Citrus Sinensis ID: 040307


Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------34
MQSCSEKKPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGDSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV
ccccccccccEEEEEcccccEEEEEccccccccEEEEEEEccccccEEEEEEEcccccccccccEEEEccccccCEEEECcccccccccEEEECcccEEEEEEcccccccEEcccccccccccccEEEEEcccccccEEEEECccccEEEEEcccccEEEEEcccccCEEEEEEcccccEEEECcccCEEEEEcccccccEEEEEcccccccEEEEEcccccccEEEEEEccccEEEEEEcccccccEEEcccccccEEEEEECcccccEEEEECccccEEEEEcccccccccccccccccccEEEEcccccEEEEEEccccccEEEEEEcccEEEEEc
**********VHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGDSLRLWEIHDDRTELKSLL***KTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRS********VEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV
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MQSCSEKKPGVHTYMAQWPISTVAWSVRHDRKSRLAVGSFLEDYSNKIELVNFNPETSDFSADNRLIFDHPYTPTNIAFFPSEETLNPDIVATSGDSLRLWEIHDDRTELKSLLNSNKTSEFSSAITSFDWAGFDTRRVATCSVDTTCVIWDIDREILETQLVAHDREVYDISWGGFNVFASVSGDCSVRVFDLRDKERSTIIYENPVQDCPLLRLEWNKADPRFMATVGMDSNKVVVLDIRFPTNPVVVLSKHEGSVNGISWAPLYGRRLCSVADDSRALIWEVVGPGYRSGNGGPSGDVEPELCYQSMAEINVVRWSPLELDWIAIAFVNKLQLLKV

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
WD repeat-containing protein LWD2 Clock protein essential for the proper expression phase and period length of both the oscillator and output genes known to participate in photoperiod sensing.probableQ38960
DDB1- and CUL4-associated factor 7 homolog probableQ552R1
DDB1- and CUL4-associated factor 7 Involved in craniofacial development. Acts upstream of the EDN1 pathway and is required for formation of the upper jaw equivalent, the palatoquadrate. The activity required for EDN1 pathway function differs between the first and second arches (By similarity). Associates with DIAPH1 and controls GLI1 transcriptional activity. Could be involved in normal and disease skin development. May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.probableP61962

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!


Spatial Structural Prediction

Structural Models Based on Templates

Template: 3FM0, chain A
Confidence level:very confident
Coverage over the Query: 68-338
View the alignment between query and template
View the model in PyMOL
Template: 1GOT, chain B
Confidence level:very confident
Coverage over the Query: 9-284
View the alignment between query and template
View the model in PyMOL