Citrus Sinensis ID: 040293

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------
Protein Sequence
MAGWFYLGGREEARSKQEEEEEEKEENLYLYRSSANEEIYNSTKGFELWPQYYHQQQENMSNYLSFGVGPSRRSSSNFINAAAASDESSRSGGFVMRQGVGGGGGGGGGGMNCQDCGNQAKKDCPHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALQRHQQQQEQQQLNQQDSQHHHHHHHQQQQFRGENPKRQRENQGLEVSQFPSELSSSAVFRCVRAIDDPDEEFAYQTAVHIGGHVFKGILYDQGPENRYTAAAESSHSQQLNLITAATATTTTTTGTVAAGTSNPSANLIDPSLYPAPLNAFIAGTQFFPPPRS
Secondary Structure (PSIPRED)
cccEEEcccccccccccccccccccccEEEEccccccccccccccEEEcccccHHHHHHHcccccccccccccccccccccccccccccccccEEEEcccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccccccEEEEEEEEEccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEccccccccccccccccccccccEEEEcccccHHEcccccEEEcccHHHcccccccccEEccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccHHcHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEcccccccEEEEEEEEEcccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccc
Coil and Loop (DISEMBL)
magwfylggreearskqeEEEEEKEENLYLYRSSANeeiynstkgfelwpQYYHQQQENMSnylsfgvgpsrrsssnfinaaaasdessrsggfvmrqgvggggggggggmncqdcgnqakkdcphmrcrtccksrgfqcqthvkstwvpaAKRRERQQQLAALQRHQQQQEQQQLnqqdsqhhhhhhhqqqqfrgenpkrqrenqglevsqfpselssSAVFRCVraiddpdeefAYQTAVHIGghvfkgilydqgpenrytaaaeSSHSQQLNLITAATAttttttgtvaagtsnpsanlidpslypaplnafiagtqffppprs
Flexible Loop (DISEMBL)
magwfylggreearskqeeeeeekeenlylyrSSANEEIYNSTKGFELWPQYYHQQQENMSNYLSFGVGPSRRSSSNFINAAAasdessrsgGFVMRQGVGGGGGGGGGGMNCQDCGNQAKKDCPHMRCRTCCksrgfqcqthvkstwvpaaKRRERQQQLAALQRHQQQQEQQQLNQQDSQHHHHHHhqqqqfrgenPKRQRENQGLevsqfpselssSAVFRCVRAIDDPDEEFAYQTAVHIGGHVFKGILYDQGPENRYTAAAESSHSQQLNLITAATATTTTTTGTVAAGTSNPSANLIDPSLYPAPLNAFIAGTqffppprs
Low Complexity Region (SEG)
MAGWFYLGGreearskqeeeeeekeeNLYLYRSSANEEIYNSTKGFELWPQYYHQQQENMSNYLSFGVGPsrrsssnfinaaaasDESSRSGGFVMRQgvggggggggggMNCQDCGNQAKKDCPHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERqqqlaalqrhqqqqeqqqlnqqdsqhhhhhhhqqqqFRGENPKRQRENQGLEVSQFPSELSSSAVFRCVRAIDDPDEEFAYQTAVHIGGHVFKGILYDQGPENRYTAAAESSHSQQLNLItaatattttttgtvaagtSNPSANLIDPSLYPAPLNAFIAGTQFFPPPRS
Disordered region (IsUnstruct)
******************************Y*****EEIYNSTKGFELWPQYYHQQ*****NYL***********************************************************CPHMRCRTCCKSRGFQCQTHVKSTWV***********************************************************************AVFRCVRAIDDPDEEFAYQTAVHIGGHVFKGILYDQ***********************************************************************
Disordered Region (DISOPRED)
*AGWFY**********************YLYRSSANEEIYNSTKGFELWPQYYHQ************************************************************CGNQAKKDCPHMRCRTCCKSRGFQCQTHVKSTW*******************************************************************ELSSSAVFRCVRAIDDPDEEFAYQTAVHIGGHVFKGILYDQG*******************************************NLIDPSLYPAPLNAFIAGTQFFP****
Disordered Region (DISEMBL)
MAGWFYLGGR*****************LYLYRSSANEEIYNSTKGFELWPQYYHQQQENMSNYLSFGVGPSRRSSSNFINA**********GGFVMRQGVGGGGGGGGGGMNCQDCGNQAKKDCPHMRCRTCCKSRGFQCQTHVKSTWVPAAK****************************************************************SSSAVFRCVRAIDDPDEEFAYQTAVHIGGHVFKGILYDQGPENRY**********QLNLITAATATTTTTTGTVAAGTSNPSANLIDPSLYPAPLNAFIAGTQFFPPPRS
Disordered Region (DISPRO)
************************EENLYLYRSSANEEIYNSTKGFELWPQYYHQQQENMSNYLSFGVGPS****************S**SGG*****************MNCQDC*NQAKKDCPHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLA***************************************************PSELSSSAVFRCVRAIDDPDEEFAYQTAVHIGGHVFKGILYDQGPE*****************************************NLIDPSLYPAPLNAFIAGTQFFP****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAGWFYLGGREEARSKQEEEEEEKEENLYLYRSSANEEIYNSTKGFELWPQYYHQQQENMSNYLSFGVGPSRRSSSNFINAAAASDESSRSGGFVMRQGVGGGGGGGGGGMNCQDCGNQAKKDCPHMRCRTCCKSRGFQCQTHVKSTWVPAAKxxxxxxxxxxxxxxxxxxxxxQLNQQDSQHHHHHHHQQQQFRGENPKRQRENQGLEVSQFPSELSSSAVFRCVRAIDDPDEEFAYQTAVHIGGHVFKGILYDQGPENRYTAAAESSHSQQLNLITAATATTTTTTGTVAAGTSNPSANLIDPSLYPAPLNAFIAGTQFFPPPRS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	327
317106677	315	JHL18I08.14 [Jatropha curcas]	0.899	0.933	0.637	1e-92
255538812	311	transcription factor, putative [Ricinus	0.886	0.932	0.617	2e-91
224062055	321	predicted protein [Populus trichocarpa]	0.896	0.912	0.616	9e-89
225458113	320	PREDICTED: uncharacterized protein LOC10	0.883	0.903	0.581	2e-81
356518006	301	PREDICTED: uncharacterized protein LOC10	0.886	0.963	0.544	9e-78
356509885	305	PREDICTED: uncharacterized protein LOC10	0.899	0.963	0.544	1e-76
302142584	289	unnamed protein product [Vitis vinifera]	0.788	0.892	0.525	8e-75
449470120	347	PREDICTED: uncharacterized protein LOC10	0.975	0.919	0.552	4e-74
297842297	344	hypothetical protein ARALYDRAFT_476700 [	0.911	0.866	0.479	6e-72
356564329	326	PREDICTED: uncharacterized protein LOC10	0.908	0.911	0.519	2e-71

>gi|317106677|dbj|BAJ53180.1| JHL18I08.14 [Jatropha curcas]

 Score =  346 bits (887), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 222/348 (63%), Positives = 251/348 (72%), Gaps = 54/348 (15%)

Query: 1   MAGWFYLGGREEARSKQEEEEEEKEENLYLYRSSANEEIYNSTKGFELWPQYYHQQQENM 60
           MAGWFYL GRE A + ++ E++ +E NL+LYRS+ NE+IYN  KGFE+WPQYYHQQQ NM
Sbjct: 1   MAGWFYLSGREGAVTSKQGEDKNQENNLFLYRSN-NEQIYN--KGFEIWPQYYHQQQ-NM 56

Query: 61  SNYLSFGVGPSRRSSSNFINAAAASDESSRSGGFVMRQGVGGGGGGGGGGMNCQDCGNQA 120
           +NY SFGVGPSRRS          SDESSRSG  VMRQG  GGGGGG   MNCQDCGNQA
Sbjct: 57  NNYSSFGVGPSRRS---------FSDESSRSGFTVMRQGGLGGGGGG---MNCQDCGNQA 104

Query: 121 KKDCPHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALQRHQQQQEQQQLNQQD 180
           KKDC H+RCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQL+ALQ            QQ 
Sbjct: 105 KKDCAHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLSALQ------------QQQ 152

Query: 181 SQHHHHHHHQQQQFRGENPKRQRENQ----------------GLEVSQFPSELSSSAVFR 224
                 H  QQQQFRGENPKRQRENQ                GLEV+ FP E++S AVFR
Sbjct: 153 QHQEQQHQQQQQQFRGENPKRQRENQGGAPSLACTRLGTTTSGLEVAHFPPEVNSPAVFR 212

Query: 225 CVR--AIDDPDEEFAYQTAVHIGGHVFKGILYDQGPENRYT--AAAESSHSQQLNLITAA 280
           CV+  A+DD DE+FAYQTAV+IGGH+F+G+LYDQGP++RYT    + S  +QQLNLITAA
Sbjct: 213 CVKVSAMDDADEQFAYQTAVNIGGHMFRGLLYDQGPDSRYTSGGESSSGGAQQLNLITAA 272

Query: 281 TATTTTTTGTVAAGTSNPSANLIDP-SLYPAPLNAFIAGTQFFPPPRS 327
           T +T  T           +  LIDP SLYPAPLNAFIAGTQFFPPPRS
Sbjct: 273 TTSTEATPSNQQG-----TGALIDPSSLYPAPLNAFIAGTQFFPPPRS 315

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538812|ref|XP_002510471.1| transcription factor, putative [Ricinus communis] gi|223551172|gb|EEF52658.1| transcription factor, putative [Ricinus communis]

 Score =  341 bits (875), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 215/348 (61%), Positives = 245/348 (70%), Gaps = 58/348 (16%)

Query: 1   MAGWFYLGGREEARSKQEEEEEEKEENLYLYRSSANEEIYNST-KGFELWPQYYHQQQEN 59
           MAGWFYL  +EE     E+++E    NL+LYRSS  +EIYN+  KGFE+WPQYYHQQQ N
Sbjct: 1   MAGWFYLSKQEE-----EKDQENNNNNLFLYRSSNEQEIYNNNNKGFEIWPQYYHQQQ-N 54

Query: 60  MSNYLSFGVGPSRRSSSNFINAAAASDESSRSGGFVMRQGVGGGGGGGGGGMNCQDCGNQ 119
           M++Y SFGVGPSRRS          SDESSRSG  VMRQ       G GGGMNCQDCGNQ
Sbjct: 55  MNSYSSFGVGPSRRS---------FSDESSRSGFTVMRQS------GLGGGMNCQDCGNQ 99

Query: 120 AKKDCPHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALQRHQQQQEQQQLNQQ 179
           AKKDC H+RCRTCCKSRGF CQTHVKSTWVPAAKRRERQQQL+ALQ+ QQQ + QQ    
Sbjct: 100 AKKDCAHLRCRTCCKSRGFLCQTHVKSTWVPAAKRRERQQQLSALQQQQQQHQHQQ---- 155

Query: 180 DSQHHHHHHHQQQQFRGENPKRQRENQ----------------GLEVSQFPSELSSSAVF 223
                   + +Q QFRGENPKRQRENQ                GLEVS FP E++S AVF
Sbjct: 156 --------NQEQNQFRGENPKRQRENQGGVPSLACTRLATTTSGLEVSHFPPEVNSPAVF 207

Query: 224 RCVRA--IDDPDEEFAYQTAVHIGGHVFKGILYDQGPENRYT--AAAESSHSQQLNLITA 279
           RCVR   ++D DE++AYQTAV+IGGHVFKGILYDQG + RYT    + S  +QQLNLITA
Sbjct: 208 RCVRVSPMEDTDEQYAYQTAVNIGGHVFKGILYDQGVDVRYTSGGESSSGGAQQLNLITA 267

Query: 280 ATATTTTTTGTVAAGTSNPSANLIDPSLYPAPLNAFIAGTQFFPPPRS 327
           A  T T T     A  ++P A L+DPSLYPA  NA+IAGTQFFPPPRS
Sbjct: 268 AATTATLTA---TANPTHPGA-LLDPSLYPASFNAYIAGTQFFPPPRS 311

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224062055|ref|XP_002300732.1| predicted protein [Populus trichocarpa] gi|222842458|gb|EEE80005.1| predicted protein [Populus trichocarpa]

 Score =  333 bits (853), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 219/355 (61%), Positives = 244/355 (68%), Gaps = 62/355 (17%)

Query: 1   MAGWFYLGGREEARSKQEEEEEEKEENLYLYRSSANEEIYNSTKGFELWPQYYHQQQENM 60
           MAGWFYLG RE   SKQ++E+E    +L+LYRSS NEEIYN+ KGFELWPQYY QQQ NM
Sbjct: 1   MAGWFYLGEREGPSSKQDQEKEVNNSSLFLYRSS-NEEIYNNNKGFELWPQYYPQQQ-NM 58

Query: 61  SNYLSFGVGPSRRSSSNFINAAAASDESSRSGGFVMRQGVGGGGGGGGGGMNCQDCGNQA 120
            N  SFGVGPSRR+ S+        D S RSG  VMRQG G GGG     MNCQDCGNQA
Sbjct: 59  -NSFSFGVGPSRRNFSD--------DHSPRSGFTVMRQGGGLGGG-----MNCQDCGNQA 104

Query: 121 KKDCPHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALQRHQQQQEQQQLNQQD 180
           KKDCPH RCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAA              QQ 
Sbjct: 105 KKDCPHSRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAA-------------LQQQ 151

Query: 181 SQHHHHHHHQQQQFRGENPKRQRENQ-------------------GLEVSQFPSELSSSA 221
           +Q       QQQQFRGENPKRQRENQ                   GLE++ FP E++S A
Sbjct: 152 NQEQQQQQQQQQQFRGENPKRQRENQGGASSLACTRLATTTSDQLGLEMTAFPPEVNSQA 211

Query: 222 VFRCVR--AIDDPDEEFAYQTAVHIGGHVFKGILYDQGPENRY---TAAAESSHSQQLNL 276
           VFRCV+  A+DD +++ AYQTAV+IGGHVF+GILYDQGP+ RY      + SS +QQL L
Sbjct: 212 VFRCVKVSALDDAEDQLAYQTAVNIGGHVFRGILYDQGPDGRYTSTGGESSSSGAQQLGL 271

Query: 277 I---TAATATTTTTTGTVAAGTSNPSANLIDP-SLYPAPLNAFIAGTQFFPPPRS 327
           I   T +T  TTT TG  AAG +     L DP SLYPAPLNAFIAGTQFFPPPRS
Sbjct: 272 ITAATTSTTATTTNTGNPAAGNT-----LFDPSSLYPAPLNAFIAGTQFFPPPRS 321

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458113|ref|XP_002280777.1| PREDICTED: uncharacterized protein LOC100260953 [Vitis vinifera]

 Score =  308 bits (790), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 207/356 (58%), Positives = 233/356 (65%), Gaps = 67/356 (18%)

Query: 1   MAGWFYLGGREEARSKQEEEEEEKEEN---------LYLYRSSANEEIYNSTKGFELWPQ 51
           MAG+F LGGRE    ++E EEE+   N         L+LYR   NEEIYN  KGFELW Q
Sbjct: 1   MAGYFSLGGRERVNLREEGEEEKVVHNPGNEIPSNSLFLYR---NEEIYN--KGFELWQQ 55

Query: 52  YYHQ---QQENM--SNYLSFGVG-PSRRSSSNFINAAAASDESSRSGGFVMRQGVGGGGG 105
           Y HQ   Q +N+  S+  +FGV  PS R+ +        SDES RSG  VMRQG GGGG 
Sbjct: 56  YCHQRLHQPQNIVFSSSATFGVSTPSGRTYN-------LSDESCRSGFTVMRQGGGGGG- 107

Query: 106 GGGGGMNCQDCGNQAKKDCPHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALQ 165
                MNCQDCGNQAKKDC HMRCRTCCKSRGF C THVKSTWVPAAKRRERQ QLAA Q
Sbjct: 108 -----MNCQDCGNQAKKDCIHMRCRTCCKSRGFPCPTHVKSTWVPAAKRRERQLQLAAFQ 162

Query: 166 RHQQQQEQQQLNQQDSQHHHHHHHQQQQFRGENPKRQREN----------QGLEVSQFPS 215
           + QQQQ+QQQ  Q             QQ RGEN KRQREN           GLEV  FPS
Sbjct: 163 QQQQQQQQQQEQQHQQ----------QQIRGENQKRQRENPVAPALATTTSGLEVGHFPS 212

Query: 216 ELSSSAVFRCVR--AIDDPDEEFAYQTAVHIGGHVFKGILYDQGPENRY---TAAAESSH 270
           E++S A FRCVR  A+D+ DE+ AYQTAV+IGGHVFKGILYD GPE+RY   +++   S 
Sbjct: 213 EVNSPAYFRCVRVSAMDEADEQLAYQTAVNIGGHVFKGILYDHGPESRYGGESSSGGGSG 272

Query: 271 SQQLNLITAATATTTTTTGTVAAGTSNPSANLIDPSLYPAPLNAFIAGTQFFPPPR 326
           SQQ NLITA    TT         TSN +  L+DPSLYPAPLN F+AGTQFFPPPR
Sbjct: 273 SQQHNLITAPPGVTT---------TSNQATTLLDPSLYPAPLNVFMAGTQFFPPPR 319

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518006|ref|XP_003527675.1| PREDICTED: uncharacterized protein LOC100805274 [Glycine max]

 Score =  296 bits (758), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 184/338 (54%), Positives = 213/338 (63%), Gaps = 48/338 (14%)

Query: 1   MAGWFYLGGREEARSKQEEEEEEKEENLYLYRSSANEEIYNSTKGFELWPQ----YYHQQ 56
           MAG+F LGG +    ++ E+  +K  NL L R   NEEIYNS  GFE+WPQ    Y+  Q
Sbjct: 1   MAGFFSLGGSQNKEEEEVEKGGDKN-NLLLLR---NEEIYNSKGGFEIWPQSSSSYHQHQ 56

Query: 57  QENMSNYLSFGVGPSRRSSSNFINAAAASDESSRSGGFVMRQGVGGGGGGGGGGMNCQDC 116
            +   NY +FGVGPSRR+ S  ++   +  ES+R G  VMR GV          MNCQDC
Sbjct: 57  NQAYQNYFAFGVGPSRRNRSEDVSLCVSDHESTRFGLTVMRSGVSSSMS-----MNCQDC 111

Query: 117 GNQAKKDCPHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALQRHQQQQEQQQL 176
           GNQAKKDC H+RCRTCCKSRGFQCQTHVKSTWVPAAKRRER QQLAALQ+  Q  ++   
Sbjct: 112 GNQAKKDCSHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERHQQLAALQQQHQHPKR--- 168

Query: 177 NQQDSQHHHHHHHQQQQFRGENPKRQRENQGLEVSQFPSELSSSAVFRCVR--AIDDPDE 234
                  HH      Q      P       GLE+ QFP E+S+SAVFRCVR  A+D  DE
Sbjct: 169 -------HHRDTTTTQLASAPQPI-----IGLELGQFPPEVSTSAVFRCVRVSAVDASDE 216

Query: 235 EFAYQTAVHIGGHVFKGILYDQGPENRYT--AAAESS---HSQQLNLITAATATTTTTTG 289
           + AYQT+V+IGGHVFKG LYDQGPE+ YT  AAAE S     Q L LIT A   TT T+G
Sbjct: 217 QCAYQTSVNIGGHVFKGFLYDQGPESSYTTSAAAEGSSGGEPQPLGLITGA---TTATSG 273

Query: 290 TVAAGTSNPSANLIDPSLYPAPLNAFIAGTQFFPPPRS 327
                      N  DPSLYPAPLNAF+AGTQFF  PRS
Sbjct: 274 N----------NPFDPSLYPAPLNAFMAGTQFFQHPRS 301

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509885|ref|XP_003523673.1| PREDICTED: uncharacterized protein LOC100818588 [Glycine max]

 Score =  293 bits (749), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 184/338 (54%), Positives = 217/338 (64%), Gaps = 44/338 (13%)

Query: 1   MAGWFYLGGREEARSKQEEEEEEK--EENLYLYRSSANEEIYNSTKGFELWPQY---YHQ 55
           MAG+F LGG +     +EEEE EK  + NL L R   NEEIYN+  GFE+WPQ    YH 
Sbjct: 1   MAGFFSLGGTQ----NKEEEEVEKGDKNNLLLLR---NEEIYNNKGGFEIWPQSSSSYH- 52

Query: 56  QQENMSNYLSFGVGPSRRSSSNFINAAAASDESSRSGGFVMRQGVGGGGGGGGGGMNCQD 115
               +SNY +FGVGPSRR+ S  ++   + DES+R G  VMR G   G       MNCQD
Sbjct: 53  ----LSNYFAFGVGPSRRNRSEDVSLCVSEDESTRFGLSVMRTG---GSSSSSMSMNCQD 105

Query: 116 CGNQAKKDCPHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALQRHQQQQEQQQ 175
           CGNQAKKDC H+RCRTCCKSRGFQCQTHVKSTWVPAAKRRER QQLA     Q QQ+ + 
Sbjct: 106 CGNQAKKDCAHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERHQQLAE---LQLQQQFRG 162

Query: 176 LNQQDSQHHHHHHHQQQQFRGENPKRQRENQGLEVSQFPSELSSSAVFRCVR--AIDDPD 233
           +     + HH       Q         +   GLE+ QFP+E+S+SA+FRCVR  A+D  D
Sbjct: 163 VGDNIPKRHHPDTTTSTQL----ASAPQPVTGLELGQFPAEVSTSALFRCVRVSAVDASD 218

Query: 234 EEFAYQTAVHIGGHVFKGILYDQGPENRYTAAAESSHS----QQLNLITAATATTTTTTG 289
           E++AYQT+V+IGGHVFKG LYDQGPE+ YT AA    S    QQL  ITAA  T TT+  
Sbjct: 219 EQYAYQTSVNIGGHVFKGFLYDQGPESSYTGAAAEGSSGGEPQQLGFITAAATTATTSGN 278

Query: 290 TVAAGTSNPSANLIDPSLYPAPLNAFIAGTQFFPPPRS 327
           +             DPSLYPAPLNAF+AGTQFF PPRS
Sbjct: 279 SP-----------FDPSLYPAPLNAFMAGTQFFQPPRS 305

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142584|emb|CBI19787.3| unnamed protein product [Vitis vinifera]

 Score =  286 bits (732), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 187/356 (52%), Positives = 211/356 (59%), Gaps = 98/356 (27%)

Query: 1   MAGWFYLGGREEARSKQEEEEEEKEEN---------LYLYRSSANEEIYNSTKGFELWPQ 51
           MAG+F LGGRE    ++E EEE+   N         L+LYR   NEEIYN  KGFELW Q
Sbjct: 1   MAGYFSLGGRERVNLREEGEEEKVVHNPGNEIPSNSLFLYR---NEEIYN--KGFELWQQ 55

Query: 52  YYHQ---QQENM--SNYLSFGVG-PSRRSSSNFINAAAASDESSRSGGFVMRQGVGGGGG 105
           Y HQ   Q +N+  S+  +FGV  PS R+ +        SDES RSG  VMRQG GGGG 
Sbjct: 56  YCHQRLHQPQNIVFSSSATFGVSTPSGRTYN-------LSDESCRSGFTVMRQGGGGGG- 107

Query: 106 GGGGGMNCQDCGNQAKKDCPHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALQ 165
                MNCQDCGNQAKKDC HMRCRTCCKSRGF C THVKSTWVPAAKRRE Q       
Sbjct: 108 -----MNCQDCGNQAKKDCIHMRCRTCCKSRGFPCPTHVKSTWVPAAKRRENQ------- 155

Query: 166 RHQQQQEQQQLNQQDSQHHHHHHHQQQQFRGENPKRQREN----------QGLEVSQFPS 215
                                             KRQREN           GLEV  FPS
Sbjct: 156 ----------------------------------KRQRENPVAPALATTTSGLEVGHFPS 181

Query: 216 ELSSSAVFRCVR--AIDDPDEEFAYQTAVHIGGHVFKGILYDQGPENRY---TAAAESSH 270
           E++S A FRCVR  A+D+ DE+ AYQTAV+IGGHVFKGILYD GPE+RY   +++   S 
Sbjct: 182 EVNSPAYFRCVRVSAMDEADEQLAYQTAVNIGGHVFKGILYDHGPESRYGGESSSGGGSG 241

Query: 271 SQQLNLITAATATTTTTTGTVAAGTSNPSANLIDPSLYPAPLNAFIAGTQFFPPPR 326
           SQQ NLITA    TT         TSN +  L+DPSLYPAPLN F+AGTQFFPPPR
Sbjct: 242 SQQHNLITAPPGVTT---------TSNQATTLLDPSLYPAPLNVFMAGTQFFPPPR 288

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449470120|ref|XP_004152766.1| PREDICTED: uncharacterized protein LOC101213154 [Cucumis sativus] gi|449532739|ref|XP_004173338.1| PREDICTED: uncharacterized LOC101213154 [Cucumis sativus]

 Score =  284 bits (726), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 196/355 (55%), Positives = 236/355 (66%), Gaps = 36/355 (10%)

Query: 1   MAGWFYLGG-REEARSKQEEEEEEKEENLYLYRSSANEEIYNSTKGFELWPQYYHQQQE- 58
           MAG+FYLGG RE   +KQEE+EEE+E+NL+LYR+  ++EIYN  KGFE+WPQ Y+     
Sbjct: 1   MAGFFYLGGGREGPPNKQEEDEEEREQNLFLYRN--DQEIYN--KGFEIWPQQYNNNNNH 56

Query: 59  -------NMSNYLSFGVGPSRRSSSNFINAAAASDESSRSGGFVMR-----QGVGGGGGG 106
                  ++ N+LSFGVGPSRRS    IN    SDE SRS   +MR              
Sbjct: 57  QHQQPNPSLPNHLSFGVGPSRRSF--MINDP--SDEPSRSAFTLMRPAAAAFAAAAASAA 112

Query: 107 GGGGMNCQDCGNQAKKDCPHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALQR 166
             GGMNCQDCGNQAKKDC ++RCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQ+AALQ 
Sbjct: 113 TAGGMNCQDCGNQAKKDCAYLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQIAALQH 172

Query: 167 HQQQQE----QQQLNQQDSQHHHHHHHQQQQFRGENPKRQRENQGLEVSQFPSELSSSAV 222
            QQQ++          +++Q                P+      GLE++QFPSE++S AV
Sbjct: 173 QQQQEQFRGGDNSKRLRETQTATAIAAAPTASASACPRLPSITSGLELAQFPSEVNSPAV 232

Query: 223 FRCVR--AIDDPDEEFAYQTAVHIGGHVFKGILYDQGPENRYTAA-------AESSHSQQ 273
           FRCV+  A+DD DEEFAYQTAV+IGGHVFKGILYDQGPE RYTAA            +  
Sbjct: 233 FRCVKVSAMDDADEEFAYQTAVNIGGHVFKGILYDQGPELRYTAAGESSSGHGGDGSTHP 292

Query: 274 LNLITAATATTTTTTGTV-AAGTSNPSANLIDPSLYPAPLNAFIAGTQFFPPPRS 327
           LNLI   T+T+T+   +   A  S  +A L+DPS+YPAPLNAF+AGTQFFPP RS
Sbjct: 293 LNLIAGPTSTSTSAATSTNPAAASASTAPLLDPSIYPAPLNAFMAGTQFFPPSRS 347

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842297|ref|XP_002889030.1| hypothetical protein ARALYDRAFT_476700 [Arabidopsis lyrata subsp. lyrata] gi|297334871|gb|EFH65289.1| hypothetical protein ARALYDRAFT_476700 [Arabidopsis lyrata subsp. lyrata]

 Score =  277 bits (708), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 179/373 (47%), Positives = 219/373 (58%), Gaps = 75/373 (20%)

Query: 1   MAGWFYLGGREEARSKQEEEEEEKEEN-------LYLYRSSANEEIYNSTKGFELWP-QY 52
           MAG+FYLGGR+   +KQ+  + +K+ +       LYLY+    +EIYN+ KGFE+WP QY
Sbjct: 1   MAGFFYLGGRDN-NNKQDHHQVDKDHHHQDNSNYLYLYK----DEIYNNNKGFEIWPPQY 55

Query: 53  YHQQQENM------------SNYLSFGVGPS------RRSSSNFINAAAASDESSRSGGF 94
           + QQ+               +N+ SFG+ PS        + S  +     SD     GGF
Sbjct: 56  FQQQEHQQQQHQQRQHASAPANFYSFGMVPSGSSSNNNNNRSRSLYFNVVSDH--EPGGF 113

Query: 95  -VMRQGVGGGGGGGGGGMNCQDCGNQAKKDCPHMRCRTCCKSRGFQCQTHVKSTWVPAAK 153
            V RQG          GMNCQDCGNQAKKDCPHMRCRTCCKSRGF CQTHVKSTWVPAAK
Sbjct: 114 TVTRQG----------GMNCQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHVKSTWVPAAK 163

Query: 154 RRERQQQLAALQRH----QQQQEQQQL-------NQQDSQHHHHHHHQQQQFRGENPKRQ 202
           RRER  QLA+LQ H    ++ Q  ++L       N  D  H           R  N    
Sbjct: 164 RRERLAQLASLQHHSASSRETQNAKRLREASGGNNDDDKDHSGGAGSALANTRVVNAN-- 221

Query: 203 RENQGLEVS-QFPSELSSSAVFRCVRAI----DDPDEEFAYQTAVHIGGHVFKGILYDQG 257
             N GLEVS Q P E++S AVFRCV+      D+ D+E+AYQTAV+IGGHVFKGILYDQG
Sbjct: 222 -SNSGLEVSQQLPQEVNSPAVFRCVKVSSIEDDEDDQEYAYQTAVNIGGHVFKGILYDQG 280

Query: 258 PENRYTAAAESSHSQQLNLITAATATTTTT--TGTVAAGTSNPSANLIDP-SLYPAPLNA 314
           P        +  H+  LNL+ A+TATTT    T T     +N +  ++DP SLYPA LN+
Sbjct: 281 P--------DQDHNHHLNLL-ASTATTTNVEETATKTVTGNNNNGLMLDPSSLYPAQLNS 331

Query: 315 FIAGTQFFPPPRS 327
           FIAGT FF PPRS
Sbjct: 332 FIAGTPFFTPPRS 344

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564329|ref|XP_003550407.1| PREDICTED: uncharacterized protein LOC100807290 [Glycine max]

 Score =  275 bits (703), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 185/356 (51%), Positives = 226/356 (63%), Gaps = 59/356 (16%)

Query: 1   MAGWFYLGGREEARSKQEEEEEEKEENLYLYRSSANEEIYNSTKGFELWPQY-YHQQQEN 59
           MAG+F LG + +A  ++E++ E+  +  +L+R++ NEEIYN  KGFE+WPQ  YH   +N
Sbjct: 1   MAGFFSLGRQNKAEEQEEDQREDNCQ--FLFRNNVNEEIYN--KGFEIWPQSSYHHHHQN 56

Query: 60  MSNYLSFGVGPSRRSSS--------NFINAAAASDESSRSGGFVMRQGVGGGGGGGGGGM 111
           ++N+ SFGVGPSRR+++        N   + + SDES+R G  VMR G GG GGGG   M
Sbjct: 57  LTNFYSFGVGPSRRNNNNSSSNNNVNDEVSVSFSDESNRFGFTVMRSGGGGVGGGG---M 113

Query: 112 NCQDCGNQAKKDCPHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALQRHQQQQ 171
           NCQDCGNQAKKDC H+RCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQL+ALQ  QQ  
Sbjct: 114 NCQDCGNQAKKDCQHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLSALQHQQQN- 172

Query: 172 EQQQLNQQDSQHHHHHHHQQQQFRGENPKRQREN------------------QGLEVSQF 213
                             QQ QFRG++ KR REN                   GLE+ QF
Sbjct: 173 ------------------QQPQFRGDHSKRHRENIEGAAAGSLACVPVPITTTGLELGQF 214

Query: 214 PSELSSSAVFRCVR--AIDDPDEEFAYQTAVHIGGHVFKGILYDQGPENRYTAAAESSHS 271
           P EL+S AVFRCV+  A+D PDE +AYQTAV+IGGHVFKGILYDQG +  Y  A     S
Sbjct: 215 PPELNSPAVFRCVKVSAMDAPDERYAYQTAVNIGGHVFKGILYDQGTDGPYAGAGCEGSS 274

Query: 272 QQLNLITAATATTTTTTGTVAAGTSNPSANLIDPSLYPAPLNAFIAGTQFFPPPRS 327
                    +     TT T A  + NP     + SLY AP+NA++AGT FFPPPRS
Sbjct: 275 GGGGEAQPLSLMAAATTTTAATTSGNP----FEASLYTAPMNAYMAGTHFFPPPRS 326

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	327
TAIR|locus:2013109	345	SRS7 "AT1G19790" [Arabidopsis	0.474	0.449	0.472	8.8e-59
TAIR|locus:2005659	346	SRS5 "AT1G75520" [Arabidopsis	0.963	0.910	0.410	4.6e-57
TAIR|locus:2080818	370	STY1 "AT3G51060" [Arabidopsis	0.376	0.332	0.517	2e-53
TAIR|locus:2155021	331	SHI "SHORT INTERNODES" [Arabid	0.360	0.356	0.503	1.1e-48
TAIR|locus:2122234	322	STY2 "AT4G36260" [Arabidopsis	0.143	0.145	0.787	3e-43
TAIR|locus:2053134	222	SRS4 "AT2G18120" [Arabidopsis	0.143	0.211	0.723	3.9e-35
TAIR|locus:2050074	174	SRS3 "SHI-related sequence3" [	0.128	0.241	0.785	6.2e-33
TAIR|locus:2183078	173	SRS8 "AT5G33210" [Arabidopsis	0.143	0.271	0.829	1.1e-22
TAIR|locus:2096169	183	SRS6 "AT3G54430" [Arabidopsis	0.131	0.234	0.674	2.3e-22

TAIR|locus:2013109 SRS7 "AT1G19790" [Arabidopsis thaliana (taxid:3702)]

 Score = 347 (127.2 bits), Expect = 8.8e-59, Sum P(2) = 8.8e-59
 Identities = 78/165 (47%), Positives = 88/165 (53%)

Query:     1 MAGWFYLGGXXXXXXXXXXXXXXXX--XNLYLYRSSANEEIYNSTKGFELWP-QYYHQQQ 57
             MAG FYLGG                   N YLY     +EIYN+ KGFE++P QY+ QQQ
Sbjct:     1 MAGLFYLGGRDHNKQDHHQEKDHNEDKSNNYLYLYK--DEIYNNNKGFEIFPPQYFQQQQ 58

Query:    58 ENM-----SNYLSFGVGPXXXXXXXXXXXXXXXDESSRSGGFVMRQXXXXXXXXXXXXMN 112
             +       +N  SFG+ P                 +  S    +R             MN
Sbjct:    59 QQNHAAAPTNLYSFGMVPSGGNINNNRSTNRSLYFNVVSDHEPVRSSTGGFTVTRQGNMN 118

Query:   113 CQDCGNQAKKDCPHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRER 157
             CQDCGNQAKKDCPHMRCRTCCKSRGF CQTHVKSTWV AAKRRER
Sbjct:   119 CQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVSAAKRRER 163

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2005659 SRS5 "AT1G75520" [Arabidopsis thaliana (taxid:3702)]

 Score = 587 (211.7 bits), Expect = 4.6e-57, P = 4.6e-57
 Identities = 147/358 (41%), Positives = 174/358 (48%)

Query:     1 MAGWFYLGGXXXXXXXXXXXXXXXXXN---------LYLYRSSANEEIYNSTKGFELWP- 50
             MAG+FYLGG                 +         LYLY+    +EIYN+ KGFE+WP 
Sbjct:     1 MAGFFYLGGRDNNSNNNKQDHHQVDKDHHHQDKSNYLYLYK----DEIYNNNKGFEIWPP 56

Query:    51 QYY----HQQQENMSNYLSFGVGPXXXXXXXXXXXXXXXDESSRSGGF--VMRQXXXXXX 104
             QY+    HQQQ+    + S                    +  SRS  F  V         
Sbjct:    57 QYFQQQEHQQQQQQQQHASAPANFYSFGMVPSGSSSNNNNNRSRSLYFNVVSDHEPGGFT 116

Query:   105 XXXXXXMNCQDCGNQAKKDCPHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERXXXXXXX 164
                   MNCQDCGNQAKKDCPHMRCRTCCKSRGF CQTHVKSTWVPAAKRRER       
Sbjct:   117 VTRQGGMNCQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHVKSTWVPAAKRRERLAQLASL 176

Query:   165 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXFRG------ENPK--RQRENQGLEVSQ-FPS 215
                                            G       N +      N GLEVSQ  P 
Sbjct:   177 QHHSASSRETQNAKRLREASGGDNNDDKDHSGGGGSALANTRVVNANSNSGLEVSQHLPP 236

Query:   216 ELSSSAVFRCVRAI----DDPDEEFAYQTAVHIGGHVFKGILYDQGPENRYTAAAESSHS 271
             E++S A+FRCVR      D+ D+ +AYQTAV+IGGH+FKGILYDQGPE++     ++ H 
Sbjct:   237 EVNSPAIFRCVRVSSIEEDEDDQAYAYQTAVNIGGHIFKGILYDQGPEHQ-----DNHH- 290

Query:   272 QQLNLIXXXXXXXXXXXXXXXXXXSNPSANL-IDPS-LYPAPLNAFIAGTQFFPPPRS 327
               LNL+                   N +  L +DPS LYPA LN+FIAGT FF PPRS
Sbjct:   291 --LNLLASTATTTNVEETATKTVTGNNNNGLMLDPSSLYPAQLNSFIAGTPFFTPPRS 346

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0048467 "gynoecium development" evidence=IGI

GO:0007389 "pattern specification process" evidence=RCA

GO:0048438 "floral whorl development" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

TAIR|locus:2080818 STY1 "AT3G51060" [Arabidopsis thaliana (taxid:3702)]

 Score = 308 (113.5 bits), Expect = 2.0e-53, Sum P(2) = 2.0e-53
 Identities = 73/141 (51%), Positives = 87/141 (61%)

Query:   205 NQGLEVSQFPSELSSSAVFRCVR--AIDDPDEEFAYQTAVHIGGHVFKGILYDQGPENR- 261
             + GLEV  FP+E+SSSAVFRCVR  +++D +EEFAYQTAV IGGH+FKGILYD GP +  
Sbjct:   230 HSGLEVGNFPAEVSSSAVFRCVRVSSVEDGEEEFAYQTAVSIGGHIFKGILYDLGPGSSG 289

Query:   262 ---YT--AAAESSH----SQQLNLIXXXXXXXXXXXXXX-----XXXXSNPSANLIDPS- 306
                Y   AA ESS     +QQLNLI                       S  +A  IDP+ 
Sbjct:   290 GGGYNVVAAGESSSGGGGAQQLNLITAGSVTVATASSSTPNLGGIGSSSAAAATYIDPAA 349

Query:   307 LYPAPLNAFIAGTQFFPPPRS 327
             LYP P+N F+AGTQFFP PRS
Sbjct:   350 LYPTPINTFMAGTQFFPNPRS 370

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=NAS

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0009938 "negative regulation of gibberellic acid mediated signaling pathway" evidence=NAS

GO:0010051 "xylem and phloem pattern formation" evidence=IGI

GO:0048479 "style development" evidence=IGI

GO:0048480 "stigma development" evidence=IGI

GO:0010252 "auxin homeostasis" evidence=IGI

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0003677 "DNA binding" evidence=IDA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2155021 SHI "SHORT INTERNODES" [Arabidopsis thaliana (taxid:3702)]

 Score = 280 (103.6 bits), Expect = 1.1e-48, Sum P(2) = 1.1e-48
 Identities = 64/127 (50%), Positives = 77/127 (60%)

Query:   207 GLEVSQFPSELSSSAVFRCVR--AIDDPDEEFAYQTAVHIGGHVFKGILYDQGPENRYTA 264
             GLEV  FP E+SSSAVFRCVR  ++DD +EE+AY+TAV IGGHVFKG+LYDQGP  R   
Sbjct:   208 GLEVGNFPPEVSSSAVFRCVRVSSVDDEEEEYAYKTAVSIGGHVFKGVLYDQGPAER--- 264

Query:   265 AAESSHSQQLNLIXXXXXXXXXXXXXX--XXXXSNPSANLIDP-SL-YPAPLNAFIAGTQ 320
             ++    SQ LNLI                     + S + IDP SL YP P+N F+ GT 
Sbjct:   265 SSSGGGSQPLNLITAGPSASSSSPNVSCNNGVVGSTSDHYIDPASLNYPTPINTFMTGTH 324

Query:   321 FFPPPRS 327
             FF   RS
Sbjct:   325 FFSNSRS 331

GO:0005634 "nucleus" evidence=ISM;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=TAS

GO:0009739 "response to gibberellin stimulus" evidence=IMP

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=TAS

GO:0046982 "protein heterodimerization activity" evidence=IPI

TAIR|locus:2122234 STY2 "AT4G36260" [Arabidopsis thaliana (taxid:3702)]

 Score = 237 (88.5 bits), Expect = 3.0e-43, Sum P(3) = 3.0e-43
 Identities = 37/47 (78%), Positives = 43/47 (91%)

Query:   111 MNCQDCGNQAKKDCPHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRER 157
             ++C+DCGNQAKKDC HMRCRTCCKSRGF C THV+STW+P A+RRER
Sbjct:    92 ISCRDCGNQAKKDCTHMRCRTCCKSRGFDCSTHVRSTWIPVARRRER 138

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=NAS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0009938 "negative regulation of gibberellic acid mediated signaling pathway" evidence=NAS

GO:0010051 "xylem and phloem pattern formation" evidence=IGI;RCA

GO:0048479 "style development" evidence=IGI

GO:0048480 "stigma development" evidence=IGI

GO:0010252 "auxin homeostasis" evidence=IGI

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

TAIR|locus:2053134 SRS4 "AT2G18120" [Arabidopsis thaliana (taxid:3702)]

 Score = 212 (79.7 bits), Expect = 3.9e-35, Sum P(2) = 3.9e-35
 Identities = 34/47 (72%), Positives = 39/47 (82%)

Query:   111 MNCQDCGNQAKKDCPHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRER 157
             ++CQ+CGNQAKK C H RCRTCCKS G  C THV+STW+P AKRRER
Sbjct:    70 ISCQECGNQAKKGCTHGRCRTCCKSNGLHCPTHVRSTWIPIAKRRER 116

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2050074 SRS3 "SHI-related sequence3" [Arabidopsis thaliana (taxid:3702)]

 Score = 211 (79.3 bits), Expect = 6.2e-33, Sum P(2) = 6.2e-33
 Identities = 33/42 (78%), Positives = 38/42 (90%)

Query:   113 CQDCGNQAKKDCPHMRCRTCCKSRGFQCQTHVKSTWVPAAKR 154
             C+DCGNQAKKDC +MRCRTCCKS+ F CQTH+KSTWVPA +R
Sbjct:     9 CEDCGNQAKKDCVYMRCRTCCKSKAFHCQTHIKSTWVPAYRR 50

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2183078 SRS8 "AT5G33210" [Arabidopsis thaliana (taxid:3702)]

 Score = 236 (88.1 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
 Identities = 39/47 (82%), Positives = 43/47 (91%)

Query:   111 MNCQDCGNQAKKDCPHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRER 157
             ++CQD GNQAKKDC HMRCRTCCKSRGF+C THV+STWVPA KRRER
Sbjct:    50 VSCQDFGNQAKKDCSHMRCRTCCKSRGFECSTHVRSTWVPATKRRER 96

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2096169 SRS6 "AT3G54430" [Arabidopsis thaliana (taxid:3702)]

 Score = 186 (70.5 bits), Expect = 2.3e-22, Sum P(2) = 2.3e-22
 Identities = 29/43 (67%), Positives = 36/43 (83%)

Query:   113 CQDCGNQAKKDCPHMRCRTCCKSRGFQCQTHVKSTWVPAAKRR 155
             C+DCGN+AKK+C   RCRTCCKSRG+ C THVKSTW+P++  R
Sbjct:    41 CRDCGNRAKKECLFERCRTCCKSRGYNCVTHVKSTWIPSSATR 83

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	327
pfam05142	155	pfam05142, DUF702, Domain of unknown function (DUF	5e-73
TIGR01623	43	TIGR01623, put_zinc_LRP1, putative zinc finger dom	8e-25
TIGR01624	50	TIGR01624, LRP1_Cterm, LRP1 C-terminal domain	2e-16
COG4907	595	COG4907, COG4907, Predicted membrane protein [Func	0.001

>gnl|CDD|218464 pfam05142, DUF702, Domain of unknown function (DUF702)

 Score =  222 bits (567), Expect = 5e-73
 Identities = 94/160 (58%), Positives = 106/160 (66%), Gaps = 9/160 (5%)

Query: 106 GGGGGMNCQDCGNQAKKDCPHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALQ 165
           GG GG++CQDCGNQAKKDC HMRCRTCCKSRGF CQTHVKSTWVPAAKRRERQQQLAA  
Sbjct: 1   GGSGGISCQDCGNQAKKDCTHMRCRTCCKSRGFDCQTHVKSTWVPAAKRRERQQQLAAAT 60

Query: 166 RHQQQQEQQQLNQQDSQHHHHHHHQQQQFRGENPKRQREN--QGLEVSQFPSELSSSAVF 223
            +                         Q    + +       QG   S FP E+SS AVF
Sbjct: 61  SNAASSA-----ASAPSKRPRDLLSNAQSSLSSTRTPSGTSPQGTGTSSFPPEVSSPAVF 115

Query: 224 RCVR--AIDDPDEEFAYQTAVHIGGHVFKGILYDQGPENR 261
           RCVR  ++DD D E+AYQT V+IGGHVFKGILYDQGPE++
Sbjct: 116 RCVRVSSVDDGDAEYAYQTTVNIGGHVFKGILYDQGPEHQ 155

Members of this family are found in various putative zinc finger proteins. Length = 155

>gnl|CDD|130684 TIGR01623, put_zinc_LRP1, putative zinc finger domain, LRP1 type

 Score = 94.2 bits (234), Expect = 8e-25
 Identities = 34/42 (80%), Positives = 37/42 (88%)

Query: 113 CQDCGNQAKKDCPHMRCRTCCKSRGFQCQTHVKSTWVPAAKR 154
           CQDCGNQAKK+C   RCRTCCKSRGF C THVKSTW+PAA+R
Sbjct: 2   CQDCGNQAKKECLFERCRTCCKSRGFHCVTHVKSTWIPAARR 43

This model represents a putative zinc finger domain found in plants. Arabidopsis thaliana has at least 10 distinct members. Proteins containing this domain, including LRP1, generally share the same size, about 300 amino acids, and architecture. This 43-residue domain, and a more C-terminal companion domain of similar size, appear as tightly conserved islands of sequence similarity. The remainder consists largely of low-complexity sequence. Several animal proteins have regions with matching patterns of Cys, Gly, and His residues. These are not included in the model but score between trusted and noise cutoffs. Length = 43

>gnl|CDD|233497 TIGR01624, LRP1_Cterm, LRP1 C-terminal domain

 Score = 71.8 bits (176), Expect = 2e-16
 Identities = 31/49 (63%), Positives = 38/49 (77%), Gaps = 3/49 (6%)

Query: 213 FPSELSSSAVFRCVR--AIDDPDE-EFAYQTAVHIGGHVFKGILYDQGP 258
           FP E+S+ AVF+CVR  AIDD ++ E+AYQ  V IGGHVFKG L+DQG 
Sbjct: 2   FPGEVSAPAVFKCVRVTAIDDGEQAEYAYQATVTIGGHVFKGFLHDQGL 50

This model represents a tightly conserved small domain found in LRP1 and related plant proteins. This family also contains a well-conserved putative zinc finger domain (TIGR01623). The rest of the sequence of most members consists of highly divergent, low-complexity sequence. Length = 50

>gnl|CDD|227244 COG4907, COG4907, Predicted membrane protein [Function unknown]

 Score = 40.7 bits (95), Expect = 0.001
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 7/50 (14%)

Query: 61  SNYLSFGVGPSRRSSSNFINAAAASDESSRSGGFVMRQGVGGGGGGGGGG 110
           +NY       +R  S+     A++   SS  GG       GGG GGGGGG
Sbjct: 551 NNYSRSFNNLNRAYSA----IASSRRSSSSGGGG---GFSGGGSGGGGGG 593

Length = 595

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	327
PF05142	154	DUF702: Domain of unknown function (DUF702) ; Inte	100.0
TIGR01624	50	LRP1_Cterm LRP1 C-terminal domain. This model repr	99.97
TIGR01623	43	put_zinc_LRP1 putative zinc finger domain, LRP1 ty	99.97

>PF05142 DUF702: Domain of unknown function (DUF702) ; InterPro: IPR007818 This is a family of plant proteins of unknown function

Probab=100.00  E-value=7.7e-78  Score=522.83  Aligned_cols=131  Identities=73%  Similarity=1.269  Sum_probs=111.0

Q ss_pred             CCCcccccccccccccCCCccccccccCCCccccCcccceeecchhhhHHHHHHHHHHhhhHHHHHHhhhcccccCCCCC
Q 040293          108 GGGMNCQDCGNQAKKDCPHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALQRHQQQQEQQQLNQQDSQHHHHH  187 (327)
Q Consensus       108 ~gg~~CQDCGNQAKKDC~h~RCRTCCKSRGFdC~THVKSTWVPAarRRERqq~~~a~~~~~~~~~~~~~~~~~~~~~~~~  187 (327)
                      +|+++||||||||||||+|||||||||||||||+||||||||||+||||||+++++++..++....              
T Consensus         2 ~gg~~CqdCGNqAkk~C~~~rCRtCCk~rg~~C~tHvksTWVPA~~rRer~~~~~~~~~~~~~~~~--------------   67 (154)
T PF05142_consen    2 SGGISCQDCGNQAKKDCSHRRCRTCCKSRGFDCPTHVKSTWVPAARRRERQQQLAAAQQQQQGSQG--------------   67 (154)
T ss_pred             CCCcchhhhcchhhcCCCcchhhhhhccCCCCCccceeccccchhhhchhhhcccccccccccCcc--------------
Confidence            578999999999999999999999999999999999999999999999999998876542211110              


Q ss_pred             ccccccccCCCCCCccc-------------------CCCccccCCCcccccceeeeeee--ccCCCCcceeEEeeeeecc
Q 040293          188 HHQQQQFRGENPKRQRE-------------------NQGLEVSQFPSELSSSAVFRCVR--AIDDPDEEFAYQTAVHIGG  246 (327)
Q Consensus       188 ~~~~~~~~~~~pkr~~~-------------------sSg~~~~~fP~eV~spAVFRCVR--siddge~E~AYQt~V~IgG  246 (327)
                              ...+||+|+                   ..+++.++||+||||||||||||  +|||+||||||||+|+|||
T Consensus        68 --------~~~~kr~r~~~~~~~~~~~~t~~~~~~~~~~~~~~~fP~eV~spAvFRCVRVssiDdgedE~AYQTaV~IGG  139 (154)
T PF05142_consen   68 --------SSGPKRPRELSNSTQSSTSCTSTSNGTSPSSLETGSFPAEVSSPAVFRCVRVSSIDDGEDEYAYQTAVNIGG  139 (154)
T ss_pred             --------cCCcCCcccccccCCCCccccccCCCcccccchhccCChhhcccceEEEEEEecccCcccceeeEEeEEECC
Confidence                    112222221                   12566679999999999999999  9999999999999999999


Q ss_pred             eeeeeeeeccCCCc
Q 040293          247 HVFKGILYDQGPEN  260 (327)
Q Consensus       247 HVFKGiLYDqG~e~  260 (327)
                      |||||||||||||.
T Consensus       140 HVFKGiLYDqG~~~  153 (154)
T PF05142_consen  140 HVFKGILYDQGPES  153 (154)
T ss_pred             EEeeeeeeccCCCC
Confidence            99999999999986

>TIGR01624 LRP1_Cterm LRP1 C-terminal domain

Probab=99.97  E-value=8.4e-33  Score=202.79  Aligned_cols=47  Identities=66%  Similarity=1.138  Sum_probs=45.9

Q ss_pred             CCCcccccceeeeeee--ccCCCCc-ceeEEeeeeecceeeeeeeeccCC
Q 040293          212 QFPSELSSSAVFRCVR--AIDDPDE-EFAYQTAVHIGGHVFKGILYDQGP  258 (327)
Q Consensus       212 ~fP~eV~spAVFRCVR--siddge~-E~AYQt~V~IgGHVFKGiLYDqG~  258 (327)
                      .||+||+|||||||||  +|||+|+ ||||||+|+|||||||||||||||
T Consensus         1 ~fP~ev~s~AvFrcvRvs~idd~~~~e~aYQt~V~IgGHvFkGiLyDqG~   50 (50)
T TIGR01624         1 GFPGEVSAPAVFKCVRVTAIDDGEQAEYAYQATVTIGGHVFKGFLHDQGL   50 (50)
T ss_pred             CCccccccceEEEEEEEeccCCCCCceEEEEEEEEECceEEeeEEeccCC
Confidence            5999999999999999  9999999 999999999999999999999997

This model represents a tightly conserved small domain found in LRP1 and related plant proteins. This family also contains a well-conserved putative zinc finger domain (TIGR01623). The rest of the sequence of most members consists of highly divergent, low-complexity sequence.

>TIGR01623 put_zinc_LRP1 putative zinc finger domain, LRP1 type

Probab=99.97  E-value=5.7e-32  Score=193.47  Aligned_cols=43  Identities=79%  Similarity=1.533  Sum_probs=42.1

Q ss_pred             ccccccccccccCCCccccccccCCCccccCcccceeecchhh
Q 040293          112 NCQDCGNQAKKDCPHMRCRTCCKSRGFQCQTHVKSTWVPAAKR  154 (327)
Q Consensus       112 ~CQDCGNQAKKDC~h~RCRTCCKSRGFdC~THVKSTWVPAarR  154 (327)
                      +|+||||||||+|.|+|||||||+|||||+||||||||||+||
T Consensus         1 ~C~~CgNpa~k~C~~~~CRtCCK~r~~DC~tHv~stw~p~~~r   43 (43)
T TIGR01623         1 VCQDCGNQAKKECLFERCRTCCKSRGFHCVTHVKSTWIPAARR   43 (43)
T ss_pred             ChhhccchhhCCCchhhhhHHhcccCcCCcchhcccccccccC
Confidence            5999999999999999999999999999999999999999987

This model represents a putative zinc finger domain found in plants. Arabidopsis thaliana has at least 10 distinct members. Proteins containing this domain, including LRP1, generally share the same size, about 300 amino acids, and architecture. This 43-residue domain, and a more C-terminal companion domain of similar size, appear as tightly conserved islands of sequence similarity. The remainder consists largely of low-complexity sequence. Several animal proteins have regions with matching patterns of Cys, Gly, and His residues. These are not included in the model but score between trusted and noise cutoffs.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	327
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	1e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 1e-05
 Identities = 38/199 (19%), Positives = 58/199 (29%), Gaps = 52/199 (26%)

Query: 14  RSKQEE------EEEEKEENLYLYRSSANEEIYNSTKGFELWPQYYHQQQENMSN----Y 63
            SKQEE      EE  +    +L        I    +   +  + Y +Q++ + N    +
Sbjct: 72  LSKQEEMVQKFVEEVLRINYKFLM-----SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126

Query: 64  LSFGVGPSRRSSSNFINAAAASDESSRSGGFVMRQGVGGGGGGGGGGMNCQDCGNQAKKD 123
             + V  SR      +  A       R    V+  GV G              G   K  
Sbjct: 127 AKYNV--SRLQPYLKLRQALLEL---RPAKNVLIDGVLG-------------SG---K-- 163

Query: 124 CPHMRCRTC-----CKSRGFQCQTHVKSTWVPAAKRRERQQQLAALQR--HQQQQEQQQL 176
                  T      C S   QC+   K  W+        +  L  LQ+  +Q        
Sbjct: 164 -------TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216

Query: 177 NQQDSQHHHHHHHQQQQFR 195
           +   S      H  Q + R
Sbjct: 217 SDHSSNIKLRIHSIQAELR 235

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 3e-05
 Identities = 22/161 (13%), Positives = 36/161 (22%), Gaps = 45/161 (27%)

Query: 183 HHHHHHHQ----QQQFRGEN------PKRQRENQGLEVSQFPSELSSSAVFRCVRAIDDP 232
           HHHHHH      + Q++ ++                +V   P  + S      +    D 
Sbjct: 1   HHHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDA 60

Query: 233 DEEFAYQTAVHIGGHVFKGILYDQGPENRYTAAAESSHSQQLNLITAATATTTTTTGTVA 292
                          +F   L  +  E       E         + +   T         
Sbjct: 61  VSGTLR---------LF-WTLLSK-QEEMVQKFVEEVLRINYKFLMSPIKTEQ------- 102

Query: 293 AGTSNPSANLIDPSL----YPAPLNAFIAGTQFFPP---PR 326
                       PS+    Y    +      Q F      R
Sbjct: 103 ----------RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR 133

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 41.7 bits (97), Expect = 1e-04
 Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 10/75 (13%)

Query: 148 WVPAAKRRERQQQLAALQRHQQQQEQQQLNQQDSQHHHHHHHQQQQFRGENPKRQRENQG 207
           W     R E++++L  L    +  EQ+   +        +  Q +Q      K +  N+ 
Sbjct: 90  W-----REEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVE----KNKINNRI 140

Query: 208 LEVSQFPSELSSSAV 222
            +   F  +  +  +
Sbjct: 141 AD-KAFYQQPDADII 154

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	327
d1sisa_	35	Toxin I5a {Scorpion (Buthus eupeus) [TaxId: 34648]	83.54

>d1sisa_ g.3.7.2 (A:) Toxin I5a {Scorpion (Buthus eupeus) [TaxId: 34648]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: Scorpion toxin-like
family: Short-chain scorpion toxins
domain: Toxin I5a
species: Scorpion (Buthus eupeus) [TaxId: 34648]

Probab=83.54  E-value=0.06  Score=35.22  Aligned_cols=13  Identities=46%  Similarity=1.528  Sum_probs=10.6

Q ss_pred             ccccccccCCCccc
Q 040293          127 MRCRTCCKSRGFQC  140 (327)
Q Consensus       127 ~RCRTCCKSRGFdC  140 (327)
                      ++||+||+.|| .|
T Consensus        14 ~kcr~ccgg~g-kc   26 (35)
T d1sisa_          14 KKCRDCCGGNG-KC   26 (35)
T ss_dssp             HHHHHHTTTCE-EE
T ss_pred             HHHHHHhCCCc-cc
Confidence            46999999998 44