
Q 040287           68 QSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVA  102 (162)
Q Consensus        68 ~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~  102 (162)
                      .+|++++||.|.+|++.|.+.+.|.+|+++|++++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elq_A            2 SSGSSGKPFKCSLCEYATRSKSNLKAHMNRHSTEK   36 (36)
T ss_dssp             CSSCCCCSEECSSSSCEESCHHHHHHHHHHSSTTC
T ss_pred             CCCCCCCCccCCCCCchhCCHHHHHHHHHHhccCC
Confidence            35789999999999999999999999999998764

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.03  E-value=1.1e-10  Score=60.36  Aligned_cols=34  Identities=26%  Similarity=0.468  Sum_probs=31.6

Q ss_pred             CCCCCCceecCCCccccccchhHhhhhccccccc
Q 040287           69 SPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVA  102 (162)
Q Consensus        69 ~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~  102 (162)
                      +|++++||.|.+|++.|.....|.+|+++|++++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elt_A            3 SGSSGKPYKCPQCSYASAIKANLNVHLRKHTGEK   36 (36)
T ss_dssp             CSCCCCSEECSSSSCEESSHHHHHHHHHHHTCCC
T ss_pred             CCCCCCCCCCCCCCcccCCHHHHHHHHHHccCCC
Confidence            5789999999999999999999999999998764

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=99.02  E-value=2.8e-10  Score=58.53  Aligned_cols=35  Identities=20%  Similarity=0.342  Sum_probs=32.1

Q ss_pred             ccCCCceeecCccCCccCChhHHHHHHHhcCCCCC
Q 040287           22 MTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRL   56 (162)
Q Consensus        22 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~   56 (162)
                      +|+++++|.|.+|++.|.....|..|+++|++++|
T Consensus         1 ~H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~   35 (35)
T 1srk_A            1 GSSGKRPFVCRICLSAFTTKANCARHLKVHTDTLS   35 (35)
T ss_dssp             CCSCCSCEECSSSCCEESSHHHHHHHHGGGTSCCC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            57899999999999999999999999999987654

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=99.01  E-value=2.7e-10  Score=60.20  Aligned_cols=35  Identities=40%  Similarity=0.701  Sum_probs=31.2

Q ss_pred             cCCCceeecCccCCccCChhHHHHHHHhcCCCCCC
Q 040287           23 TAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLT   57 (162)
Q Consensus        23 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~   57 (162)
                      |+++++|.|++|++.|.....|..|+++|+++++|
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   35 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRAR   35 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHHTTCCSCTT
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHHHcCCCccc
Confidence            67899999999999999999999999999866665

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.01  E-value=4.5e-10  Score=73.36  Aligned_cols=51  Identities=22%  Similarity=0.256  Sum_probs=45.1

Q ss_pred             chhhhh--cCCCCCCccccccccCCCceeecCccCCccCChhHHHHHHHhcCCCC
Q 040287            3 NCLMFM--SQGGHFDAVNSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPR   55 (162)
Q Consensus         3 ~C~k~f--~~~~~l~~~~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~   55 (162)
                      .|++.|  .....|.  .|+++|+++++|.|++|++.|.....|..|++.|....
T Consensus        55 ~C~~~f~f~~~~~l~--~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~hh~~~  107 (115)
T 2dmi_A           55 NNPKRWSKPRKRSLL--EMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQ  107 (115)
T ss_dssp             CCCSCCSSCCCCCCC--CCCCSCCCCSSCBCSSSCCBCSSHHHHHHHHHHTTTTT
T ss_pred             CCCcccccccHHHHH--HHhhccCCCcceECCCCCCccCCHHHHHHHHHHhCCcc
Confidence            688888  7888888  99999999999999999999999999999999887543

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.01  E-value=2.8e-10  Score=67.83  Aligned_cols=39  Identities=23%  Similarity=0.187  Sum_probs=34.4

Q ss_pred             CCCCCceecCC--CccccccchhHhhhh-ccccccccCCCCc
Q 040287           70 PAKPRTHECSV--CGLEFAIGQALGGHM-RRHRAVALHGNEK  108 (162)
Q Consensus        70 h~~~kp~~C~~--C~k~F~~~~~L~~H~-~~H~~~~~~~~~~  108 (162)
                      .+|+|||+|.+  |+++|.+.++|.+|+ ++|++++|..+..
T Consensus        22 ~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~~   63 (73)
T 1x3c_A           22 YSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAE   63 (73)
T ss_dssp             SCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCCS
T ss_pred             ccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCccccc
Confidence            46999999975  999999999999998 6899999976544

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=98.99  E-value=3.6e-11  Score=71.04  Aligned_cols=50  Identities=16%  Similarity=0.279  Sum_probs=45.9

Q ss_pred             cchhhhhcCCCCCCccccccc-c-CCCceeecCccCCccCChhHHHHHHHhcCC
Q 040287            2 ANCLMFMSQGGHFDAVNSVDM-T-AAGRVFECKTCNRQFPSFQALGGHRASHKK   53 (162)
Q Consensus         2 a~C~k~f~~~~~l~~~~h~~~-h-~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~   53 (162)
                      ..|++.|.....|.  .|+++ | +++++|.|++|++.|.....|..|++.|++
T Consensus        14 ~~C~k~f~~~~~l~--~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A           14 KVCSRVYTHISNFC--RHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             TTTCCEESSHHHHH--HHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             CCCcchhCCHHHHH--HHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            36999999999998  99988 8 699999999999999999999999998864

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.98  E-value=1.9e-10  Score=59.51  Aligned_cols=34  Identities=32%  Similarity=0.511  Sum_probs=31.5

Q ss_pred             CCCCCCceecCCCccccccchhHhhhhccccccc
Q 040287           69 SPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVA  102 (162)
Q Consensus        69 ~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~  102 (162)
                      +|.+++||.|.+|++.|.+...|.+|+++|++++
T Consensus         3 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~ek   36 (36)
T 2elr_A            3 SGSSGKTHLCDMCGKKFKSKGTLKSHKLLHTADG   36 (36)
T ss_dssp             CCCCCSSCBCTTTCCBCSSHHHHHHHHHHHSSCC
T ss_pred             CCCCCCCeecCcCCCCcCchHHHHHHHHHhcCCC
Confidence            5779999999999999999999999999998864

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.97  E-value=4.3e-10  Score=62.26  Aligned_cols=41  Identities=20%  Similarity=0.236  Sum_probs=37.1

Q ss_pred             CCCCCCceecCCCccccccchhHhhhhccccccccCCCCcc
Q 040287           69 SPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNEKV  109 (162)
Q Consensus        69 ~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~  109 (162)
                      .|.++++|.|.+|++.|.+...|.+|+++|++++++.+..+
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (48)
T 2epr_A            6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS   46 (48)
T ss_dssp             CCCCCCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCC
Confidence            46789999999999999999999999999999999877654

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.96  E-value=5e-10  Score=58.48  Aligned_cols=35  Identities=17%  Similarity=0.332  Sum_probs=32.0

Q ss_pred             ccccCCCceeecCccCCccCChhHHHHH-HHhcCCC
Q 040287           20 VDMTAAGRVFECKTCNRQFPSFQALGGH-RASHKKP   54 (162)
Q Consensus        20 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H-~~~h~~~   54 (162)
                      +++|++++||.|++|++.|.....|..| ++.|+++
T Consensus         1 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A            1 GSSGSSGHLYYCSQCHYSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             CCSSSSSCEEECSSSSCEEECHHHHHHHHHHHTCCC
T ss_pred             CCccCCCcCeECCCCCcccCCHHHHHHHHHHHccCc
Confidence            4689999999999999999999999999 8999753

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.95  E-value=3.1e-10  Score=58.77  Aligned_cols=34  Identities=24%  Similarity=0.464  Sum_probs=31.2

Q ss_pred             CCCCCCceecCCCccccccchhHhhhhccccccc
Q 040287           69 SPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVA  102 (162)
Q Consensus        69 ~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~  102 (162)
                      .|.+++||.|++|++.|.....|..|+++|++++
T Consensus         3 ~~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2els_A            3 SGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK   36 (36)
T ss_dssp             TTSCCCCEECTTTCCEESSHHHHHHHHHHHCCCC
T ss_pred             CCCCCCCEECCCCCceeCCHHHHHHHHHHhCCCC
Confidence            4678999999999999999999999999998764

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.94  E-value=3.3e-10  Score=59.37  Aligned_cols=35  Identities=20%  Similarity=0.387  Sum_probs=32.1

Q ss_pred             CCCCCceecC--CCccccccchhHhhhhccccccccC
Q 040287           70 PAKPRTHECS--VCGLEFAIGQALGGHMRRHRAVALH  104 (162)
Q Consensus        70 h~~~kp~~C~--~C~k~F~~~~~L~~H~~~H~~~~~~  104 (162)
                      |++++||.|.  .|+++|.+.+.|.+|+++|+++++.
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            5689999999  5999999999999999999998874

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.93  E-value=5e-11  Score=72.79  Aligned_cols=52  Identities=23%  Similarity=0.372  Sum_probs=46.3

Q ss_pred             chhhhhcCCCCCCccccccccCC---CceeecCccCCccCChhHHHHHH-HhcCCCCC
Q 040287            3 NCLMFMSQGGHFDAVNSVDMTAA---GRVFECKTCNRQFPSFQALGGHR-ASHKKPRL   56 (162)
Q Consensus         3 ~C~k~f~~~~~l~~~~h~~~h~~---~k~~~C~~C~k~f~~~~~L~~H~-~~h~~~~~   56 (162)
                      .|++.|.....|.  .|+++|.+   +++|.|.+|++.|.....|..|+ +.|.++++
T Consensus        12 ~C~k~f~~~~~L~--~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~   67 (78)
T 2d9h_A           12 ICGFTCRQKASLN--WHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL   67 (78)
T ss_dssp             SSCCEESSHHHHH--HHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTTTSS
T ss_pred             CCCCeeCCHHHHH--HHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCCCCC
Confidence            6999999999999  99999996   89999999999999999999999 55665544

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.92  E-value=1.6e-10  Score=58.54  Aligned_cols=31  Identities=23%  Similarity=0.393  Sum_probs=29.2

Q ss_pred             CceecCCCccccccchhHhhhhccccccccC
Q 040287           74 RTHECSVCGLEFAIGQALGGHMRRHRAVALH  104 (162)
Q Consensus        74 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~  104 (162)
                      +||.|++||++|.+.+.|.+|+++|+++++.
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHccCCCC
Confidence            5899999999999999999999999999875

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.91  E-value=2.5e-11  Score=72.85  Aligned_cols=52  Identities=13%  Similarity=0.239  Sum_probs=43.2

Q ss_pred             cchhhhhcCCCCCCccccccccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCC
Q 040287            2 ANCLMFMSQGGHFDAVNSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVC   81 (162)
Q Consensus         2 a~C~k~f~~~~~l~~~~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C   81 (162)
                      ..|++.|.....|.  .       +++|.|++|++.|.....|..|+++|+                   +++||.|++|
T Consensus        22 ~~C~k~f~~~~~l~--~-------~~~~~C~~C~~~f~~~~~l~~H~~~H~-------------------~~~~~~C~~C   73 (73)
T 2ctu_A           22 SKCGIIFIRRSTLS--R-------RKTPMCEKCRKDSCQEAALNKDEGNES-------------------GKKTSGPSSG   73 (73)
T ss_dssp             SSSCCEEECCCCCC--C-------SSSCCCHHHHHTCSCCCSSCCCSSCCC-------------------CCCCSSCCCC
T ss_pred             CcccchhCCHHHhC--c-------CCCCCCCCCChhhcCHHHHHHHHHhhc-------------------CCCCCCCCCC
Confidence            36999999999998  3       789999999999998877666666554                   7888999887

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.91  E-value=2.4e-10  Score=63.17  Aligned_cols=40  Identities=20%  Similarity=0.296  Sum_probs=34.5

Q ss_pred             CCcCccCCCCCCceecC--CCccccccchhHhhhhccccccc
Q 040287           63 GADTQQSPAKPRTHECS--VCGLEFAIGQALGGHMRRHRAVA  102 (162)
Q Consensus        63 l~~h~~~h~~~kp~~C~--~C~k~F~~~~~L~~H~~~H~~~~  102 (162)
                      +..|...|++++||.|.  .||++|.+.+.|.+|+++|++++
T Consensus         6 ~~~~~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~ek   47 (47)
T 1ncs_A            6 SIDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             SGGGSCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             HHHHHhccCCCCCeECCCCCCCCccCCHHHHHHHHHHccCCC
Confidence            34455678899999996  69999999999999999999864

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.91  E-value=6.9e-10  Score=57.77  Aligned_cols=34  Identities=24%  Similarity=0.404  Sum_probs=31.6

Q ss_pred             cccCCCceeecCccCCccCCh-hHHHHHHHhcCCC
Q 040287           21 DMTAAGRVFECKTCNRQFPSF-QALGGHRASHKKP   54 (162)
Q Consensus        21 ~~h~~~k~~~C~~C~k~f~~~-~~L~~H~~~h~~~   54 (162)
                      ++|+++++|.|++|++.|... ..|..|+++|+++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~   36 (37)
T 2elp_A            2 SSGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGV   36 (37)
T ss_dssp             CSCCCCCCEECSSSSCEECSSCHHHHHHHHHHHTC
T ss_pred             CCCCCCCCeECCCCChhhccCHHHHHHHHHhcCCC
Confidence            578999999999999999999 9999999999865

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=98.91  E-value=6.1e-11  Score=71.27  Aligned_cols=47  Identities=23%  Similarity=0.506  Sum_probs=43.8

Q ss_pred             chhhhhcCCCCCCccccccccCCCceeecCc--cCCccCChhHHHHHHHhc
Q 040287            3 NCLMFMSQGGHFDAVNSVDMTAAGRVFECKT--CNRQFPSFQALGGHRASH   51 (162)
Q Consensus         3 ~C~k~f~~~~~l~~~~h~~~h~~~k~~~C~~--C~k~f~~~~~L~~H~~~h   51 (162)
                      .|++.|.....|.  .|+++|+++++|.|.+  |++.|.....|..|+++|
T Consensus        24 ~C~k~f~~~~~L~--~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           24 GCGKTYFKSSHLK--AHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             TTCCEESSHHHHH--HHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             CCccccCCHHHHH--HHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            4999999999998  9999999999999965  999999999999999876

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.90  E-value=1.2e-09  Score=56.51  Aligned_cols=34  Identities=21%  Similarity=0.487  Sum_probs=31.3

Q ss_pred             cccCCCceeecCccCCccCChhHHHHHHHhcCCC
Q 040287           21 DMTAAGRVFECKTCNRQFPSFQALGGHRASHKKP   54 (162)
Q Consensus        21 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~   54 (162)
                      +.|+++++|.|.+|++.|.....|..|+++|+++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elv_A            2 SSGSSGLLYDCHICERKFKNELDRDRHMLVHGDK   35 (36)
T ss_dssp             CCSCCCCCEECSSSCCEESSHHHHHHHHTTTSTT
T ss_pred             CCCCCCCCeECCCCCCccCCHHHHHHHHHHhcCC
Confidence            3688999999999999999999999999999865

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.89  E-value=1.6e-09  Score=56.00  Aligned_cols=34  Identities=24%  Similarity=0.444  Sum_probs=31.4

Q ss_pred             cccCCCceeecCccCCccCChhHHHHHHHhcCCC
Q 040287           21 DMTAAGRVFECKTCNRQFPSFQALGGHRASHKKP   54 (162)
Q Consensus        21 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~   54 (162)
                      +.|+++++|.|.+|++.|.....|..|+++|+++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elq_A            2 SSGSSGKPFKCSLCEYATRSKSNLKAHMNRHSTE   35 (36)
T ss_dssp             CSSCCCCSEECSSSSCEESCHHHHHHHHHHSSTT
T ss_pred             CCCCCCCCccCCCCCchhCCHHHHHHHHHHhccC
Confidence            4688999999999999999999999999999865

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.89  E-value=8.5e-11  Score=69.61  Aligned_cols=50  Identities=14%  Similarity=0.143  Sum_probs=45.3

Q ss_pred             chhhhhcCCCCCCccccccccCCCceeecC-ccCCccCChhHHHHHHHhcCCCCC
Q 040287            3 NCLMFMSQGGHFDAVNSVDMTAAGRVFECK-TCNRQFPSFQALGGHRASHKKPRL   56 (162)
Q Consensus         3 ~C~k~f~~~~~l~~~~h~~~h~~~k~~~C~-~C~k~f~~~~~L~~H~~~h~~~~~   56 (162)
                      .|++.|. ...|.  .|+++ ++++||.|+ +|++.|.....|..|+++|...++
T Consensus        15 ~C~k~f~-~~~L~--~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~~~~   65 (66)
T 2eod_A           15 YCTKEFV-FDTIQ--SHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKDSCNTAL   65 (66)
T ss_dssp             SSCCEEE-HHHHH--HHHHH-CSSSEEECTTCCSCCEEETTTHHHHHHTTSSSCC
T ss_pred             ccCCccC-HHHHH--HHHHH-cCCcCccCCcccCcccccHHHHHHHHHhhcccCc
Confidence            6999999 88888  99999 999999999 999999999999999999975543

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.89  E-value=1.4e-09  Score=57.58  Aligned_cols=33  Identities=24%  Similarity=0.447  Sum_probs=30.2

Q ss_pred             ccCCCceeecCc--cCCccCChhHHHHHHHhcCCC
Q 040287           22 MTAAGRVFECKT--CNRQFPSFQALGGHRASHKKP   54 (162)
Q Consensus        22 ~h~~~k~~~C~~--C~k~f~~~~~L~~H~~~h~~~   54 (162)
                      .+++++||+|++  |++.|..++.|.+|+++|+++
T Consensus         3 ~~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            3 SGSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             CSSCCCCEECSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            467899999986  999999999999999999865

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.89  E-value=1e-09  Score=66.70  Aligned_cols=50  Identities=16%  Similarity=0.311  Sum_probs=42.6

Q ss_pred             CCCcCccCCCCCCceecCCCccccccchhHhhhhc-ccccc-ccCCCCcccc
Q 040287           62 GGADTQQSPAKPRTHECSVCGLEFAIGQALGGHMR-RHRAV-ALHGNEKVST  111 (162)
Q Consensus        62 ~l~~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~-~H~~~-~~~~~~~~~~  111 (162)
                      .+..|+++|++++||.|++|++.|.+...|.+|++ .|.++ ++..+..+..
T Consensus         2 s~~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~   53 (77)
T 2ct1_A            2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDT   53 (77)
T ss_dssp             CCCCCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSC
T ss_pred             CCCccccccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCC
Confidence            35789999999999999999999999999999997 68765 7777666544

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.88  E-value=6.8e-10  Score=57.98  Aligned_cols=34  Identities=29%  Similarity=0.654  Sum_probs=30.8

Q ss_pred             CCCCCCceecCC--CccccccchhHhhhhccccccc
Q 040287           69 SPAKPRTHECSV--CGLEFAIGQALGGHMRRHRAVA  102 (162)
Q Consensus        69 ~h~~~kp~~C~~--C~k~F~~~~~L~~H~~~H~~~~  102 (162)
                      .|++++||.|.+  ||++|.+.+.|.+|+++|++++
T Consensus         2 ~~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~ek   37 (37)
T 1va1_A            2 DPGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER   37 (37)
T ss_dssp             CSSSCCCEECCSTTCCCEESCHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCCC
Confidence            367999999995  9999999999999999999864

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.88  E-value=6.4e-10  Score=56.65  Aligned_cols=31  Identities=19%  Similarity=0.381  Sum_probs=29.2

Q ss_pred             CceecCCCccccccchhHhhhhccccccccC
Q 040287           74 RTHECSVCGLEFAIGQALGGHMRRHRAVALH  104 (162)
Q Consensus        74 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~  104 (162)
                      +||.|++||+.|.+.+.|..|+++|+++++.
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~   31 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHELLGEE   31 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTTTCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCCCCCC
Confidence            5899999999999999999999999999874

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.88  E-value=1.8e-09  Score=55.67  Aligned_cols=34  Identities=18%  Similarity=0.355  Sum_probs=31.4

Q ss_pred             cccCCCceeecCccCCccCChhHHHHHHHhcCCC
Q 040287           21 DMTAAGRVFECKTCNRQFPSFQALGGHRASHKKP   54 (162)
Q Consensus        21 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~   54 (162)
                      .+|+++++|.|.+|++.|.....|..|+++|+++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elt_A            2 SSGSSGKPYKCPQCSYASAIKANLNVHLRKHTGE   35 (36)
T ss_dssp             CCSCCCCSEECSSSSCEESSHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCCCCCCCCcccCCHHHHHHHHHHccCC
Confidence            3688999999999999999999999999999865

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.87  E-value=2e-09  Score=64.13  Aligned_cols=37  Identities=27%  Similarity=0.230  Sum_probs=31.6

Q ss_pred             ccCCCceeecCc--cCCccCChhHHHHHH-HhcCCCCCCC
Q 040287           22 MTAAGRVFECKT--CNRQFPSFQALGGHR-ASHKKPRLTD   58 (162)
Q Consensus        22 ~h~~~k~~~C~~--C~k~f~~~~~L~~H~-~~h~~~~~~~   58 (162)
                      .++++|||+|..  |++.|.+.++|.+|+ ++|++++|+.
T Consensus        21 ~~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~   60 (73)
T 1x3c_A           21 RYSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAF   60 (73)
T ss_dssp             SSCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCC
T ss_pred             cccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCcc
Confidence            478999999975  999999999999997 6898666554

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.85  E-value=1.6e-09  Score=60.04  Aligned_cols=35  Identities=20%  Similarity=0.395  Sum_probs=30.0

Q ss_pred             ccCCCceeecCccCCccCChhHHHHHHH-hcCCCCC
Q 040287           22 MTAAGRVFECKTCNRQFPSFQALGGHRA-SHKKPRL   56 (162)
Q Consensus        22 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~-~h~~~~~   56 (162)
                      +|+++++|.|.+|++.|.....|..|++ +|+++..
T Consensus         1 ~Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e~~   36 (48)
T 3iuf_A            1 GEDRDKPYACDICGKRYKNRPGLSYHYAHSHLAEEE   36 (48)
T ss_dssp             -CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC---
T ss_pred             CCCCCcCEECCCcCcccCCHHHHHHHhhhhcCCCCC
Confidence            5899999999999999999999999999 9987644

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.84  E-value=1.4e-09  Score=63.66  Aligned_cols=48  Identities=13%  Similarity=0.088  Sum_probs=42.0

Q ss_pred             CCcCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCCcccccc
Q 040287           63 GADTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNEKVSTLT  113 (162)
Q Consensus        63 l~~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~  113 (162)
                      |..|+++|++++||.|+.||++|.+...|.   ++|++++++.+..+...-
T Consensus         2 L~~h~~~H~~~k~~~C~~C~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f   49 (62)
T 1vd4_A            2 IETDERDSTNRASFKCPVCSSTFTDLEANQ---LFDPMTGTFRCTFCHTEV   49 (62)
T ss_dssp             CCCCSSSCCSSSEEECSSSCCEEEHHHHHH---HEETTTTEEBCSSSCCBC
T ss_pred             hhhHHHHcCCCCCccCCCCCchhccHHHhH---hhcCCCCCEECCCCCCcc
Confidence            567899999999999999999999998886   889999998887766543

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.84  E-value=1.9e-09  Score=56.33  Aligned_cols=35  Identities=20%  Similarity=0.416  Sum_probs=31.9

Q ss_pred             cCCCceeecC--ccCCccCChhHHHHHHHhcCCCCCC
Q 040287           23 TAAGRVFECK--TCNRQFPSFQALGGHRASHKKPRLT   57 (162)
Q Consensus        23 h~~~k~~~C~--~C~k~f~~~~~L~~H~~~h~~~~~~   57 (162)
                      |+++++|.|.  .|++.|.....|..|+++|+++++|
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            6789999999  5999999999999999999977765

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.83  E-value=2.6e-09  Score=54.28  Aligned_cols=31  Identities=23%  Similarity=0.379  Sum_probs=28.5

Q ss_pred             ceeecCccCCccCChhHHHHHHHhcCCCCCC
Q 040287           27 RVFECKTCNRQFPSFQALGGHRASHKKPRLT   57 (162)
Q Consensus        27 k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~   57 (162)
                      +||.|++|++.|.....|..|+++|+++++|
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~   31 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHELLGEE   31 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTTTCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCCCCCC
Confidence            5899999999999999999999999977665

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.83  E-value=4.2e-09  Score=59.69  Aligned_cols=44  Identities=23%  Similarity=0.379  Sum_probs=38.8

Q ss_pred             cCCCCCCceecCCCccccccchhHhhhhc-cccccccCCCCcccc
Q 040287           68 QSPAKPRTHECSVCGLEFAIGQALGGHMR-RHRAVALHGNEKVST  111 (162)
Q Consensus        68 ~~h~~~kp~~C~~C~k~F~~~~~L~~H~~-~H~~~~~~~~~~~~~  111 (162)
                      ..|.+++||.|++|++.|.+...|.+|++ +|+++++..+..+..
T Consensus         5 ~~~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k   49 (54)
T 2eps_A            5 SSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVS   49 (54)
T ss_dssp             CCCCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCC
T ss_pred             CCCCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCC
Confidence            45778999999999999999999999997 999999988776543

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.82  E-value=3.1e-09  Score=54.75  Aligned_cols=33  Identities=24%  Similarity=0.528  Sum_probs=30.9

Q ss_pred             ccCCCceeecCccCCccCChhHHHHHHHhcCCC
Q 040287           22 MTAAGRVFECKTCNRQFPSFQALGGHRASHKKP   54 (162)
Q Consensus        22 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~   54 (162)
                      .|+++++|.|.+|++.|.....|..|+++|+++
T Consensus         3 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~e   35 (36)
T 2elr_A            3 SGSSGKTHLCDMCGKKFKSKGTLKSHKLLHTAD   35 (36)
T ss_dssp             CCCCCSSCBCTTTCCBCSSHHHHHHHHHHHSSC
T ss_pred             CCCCCCCeecCcCCCCcCchHHHHHHHHHhcCC
Confidence            578899999999999999999999999999865

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.82  E-value=3e-09  Score=63.19  Aligned_cols=36  Identities=22%  Similarity=0.413  Sum_probs=32.6

Q ss_pred             cCCCCCCceecCCCccccccchhHhhhhcccccccc
Q 040287           68 QSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVAL  103 (162)
Q Consensus        68 ~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~  103 (162)
                      ..+.+++||.|.+|+++|.+.+.|.+|+++|+++..
T Consensus         6 ~~~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~~   41 (66)
T 2epp_A            6 SGLREAGILPCGLCGKVFTDANRLRQHEAQHGVTSL   41 (66)
T ss_dssp             CSCCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTTSC
T ss_pred             CCCCCccCcCCCCCCCccCCHHHHHhhhhhhCCCcc
Confidence            346789999999999999999999999999998755

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.79  E-value=2.8e-09  Score=52.06  Aligned_cols=29  Identities=21%  Similarity=0.316  Sum_probs=26.9

Q ss_pred             CceecCCCccccccchhHhhhhccccccc
Q 040287           74 RTHECSVCGLEFAIGQALGGHMRRHRAVA  102 (162)
Q Consensus        74 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~  102 (162)
                      +||.|+.||+.|.+.+.|..|+++|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHENKK   29 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGGSCC
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcCCC
Confidence            58999999999999999999999998764

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.79  E-value=5.2e-09  Score=53.97  Aligned_cols=33  Identities=27%  Similarity=0.609  Sum_probs=30.6

Q ss_pred             ccCCCceeecCccCCccCChhHHHHHHHhcCCC
Q 040287           22 MTAAGRVFECKTCNRQFPSFQALGGHRASHKKP   54 (162)
Q Consensus        22 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~   54 (162)
                      .|+++++|.|++|++.|.....|..|+++|+++
T Consensus         3 ~~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2els_A            3 SGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNE   35 (36)
T ss_dssp             TTSCCCCEECTTTCCEESSHHHHHHHHHHHCCC
T ss_pred             CCCCCCCEECCCCCceeCCHHHHHHHHHHhCCC
Confidence            477899999999999999999999999999865

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.79  E-value=2.3e-09  Score=52.64  Aligned_cols=30  Identities=20%  Similarity=0.402  Sum_probs=27.7

Q ss_pred             CCceecCCCccccccchhHhhhhccccccc
Q 040287           73 PRTHECSVCGLEFAIGQALGGHMRRHRAVA  102 (162)
Q Consensus        73 ~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~  102 (162)
                      ++||.|..||++|.....|..|+++|++++
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~~k   30 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLETHDTDK   30 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHTTCCCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHHhccCC
Confidence            579999999999999999999999998764

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.79  E-value=3.2e-09  Score=58.47  Aligned_cols=38  Identities=21%  Similarity=0.440  Sum_probs=34.2

Q ss_pred             ccccccCCCceeecC--ccCCccCChhHHHHHHHhcCCCC
Q 040287           18 NSVDMTAAGRVFECK--TCNRQFPSFQALGGHRASHKKPR   55 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~--~C~k~f~~~~~L~~H~~~h~~~~   55 (162)
                      .|...|+++++|.|+  .|++.|.....|..|+++|++++
T Consensus         8 ~~~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~ek   47 (47)
T 1ncs_A            8 DKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             GGSCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             HHHhccCCCCCeECCCCCCCCccCCHHHHHHHHHHccCCC
Confidence            667789999999996  79999999999999999998653

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=98.78  E-value=6.3e-10  Score=74.20  Aligned_cols=49  Identities=20%  Similarity=0.356  Sum_probs=45.6

Q ss_pred             cchhhhhcCCCCCCccccccccCCCceeecCccCCccCChhHHHHHHHhcCCC
Q 040287            2 ANCLMFMSQGGHFDAVNSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKP   54 (162)
Q Consensus         2 a~C~k~f~~~~~l~~~~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~   54 (162)
                      ..||+.|.+...|.  .|+++|  ++||.|++|++.|.....|..|++.|++.
T Consensus        78 ~~C~k~f~~~~~l~--~H~~~H--~~~~~C~~C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           78 PLCLMPFSSSVSLK--QHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             TTTCCEESSHHHHH--HHHHHT--CCCCBCTTTCCBCSSHHHHHHHHHHTTCC
T ss_pred             CCCCcccCCHhHHH--HHHHHC--CCCCCCCCCCcccCCHHHHHHHHHHHCCc
Confidence            36999999999999  999999  89999999999999999999999999864

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.76  E-value=1.9e-09  Score=67.76  Aligned_cols=46  Identities=13%  Similarity=0.195  Sum_probs=40.6

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCCccc
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNEKVS  110 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~  110 (162)
                      .+.++|++++||.|++|++.|.+...|.+|+++|+++++..+....
T Consensus        15 ~~~~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~   60 (88)
T 1x6f_A           15 LGNGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQE   60 (88)
T ss_dssp             CCCCSCCCCSCEECSSSCCEESSHHHHHHHHHHHHHHHHHHCCCCS
T ss_pred             ccccccCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccchhh
Confidence            4456799999999999999999999999999999999998776543

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.74  E-value=1.8e-08  Score=59.85  Aligned_cols=36  Identities=22%  Similarity=0.417  Sum_probs=32.3

Q ss_pred             cccCCCceeecCccCCccCChhHHHHHHHhcCCCCC
Q 040287           21 DMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRL   56 (162)
Q Consensus        21 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~   56 (162)
                      ..+.+++||.|.+|++.|.....|..|+++|+++..
T Consensus         6 ~~~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~~   41 (66)
T 2epp_A            6 SGLREAGILPCGLCGKVFTDANRLRQHEAQHGVTSL   41 (66)
T ss_dssp             CSCCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTTSC
T ss_pred             CCCCCccCcCCCCCCCccCCHHHHHhhhhhhCCCcc
Confidence            457889999999999999999999999999997643

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.74  E-value=5.1e-09  Score=52.47  Aligned_cols=30  Identities=27%  Similarity=0.447  Sum_probs=27.6

Q ss_pred             CCceecC--CCccccccchhHhhhhccccccc
Q 040287           73 PRTHECS--VCGLEFAIGQALGGHMRRHRAVA  102 (162)
Q Consensus        73 ~kp~~C~--~C~k~F~~~~~L~~H~~~H~~~~  102 (162)
                      ++||.|.  .||++|.+.+.|.+|+++|++++
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~   32 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEKA   32 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCCC
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHHccCCC
Confidence            5799999  89999999999999999998764

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.74  E-value=3.3e-09  Score=51.22  Aligned_cols=27  Identities=22%  Similarity=0.452  Sum_probs=25.2

Q ss_pred             CCceecCCCccccccchhHhhhhcccc
Q 040287           73 PRTHECSVCGLEFAIGQALGGHMRRHR   99 (162)
Q Consensus        73 ~kp~~C~~C~k~F~~~~~L~~H~~~H~   99 (162)
                      ++||.|+.||++|.+.+.|.+|+++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGHS   27 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTCC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhcC
Confidence            579999999999999999999999884

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.74  E-value=4.1e-09  Score=51.09  Aligned_cols=28  Identities=36%  Similarity=0.719  Sum_probs=26.0

Q ss_pred             CCceecCCCccccccchhHhhhhccccc
Q 040287           73 PRTHECSVCGLEFAIGQALGGHMRRHRA  100 (162)
Q Consensus        73 ~kp~~C~~C~k~F~~~~~L~~H~~~H~~  100 (162)
                      ++||.|+.|++.|.+.+.|..|+++|++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~   28 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVHTG   28 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTSCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhcCC
Confidence            5799999999999999999999999874

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.72  E-value=4.7e-09  Score=50.54  Aligned_cols=27  Identities=26%  Similarity=0.442  Sum_probs=25.2

Q ss_pred             CCceecCCCccccccchhHhhhhcccc
Q 040287           73 PRTHECSVCGLEFAIGQALGGHMRRHR   99 (162)
Q Consensus        73 ~kp~~C~~C~k~F~~~~~L~~H~~~H~   99 (162)
                      ++||.|+.||++|.+.+.|..|+++|+
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHCC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHcc
Confidence            579999999999999999999999885

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.71  E-value=4e-09  Score=51.40  Aligned_cols=29  Identities=34%  Similarity=0.573  Sum_probs=26.7

Q ss_pred             CceecCCCccccccchhHhhhhccccccc
Q 040287           74 RTHECSVCGLEFAIGQALGGHMRRHRAVA  102 (162)
Q Consensus        74 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~  102 (162)
                      +||.|++||++|.+.+.|..|+++|++++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~k   29 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHSCCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhcCCC
Confidence            58999999999999999999999998763

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=98.18  E-value=1.5e-09  Score=53.47  Aligned_cols=30  Identities=30%  Similarity=0.393  Sum_probs=27.5

Q ss_pred             CCceecCCCccccccchhHhhhhccccccc
Q 040287           73 PRTHECSVCGLEFAIGQALGGHMRRHRAVA  102 (162)
Q Consensus        73 ~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~  102 (162)
                      ++||.|..||+.|.+.+.|..|+++|++++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~~k   30 (30)
T 2lvr_A            1 MKPYVCIHCQRQFADPGALQRHVRIHTGEK   30 (30)
Confidence            479999999999999999999999998763

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.71  E-value=8.4e-09  Score=53.65  Aligned_cols=34  Identities=18%  Similarity=0.320  Sum_probs=30.5

Q ss_pred             ccCCCceeecCc--cCCccCChhHHHHHHHhcCCCC
Q 040287           22 MTAAGRVFECKT--CNRQFPSFQALGGHRASHKKPR   55 (162)
Q Consensus        22 ~h~~~k~~~C~~--C~k~f~~~~~L~~H~~~h~~~~   55 (162)
                      .|+++++|.|.+  |++.|...+.|..|+++|++++
T Consensus         2 ~~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~ek   37 (37)
T 1va1_A            2 DPGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER   37 (37)
T ss_dssp             CSSSCCCEECCSTTCCCEESCHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCCC
Confidence            478999999995  9999999999999999998653

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.70  E-value=4.5e-09  Score=51.11  Aligned_cols=29  Identities=28%  Similarity=0.537  Sum_probs=26.9

Q ss_pred             CceecCCCccccccchhHhhhhccccccc
Q 040287           74 RTHECSVCGLEFAIGQALGGHMRRHRAVA  102 (162)
Q Consensus        74 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~  102 (162)
                      +||.|+.|+++|.+...|..|+++|++++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~   29 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHIADG   29 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHHSCC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhccCC
Confidence            58999999999999999999999998764

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=98.16  E-value=1.7e-09  Score=52.95  Aligned_cols=29  Identities=28%  Similarity=0.651  Sum_probs=26.8

Q ss_pred             CceecCCCccccccchhHhhhhccccccc
Q 040287           74 RTHECSVCGLEFAIGQALGGHMRRHRAVA  102 (162)
Q Consensus        74 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~  102 (162)
                      +||.|++||++|.+.+.|..|+++|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK   29 (29)
Confidence            58999999999999999999999998764

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.69  E-value=4.6e-09  Score=51.14  Aligned_cols=29  Identities=28%  Similarity=0.559  Sum_probs=26.9

Q ss_pred             CceecCCCccccccchhHhhhhccccccc
Q 040287           74 RTHECSVCGLEFAIGQALGGHMRRHRAVA  102 (162)
Q Consensus        74 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~  102 (162)
                      +||.|.+|++.|.....|..|+++|++++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHSGEK   29 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHHTCC
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhcCCC
Confidence            58999999999999999999999998764

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.69  E-value=6.5e-09  Score=51.71  Aligned_cols=29  Identities=31%  Similarity=0.605  Sum_probs=26.7

Q ss_pred             CceecC--CCccccccchhHhhhhccccccc
Q 040287           74 RTHECS--VCGLEFAIGQALGGHMRRHRAVA  102 (162)
Q Consensus        74 kp~~C~--~C~k~F~~~~~L~~H~~~H~~~~  102 (162)
                      +||.|+  .||++|.+.+.|..|+++|++++
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~~~k   31 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhcCCC
Confidence            589998  89999999999999999999864

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.68  E-value=6.6e-09  Score=50.90  Aligned_cols=30  Identities=20%  Similarity=0.399  Sum_probs=27.4

Q ss_pred             CceecCCCccccccchhHhhhhcccccccc
Q 040287           74 RTHECSVCGLEFAIGQALGGHMRRHRAVAL  103 (162)
Q Consensus        74 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~  103 (162)
                      +||.|.+||+.|...+.|..|+++|+++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~~~~~   30 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK   30 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSCC
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHccCCC
Confidence            589999999999999999999999987753

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.68  E-value=8.1e-09  Score=53.86  Aligned_cols=27  Identities=30%  Similarity=0.575  Sum_probs=25.1

Q ss_pred             CCCCCceecCCCccccccchhHhhhhc
Q 040287           70 PAKPRTHECSVCGLEFAIGQALGGHMR   96 (162)
Q Consensus        70 h~~~kp~~C~~C~k~F~~~~~L~~H~~   96 (162)
                      +.+||||.|++||++|.+.++|.+|+.
T Consensus         3 ~~gekp~~C~~CgK~F~~~s~L~~H~p   29 (36)
T 1fv5_A            3 LLKPARFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             SSSCCCCEETTTTEECSCHHHHHHHHH
T ss_pred             CCCccCeECCCCCCccCCHhHccCcCC
Confidence            468999999999999999999999983

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.65  E-value=1e-08  Score=49.15  Aligned_cols=27  Identities=30%  Similarity=0.537  Sum_probs=24.1

Q ss_pred             ceecCCCccccccchhHhhhhcccccc
Q 040287           75 THECSVCGLEFAIGQALGGHMRRHRAV  101 (162)
Q Consensus        75 p~~C~~C~k~F~~~~~L~~H~~~H~~~  101 (162)
                      ||.|..||+.|.+.+.|.+|+++|+++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~~   27 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKNX   27 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC-
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCCC
Confidence            689999999999999999999999864

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.63  E-value=1.4e-08  Score=49.81  Aligned_cols=29  Identities=21%  Similarity=0.405  Sum_probs=26.5

Q ss_pred             CceecCCCccccccchhHhhh-hccccccc
Q 040287           74 RTHECSVCGLEFAIGQALGGH-MRRHRAVA  102 (162)
Q Consensus        74 kp~~C~~C~k~F~~~~~L~~H-~~~H~~~~  102 (162)
                      +||.|+.||+.|.+.+.|..| +++|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~   30 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHSGNL   30 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSCCCC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHccCCC
Confidence            589999999999999999999 78998764

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.62  E-value=3.1e-08  Score=48.38  Aligned_cols=29  Identities=21%  Similarity=0.471  Sum_probs=26.9

Q ss_pred             CceeecCccCCccCChhHHHHHHHhcCCC
Q 040287           26 GRVFECKTCNRQFPSFQALGGHRASHKKP   54 (162)
Q Consensus        26 ~k~~~C~~C~k~f~~~~~L~~H~~~h~~~   54 (162)
                      +++|.|..|++.|.....|..|+++|+++
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~~   29 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLETHDTD   29 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHTTCCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHHhccC
Confidence            57999999999999999999999999865

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.58  E-value=1.7e-09  Score=54.55  Aligned_cols=31  Identities=23%  Similarity=0.345  Sum_probs=27.1

Q ss_pred             ceeecCccCCccCChhHHHHHHHhcCCCCCC
Q 040287           27 RVFECKTCNRQFPSFQALGGHRASHKKPRLT   57 (162)
Q Consensus        27 k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~   57 (162)
                      +||.|++|++.|...+.|..|+++|++++|+
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHccCCCC
Confidence            5899999999999999999999888876664

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=98.00  E-value=6.4e-09  Score=49.57  Aligned_cols=26  Identities=31%  Similarity=0.703  Sum_probs=24.3

Q ss_pred             CceecCCCccccccchhHhhhhcccc
Q 040287           74 RTHECSVCGLEFAIGQALGGHMRRHR   99 (162)
Q Consensus        74 kp~~C~~C~k~F~~~~~L~~H~~~H~   99 (162)
                      +||.|+.||++|.+.+.|..|+++|+
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H~   26 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHHD   26 (26)
Confidence            58999999999999999999999884

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.55  E-value=5.4e-08  Score=46.60  Aligned_cols=27  Identities=26%  Similarity=0.591  Sum_probs=25.2

Q ss_pred             CceeecCccCCccCChhHHHHHHHhcC
Q 040287           26 GRVFECKTCNRQFPSFQALGGHRASHK   52 (162)
Q Consensus        26 ~k~~~C~~C~k~f~~~~~L~~H~~~h~   52 (162)
                      ++||.|.+|++.|.....|..|+++|+
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHCC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHcc
Confidence            579999999999999999999999884

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.54  E-value=5.7e-08  Score=47.08  Aligned_cols=28  Identities=36%  Similarity=0.685  Sum_probs=26.0

Q ss_pred             ceeecCccCCccCChhHHHHHHHhcCCC
Q 040287           27 RVFECKTCNRQFPSFQALGGHRASHKKP   54 (162)
Q Consensus        27 k~~~C~~C~k~f~~~~~L~~H~~~h~~~   54 (162)
                      ++|.|++|++.|.....|..|+++|+++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHSCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhcCC
Confidence            5799999999999999999999999865

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.54  E-value=4.1e-08  Score=47.66  Aligned_cols=28  Identities=25%  Similarity=0.441  Sum_probs=26.1

Q ss_pred             ceeecCccCCccCChhHHHHHHHhcCCC
Q 040287           27 RVFECKTCNRQFPSFQALGGHRASHKKP   54 (162)
Q Consensus        27 k~~~C~~C~k~f~~~~~L~~H~~~h~~~   54 (162)
                      +||.|++|++.|.....|..|+++|+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHENK   28 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGGSC
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcCC
Confidence            5899999999999999999999999865

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.54  E-value=4.9e-08  Score=47.08  Aligned_cols=28  Identities=21%  Similarity=0.523  Sum_probs=25.8

Q ss_pred             CceeecCccCCccCChhHHHHHHHhcCC
Q 040287           26 GRVFECKTCNRQFPSFQALGGHRASHKK   53 (162)
Q Consensus        26 ~k~~~C~~C~k~f~~~~~L~~H~~~h~~   53 (162)
                      +++|.|.+|++.|.....|..|+++|++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~   28 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVHTG   28 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTSCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhcCC
Confidence            5789999999999999999999999863

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.52  E-value=6.8e-08  Score=48.15  Aligned_cols=29  Identities=28%  Similarity=0.636  Sum_probs=26.8

Q ss_pred             CceeecC--ccCCccCChhHHHHHHHhcCCC
Q 040287           26 GRVFECK--TCNRQFPSFQALGGHRASHKKP   54 (162)
Q Consensus        26 ~k~~~C~--~C~k~f~~~~~L~~H~~~h~~~   54 (162)
                      ++||.|.  .|++.|.....|..|+++|+++
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~H~~~   31 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHHccCC
Confidence            5799999  8999999999999999999865

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.50  E-value=3.9e-08  Score=47.25  Aligned_cols=27  Identities=22%  Similarity=0.591  Sum_probs=25.0

Q ss_pred             CceeecCccCCccCChhHHHHHHHhcC
Q 040287           26 GRVFECKTCNRQFPSFQALGGHRASHK   52 (162)
Q Consensus        26 ~k~~~C~~C~k~f~~~~~L~~H~~~h~   52 (162)
                      ++||.|++|++.|.....|..|+++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGHS   27 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTCC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhcC
Confidence            479999999999999999999999874

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.48  E-value=6.7e-08  Score=46.77  Aligned_cols=28  Identities=25%  Similarity=0.526  Sum_probs=26.0

Q ss_pred             ceeecCccCCccCChhHHHHHHHhcCCC
Q 040287           27 RVFECKTCNRQFPSFQALGGHRASHKKP   54 (162)
Q Consensus        27 k~~~C~~C~k~f~~~~~L~~H~~~h~~~   54 (162)
                      ++|.|.+|++.|.....|..|+++|+++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHSGE   28 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHHTC
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhcCC
Confidence            5899999999999999999999999865

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.48  E-value=8.9e-08  Score=46.62  Aligned_cols=29  Identities=14%  Similarity=0.392  Sum_probs=26.5

Q ss_pred             ceeecCccCCccCChhHHHHHHHhcCCCC
Q 040287           27 RVFECKTCNRQFPSFQALGGHRASHKKPR   55 (162)
Q Consensus        27 k~~~C~~C~k~f~~~~~L~~H~~~h~~~~   55 (162)
                      ++|.|.+|++.|.....|..|+++|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~~~~   29 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHccCC
Confidence            47999999999999999999999998654

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.47  E-value=1.2e-07  Score=49.39  Aligned_cols=27  Identities=30%  Similarity=0.456  Sum_probs=24.9

Q ss_pred             cCCCceeecCccCCccCChhHHHHHHH
Q 040287           23 TAAGRVFECKTCNRQFPSFQALGGHRA   49 (162)
Q Consensus        23 h~~~k~~~C~~C~k~f~~~~~L~~H~~   49 (162)
                      +.+|+||.|++|+|+|.++++|.+|+.
T Consensus         3 ~~gekp~~C~~CgK~F~~~s~L~~H~p   29 (36)
T 1fv5_A            3 LLKPARFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             SSSCCCCEETTTTEECSCHHHHHHHHH
T ss_pred             CCCccCeECCCCCCccCCHhHccCcCC
Confidence            468999999999999999999999983

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.46  E-value=1e-07  Score=47.15  Aligned_cols=28  Identities=29%  Similarity=0.653  Sum_probs=25.9

Q ss_pred             ceeecC--ccCCccCChhHHHHHHHhcCCC
Q 040287           27 RVFECK--TCNRQFPSFQALGGHRASHKKP   54 (162)
Q Consensus        27 k~~~C~--~C~k~f~~~~~L~~H~~~h~~~   54 (162)
                      +||.|+  .|++.|.....|..|+++|+++
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~~~   30 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhcCC
Confidence            589998  9999999999999999999865

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.81  E-value=2.4e-08  Score=48.87  Aligned_cols=29  Identities=31%  Similarity=0.493  Sum_probs=26.5

Q ss_pred             CceeecCccCCccCChhHHHHHHHhcCCC
Q 040287           26 GRVFECKTCNRQFPSFQALGGHRASHKKP   54 (162)
Q Consensus        26 ~k~~~C~~C~k~f~~~~~L~~H~~~h~~~   54 (162)
                      ++||.|..|++.|.....|..|+++|+++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~~   29 (30)
T 2lvr_A            1 MKPYVCIHCQRQFADPGALQRHVRIHTGE   29 (30)
Confidence            47899999999999999999999999764

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.43  E-value=8.3e-08  Score=46.35  Aligned_cols=28  Identities=21%  Similarity=0.516  Sum_probs=25.9

Q ss_pred             ceeecCccCCccCChhHHHHHHHhcCCC
Q 040287           27 RVFECKTCNRQFPSFQALGGHRASHKKP   54 (162)
Q Consensus        27 k~~~C~~C~k~f~~~~~L~~H~~~h~~~   54 (162)
                      +||.|.+|++.|.....|..|+++|+++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHIAD   28 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHHSC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhccC
Confidence            5899999999999999999999999865

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.81  E-value=2.5e-08  Score=48.57  Aligned_cols=28  Identities=21%  Similarity=0.475  Sum_probs=25.7

Q ss_pred             ceeecCccCCccCChhHHHHHHHhcCCC
Q 040287           27 RVFECKTCNRQFPSFQALGGHRASHKKP   54 (162)
Q Consensus        27 k~~~C~~C~k~f~~~~~L~~H~~~h~~~   54 (162)
                      +||.|.+|++.|.....|..|+++|+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQHTGE   28 (29)
Confidence            5899999999999999999999999864

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=98.42  E-value=9.8e-08  Score=46.20  Aligned_cols=27  Identities=26%  Similarity=0.458  Sum_probs=25.1

Q ss_pred             CceecC--CCccccccchhHhhhhccccc
Q 040287           74 RTHECS--VCGLEFAIGQALGGHMRRHRA  100 (162)
Q Consensus        74 kp~~C~--~C~k~F~~~~~L~~H~~~H~~  100 (162)
                      +||.|.  .||+.|.+.+.|..|+++|++
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~~   29 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHTG   29 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGTC
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhCC
Confidence            589999  999999999999999999974

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.42  E-value=1.5e-07  Score=44.80  Aligned_cols=26  Identities=35%  Similarity=0.730  Sum_probs=23.8

Q ss_pred             eeecCccCCccCChhHHHHHHHhcCC
Q 040287           28 VFECKTCNRQFPSFQALGGHRASHKK   53 (162)
Q Consensus        28 ~~~C~~C~k~f~~~~~L~~H~~~h~~   53 (162)
                      ||.|.+|++.|.....|..|+++|++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~   26 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKN   26 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCC
Confidence            68999999999999999999999975

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.36  E-value=1.8e-07  Score=45.63  Aligned_cols=28  Identities=29%  Similarity=0.573  Sum_probs=25.4

Q ss_pred             ceeecCccCCccCChhHHHHH-HHhcCCC
Q 040287           27 RVFECKTCNRQFPSFQALGGH-RASHKKP   54 (162)
Q Consensus        27 k~~~C~~C~k~f~~~~~L~~H-~~~h~~~   54 (162)
                      +||.|..|++.|.....|..| +++|+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~~~   29 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHSGN   29 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSCCC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHccCC
Confidence            579999999999999999999 7889865

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.65  E-value=7.4e-08  Score=45.66  Aligned_cols=26  Identities=23%  Similarity=0.635  Sum_probs=23.9

Q ss_pred             ceeecCccCCccCChhHHHHHHHhcC
Q 040287           27 RVFECKTCNRQFPSFQALGGHRASHK   52 (162)
Q Consensus        27 k~~~C~~C~k~f~~~~~L~~H~~~h~   52 (162)
                      +||.|++|++.|.....|..|+++|+
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H~   26 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHHD   26 (26)
Confidence            58999999999999999999999874

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=98.16  E-value=1e-06  Score=42.41  Aligned_cols=27  Identities=30%  Similarity=0.663  Sum_probs=24.9

Q ss_pred             ceeecC--ccCCccCChhHHHHHHHhcCC
Q 040287           27 RVFECK--TCNRQFPSFQALGGHRASHKK   53 (162)
Q Consensus        27 k~~~C~--~C~k~f~~~~~L~~H~~~h~~   53 (162)
                      ++|.|.  .|++.|.....|..|+++|++
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~~   29 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHTG   29 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGTC
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhCC
Confidence            479999  999999999999999999863

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.09  E-value=1.9e-06  Score=52.15  Aligned_cols=49  Identities=16%  Similarity=0.213  Sum_probs=42.9

Q ss_pred             CCCCcCccCCCCCCceecCCCccccccchhHhhhhccccccccCCCCcccc
Q 040287           61 GGGADTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVALHGNEKVST  111 (162)
Q Consensus        61 ~~l~~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~~~~  111 (162)
                      ..|..|+++|.+++|+.|..|++.|. ...|..|+ .|.++++..+..+..
T Consensus         3 ~~L~~H~~~~c~~r~~~C~~C~~~~~-~~~L~~H~-~~c~~~~~~C~~C~~   51 (75)
T 2d9k_A            3 SGSSGHEETECPLRLAVCQHCDLELS-ILKLKEHE-DYCGARTELCGNCGR   51 (75)
T ss_dssp             CCCSCCCCCCCCCCCEECSSSCCEEC-HHHHHHHH-HHHHHCEEECSSSCC
T ss_pred             hHHHhhCcccCCCcccCCcccChHhh-HHHHHHHH-hHcCCCceEcccCCC
Confidence            46788999999999999999999995 99999999 999999977766544

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=97.76  E-value=2.1e-06  Score=56.81  Aligned_cols=33  Identities=21%  Similarity=0.325  Sum_probs=29.6

Q ss_pred             CccCCCCCCceecCCCccccccchhHhhhhccc
Q 040287           66 TQQSPAKPRTHECSVCGLEFAIGQALGGHMRRH   98 (162)
Q Consensus        66 h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H   98 (162)
                      +...|+|++||.|..|++.|.+.+.|..|+++.
T Consensus        41 ~ded~tGekpfyC~~C~K~F~~~~~L~~H~rsK   73 (124)
T 1zr9_A           41 FDPDLPGGGLHRCLACARYFIDSTNLKTHFRSK   73 (124)
T ss_dssp             SCSSSGGGGCSEETTTTEECSSHHHHHHHTTCH
T ss_pred             ccccCCCCcceEcccCcchhCCHHHHHHHHhhh
Confidence            445688999999999999999999999999864

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.25  E-value=0.00045  Score=40.22  Aligned_cols=54  Identities=17%  Similarity=0.252  Sum_probs=42.8

Q ss_pred             CccCCccCChhHHHHHH-HhcCCCCCCCCCCCCCcCccCCCCCCceecC--CCccccccchhHhhhhccc
Q 040287           32 KTCNRQFPSFQALGGHR-ASHKKPRLTDGTGGGADTQQSPAKPRTHECS--VCGLEFAIGQALGGHMRRH   98 (162)
Q Consensus        32 ~~C~k~f~~~~~L~~H~-~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~--~C~k~F~~~~~L~~H~~~H   98 (162)
                      ..|++.|.+...|..|+ +.|.+.++-             ....+|.|.  .|++.+.....|..|+++.
T Consensus         7 ~~C~~~f~~~~~l~~Hv~~~Hv~~~~~-------------~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~   63 (64)
T 1zw8_A            7 KECPESASSLFDLQRHLLKDHVSQDFK-------------HPMEPLACNWEDCDFLGDDTASIVNHINAQ   63 (64)
T ss_dssp             TTCCCCCSSHHHHHHHHHHHSCCCCCC-------------CSSCCEECCCSSCCCEESSHHHHHHHHHHH
T ss_pred             CCCCCcCCCHHHHHHHHHhhccCcccC-------------CCCCCCEeeCCCCcCCCCChHHHHhhcccc
Confidence            45999999999999998 578765421             022489997  6999999999999999864

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=97.14  E-value=9.3e-05  Score=48.86  Aligned_cols=33  Identities=24%  Similarity=0.311  Sum_probs=29.1

Q ss_pred             cccccCCCceeecCccCCccCChhHHHHHHHhc
Q 040287           19 SVDMTAAGRVFECKTCNRQFPSFQALGGHRASH   51 (162)
Q Consensus        19 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h   51 (162)
                      +-..|+|+++|.|..|++.|.+...|..|+++.
T Consensus        41 ~ded~tGekpfyC~~C~K~F~~~~~L~~H~rsK   73 (124)
T 1zr9_A           41 FDPDLPGGGLHRCLACARYFIDSTNLKTHFRSK   73 (124)
T ss_dssp             SCSSSGGGGCSEETTTTEECSSHHHHHHHTTCH
T ss_pred             ccccCCCCcceEcccCcchhCCHHHHHHHHhhh
Confidence            446789999999999999999999999998653

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=96.99  E-value=0.0019  Score=42.80  Aligned_cols=71  Identities=20%  Similarity=0.260  Sum_probs=50.6

Q ss_pred             ceeecCccCCccCChhHHHHHH--HhcCCC-----------CCCC-CCCCCCcCccCCCCCCceecCCCccccccchhHh
Q 040287           27 RVFECKTCNRQFPSFQALGGHR--ASHKKP-----------RLTD-GTGGGADTQQSPAKPRTHECSVCGLEFAIGQALG   92 (162)
Q Consensus        27 k~~~C~~C~k~f~~~~~L~~H~--~~h~~~-----------~~~~-~~~~l~~h~~~h~~~kp~~C~~C~k~F~~~~~L~   92 (162)
                      +++.|.+|+..|.+...+..|.  +.|...           .+.. .......+...+.+.+.|.|..|++.|.+...+.
T Consensus        31 ~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~~~  110 (127)
T 1zu1_A           31 SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGEDRSKCCPVCNMTFSSPVVAE  110 (127)
T ss_dssp             CSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSCCSSCCSSCCCTTTEETTTTEECSSHHHHH
T ss_pred             CCCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCCCccccccCCCCCeEcCCCCCEeCCHHHHH
Confidence            5799999999999999999997  444211           1100 0001122334566788999999999999999999


Q ss_pred             hhhcc
Q 040287           93 GHMRR   97 (162)
Q Consensus        93 ~H~~~   97 (162)
                      .|...
T Consensus       111 ~H~~g  115 (127)
T 1zu1_A          111 SHYIG  115 (127)
T ss_dssp             HHHTS
T ss_pred             HHHCC
Confidence            99763

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=96.58  E-value=0.0003  Score=41.00  Aligned_cols=48  Identities=10%  Similarity=0.137  Sum_probs=40.8

Q ss_pred             cchhhhhcCCCCCCccccc-cccCCCc------eeecC--ccCCccCChhHHHHHHHhc
Q 040287            2 ANCLMFMSQGGHFDAVNSV-DMTAAGR------VFECK--TCNRQFPSFQALGGHRASH   51 (162)
Q Consensus         2 a~C~k~f~~~~~l~~~~h~-~~h~~~k------~~~C~--~C~k~f~~~~~L~~H~~~h   51 (162)
                      ..|++.|.+...|.  .|+ +.|.+.+      +|.|.  .|++.+.....|..|+++.
T Consensus         7 ~~C~~~f~~~~~l~--~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~   63 (64)
T 1zw8_A            7 KECPESASSLFDLQ--RHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQ   63 (64)
T ss_dssp             TTCCCCCSSHHHHH--HHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHH
T ss_pred             CCCCCcCCCHHHHH--HHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhcccc
Confidence            36999999988888  887 5788765      79996  8999999999999999864

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.38  E-value=0.0012  Score=35.64  Aligned_cols=29  Identities=28%  Similarity=0.479  Sum_probs=24.6

Q ss_pred             CceecCCCccccccchhHhhhhccccccc
Q 040287           74 RTHECSVCGLEFAIGQALGGHMRRHRAVA  102 (162)
Q Consensus        74 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~  102 (162)
                      -+|.|+.|+..|+....|++||+---++.
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~HmkycCp~~   39 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCYCCPEM   39 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHHHCTTT
T ss_pred             CceeCCcccccccchHHHHhhhhhcCcch
Confidence            57999999999999999999999544443

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.72  E-value=0.0067  Score=32.68  Aligned_cols=26  Identities=35%  Similarity=0.443  Sum_probs=23.5

Q ss_pred             ceeecCccCCccCChhHHHHHHHhcC
Q 040287           27 RVFECKTCNRQFPSFQALGGHRASHK   52 (162)
Q Consensus        27 k~~~C~~C~k~f~~~~~L~~H~~~h~   52 (162)
                      .+|.|+.|+..|.....|+.||+.--
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~HmkycC   36 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCYCC   36 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHHHC
T ss_pred             CceeCCcccccccchHHHHhhhhhcC
Confidence            67999999999999999999998543

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=93.16  E-value=0.12  Score=35.52  Aligned_cols=56  Identities=18%  Similarity=0.269  Sum_probs=36.3

Q ss_pred             ceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCCccccccchhHhhhhcccccccc
Q 040287           27 RVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAVAL  103 (162)
Q Consensus        27 k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~  103 (162)
                      ++..|+.|+..+ ....|..|....-                   ..++-.|+.|+..|. ...|..|..++.|+.+
T Consensus       109 ~~v~C~~C~~~~-~r~~l~~H~~~~C-------------------~~r~~~C~~C~~~~~-~~~l~~H~~~~~~~~~  164 (170)
T 3hcs_A          109 ALMDCPQCQRPF-QKFHINIHILKDC-------------------PRRQVSCDNCAASMA-FEDKEIHDQNCPLALE  164 (170)
T ss_dssp             SEEECTTTCCEE-EGGGHHHHHHHTC-------------------TTCEEECTTTCCEEE-GGGHHHHHTTCCC---
T ss_pred             eeeECCCCChHH-HHHHHHHHhhhhC-------------------CCCCeECCCCCCccC-HHHHHhHHHhCcChhh
Confidence            455666666655 3445566654332                   566788999998875 5678899998888765

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=89.22  E-value=0.39  Score=23.97  Aligned_cols=23  Identities=26%  Similarity=0.411  Sum_probs=21.0

Q ss_pred             eeecCccCCccCChhHHHHHHHh
Q 040287           28 VFECKTCNRQFPSFQALGGHRAS   50 (162)
Q Consensus        28 ~~~C~~C~k~f~~~~~L~~H~~~   50 (162)
                      .|.|++|.+.|.+...|..|...
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye~   27 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYEA   27 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHH
T ss_pred             ccCCcHHHHHcCCHHHHHHHHHh
Confidence            59999999999999999999754

>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A

Probab=88.71  E-value=0.21  Score=35.60  Aligned_cols=15  Identities=13%  Similarity=0.390  Sum_probs=11.6

Q ss_pred             CCceeecCccCCccC
Q 040287           25 AGRVFECKTCNRQFP   39 (162)
Q Consensus        25 ~~k~~~C~~C~k~f~   39 (162)
                      +...|.|.+||..+.
T Consensus       168 ~~~~~~C~~CG~i~~  182 (202)
T 1yuz_A          168 DDKFHLCPICGYIHK  182 (202)
T ss_dssp             SCCEEECSSSCCEEE
T ss_pred             CCcEEEECCCCCEEc
Confidence            345799999998753

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=88.57  E-value=0.22  Score=30.45  Aligned_cols=29  Identities=24%  Similarity=0.496  Sum_probs=23.2

Q ss_pred             CCCceecCCCccccccchhHhhhhcccccccc
Q 040287           72 KPRTHECSVCGLEFAIGQALGGHMRRHRAVAL  103 (162)
Q Consensus        72 ~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~  103 (162)
                      .+.-..|-+||+.|.   .|.+|+++|+|..|
T Consensus        18 ~~d~iiClecGK~fK---~LkRHL~~~hgltp   46 (87)
T 2jsp_A           18 QDDHIVCLECGGSFK---SLKRHLTTHHSMTP   46 (87)
T ss_dssp             CSSCEECTBTCCEES---BHHHHHHHTTCSCH
T ss_pred             CCCceEecccchhhH---HHHHHHHHccCCCH
Confidence            344568999999998   58899999777665

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=87.93  E-value=1.9  Score=25.74  Aligned_cols=52  Identities=17%  Similarity=0.388  Sum_probs=38.5

Q ss_pred             CCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCCccccccchhHhhhhc
Q 040287           24 AAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVCGLEFAIGQALGGHMR   96 (162)
Q Consensus        24 ~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~   96 (162)
                      ..--.|.|+.||.+.+ +..|..|...-.                   +-..|.|-.|++.|.. ...+.|-.
T Consensus         6 ~~MV~F~C~~Cgd~lK-K~kv~~H~~~Cr-------------------~~~~~SCIDC~~~F~~-~~y~~Hts   57 (79)
T 1wjv_A            6 SGMVFFTCNACGESVK-KIQVEKHVSNCR-------------------NCECLSCIDCGKDFWG-DDYKSHVK   57 (79)
T ss_dssp             CCCCEEEESSSCCEEE-TTHHHHHHHHCT-------------------TCCEEEETTTTEEEEG-GGTTTCCC
T ss_pred             CceeEEEcCCCCCeee-cccchhHHhhCC-------------------CCCcEEecccCCeeCC-CCEeCEee
Confidence            3445699999998887 566888876543                   3346999999999985 55777754

>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82

Probab=87.18  E-value=0.26  Score=31.23  Aligned_cols=12  Identities=25%  Similarity=0.800  Sum_probs=10.9

Q ss_pred             ceeecCccCCcc
Q 040287           27 RVFECKTCNRQF   38 (162)
Q Consensus        27 k~~~C~~C~k~f   38 (162)
                      .||+|..||..|
T Consensus        66 ~p~~C~~CG~~F   77 (105)
T 2gmg_A           66 KPAQCRKCGFVF   77 (105)
T ss_dssp             CCCBBTTTCCBC
T ss_pred             ECcChhhCcCee
Confidence            479999999999

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=87.01  E-value=0.44  Score=23.98  Aligned_cols=26  Identities=19%  Similarity=0.358  Sum_probs=22.4

Q ss_pred             CCCceecCCCccccccchhHhhhhcc
Q 040287           72 KPRTHECSVCGLEFAIGQALGGHMRR   97 (162)
Q Consensus        72 ~~kp~~C~~C~k~F~~~~~L~~H~~~   97 (162)
                      ....+.|..|+.+|..-.++..|++-
T Consensus         5 ~~~~~~C~~C~IsF~~l~ty~aHKk~   30 (36)
T 1fu9_A            5 EVMKKYCSTCDISFNYVKTYLAHKQF   30 (36)
T ss_dssp             CCCCSEETTTTEECSSHHHHHHHHHH
T ss_pred             ccCcCeeccccceehhhHHHhhhhee
Confidence            34578999999999999999999764

>2djr_A Zinc finger BED domain-containing protein 2; C2H2 type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=86.68  E-value=0.18  Score=30.08  Aligned_cols=28  Identities=21%  Similarity=0.411  Sum_probs=21.3

Q ss_pred             CceecCCCccccc-------cchhHhhhhcccccc
Q 040287           74 RTHECSVCGLEFA-------IGQALGGHMRRHRAV  101 (162)
Q Consensus        74 kp~~C~~C~k~F~-------~~~~L~~H~~~H~~~  101 (162)
                      .--.|.+|++.+.       .-++|.+|++.++.+
T Consensus        27 ~~A~Ck~C~k~ls~g~~s~~GTS~L~rHL~~~H~~   61 (76)
T 2djr_A           27 QYATCRLCGRQVSRGPGVNVGTTALWKHLKSMHRE   61 (76)
T ss_dssp             SCEEESSSCCBCCCCSSCCSSSCHHHHHHHHTTHH
T ss_pred             CEEECCCCCCccCCCCCCCCchHHHHHHHHHHCHH
Confidence            3467999999997       357999999875443

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=86.57  E-value=0.34  Score=24.17  Aligned_cols=25  Identities=20%  Similarity=0.317  Sum_probs=21.8

Q ss_pred             ceecCCCccccccchhHhhhhcc-cc
Q 040287           75 THECSVCGLEFAIGQALGGHMRR-HR   99 (162)
Q Consensus        75 p~~C~~C~k~F~~~~~L~~H~~~-H~   99 (162)
                      .|.|+.|.+.|.+...|..|-.. |.
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye~~H~   30 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYEAVHD   30 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHHTS
T ss_pred             ccCCcHHHHHcCCHHHHHHHHHhccc
Confidence            59999999999999999999754 54

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=85.61  E-value=0.62  Score=30.46  Aligned_cols=31  Identities=23%  Similarity=0.246  Sum_probs=25.9

Q ss_pred             cccccCCCceeecCccCCccCChhHHHHHHH
Q 040287           19 SVDMTAAGRVFECKTCNRQFPSFQALGGHRA   49 (162)
Q Consensus        19 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~   49 (162)
                      +...+.+.+.|.|.+|++.|.+...+..|..
T Consensus        84 ~~~~~~~~~~~~C~~C~~~f~s~~~~~~H~~  114 (127)
T 1zu1_A           84 AEISDGEDRSKCCPVCNMTFSSPVVAESHYI  114 (127)
T ss_dssp             SCCSSCCCTTTEETTTTEECSSHHHHHHHHT
T ss_pred             cccccCCCCCeEcCCCCCEeCCHHHHHHHHC
Confidence            3345667788999999999999999999974

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=84.93  E-value=1.3  Score=22.24  Aligned_cols=27  Identities=19%  Similarity=0.235  Sum_probs=23.2

Q ss_pred             CCceeecCccCCccCChhHHHHHHHhc
Q 040287           25 AGRVFECKTCNRQFPSFQALGGHRASH   51 (162)
Q Consensus        25 ~~k~~~C~~C~k~f~~~~~L~~H~~~h   51 (162)
                      ....+.|..|+-+|.+-.++..|++.-
T Consensus         5 ~~~~~~C~~C~IsF~~l~ty~aHKk~Y   31 (36)
T 1fu9_A            5 EVMKKYCSTCDISFNYVKTYLAHKQFY   31 (36)
T ss_dssp             CCCCSEETTTTEECSSHHHHHHHHHHT
T ss_pred             ccCcCeeccccceehhhHHHhhhheec
Confidence            346789999999999999999998754

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=83.93  E-value=0.67  Score=28.31  Aligned_cols=30  Identities=20%  Similarity=0.424  Sum_probs=23.1

Q ss_pred             cCCCceeecCccCCccCChhHHHHHHHhcCCCC
Q 040287           23 TAAGRVFECKTCNRQFPSFQALGGHRASHKKPR   55 (162)
Q Consensus        23 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~   55 (162)
                      ...+....|-+||+.|+   .|.+|.+.++|..
T Consensus        16 si~~d~iiClecGK~fK---~LkRHL~~~hglt   45 (87)
T 2jsp_A           16 SVQDDHIVCLECGGSFK---SLKRHLTTHHSMT   45 (87)
T ss_dssp             TBCSSCEECTBTCCEES---BHHHHHHHTTCSC
T ss_pred             ccCCCceEecccchhhH---HHHHHHHHccCCC
Confidence            33455689999999998   4889999976543

>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A

Probab=83.75  E-value=0.55  Score=32.44  Aligned_cols=15  Identities=20%  Similarity=0.510  Sum_probs=11.8

Q ss_pred             CCceeecCccCCccC
Q 040287           25 AGRVFECKTCNRQFP   39 (162)
Q Consensus        25 ~~k~~~C~~C~k~f~   39 (162)
                      .+..|.|..||..+.
T Consensus       135 ~~~~~~C~~CG~i~~  149 (170)
T 3pwf_A          135 IKKVYICPICGYTAV  149 (170)
T ss_dssp             CSCEEECTTTCCEEE
T ss_pred             CCCeeEeCCCCCeeC
Confidence            346799999998863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	162
d1njqa_	37	g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale c	2e-12
d1njqa_	37	g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale c	1e-10

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 37

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 55.9 bits (135), Expect = 2e-12
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 27 RVFECKTCNRQFPSFQALGGHRASHKKPR 55
          R + C  C R+F S QALGGH   H++ R
Sbjct: 4  RSYTCSFCKREFRSAQALGGHMNVHRRDR 32

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 37

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 51.6 bits (124), Expect = 1e-10
 Identities = 16/27 (59%), Positives = 18/27 (66%)

Query: 73 PRTHECSVCGLEFAIGQALGGHMRRHR 99
          PR++ CS C  EF   QALGGHM  HR
Sbjct: 3  PRSYTCSFCKREFRSAQALGGHMNVHR 29

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	162
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.78
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.6
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.55
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.53
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.49
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.49
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.45
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.44
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.44
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.4
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.4
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.4
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.38
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.38
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.38
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.36
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.35
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.31
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.3
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.29
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.23
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.22
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.22
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.17
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	99.16
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.16
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	99.16
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.13
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.04
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.02
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.99
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.98
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.97
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.93
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.92
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.89
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.88
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.87
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.82
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.76
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.73
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.63
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.62
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.55
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.48
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.45
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.4
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.39
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.38
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.33
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.29
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.17
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	98.15
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.15
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	98.13
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.01
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.01
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.99
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.99
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.97
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.96
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.96
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.9
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.87
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.83
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.8
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.73
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.73
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.72
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.66
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.65
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.61
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.58
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.36
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.34
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.32
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	97.29
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	97.28
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.28
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.25
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.2
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.03
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	96.91
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.86
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.67
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.6
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.56
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.37
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	96.26
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.14
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	96.05
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	96.03
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	95.7
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	95.69
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	95.64
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	95.56
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	95.3
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	95.04
d1nnqa2	37	Rubrerythrin, C-terminal domain {Archaeon Pyrococc	94.68
d1yuza2	36	Nigerythrin, C-terminal domain {Desulfovibrio vulg	94.28
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	94.17
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	94.15
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	93.82
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	93.65
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	93.59
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	93.56
d1y0jb1	36	U-shaped transcription factor, different fingers {	93.37
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	92.66
d1y0jb1	36	U-shaped transcription factor, different fingers {	92.59
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	92.35
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	92.29
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	91.97
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	91.78
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	90.4
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	89.48
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	89.26
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	89.07
d1tf3a3	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	88.25
d2dlka1	30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	86.21
d1wjpa3	41	Zinc finger protein 295, ZNF295 {Human (Homo sapie	83.4
d2czra1	218	TBP-interacting protein {Thermococcus kodakaraensi	82.56

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.1e-19  Score=103.08  Aligned_cols=53  Identities=30%  Similarity=0.683  Sum_probs=50.9

Q ss_pred             CceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCCccccccchhHhhhhccc
Q 040287           26 GRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRH   98 (162)
Q Consensus        26 ~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H   98 (162)
                      ||||+|+ ||+.|....+|..|+++|+                   |++||.|.+||++|.+.++|.+|+++|
T Consensus         1 EK~y~C~-Cgk~F~~~~~l~~H~~~Ht-------------------~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPCQ-CGKSFTHKSQRDRHMSMHL-------------------GLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEECT-TSCEESSHHHHHHHHHHHS-------------------CCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCCC-CCCeECCHHHhHHHhhccc-------------------cccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            6899995 9999999999999999998                   889999999999999999999999987

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2.2e-16  Score=82.64  Aligned_cols=37  Identities=24%  Similarity=0.473  Sum_probs=35.6

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhcccccc
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAV  101 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~  101 (162)
                      +|+++|+++|||+|++||++|.+.++|.+|+++|+||
T Consensus         2 rH~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             ccCcccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            5889999999999999999999999999999999987

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=9.9e-16  Score=77.13  Aligned_cols=33  Identities=24%  Similarity=0.388  Sum_probs=31.6

Q ss_pred             CCCCCCceecCCCccccccchhHhhhhcccccc
Q 040287           69 SPAKPRTHECSVCGLEFAIGQALGGHMRRHRAV  101 (162)
Q Consensus        69 ~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~  101 (162)
                      +|+|+|||+|.+||++|.+.++|.+|+++|+||
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            588999999999999999999999999999986

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.1e-15  Score=78.81  Aligned_cols=38  Identities=24%  Similarity=0.430  Sum_probs=36.0

Q ss_pred             cccccccCCCceeecCccCCccCChhHHHHHHHhcCCC
Q 040287           17 VNSVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKKP   54 (162)
Q Consensus        17 ~~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~   54 (162)
                      .+|+++|+++|||.|++|||+|...++|.+|+++|+||
T Consensus         1 ~rH~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           1 GRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             CccCcccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            37999999999999999999999999999999999975

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=5.8e-15  Score=76.60  Aligned_cols=36  Identities=19%  Similarity=0.417  Sum_probs=33.7

Q ss_pred             cCccCCCCCCceecCCCccccccchhHhhhhccccc
Q 040287           65 DTQQSPAKPRTHECSVCGLEFAIGQALGGHMRRHRA  100 (162)
Q Consensus        65 ~h~~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~  100 (162)
                      .|.++|+|||||+|++|+++|.++++|.+|+++|.+
T Consensus         1 gh~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_           1 GSTRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CCSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCCccCCccCeEeCCCCCEecCHHHHHHHHhcCcC
Confidence            378899999999999999999999999999999975

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=5.8e-15  Score=76.10  Aligned_cols=34  Identities=24%  Similarity=0.387  Sum_probs=32.0

Q ss_pred             cCCCCCCceecCCCccccccchhHhhhhcccccc
Q 040287           68 QSPAKPRTHECSVCGLEFAIGQALGGHMRRHRAV  101 (162)
Q Consensus        68 ~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~  101 (162)
                      ++|+|||||+|.+||++|.++++|.+|+++|+++
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~~   34 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP   34 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccCCC
Confidence            5789999999999999999999999999999875

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.45  E-value=1.9e-14  Score=73.28  Aligned_cols=32  Identities=19%  Similarity=0.422  Sum_probs=30.4

Q ss_pred             CCCCCceecCCCccccccchhHhhhhcccccc
Q 040287           70 PAKPRTHECSVCGLEFAIGQALGGHMRRHRAV  101 (162)
Q Consensus        70 h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~~  101 (162)
                      |+|||||+|++|++.|.++++|.+|+++|+.+
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~~   33 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCCc
Confidence            67999999999999999999999999999865

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=3.3e-14  Score=71.43  Aligned_cols=33  Identities=18%  Similarity=0.468  Sum_probs=31.6

Q ss_pred             ccCCCceeecCccCCccCChhHHHHHHHhcCCC
Q 040287           22 MTAAGRVFECKTCNRQFPSFQALGGHRASHKKP   54 (162)
Q Consensus        22 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~   54 (162)
                      ||+++|||+|.+||++|...++|..|+++|+||
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            699999999999999999999999999999875

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.9e-15  Score=85.19  Aligned_cols=47  Identities=23%  Similarity=0.442  Sum_probs=45.3

Q ss_pred             chhhhhcCCCCCCccccccccCCCceeecCccCCccCChhHHHHHHHhc
Q 040287            3 NCLMFMSQGGHFDAVNSVDMTAAGRVFECKTCNRQFPSFQALGGHRASH   51 (162)
Q Consensus         3 ~C~k~f~~~~~l~~~~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h   51 (162)
                      +||+.|+....|.  .|+++|++++||.|.+||++|...+.|..|+++|
T Consensus         7 ~Cgk~F~~~~~l~--~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           7 QCGKSFTHKSQRD--RHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             TTSCEESSHHHHH--HHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CCCCeECCHHHhH--HHhhccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            4999999999999  9999999999999999999999999999999987

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1e-13  Score=72.29  Aligned_cols=28  Identities=29%  Similarity=0.725  Sum_probs=25.9

Q ss_pred             CCceeecCccCCccCChhHHHHHHH-hcC
Q 040287           25 AGRVFECKTCNRQFPSFQALGGHRA-SHK   52 (162)
Q Consensus        25 ~~k~~~C~~C~k~f~~~~~L~~H~~-~h~   52 (162)
                      -+|||+|++||+.|..+++|.+|++ +|+
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht   30 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQVHT   30 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSC
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcCccC
Confidence            4799999999999999999999986 687

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1e-13  Score=71.30  Aligned_cols=34  Identities=21%  Similarity=0.458  Sum_probs=32.2

Q ss_pred             cccCCCceeecCccCCccCChhHHHHHHHhcCCC
Q 040287           21 DMTAAGRVFECKTCNRQFPSFQALGGHRASHKKP   54 (162)
Q Consensus        21 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~   54 (162)
                      |+|+|||||+|.+||++|..+++|..|+++|+++
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~~   34 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP   34 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccCCC
Confidence            6899999999999999999999999999999854

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.40  E-value=7.8e-14  Score=72.24  Aligned_cols=35  Identities=29%  Similarity=0.504  Sum_probs=33.3

Q ss_pred             cccccCCCceeecCccCCccCChhHHHHHHHhcCC
Q 040287           19 SVDMTAAGRVFECKTCNRQFPSFQALGGHRASHKK   53 (162)
Q Consensus        19 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~   53 (162)
                      |.|+|++||||+|++|+++|.++++|..|+++|.+
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcCcC
Confidence            78999999999999999999999999999999963

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.38  E-value=4.3e-14  Score=68.28  Aligned_cols=28  Identities=25%  Similarity=0.627  Sum_probs=27.0

Q ss_pred             CCceecCCCccccccchhHhhhhccccc
Q 040287           73 PRTHECSVCGLEFAIGQALGGHMRRHRA  100 (162)
Q Consensus        73 ~kp~~C~~C~k~F~~~~~L~~H~~~H~~  100 (162)
                      ||||+|++||++|.++++|.+|+++|+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            7899999999999999999999999986

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=7.7e-14  Score=71.69  Aligned_cols=33  Identities=15%  Similarity=0.416  Sum_probs=29.3

Q ss_pred             cCCCCCCceecCCCccccccchhHhhhhccccc
Q 040287           68 QSPAKPRTHECSVCGLEFAIGQALGGHMRRHRA  100 (162)
Q Consensus        68 ~~h~~~kp~~C~~C~k~F~~~~~L~~H~~~H~~  100 (162)
                      ++|+|||||.|++|+++|+++++|.+|++.+++
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~   33 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQKHT   33 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHHSS
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHcccccC
Confidence            578999999999999999999999999865443

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.38  E-value=6e-14  Score=68.52  Aligned_cols=29  Identities=34%  Similarity=0.573  Sum_probs=27.9

Q ss_pred             CceecCCCccccccchhHhhhhccccccc
Q 040287           74 RTHECSVCGLEFAIGQALGGHMRRHRAVA  102 (162)
Q Consensus        74 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~  102 (162)
                      |||.|++||++|.+.++|.+|+++|+||+
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCCC
Confidence            69999999999999999999999999985

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.1e-13  Score=67.45  Aligned_cols=29  Identities=21%  Similarity=0.515  Sum_probs=27.8

Q ss_pred             CceecCCCccccccchhHhhhhccccccc
Q 040287           74 RTHECSVCGLEFAIGQALGGHMRRHRAVA  102 (162)
Q Consensus        74 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~  102 (162)
                      |||.|++||++|.++++|.+|+++|+||+
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCcC
Confidence            69999999999999999999999999985

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=2.3e-13  Score=70.91  Aligned_cols=36  Identities=25%  Similarity=0.481  Sum_probs=33.1

Q ss_pred             CCCceecCCCccccccchhHhhhhc-cccccccCCCC
Q 040287           72 KPRTHECSVCGLEFAIGQALGGHMR-RHRAVALHGNE  107 (162)
Q Consensus        72 ~~kp~~C~~C~k~F~~~~~L~~H~~-~H~~~~~~~~~  107 (162)
                      .+|||+|.+||++|+++++|.+|++ +|++++|+.+.
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~   38 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ   38 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSS
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcCccCCCcCcCCc
Confidence            5899999999999999999999986 79999998764

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.31  E-value=7.1e-13  Score=67.33  Aligned_cols=32  Identities=22%  Similarity=0.455  Sum_probs=30.4

Q ss_pred             cCCCceeecCccCCccCChhHHHHHHHhcCCC
Q 040287           23 TAAGRVFECKTCNRQFPSFQALGGHRASHKKP   54 (162)
Q Consensus        23 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~   54 (162)
                      |+|||||+|.+|++.|.++++|.+|+++|+..
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~~   33 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCCc
Confidence            78999999999999999999999999999854

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.30  E-value=2e-13  Score=74.30  Aligned_cols=39  Identities=18%  Similarity=0.256  Sum_probs=34.7

Q ss_pred             CCcCccCCCCCCceecCC--CccccccchhHhhhhccccccc
Q 040287           63 GADTQQSPAKPRTHECSV--CGLEFAIGQALGGHMRRHRAVA  102 (162)
Q Consensus        63 l~~h~~~h~~~kp~~C~~--C~k~F~~~~~L~~H~~~H~~~~  102 (162)
                      +..|+ .|+|++||.|.+  |+++|.+.++|.+|+++|+||+
T Consensus         7 l~~h~-~h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_           7 IDKYV-KEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             GGGSC-EEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             hcchh-hccCCCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            44555 488999999987  9999999999999999999985

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.1e-12  Score=67.33  Aligned_cols=32  Identities=16%  Similarity=0.394  Sum_probs=29.3

Q ss_pred             cccCCCceeecCccCCccCChhHHHHHHHhcC
Q 040287           21 DMTAAGRVFECKTCNRQFPSFQALGGHRASHK   52 (162)
Q Consensus        21 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~   52 (162)
                      |+|+|||||+|++|++.|..+++|..|++.++
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H   32 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQKH   32 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHHS
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHccccc
Confidence            68999999999999999999999999986543

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.23  E-value=1.6e-12  Score=62.61  Aligned_cols=28  Identities=29%  Similarity=0.628  Sum_probs=26.8

Q ss_pred             CceeecCccCCccCChhHHHHHHHhcCC
Q 040287           26 GRVFECKTCNRQFPSFQALGGHRASHKK   53 (162)
Q Consensus        26 ~k~~~C~~C~k~f~~~~~L~~H~~~h~~   53 (162)
                      ||||+|++|++.|..+++|.+|+++|+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            7999999999999999999999999985

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.22  E-value=2.9e-12  Score=62.38  Aligned_cols=29  Identities=34%  Similarity=0.692  Sum_probs=27.4

Q ss_pred             ceeecCccCCccCChhHHHHHHHhcCCCC
Q 040287           27 RVFECKTCNRQFPSFQALGGHRASHKKPR   55 (162)
Q Consensus        27 k~~~C~~C~k~f~~~~~L~~H~~~h~~~~   55 (162)
                      |||.|++|++.|...++|.+|+++|+|++
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCCC
Confidence            69999999999999999999999999764

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=1.1e-12  Score=61.72  Aligned_cols=26  Identities=31%  Similarity=0.585  Sum_probs=25.0

Q ss_pred             CceecCCCccccccchhHhhhhcccc
Q 040287           74 RTHECSVCGLEFAIGQALGGHMRRHR   99 (162)
Q Consensus        74 kp~~C~~C~k~F~~~~~L~~H~~~H~   99 (162)
                      |||+|.+|||+|.++++|.+|+|+|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            69999999999999999999999995

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=6e-12  Score=61.15  Aligned_cols=29  Identities=24%  Similarity=0.618  Sum_probs=27.3

Q ss_pred             ceeecCccCCccCChhHHHHHHHhcCCCC
Q 040287           27 RVFECKTCNRQFPSFQALGGHRASHKKPR   55 (162)
Q Consensus        27 k~~~C~~C~k~f~~~~~L~~H~~~h~~~~   55 (162)
                      |||.|++||+.|.++++|.+|+++|+|++
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCcC
Confidence            68999999999999999999999999764

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=3.8e-12  Score=62.25  Aligned_cols=28  Identities=25%  Similarity=0.619  Sum_probs=26.8

Q ss_pred             CceecCC--CccccccchhHhhhhcccccc
Q 040287           74 RTHECSV--CGLEFAIGQALGGHMRRHRAV  101 (162)
Q Consensus        74 kp~~C~~--C~k~F~~~~~L~~H~~~H~~~  101 (162)
                      |||.|++  ||++|.++++|.+|+++|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            6999998  999999999999999999986

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.16  E-value=5.7e-12  Score=68.39  Aligned_cols=37  Identities=24%  Similarity=0.477  Sum_probs=33.7

Q ss_pred             ccccccCCCceeecCc--cCCccCChhHHHHHHHhcCCCC
Q 040287           18 NSVDMTAAGRVFECKT--CNRQFPSFQALGGHRASHKKPR   55 (162)
Q Consensus        18 ~h~~~h~~~k~~~C~~--C~k~f~~~~~L~~H~~~h~~~~   55 (162)
                      .|+ .|++++||.|.+  |++.|..+++|..|+++|+|++
T Consensus         9 ~h~-~h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_           9 KYV-KEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             GSC-EEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             chh-hccCCCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            666 599999999987  9999999999999999999764

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=3.6e-12  Score=62.44  Aligned_cols=28  Identities=29%  Similarity=0.681  Sum_probs=26.7

Q ss_pred             CceecCC--CccccccchhHhhhhcccccc
Q 040287           74 RTHECSV--CGLEFAIGQALGGHMRRHRAV  101 (162)
Q Consensus        74 kp~~C~~--C~k~F~~~~~L~~H~~~H~~~  101 (162)
                      |||.|++  ||++|.+.++|.+|+|+|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            6999988  999999999999999999986

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=8.3e-12  Score=61.60  Aligned_cols=29  Identities=31%  Similarity=0.605  Sum_probs=26.9

Q ss_pred             CceecC--CCccccccchhHhhhhccccccc
Q 040287           74 RTHECS--VCGLEFAIGQALGGHMRRHRAVA  102 (162)
Q Consensus        74 kp~~C~--~C~k~F~~~~~L~~H~~~H~~~~  102 (162)
                      |||.|+  .||++|++.++|.+|+++|+||+
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            699996  49999999999999999999985

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=3.8e-11  Score=56.35  Aligned_cols=26  Identities=23%  Similarity=0.606  Sum_probs=24.8

Q ss_pred             ceeecCccCCccCChhHHHHHHHhcC
Q 040287           27 RVFECKTCNRQFPSFQALGGHRASHK   52 (162)
Q Consensus        27 k~~~C~~C~k~f~~~~~L~~H~~~h~   52 (162)
                      |||+|.+|||+|..+++|..|+++|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            69999999999999999999999984

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.02  E-value=6.9e-11  Score=58.50  Aligned_cols=29  Identities=24%  Similarity=0.449  Sum_probs=27.0

Q ss_pred             CCceecCC--CccccccchhHhhhhcccccc
Q 040287           73 PRTHECSV--CGLEFAIGQALGGHMRRHRAV  101 (162)
Q Consensus        73 ~kp~~C~~--C~k~F~~~~~L~~H~~~H~~~  101 (162)
                      ||||.|++  ||++|++.++|.+|+++|+..
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~k   31 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccCC
Confidence            68999988  999999999999999999864

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=1e-10  Score=59.60  Aligned_cols=28  Identities=29%  Similarity=0.570  Sum_probs=24.2

Q ss_pred             eeecCc--cCCccCChhHHHHHHHhcCCCC
Q 040287           28 VFECKT--CNRQFPSFQALGGHRASHKKPR   55 (162)
Q Consensus        28 ~~~C~~--C~k~f~~~~~L~~H~~~h~~~~   55 (162)
                      .|.|+.  |++.|.++++|.+|+++|+|++
T Consensus         1 tf~C~~~~C~k~F~~~~~L~~H~r~Htgek   30 (36)
T d2dlka2           1 SFSCPEPACGKSFNFKKHLKEHMKLHSDTR   30 (36)
T ss_dssp             CEECSCTTTCCEESSHHHHHHHHHHHHTSC
T ss_pred             CeECCCCCCCCeeCChhHhccccCeeCCCC
Confidence            378976  9999999999999999998333

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.98  E-value=5.6e-11  Score=57.48  Aligned_cols=27  Identities=33%  Similarity=0.646  Sum_probs=25.6

Q ss_pred             CceecCC--CccccccchhHhhhhccccc
Q 040287           74 RTHECSV--CGLEFAIGQALGGHMRRHRA  100 (162)
Q Consensus        74 kp~~C~~--C~k~F~~~~~L~~H~~~H~~  100 (162)
                      |||.|++  ||++|++.++|.+|+++|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            6999988  99999999999999999986

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=1.8e-10  Score=56.14  Aligned_cols=28  Identities=21%  Similarity=0.554  Sum_probs=26.4

Q ss_pred             ceeecCc--cCCccCChhHHHHHHHhcCCC
Q 040287           27 RVFECKT--CNRQFPSFQALGGHRASHKKP   54 (162)
Q Consensus        27 k~~~C~~--C~k~f~~~~~L~~H~~~h~~~   54 (162)
                      |||+|++  |+++|..+++|.+|+++|+|+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            6899988  999999999999999999975

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=1.8e-10  Score=56.19  Aligned_cols=28  Identities=25%  Similarity=0.487  Sum_probs=26.1

Q ss_pred             ceeecCc--cCCccCChhHHHHHHHhcCCC
Q 040287           27 RVFECKT--CNRQFPSFQALGGHRASHKKP   54 (162)
Q Consensus        27 k~~~C~~--C~k~f~~~~~L~~H~~~h~~~   54 (162)
                      |||.|++  |+++|..+++|.+|+++|+|+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            6999977  999999999999999999875

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=1.7e-10  Score=58.78  Aligned_cols=33  Identities=27%  Similarity=0.445  Sum_probs=29.9

Q ss_pred             ceecCC--CccccccchhHhhhhccccccccCCCC
Q 040287           75 THECSV--CGLEFAIGQALGGHMRRHRAVALHGNE  107 (162)
Q Consensus        75 p~~C~~--C~k~F~~~~~L~~H~~~H~~~~~~~~~  107 (162)
                      .|.|++  ||++|.++++|.+|+++|+|++|..++
T Consensus         1 tf~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           1 SFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             CEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             CeECCCCCCCCeeCChhHhccccCeeCCCCCEeCC
Confidence            378987  999999999999999999999997764

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=1.6e-10  Score=55.20  Aligned_cols=26  Identities=31%  Similarity=0.592  Sum_probs=24.6

Q ss_pred             CceecCC--CccccccchhHhhhhcccc
Q 040287           74 RTHECSV--CGLEFAIGQALGGHMRRHR   99 (162)
Q Consensus        74 kp~~C~~--C~k~F~~~~~L~~H~~~H~   99 (162)
                      |||.|++  |||+|.+.++|++|+++|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            6999988  9999999999999999996

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=5.2e-10  Score=54.96  Aligned_cols=29  Identities=28%  Similarity=0.661  Sum_probs=26.4

Q ss_pred             ceeecC--ccCCccCChhHHHHHHHhcCCCC
Q 040287           27 RVFECK--TCNRQFPSFQALGGHRASHKKPR   55 (162)
Q Consensus        27 k~~~C~--~C~k~f~~~~~L~~H~~~h~~~~   55 (162)
                      |||.|+  .|++.|...++|.+|+++|+|++
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            689995  69999999999999999999764

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.87  E-value=4.7e-10  Score=51.84  Aligned_cols=27  Identities=26%  Similarity=0.592  Sum_probs=25.7

Q ss_pred             CCceecCCCccccccchhHhhhhcccc
Q 040287           73 PRTHECSVCGLEFAIGQALGGHMRRHR   99 (162)
Q Consensus        73 ~kp~~C~~C~k~F~~~~~L~~H~~~H~   99 (162)
                      ||||.|.+||+.|+++...++|.++|.
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhcc
Confidence            689999999999999999999999985

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=7.6e-10  Score=49.56  Aligned_cols=26  Identities=42%  Similarity=0.787  Sum_probs=24.7

Q ss_pred             ceecCCCccccccchhHhhhhccccc
Q 040287           75 THECSVCGLEFAIGQALGGHMRRHRA  100 (162)
Q Consensus        75 p~~C~~C~k~F~~~~~L~~H~~~H~~  100 (162)
                      |++|+.|++.|++++.|+.|||.|+|
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccCC
Confidence            68999999999999999999999986

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.76  E-value=2.3e-09  Score=52.85  Aligned_cols=29  Identities=28%  Similarity=0.645  Sum_probs=26.7

Q ss_pred             CceeecCc--cCCccCChhHHHHHHHhcCCC
Q 040287           26 GRVFECKT--CNRQFPSFQALGGHRASHKKP   54 (162)
Q Consensus        26 ~k~~~C~~--C~k~f~~~~~L~~H~~~h~~~   54 (162)
                      ||||.|.+  |++.|.+.++|.+|+++|+..
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~k   31 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccCC
Confidence            68999988  999999999999999999753

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.73  E-value=1.8e-09  Score=52.03  Aligned_cols=27  Identities=30%  Similarity=0.628  Sum_probs=25.2

Q ss_pred             ceeecCc--cCCccCChhHHHHHHHhcCC
Q 040287           27 RVFECKT--CNRQFPSFQALGGHRASHKK   53 (162)
Q Consensus        27 k~~~C~~--C~k~f~~~~~L~~H~~~h~~   53 (162)
                      |||+|++  |+|.|.+.++|.+|+++|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            6999977  99999999999999999975

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=8.7e-09  Score=46.03  Aligned_cols=26  Identities=23%  Similarity=0.503  Sum_probs=24.3

Q ss_pred             eeecCccCCccCChhHHHHHHHhcCC
Q 040287           28 VFECKTCNRQFPSFQALGGHRASHKK   53 (162)
Q Consensus        28 ~~~C~~C~k~f~~~~~L~~H~~~h~~   53 (162)
                      |.+|++|+|.|+++..|..|+|.|+|
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccCC
Confidence            57899999999999999999999985

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=4.8e-09  Score=49.96  Aligned_cols=26  Identities=31%  Similarity=0.660  Sum_probs=24.3

Q ss_pred             ceeecCc--cCCccCChhHHHHHHHhcC
Q 040287           27 RVFECKT--CNRQFPSFQALGGHRASHK   52 (162)
Q Consensus        27 k~~~C~~--C~k~f~~~~~L~~H~~~h~   52 (162)
                      |||.|+.  |||.|.+.++|.+|+++|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            6899987  9999999999999999985

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=1e-08  Score=47.98  Aligned_cols=29  Identities=31%  Similarity=0.667  Sum_probs=27.1

Q ss_pred             CCceecCCCccccccchhHhhhhcccccc
Q 040287           73 PRTHECSVCGLEFAIGQALGGHMRRHRAV  101 (162)
Q Consensus        73 ~kp~~C~~C~k~F~~~~~L~~H~~~H~~~  101 (162)
                      ||||.|++|+..|.+++.+.-|.|+|.|.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg~   29 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDGS   29 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSCC
T ss_pred             CCCcccchHHHHhhccccceEeeecccCc
Confidence            68999999999999999999999999764

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.48  E-value=4.6e-08  Score=45.02  Aligned_cols=27  Identities=26%  Similarity=0.556  Sum_probs=25.5

Q ss_pred             CceeecCccCCccCChhHHHHHHHhcC
Q 040287           26 GRVFECKTCNRQFPSFQALGGHRASHK   52 (162)
Q Consensus        26 ~k~~~C~~C~k~f~~~~~L~~H~~~h~   52 (162)
                      ||||.|++||+.|..+....+|.++|.
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhcc
Confidence            689999999999999999999999985

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=6.5e-08  Score=46.25  Aligned_cols=32  Identities=22%  Similarity=0.474  Sum_probs=28.3

Q ss_pred             CceeecCccCCccCChhHHHHHHHhcCCCCCC
Q 040287           26 GRVFECKTCNRQFPSFQALGGHRASHKKPRLT   57 (162)
Q Consensus        26 ~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~   57 (162)
                      .+...|++|||.|.....|.+|..+|++++||
T Consensus         3 rk~~~ce~cgk~frdvyhlnrhklshs~ekpy   34 (35)
T d2epra1           3 RKQVACEICGKIFRDVYHLNRHKLSHSGEKPY   34 (35)
T ss_dssp             CCSEEETTTTEEESSHHHHHHHGGGSCSCCCC
T ss_pred             chhhhHHHHHHHHHHHHHHHhhhcccCCCCCC
Confidence            35678999999999999999999999977765

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=7.8e-08  Score=44.94  Aligned_cols=29  Identities=21%  Similarity=0.476  Sum_probs=27.1

Q ss_pred             CceeecCccCCccCChhHHHHHHHhcCCC
Q 040287           26 GRVFECKTCNRQFPSFQALGGHRASHKKP   54 (162)
Q Consensus        26 ~k~~~C~~C~k~f~~~~~L~~H~~~h~~~   54 (162)
                      ||||.|++|+..|+.+..+..|.++|.|.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg~   29 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDGS   29 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSCC
T ss_pred             CCCcccchHHHHhhccccceEeeecccCc
Confidence            68999999999999999999999999764

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=8.5e-08  Score=43.82  Aligned_cols=29  Identities=24%  Similarity=0.468  Sum_probs=27.1

Q ss_pred             CCceecCCCccccccchhHhhhhcccccc
Q 040287           73 PRTHECSVCGLEFAIGQALGGHMRRHRAV  101 (162)
Q Consensus        73 ~kp~~C~~C~k~F~~~~~L~~H~~~H~~~  101 (162)
                      |+||+|+.|...-+.++.|..|.|.|+|.
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~htgd   29 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHTGD   29 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCCSC
T ss_pred             CCcceeeecccccCCchheEEeeecccCc
Confidence            68999999999999999999999999974

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=9.1e-08  Score=43.50  Aligned_cols=27  Identities=30%  Similarity=0.525  Sum_probs=25.1

Q ss_pred             ceecCCCccccccchhHhhhhcccccc
Q 040287           75 THECSVCGLEFAIGQALGGHMRRHRAV  101 (162)
Q Consensus        75 p~~C~~C~k~F~~~~~L~~H~~~H~~~  101 (162)
                      -+.|.+||++|..++.|++|+.+|+||
T Consensus         2 ~hvc~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           2 VHVCAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             CEECTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             cchHHHHhHHHHHHHHHHHHhhcccCC
Confidence            468999999999999999999999986

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=1.5e-07  Score=44.91  Aligned_cols=32  Identities=22%  Similarity=0.312  Sum_probs=29.2

Q ss_pred             CCceecCCCccccccchhHhhhhccccccccC
Q 040287           73 PRTHECSVCGLEFAIGQALGGHMRRHRAVALH  104 (162)
Q Consensus        73 ~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~  104 (162)
                      .+...|..||+.|+..-+|.+|..+|++|+|.
T Consensus         3 rk~~~ce~cgk~frdvyhlnrhklshs~ekpy   34 (35)
T d2epra1           3 RKQVACEICGKIFRDVYHLNRHKLSHSGEKPY   34 (35)
T ss_dssp             CCSEEETTTTEEESSHHHHHHHGGGSCSCCCC
T ss_pred             chhhhHHHHHHHHHHHHHHHhhhcccCCCCCC
Confidence            35678999999999999999999999999984

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=3e-07  Score=41.98  Aligned_cols=28  Identities=29%  Similarity=0.426  Sum_probs=26.6

Q ss_pred             CceeecCccCCccCChhHHHHHHHhcCC
Q 040287           26 GRVFECKTCNRQFPSFQALGGHRASHKK   53 (162)
Q Consensus        26 ~k~~~C~~C~k~f~~~~~L~~H~~~h~~   53 (162)
                      |+||+|..|.+....++.|..|.+.|+|
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~htg   28 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHTG   28 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCCS
T ss_pred             CCcceeeecccccCCchheEEeeecccC
Confidence            6899999999999999999999999986

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=7e-07  Score=40.49  Aligned_cols=27  Identities=26%  Similarity=0.506  Sum_probs=24.6

Q ss_pred             eeecCccCCccCChhHHHHHHHhcCCC
Q 040287           28 VFECKTCNRQFPSFQALGGHRASHKKP   54 (162)
Q Consensus        28 ~~~C~~C~k~f~~~~~L~~H~~~h~~~   54 (162)
                      ...|.+|||.|..++.|++|..+|+++
T Consensus         2 ~hvc~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           2 VHVCAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             CEECTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             cchHHHHhHHHHHHHHHHHHhhcccCC
Confidence            468999999999999999999999864

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.15  E-value=4.4e-07  Score=45.39  Aligned_cols=31  Identities=52%  Similarity=0.844  Sum_probs=27.8

Q ss_pred             CCceecCCCccccccchhHhhhhcccccccc
Q 040287           73 PRTHECSVCGLEFAIGQALGGHMRRHRAVAL  103 (162)
Q Consensus        73 ~kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~  103 (162)
                      .+.|+|.+|++.|.+...|..||+.|..++.
T Consensus         3 ~r~~~C~~C~k~F~s~qALGGH~~~Hr~~r~   33 (37)
T d1njqa_           3 PRSYTCSFCKREFRSAQALGGHMNVHRRDRA   33 (37)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHHHTTCCSCT
T ss_pred             CCccCCCCCCCccCCcccccchHhhhcchHH
Confidence            4679999999999999999999999977654

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=4.8e-07  Score=40.93  Aligned_cols=27  Identities=26%  Similarity=0.512  Sum_probs=25.4

Q ss_pred             CCceecCCCccccccchhHhhhhcccc
Q 040287           73 PRTHECSVCGLEFAIGQALGGHMRRHR   99 (162)
Q Consensus        73 ~kp~~C~~C~k~F~~~~~L~~H~~~H~   99 (162)
                      .|||+|..|...-..++.|.+|+|+|.
T Consensus         1 vkp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           1 VKPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCCcccccccchhcchhhHhhhhhccc
Confidence            479999999999999999999999996

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=4.4e-07  Score=41.59  Aligned_cols=27  Identities=30%  Similarity=0.524  Sum_probs=25.5

Q ss_pred             eecCCCccccccchhHhhhhccccccc
Q 040287           76 HECSVCGLEFAIGQALGGHMRRHRAVA  102 (162)
Q Consensus        76 ~~C~~C~k~F~~~~~L~~H~~~H~~~~  102 (162)
                      |.|++||..-+..+-|++|+|+|++++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSCC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCCC
Confidence            789999999999999999999999874

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=1.1e-06  Score=40.86  Aligned_cols=27  Identities=15%  Similarity=0.415  Sum_probs=24.2

Q ss_pred             CceecCC--CccccccchhHhhhhccccc
Q 040287           74 RTHECSV--CGLEFAIGQALGGHMRRHRA  100 (162)
Q Consensus        74 kp~~C~~--C~k~F~~~~~L~~H~~~H~~  100 (162)
                      |||.|.+  |++++...++|++|++.++|
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            6999987  99999999999999997654

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=1.1e-06  Score=41.21  Aligned_cols=28  Identities=21%  Similarity=0.407  Sum_probs=25.1

Q ss_pred             CceecCC--CccccccchhHhhhh-cccccc
Q 040287           74 RTHECSV--CGLEFAIGQALGGHM-RRHRAV  101 (162)
Q Consensus        74 kp~~C~~--C~k~F~~~~~L~~H~-~~H~~~  101 (162)
                      |||.|++  |.|+|+..+...+|+ |+|..|
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs~e   31 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHSNE   31 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTCSC
T ss_pred             CCccccCCChhhhhcchhhhhhhccccccCC
Confidence            6999988  999999999999997 888754

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.99  E-value=1.6e-06  Score=38.17  Aligned_cols=24  Identities=33%  Similarity=0.654  Sum_probs=22.6

Q ss_pred             eecCCCccccccchhHhhhhcccc
Q 040287           76 HECSVCGLEFAIGQALGGHMRRHR   99 (162)
Q Consensus        76 ~~C~~C~k~F~~~~~L~~H~~~H~   99 (162)
                      |+|..|.++|..++.|.+|+|.|.
T Consensus         1 ykcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhc
Confidence            789999999999999999999985

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.99  E-value=3e-06  Score=42.28  Aligned_cols=30  Identities=47%  Similarity=0.909  Sum_probs=27.1

Q ss_pred             CceeecCccCCccCChhHHHHHHHhcCCCC
Q 040287           26 GRVFECKTCNRQFPSFQALGGHRASHKKPR   55 (162)
Q Consensus        26 ~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~   55 (162)
                      .+.|.|.+|++.|.+..+|-.|++.|..++
T Consensus         3 ~r~~~C~~C~k~F~s~qALGGH~~~Hr~~r   32 (37)
T d1njqa_           3 PRSYTCSFCKREFRSAQALGGHMNVHRRDR   32 (37)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHHHTTCCSC
T ss_pred             CCccCCCCCCCccCCcccccchHhhhcchH
Confidence            467999999999999999999999997654

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=3.8e-06  Score=38.41  Aligned_cols=28  Identities=21%  Similarity=0.394  Sum_probs=25.6

Q ss_pred             eeecCccCCccCChhHHHHHHHhcCCCC
Q 040287           28 VFECKTCNRQFPSFQALGGHRASHKKPR   55 (162)
Q Consensus        28 ~~~C~~C~k~f~~~~~L~~H~~~h~~~~   55 (162)
                      .|.|+.||......+-|+.|+++|++++
T Consensus         1 kYvC~~Cg~~C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           1 KYICEECGIRAKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCC
T ss_pred             CccccccCcccCCHHHHHHHHHHhcCCC
Confidence            3899999999999999999999999764

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.96  E-value=3.3e-06  Score=37.69  Aligned_cols=26  Identities=35%  Similarity=0.593  Sum_probs=24.1

Q ss_pred             ecCccCCccCChhHHHHHHHhcCCCC
Q 040287           30 ECKTCNRQFPSFQALGGHRASHKKPR   55 (162)
Q Consensus        30 ~C~~C~k~f~~~~~L~~H~~~h~~~~   55 (162)
                      .|+.|.|+|.++..|+.|-|.|+|++
T Consensus         2 qcp~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcchHHHHHHhHhhhhccccccCCC
Confidence            59999999999999999999999764

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=1.9e-06  Score=43.37  Aligned_cols=26  Identities=19%  Similarity=0.506  Sum_probs=23.9

Q ss_pred             CCCCceecCCCccccccchhHhhhhc
Q 040287           71 AKPRTHECSVCGLEFAIGQALGGHMR   96 (162)
Q Consensus        71 ~~~kp~~C~~C~k~F~~~~~L~~H~~   96 (162)
                      +|.|||.|..|++.|-+.+.+.+|..
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhh
Confidence            47899999999999999999999964

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=2.8e-06  Score=39.08  Aligned_cols=28  Identities=25%  Similarity=0.487  Sum_probs=24.6

Q ss_pred             CceecCCCccccccchhHhhhhcc-cccc
Q 040287           74 RTHECSVCGLEFAIGQALGGHMRR-HRAV  101 (162)
Q Consensus        74 kp~~C~~C~k~F~~~~~L~~H~~~-H~~~  101 (162)
                      |||.|++|...-+.+++|+.|+++ |..+
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhske   29 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CCccccccccccccchhhhhhhhcccccC
Confidence            699999999999999999999986 5443

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.87  E-value=5.6e-06  Score=36.36  Aligned_cols=24  Identities=38%  Similarity=0.776  Sum_probs=22.7

Q ss_pred             eecCccCCccCChhHHHHHHHhcC
Q 040287           29 FECKTCNRQFPSFQALGGHRASHK   52 (162)
Q Consensus        29 ~~C~~C~k~f~~~~~L~~H~~~h~   52 (162)
                      |+|..|.++|-.++.|.+|+++|.
T Consensus         1 ykcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhc
Confidence            789999999999999999999985

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=4.1e-06  Score=38.31  Aligned_cols=24  Identities=25%  Similarity=0.599  Sum_probs=22.4

Q ss_pred             ceecCCCccccccchhHhhhhccc
Q 040287           75 THECSVCGLEFAIGQALGGHMRRH   98 (162)
Q Consensus        75 p~~C~~C~k~F~~~~~L~~H~~~H   98 (162)
                      ||.|..|+.+|.++++|.+||++.
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkSK   24 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKSK   24 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHSS
T ss_pred             CcccceeeeeEeeccchhHhhhhh
Confidence            799999999999999999999864

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.80  E-value=3.1e-06  Score=37.76  Aligned_cols=26  Identities=31%  Similarity=0.494  Sum_probs=24.5

Q ss_pred             ecCCCccccccchhHhhhhccccccc
Q 040287           77 ECSVCGLEFAIGQALGGHMRRHRAVA  102 (162)
Q Consensus        77 ~C~~C~k~F~~~~~L~~H~~~H~~~~  102 (162)
                      .|+.|.++|.++-.|+.|.|.|+||+
T Consensus         2 qcp~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcchHHHHHHhHhhhhccccccCCC
Confidence            69999999999999999999999985

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.73  E-value=6.8e-06  Score=38.49  Aligned_cols=26  Identities=23%  Similarity=0.436  Sum_probs=23.0

Q ss_pred             ceecCCCccccccchhHhhhhc-cccc
Q 040287           75 THECSVCGLEFAIGQALGGHMR-RHRA  100 (162)
Q Consensus        75 p~~C~~C~k~F~~~~~L~~H~~-~H~~  100 (162)
                      ||.|.+|++.|++.+-|.+|+. .|.|
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~g   27 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHSG   27 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhcC
Confidence            7999999999999999999965 5654

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=1.5e-05  Score=36.90  Aligned_cols=27  Identities=19%  Similarity=0.512  Sum_probs=24.0

Q ss_pred             ceeecCc--cCCccCChhHHHHHHHhcCC
Q 040287           27 RVFECKT--CNRQFPSFQALGGHRASHKK   53 (162)
Q Consensus        27 k~~~C~~--C~k~f~~~~~L~~H~~~h~~   53 (162)
                      |||.|.+  |+|+|...++|+.|++.++|
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            6899976  99999999999999998653

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.72  E-value=6.1e-06  Score=37.63  Aligned_cols=25  Identities=28%  Similarity=0.542  Sum_probs=22.9

Q ss_pred             CceecCC--CccccccchhHhhhhccc
Q 040287           74 RTHECSV--CGLEFAIGQALGGHMRRH   98 (162)
Q Consensus        74 kp~~C~~--C~k~F~~~~~L~~H~~~H   98 (162)
                      .||+|+.  |+++|+..+.|++|.++|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            4899976  999999999999999887

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.66  E-value=2.5e-05  Score=35.59  Aligned_cols=29  Identities=31%  Similarity=0.536  Sum_probs=26.7

Q ss_pred             CceeecCccCCccCChhHHHHHHHhcCCC
Q 040287           26 GRVFECKTCNRQFPSFQALGGHRASHKKP   54 (162)
Q Consensus        26 ~k~~~C~~C~k~f~~~~~L~~H~~~h~~~   54 (162)
                      |..|.|..|...|+..-.|+.|+.+|+|+
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             cceEEeHHHHHHHHHHHhheeeeecccCC
Confidence            56799999999999999999999999864

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=2.4e-05  Score=35.20  Aligned_cols=26  Identities=27%  Similarity=0.563  Sum_probs=24.8

Q ss_pred             ceeecCccCCccCChhHHHHHHHhcC
Q 040287           27 RVFECKTCNRQFPSFQALGGHRASHK   52 (162)
Q Consensus        27 k~~~C~~C~k~f~~~~~L~~H~~~h~   52 (162)
                      |||+|..|.+.-...++|..|.|+|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            79999999999999999999999995

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.61  E-value=1.3e-05  Score=36.51  Aligned_cols=29  Identities=31%  Similarity=0.445  Sum_probs=26.8

Q ss_pred             CCceecCCCccccccchhHhhhhcccccc
Q 040287           73 PRTHECSVCGLEFAIGQALGGHMRRHRAV  101 (162)
Q Consensus        73 ~kp~~C~~C~k~F~~~~~L~~H~~~H~~~  101 (162)
                      |.-|.|..|...|.+.-.|..||-+|+||
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             cceEEeHHHHHHHHHHHhheeeeecccCC
Confidence            45799999999999999999999999986

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.58  E-value=1.4e-05  Score=36.58  Aligned_cols=28  Identities=21%  Similarity=0.358  Sum_probs=25.5

Q ss_pred             CceecCC--CccccccchhHhhhhcccccc
Q 040287           74 RTHECSV--CGLEFAIGQALGGHMRRHRAV  101 (162)
Q Consensus        74 kp~~C~~--C~k~F~~~~~L~~H~~~H~~~  101 (162)
                      +||.|.+  |.+.|.+--.|.+|.-+|+||
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhccccCC
Confidence            5899976  999999999999999999885

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.36  E-value=4.7e-05  Score=34.77  Aligned_cols=28  Identities=32%  Similarity=0.706  Sum_probs=24.6

Q ss_pred             ceeecC--ccCCccCChhHHHHHHHhcCCC
Q 040287           27 RVFECK--TCNRQFPSFQALGGHRASHKKP   54 (162)
Q Consensus        27 k~~~C~--~C~k~f~~~~~L~~H~~~h~~~   54 (162)
                      +||.|.  .|.|.|.+...|.+|..+|+|+
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhccccCC
Confidence            578884  5999999999999999999864

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.34  E-value=8.2e-05  Score=33.78  Aligned_cols=25  Identities=28%  Similarity=0.619  Sum_probs=22.6

Q ss_pred             ceeecC--ccCCccCChhHHHHHHHhc
Q 040287           27 RVFECK--TCNRQFPSFQALGGHRASH   51 (162)
Q Consensus        27 k~~~C~--~C~k~f~~~~~L~~H~~~h   51 (162)
                      .||+|+  .|++.|...+.|++|.++|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            589995  6999999999999999987

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=8.5e-05  Score=37.18  Aligned_cols=26  Identities=19%  Similarity=0.483  Sum_probs=23.1

Q ss_pred             CCCceeecCccCCccCChhHHHHHHH
Q 040287           24 AAGRVFECKTCNRQFPSFQALGGHRA   49 (162)
Q Consensus        24 ~~~k~~~C~~C~k~f~~~~~L~~H~~   49 (162)
                      +|-|||.|.+|+|.|-...++.+|.-
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhh
Confidence            46789999999999999999999864

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=0.0001  Score=36.31  Aligned_cols=29  Identities=24%  Similarity=0.590  Sum_probs=25.7

Q ss_pred             CCCceeec--CccCCccCChhHHHHHHHhcC
Q 040287           24 AAGRVFEC--KTCNRQFPSFQALGGHRASHK   52 (162)
Q Consensus        24 ~~~k~~~C--~~C~k~f~~~~~L~~H~~~h~   52 (162)
                      +++|||.|  +.|+.+|.+...|..|+..|.
T Consensus         2 ~ddkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           2 SDDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TTCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCCceecCCCCccccccchHHHHHhhhhhe
Confidence            35899999  679999999999999998874

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=5.5e-05  Score=37.31  Aligned_cols=28  Identities=25%  Similarity=0.547  Sum_probs=25.0

Q ss_pred             CCCceecC--CCccccccchhHhhhhcccc
Q 040287           72 KPRTHECS--VCGLEFAIGQALGGHMRRHR   99 (162)
Q Consensus        72 ~~kp~~C~--~C~k~F~~~~~L~~H~~~H~   99 (162)
                      .+|||.|.  -|+.+|.+.+.|..|...|.
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhhe
Confidence            58999995  59999999999999988874

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=5.4e-05  Score=35.35  Aligned_cols=27  Identities=19%  Similarity=0.614  Sum_probs=23.4

Q ss_pred             ceeecCc--cCCccCChhHHHHHH-HhcCC
Q 040287           27 RVFECKT--CNRQFPSFQALGGHR-ASHKK   53 (162)
Q Consensus        27 k~~~C~~--C~k~f~~~~~L~~H~-~~h~~   53 (162)
                      |||.|+.  |.|.|...+.-..|+ |+|..
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs~   30 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHSN   30 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTCS
T ss_pred             CCccccCCChhhhhcchhhhhhhccccccC
Confidence            6899977  999999999999997 88864

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=0.00014  Score=33.05  Aligned_cols=24  Identities=29%  Similarity=0.521  Sum_probs=22.4

Q ss_pred             eeecCccCCccCChhHHHHHHHhc
Q 040287           28 VFECKTCNRQFPSFQALGGHRASH   51 (162)
Q Consensus        28 ~~~C~~C~k~f~~~~~L~~H~~~h   51 (162)
                      ||.|..|+..|+.+.+|..||++-
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkSK   24 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKSK   24 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHSS
T ss_pred             CcccceeeeeEeeccchhHhhhhh
Confidence            799999999999999999999864

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=6.6e-05  Score=34.27  Aligned_cols=25  Identities=24%  Similarity=0.620  Sum_probs=22.7

Q ss_pred             CceecCCCccccccchhHhhhhccc
Q 040287           74 RTHECSVCGLEFAIGQALGGHMRRH   98 (162)
Q Consensus        74 kp~~C~~C~k~F~~~~~L~~H~~~H   98 (162)
                      +||+|.+|.....+.++|..|++.-
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~   25 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKF   25 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHH
T ss_pred             CCcccceecccccCcchHHHHHHHH
Confidence            5999999999999999999998753

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.03  E-value=0.00014  Score=31.71  Aligned_cols=22  Identities=32%  Similarity=0.600  Sum_probs=20.7

Q ss_pred             ceecCCCccccccchhHhhhhc
Q 040287           75 THECSVCGLEFAIGQALGGHMR   96 (162)
Q Consensus        75 p~~C~~C~k~F~~~~~L~~H~~   96 (162)
                      ||+|..|...|-++..|+.||-
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999974

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.91  E-value=0.00039  Score=31.71  Aligned_cols=26  Identities=15%  Similarity=0.438  Sum_probs=23.5

Q ss_pred             ceeecCccCCccCChhHHHHHHHhcC
Q 040287           27 RVFECKTCNRQFPSFQALGGHRASHK   52 (162)
Q Consensus        27 k~~~C~~C~k~f~~~~~L~~H~~~h~   52 (162)
                      |||.|..|......+++|+.|+++-+
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkh   26 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKH   26 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHT
T ss_pred             CCccccccccccccchhhhhhhhccc
Confidence            68999999999999999999998743

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.86  E-value=0.00039  Score=30.29  Aligned_cols=24  Identities=25%  Similarity=0.587  Sum_probs=21.6

Q ss_pred             ceeecCccCCccCChhHHHHHHHh
Q 040287           27 RVFECKTCNRQFPSFQALGGHRAS   50 (162)
Q Consensus        27 k~~~C~~C~k~f~~~~~L~~H~~~   50 (162)
                      .||+|..|...|..+..|+.|+..
T Consensus         1 mpykcsscsqqfmqkkdlqshmik   24 (26)
T d2dlqa1           1 MPYKCSSCSQQFMQKKDLQSHMIK   24 (26)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCCcccHHHHHHHHHHHHHHHHHh
Confidence            389999999999999999999853

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.67  E-value=0.0005  Score=30.85  Aligned_cols=26  Identities=31%  Similarity=0.442  Sum_probs=23.7

Q ss_pred             ceecCCCccccccchhHhhhhccccc
Q 040287           75 THECSVCGLEFAIGQALGGHMRRHRA  100 (162)
Q Consensus        75 p~~C~~C~k~F~~~~~L~~H~~~H~~  100 (162)
                      |-+|+.|.++.+.+..|+.|.|+|-.
T Consensus         2 pekc~ecsyscsskaalrvh~rihc~   27 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHCT   27 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGCC
T ss_pred             CccCcccccccCcHHHHHHhhccccC
Confidence            67899999999999999999999853

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.60  E-value=0.00087  Score=30.04  Aligned_cols=25  Identities=28%  Similarity=0.324  Sum_probs=23.1

Q ss_pred             eeecCccCCccCChhHHHHHHHhcC
Q 040287           28 VFECKTCNRQFPSFQALGGHRASHK   52 (162)
Q Consensus        28 ~~~C~~C~k~f~~~~~L~~H~~~h~   52 (162)
                      |-+|..|.++..++..|+.|.|+|-
T Consensus         2 pekc~ecsyscsskaalrvh~rihc   26 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGC
T ss_pred             CccCcccccccCcHHHHHHhhcccc
Confidence            5689999999999999999999985

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.56  E-value=0.00089  Score=29.82  Aligned_cols=23  Identities=30%  Similarity=0.560  Sum_probs=21.0

Q ss_pred             eeecCccCCccCChhHHHHHHHh
Q 040287           28 VFECKTCNRQFPSFQALGGHRAS   50 (162)
Q Consensus        28 ~~~C~~C~k~f~~~~~L~~H~~~   50 (162)
                      ||.|..|||.|-.+.+|-.|...
T Consensus         1 pf~c~kcgkcyfrkenllehear   23 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEAR   23 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHHH
Confidence            68999999999999999999764

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.37  E-value=0.0011  Score=30.09  Aligned_cols=25  Identities=24%  Similarity=0.432  Sum_probs=22.4

Q ss_pred             ceeecCccCCccCChhHHHHHHHhc
Q 040287           27 RVFECKTCNRQFPSFQALGGHRASH   51 (162)
Q Consensus        27 k~~~C~~C~k~f~~~~~L~~H~~~h   51 (162)
                      +||+|+.|...-++.++|..|++.-
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~   25 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKF   25 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHH
T ss_pred             CCcccceecccccCcchHHHHHHHH
Confidence            5899999999999999999998653

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=96.26  E-value=0.0015  Score=30.27  Aligned_cols=23  Identities=30%  Similarity=0.564  Sum_probs=20.9

Q ss_pred             eeecCccCCccCChhHHHHHHHh
Q 040287           28 VFECKTCNRQFPSFQALGGHRAS   50 (162)
Q Consensus        28 ~~~C~~C~k~f~~~~~L~~H~~~   50 (162)
                      ||.|.+|++.|....-|-+|...
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qK   23 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQK   23 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTT
T ss_pred             CcccccccchhhHHHHHHHHHHH
Confidence            79999999999999999999754

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.14  E-value=0.0011  Score=29.46  Aligned_cols=22  Identities=27%  Similarity=0.451  Sum_probs=19.9

Q ss_pred             ceecCCCccccccchhHhhhhc
Q 040287           75 THECSVCGLEFAIGQALGGHMR   96 (162)
Q Consensus        75 p~~C~~C~k~F~~~~~L~~H~~   96 (162)
                      ||+|..||+.+-++.+|..|..
T Consensus         1 pf~c~kcgkcyfrkenllehea   22 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEA   22 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHH
Confidence            7999999999999999998853

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=96.05  E-value=0.0028  Score=27.55  Aligned_cols=22  Identities=18%  Similarity=0.520  Sum_probs=20.4

Q ss_pred             eecCccCCccCChhHHHHHHHh
Q 040287           29 FECKTCNRQFPSFQALGGHRAS   50 (162)
Q Consensus        29 ~~C~~C~k~f~~~~~L~~H~~~   50 (162)
                      |.|+.|-+.|.++.++..|.++
T Consensus         2 ypcp~cfkeftrkdnm~ahvki   23 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKI   23 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEEE
Confidence            8999999999999999999865

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.03  E-value=0.0019  Score=33.32  Aligned_cols=26  Identities=27%  Similarity=0.604  Sum_probs=23.8

Q ss_pred             ceeecCccCCccCChhHHHHHHHhcC
Q 040287           27 RVFECKTCNRQFPSFQALGGHRASHK   52 (162)
Q Consensus        27 k~~~C~~C~k~f~~~~~L~~H~~~h~   52 (162)
                      -.|.|..|+|.|.....|+.|...|-
T Consensus         5 ~l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           5 GILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             ceeeccccccccCCHHHHhHhHHhcC
Confidence            46899999999999999999999884

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.70  E-value=0.0061  Score=28.84  Aligned_cols=27  Identities=22%  Similarity=0.613  Sum_probs=23.6

Q ss_pred             eeecCccCCccCChhHHHHHHHhcCCC
Q 040287           28 VFECKTCNRQFPSFQALGGHRASHKKP   54 (162)
Q Consensus        28 ~~~C~~C~k~f~~~~~L~~H~~~h~~~   54 (162)
                      .|.|..|||+|.+...+.+|--.-+|.
T Consensus         4 afvcskcgktftrrntm~rha~nc~g~   30 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCAGP   30 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCCCC
T ss_pred             eeeecccccchhcchHHHHHhhhcCCC
Confidence            589999999999999999998776654

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.69  E-value=0.0039  Score=29.55  Aligned_cols=28  Identities=21%  Similarity=0.427  Sum_probs=23.9

Q ss_pred             CceecCCCccccccchhHhhhhcccccc
Q 040287           74 RTHECSVCGLEFAIGQALGGHMRRHRAV  101 (162)
Q Consensus        74 kp~~C~~C~k~F~~~~~L~~H~~~H~~~  101 (162)
                      ..|.|..||++|.+...+.+|...-+|.
T Consensus         3 ~afvcskcgktftrrntm~rha~nc~g~   30 (37)
T d1x6ha1           3 AAFVCSKCGKTFTRRNTMARHADNCAGP   30 (37)
T ss_dssp             CCEECSSSCCEESCHHHHHHHHHHCCCC
T ss_pred             ceeeecccccchhcchHHHHHhhhcCCC
Confidence            3689999999999999999998766553

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.64  E-value=0.0016  Score=31.14  Aligned_cols=20  Identities=35%  Similarity=0.282  Sum_probs=18.0

Q ss_pred             ccccccchhHhhhhcccccc
Q 040287           82 GLEFAIGQALGGHMRRHRAV  101 (162)
Q Consensus        82 ~k~F~~~~~L~~H~~~H~~~  101 (162)
                      ++.|.....|..|||+|+||
T Consensus        14 ~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          14 LRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             TCCCSSHHHHHHHTHHHHCC
T ss_pred             CCcchhHHHHHHHHhhcCCC
Confidence            56799999999999999986

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=95.56  E-value=0.0025  Score=27.70  Aligned_cols=22  Identities=23%  Similarity=0.484  Sum_probs=20.5

Q ss_pred             eecCCCccccccchhHhhhhcc
Q 040287           76 HECSVCGLEFAIGQALGGHMRR   97 (162)
Q Consensus        76 ~~C~~C~k~F~~~~~L~~H~~~   97 (162)
                      |.|+.|=+.|.+++++..|.++
T Consensus         2 ypcp~cfkeftrkdnm~ahvki   23 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKI   23 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEEE
Confidence            7899999999999999999875

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.30  E-value=0.0025  Score=32.85  Aligned_cols=25  Identities=28%  Similarity=0.549  Sum_probs=22.6

Q ss_pred             ceecCCCccccccchhHhhhhcccc
Q 040287           75 THECSVCGLEFAIGQALGGHMRRHR   99 (162)
Q Consensus        75 p~~C~~C~k~F~~~~~L~~H~~~H~   99 (162)
                      -|.|..|||.|.....|+.|...|-
T Consensus         6 l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           6 ILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             eeeccccccccCCHHHHhHhHHhcC
Confidence            5889999999999999999987774

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.04  E-value=0.0051  Score=27.35  Aligned_cols=23  Identities=30%  Similarity=0.609  Sum_probs=21.1

Q ss_pred             ceecCCCccccccchhHhhhhcc
Q 040287           75 THECSVCGLEFAIGQALGGHMRR   97 (162)
Q Consensus        75 p~~C~~C~k~F~~~~~L~~H~~~   97 (162)
                      .|.|+.|+...++++.|..|++.
T Consensus         2 k~qcphc~tiiarksdlrvhlrn   24 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRK   24 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHH
T ss_pred             CccCCcchhheeehhhhhHHhhh
Confidence            48999999999999999999874

>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.68  E-value=0.0086  Score=29.49  Aligned_cols=27  Identities=26%  Similarity=0.650  Sum_probs=21.4

Q ss_pred             CceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCCccc
Q 040287           26 GRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVCGLE   84 (162)
Q Consensus        26 ~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C~k~   84 (162)
                      ++.|.|.+||..+.                                |+.|-.|++||..
T Consensus         3 ~~~~~C~vCG~i~~--------------------------------g~~P~~CPvCg~~   29 (37)
T d1nnqa2           3 KKVYICPICGYTAV--------------------------------DEAPEYCPVCGAP   29 (37)
T ss_dssp             SCEEECTTTCCEEE--------------------------------SCCCSBCTTTCCB
T ss_pred             CcEEECCCCCCEec--------------------------------CCCCCcCCCCCCc
Confidence            46799999998753                                6678899999853

>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Nigerythrin, C-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=94.28  E-value=0.013  Score=28.56  Aligned_cols=14  Identities=14%  Similarity=0.432  Sum_probs=11.1

Q ss_pred             CCceeecCccCCcc
Q 040287           25 AGRVFECKTCNRQF   38 (162)
Q Consensus        25 ~~k~~~C~~C~k~f   38 (162)
                      +++.|.|.+||...
T Consensus         2 ~~~~~vC~vCGyi~   15 (36)
T d1yuza2           2 DDKFHLCPICGYIH   15 (36)
T ss_dssp             SCCEEECSSSCCEE
T ss_pred             CCCEEECCCCCCEe
Confidence            35779999999874

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.17  E-value=0.012  Score=28.01  Aligned_cols=20  Identities=25%  Similarity=0.159  Sum_probs=17.5

Q ss_pred             CCccCChhHHHHHHHhcCCC
Q 040287           35 NRQFPSFQALGGHRASHKKP   54 (162)
Q Consensus        35 ~k~f~~~~~L~~H~~~h~~~   54 (162)
                      ++.|.....|..|+|+|+||
T Consensus        14 ~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          14 LRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             TCCCSSHHHHHHHTHHHHCC
T ss_pred             CCcchhHHHHHHHHhhcCCC
Confidence            46799999999999999875

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=94.15  E-value=0.0094  Score=27.32  Aligned_cols=28  Identities=25%  Similarity=0.566  Sum_probs=24.6

Q ss_pred             CceecCC--CccccccchhHhhhhcccccc
Q 040287           74 RTHECSV--CGLEFAIGQALGGHMRRHRAV  101 (162)
Q Consensus        74 kp~~C~~--C~k~F~~~~~L~~H~~~H~~~  101 (162)
                      |.|-|..  |+-.|.....|..|.-.|+||
T Consensus         2 k~~iCsf~dC~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           2 KRYICSFADCGAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             CCEECSSGGGCCEESSHHHHHHHHHHHHCC
T ss_pred             CceEeeCCCcchhhccchhhhHHhhhhcCC
Confidence            4688865  999999999999999999986

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=93.82  E-value=0.018  Score=25.33  Aligned_cols=24  Identities=29%  Similarity=0.706  Sum_probs=20.6

Q ss_pred             eec--CccCCccCChhHHHHHHHhcC
Q 040287           29 FEC--KTCNRQFPSFQALGGHRASHK   52 (162)
Q Consensus        29 ~~C--~~C~k~f~~~~~L~~H~~~h~   52 (162)
                      |.|  +-|+|.|+.-..|+.|+-+|+
T Consensus         2 yvchfe~c~kafkkhnqlkvhqf~ht   27 (28)
T d2j7ja1           2 YVCHFENCGKAFKKHNQLKVHQFSHT   27 (28)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHHHH
T ss_pred             eEEEecCchHHHhhccceEEEeeccc
Confidence            566  569999999999999998875

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.65  E-value=0.016  Score=25.83  Aligned_cols=20  Identities=25%  Similarity=0.393  Sum_probs=17.9

Q ss_pred             CCccccccchhHhhhhcccc
Q 040287           80 VCGLEFAIGQALGGHMRRHR   99 (162)
Q Consensus        80 ~C~k~F~~~~~L~~H~~~H~   99 (162)
                      -|++.|+..+.+++|+.+|.
T Consensus         8 gC~K~Frd~saMRKHlhtHG   27 (28)
T d1ubdc1           8 GCTKMFRDNSAMRKHLHTHG   27 (28)
T ss_dssp             TCCCEESSHHHHHHHHGGGS
T ss_pred             cHHHHhhchHHHHHHhhccC
Confidence            39999999999999998873

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.59  E-value=0.033  Score=24.61  Aligned_cols=24  Identities=25%  Similarity=0.526  Sum_probs=21.5

Q ss_pred             eeecCccCCccCChhHHHHHHHhc
Q 040287           28 VFECKTCNRQFPSFQALGGHRASH   51 (162)
Q Consensus        28 ~~~C~~C~k~f~~~~~L~~H~~~h   51 (162)
                      .|.|+.|+-....++.|..|++.-
T Consensus         2 k~qcphc~tiiarksdlrvhlrnl   25 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRKQ   25 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHHT
T ss_pred             CccCCcchhheeehhhhhHHhhhc
Confidence            489999999999999999998753

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=93.56  E-value=0.012  Score=25.88  Aligned_cols=24  Identities=29%  Similarity=0.472  Sum_probs=20.4

Q ss_pred             eecCC--CccccccchhHhhhhcccc
Q 040287           76 HECSV--CGLEFAIGQALGGHMRRHR   99 (162)
Q Consensus        76 ~~C~~--C~k~F~~~~~L~~H~~~H~   99 (162)
                      |.|..  |++.|.....|+.|+-+|+
T Consensus         2 yvchfe~c~kafkkhnqlkvhqf~ht   27 (28)
T d2j7ja1           2 YVCHFENCGKAFKKHNQLKVHQFSHT   27 (28)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHHHH
T ss_pred             eEEEecCchHHHhhccceEEEeeccc
Confidence            56754  9999999999999988875

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.37  E-value=0.017  Score=27.00  Aligned_cols=24  Identities=29%  Similarity=0.650  Sum_probs=21.2

Q ss_pred             CCceecCCCccccccchhHhhhhc
Q 040287           73 PRTHECSVCGLEFAIGQALGGHMR   96 (162)
Q Consensus        73 ~kp~~C~~C~k~F~~~~~L~~H~~   96 (162)
                      ...|.|.-||-.|+..+.|..|+.
T Consensus         6 parf~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           6 PARFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CCCCBCTTTCCBCSCHHHHHHHTT
T ss_pred             ccceeccccceeecChhHHHhhhh
Confidence            345899999999999999999975

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.66  E-value=0.074  Score=23.81  Aligned_cols=25  Identities=24%  Similarity=0.628  Sum_probs=21.2

Q ss_pred             eeecCccCCccCChhHHHHHHHhcC
Q 040287           28 VFECKTCNRQFPSFQALGGHRASHK   52 (162)
Q Consensus        28 ~~~C~~C~k~f~~~~~L~~H~~~h~   52 (162)
                      -|.|..|||..++...++.|....+
T Consensus         2 ~ftc~hcgkqlks~~gmkyhvmadh   26 (30)
T d2ctda2           2 MFTCHHCGKQLRSLAGMKYHVMANH   26 (30)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHHT
T ss_pred             ceechhHHHHHhhccCceEEEeecc
Confidence            4789999999999999999976543

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.59  E-value=0.036  Score=25.83  Aligned_cols=23  Identities=35%  Similarity=0.600  Sum_probs=20.5

Q ss_pred             ceeecCccCCccCChhHHHHHHH
Q 040287           27 RVFECKTCNRQFPSFQALGGHRA   49 (162)
Q Consensus        27 k~~~C~~C~k~f~~~~~L~~H~~   49 (162)
                      -.|.|.-||-.|.+.+.|..|+.
T Consensus         7 arf~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           7 ARFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CCCBCTTTCCBCSCHHHHHHHTT
T ss_pred             cceeccccceeecChhHHHhhhh
Confidence            35999999999999999999864

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.35  E-value=0.023  Score=31.79  Aligned_cols=26  Identities=27%  Similarity=0.442  Sum_probs=22.8

Q ss_pred             CCCceecCCCccccccchhHhhhhcc
Q 040287           72 KPRTHECSVCGLEFAIGQALGGHMRR   97 (162)
Q Consensus        72 ~~kp~~C~~C~k~F~~~~~L~~H~~~   97 (162)
                      |.-.|-|..|+|.|.+...|..|+++
T Consensus        12 G~gqfYCv~C~K~F~se~~l~~H~ks   37 (67)
T d1zr9a1          12 GGGLHRCLACARYFIDSTNLKTHFRS   37 (67)
T ss_dssp             GGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             CCCEEecccccCccCCHHHHHHHHcc
Confidence            34458999999999999999999886

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=92.29  E-value=0.039  Score=28.12  Aligned_cols=26  Identities=15%  Similarity=0.371  Sum_probs=23.9

Q ss_pred             CCCceecCCCccccccchhHhhhhcc
Q 040287           72 KPRTHECSVCGLEFAIGQALGGHMRR   97 (162)
Q Consensus        72 ~~kp~~C~~C~k~F~~~~~L~~H~~~   97 (162)
                      .+.|-.|+.|+-...++.+|.+|...
T Consensus        21 s~qpatcpic~avirqsrnlrrhlel   46 (54)
T d1yuja_          21 SEQPATCPICYAVIRQSRNLRRHLEL   46 (54)
T ss_dssp             TSCCEECTTTCCEESSHHHHHHHHHH
T ss_pred             ccCCCCCchHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999875

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=91.97  E-value=0.076  Score=25.01  Aligned_cols=28  Identities=18%  Similarity=0.562  Sum_probs=23.9

Q ss_pred             CCceeecCccCCccCChhHHHHHHHhcC
Q 040287           25 AGRVFECKTCNRQFPSFQALGGHRASHK   52 (162)
Q Consensus        25 ~~k~~~C~~C~k~f~~~~~L~~H~~~h~   52 (162)
                      ++..|+|.+|.++|...+++-+|..+.+
T Consensus         5 g~~~yRC~~C~r~YTHISNFCRHyvtSH   32 (37)
T d2drpa1           5 GEHTYRCKVCSRVYTHISNFCRHYVTSH   32 (37)
T ss_dssp             ETTEEECTTTCCEESSHHHHHHHHHHHS
T ss_pred             cCcEEEeehhhHHHHHHHHHHHHHHhhc
Confidence            4568999999999999999999976543

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=91.78  E-value=0.058  Score=24.58  Aligned_cols=28  Identities=18%  Similarity=0.440  Sum_probs=24.0

Q ss_pred             ceeecC--ccCCccCChhHHHHHHHhcCCC
Q 040287           27 RVFECK--TCNRQFPSFQALGGHRASHKKP   54 (162)
Q Consensus        27 k~~~C~--~C~k~f~~~~~L~~H~~~h~~~   54 (162)
                      |.|.|.  .|+-.|...+.|..|.-.|+|+
T Consensus         2 k~~iCsf~dC~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           2 KRYICSFADCGAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             CCEECSSGGGCCEESSHHHHHHHHHHHHCC
T ss_pred             CceEeeCCCcchhhccchhhhHHhhhhcCC
Confidence            568885  5999999999999999999864

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.40  E-value=0.16  Score=27.72  Aligned_cols=42  Identities=21%  Similarity=0.467  Sum_probs=27.8

Q ss_pred             cccCCCceeecCccCCccCChhHHHHHHHhcCCCCCCCCCCCCCcCccCCCCCCceecCCCccc
Q 040287           21 DMTAAGRVFECKTCNRQFPSFQALGGHRASHKKPRLTDGTGGGADTQQSPAKPRTHECSVCGLE   84 (162)
Q Consensus        21 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~l~~h~~~h~~~kp~~C~~C~k~   84 (162)
                      +--+....|+|+.|+++|..-..+.   ....                   ....|.|..|+-.
T Consensus         7 rd~~~~~~y~Cp~C~~~ys~Lda~~---L~d~-------------------~~~~F~C~~C~~e   48 (62)
T d1vd4a_           7 RDSTNRASFKCPVCSSTFTDLEANQ---LFDP-------------------MTGTFRCTFCHTE   48 (62)
T ss_dssp             SSCCSSSEEECSSSCCEEEHHHHHH---HEET-------------------TTTEEBCSSSCCB
T ss_pred             hccccCCceECCCCCCCcchhhHHH---hcCc-------------------CCCeEEecCCCCE
Confidence            3445567899999999997554433   2221                   2346899999754

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.48  E-value=0.053  Score=30.20  Aligned_cols=24  Identities=29%  Similarity=0.463  Sum_probs=21.2

Q ss_pred             ceeecCccCCccCChhHHHHHHHh
Q 040287           27 RVFECKTCNRQFPSFQALGGHRAS   50 (162)
Q Consensus        27 k~~~C~~C~k~f~~~~~L~~H~~~   50 (162)
                      -.|-|-.|+|.|.+...|..|+++
T Consensus        14 gqfYCv~C~K~F~se~~l~~H~ks   37 (67)
T d1zr9a1          14 GLHRCLACARYFIDSTNLKTHFRS   37 (67)
T ss_dssp             GCSEETTTTEECSSHHHHHHHTTC
T ss_pred             CEEecccccCccCCHHHHHHHHcc
Confidence            458999999999999999999753

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=89.26  E-value=0.073  Score=25.06  Aligned_cols=26  Identities=19%  Similarity=0.309  Sum_probs=22.6

Q ss_pred             CCCceecCCCccccccchhHhhhhcc
Q 040287           72 KPRTHECSVCGLEFAIGQALGGHMRR   97 (162)
Q Consensus        72 ~~kp~~C~~C~k~F~~~~~L~~H~~~   97 (162)
                      |+-.|.|..|.+.+..-+++-+|--+
T Consensus         5 g~~~yRC~~C~r~YTHISNFCRHyvt   30 (37)
T d2drpa1           5 GEHTYRCKVCSRVYTHISNFCRHYVT   30 (37)
T ss_dssp             ETTEEECTTTCCEESSHHHHHHHHHH
T ss_pred             cCcEEEeehhhHHHHHHHHHHHHHHh
Confidence            45679999999999999999999654

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=89.07  E-value=0.25  Score=24.98  Aligned_cols=27  Identities=15%  Similarity=0.225  Sum_probs=23.7

Q ss_pred             CCCceeecCccCCccCChhHHHHHHHh
Q 040287           24 AAGRVFECKTCNRQFPSFQALGGHRAS   50 (162)
Q Consensus        24 ~~~k~~~C~~C~k~f~~~~~L~~H~~~   50 (162)
                      ..+.|-.|++|+-...++.+|.+|...
T Consensus        20 ~s~qpatcpic~avirqsrnlrrhlel   46 (54)
T d1yuja_          20 QSEQPATCPICYAVIRQSRNLRRHLEL   46 (54)
T ss_dssp             TTSCCEECTTTCCEESSHHHHHHHHHH
T ss_pred             cccCCCCCchHHHHHHHHHHHHHHHHH
Confidence            357899999999999999999999754

>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=88.25  E-value=0.14  Score=22.90  Aligned_cols=23  Identities=22%  Similarity=0.637  Sum_probs=19.2

Q ss_pred             CceecCC--CccccccchhHhhhhc
Q 040287           74 RTHECSV--CGLEFAIGQALGGHMR   96 (162)
Q Consensus        74 kp~~C~~--C~k~F~~~~~L~~H~~   96 (162)
                      +.|+|..  |+.+|.++.++++|..
T Consensus         1 knf~cdsd~cdl~fttkanmkkhfn   25 (31)
T d1tf3a3           1 KNFTCDSDGCDLRFTTKANMKKHFN   25 (31)
T ss_dssp             CCEECSSSSCCCEESSHHHHHHHHH
T ss_pred             CCccccCCCcceEEeehHHHHHHHh
Confidence            3578864  9999999999999964

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.21  E-value=0.16  Score=22.58  Aligned_cols=18  Identities=33%  Similarity=0.431  Sum_probs=15.7

Q ss_pred             CCccccccchhHhhhhcc
Q 040287           80 VCGLEFAIGQALGGHMRR   97 (162)
Q Consensus        80 ~C~k~F~~~~~L~~H~~~   97 (162)
                      -||+.|+....|..|.+-
T Consensus         7 gc~kifsnrqylnhh~ky   24 (30)
T d2dlka1           7 GCGRIFSNRQYLNHHKKY   24 (30)
T ss_dssp             TTCCEESSHHHHHHHHHH
T ss_pred             CchhhhccHHHHHhHHHH
Confidence            499999999999999763

>d1wjpa3 g.37.1.1 (A:67-107) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 295, ZNF295
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.40  E-value=0.27  Score=23.28  Aligned_cols=24  Identities=25%  Similarity=0.502  Sum_probs=20.5

Q ss_pred             ceeecCccCCccCChhHHHHHHHh
Q 040287           27 RVFECKTCNRQFPSFQALGGHRAS   50 (162)
Q Consensus        27 k~~~C~~C~k~f~~~~~L~~H~~~   50 (162)
                      +...|-+|-++|+++-.+.+|+..
T Consensus         2 kkltclecmrtfkssfsiwrhqve   25 (41)
T d1wjpa3           2 KKLTCLECMRTFKSSFSIWRHQVE   25 (41)
T ss_dssp             GGGEEGGGTEECSSHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHHHHhhhe
Confidence            346799999999999999999754

>d2czra1 c.52.4.1 (A:1-218) TBP-interacting protein {Thermococcus kodakaraensis [TaxId: 311400]}

class: Alpha and beta proteins (a/b)
fold: Restriction endonuclease-like
superfamily: TBP-interacting protein-like
family: TBP-interacting protein-like
domain: TBP-interacting protein
species: Thermococcus kodakaraensis [TaxId: 311400]

Probab=82.56  E-value=0.23  Score=32.63  Aligned_cols=24  Identities=29%  Similarity=0.605  Sum_probs=20.5

Q ss_pred             ceecCCCccccccchhHhhhhcccc
Q 040287           75 THECSVCGLEFAIGQALGGHMRRHR   99 (162)
Q Consensus        75 p~~C~~C~k~F~~~~~L~~H~~~H~   99 (162)
                      -|+|..||+ +..-.+|.+||+.|.
T Consensus       146 FYKCe~CgK-YvDie~~~~H~k~HG  169 (218)
T d2czra1         146 FYKCEECGK-YVDIENLEAHLREHG  169 (218)
T ss_dssp             EEECTTTCC-EEEGGGHHHHHHTTT
T ss_pred             EeehhhcCc-eecHHHHHHHHHHcC
Confidence            489999998 567889999999884